CA2469383A1 - Hybridization portion control oligonucleotide and its uses - Google Patents
Hybridization portion control oligonucleotide and its uses Download PDFInfo
- Publication number
- CA2469383A1 CA2469383A1 CA002469383A CA2469383A CA2469383A1 CA 2469383 A1 CA2469383 A1 CA 2469383A1 CA 002469383 A CA002469383 A CA 002469383A CA 2469383 A CA2469383 A CA 2469383A CA 2469383 A1 CA2469383 A1 CA 2469383A1
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- Prior art keywords
- oligonucleotide
- hybridization
- nucleotide sequence
- nucleotide
- nucleic acid
- Prior art date
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- 238000007901 in situ hybridization Methods 0.000 description 1
- 238000011065 in-situ storage Methods 0.000 description 1
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- YACKEPLHDIMKIO-UHFFFAOYSA-N methylphosphonic acid Chemical compound CP(O)(O)=O YACKEPLHDIMKIO-UHFFFAOYSA-N 0.000 description 1
- 238000002493 microarray Methods 0.000 description 1
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- 238000007479 molecular analysis Methods 0.000 description 1
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- 229920001220 nitrocellulos Polymers 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 238000001668 nucleic acid synthesis Methods 0.000 description 1
- 229940124276 oligodeoxyribonucleotide Drugs 0.000 description 1
- 230000003287 optical effect Effects 0.000 description 1
- 238000005457 optimization Methods 0.000 description 1
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- 238000005192 partition Methods 0.000 description 1
- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 description 1
- PTMHPRAIXMAOOB-UHFFFAOYSA-L phosphoramidate Chemical compound NP([O-])([O-])=O PTMHPRAIXMAOOB-UHFFFAOYSA-L 0.000 description 1
- 150000008300 phosphoramidites Chemical class 0.000 description 1
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- 229920001296 polysiloxane Polymers 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 125000003132 pyranosyl group Chemical group 0.000 description 1
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- 238000003201 single nucleotide polymorphism genotyping Methods 0.000 description 1
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- 238000000870 ultraviolet spectroscopy Methods 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/101—Modifications characterised by incorporating non-naturally occurring nucleotides, e.g. inosine
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/155—Modifications characterised by incorporating/generating a new priming site
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/161—Modifications characterised by incorporating target specific and non-target specific sites
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2531/00—Reactions of nucleic acids characterised by
- C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
- C12Q2531/113—PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2539/00—Reactions characterised by analysis of gene expression or genome comparison
- C12Q2539/10—The purpose being sequence identification by analysis of gene expression or genome comparison characterised by
- C12Q2539/113—Differential Display Analysis [DDA]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Analytical Chemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| KRPCT/KR01/02133 | 2001-12-08 | ||
| PCT/KR2001/002133 WO2003050304A1 (en) | 2001-12-08 | 2001-12-08 | Annealing control primer system for regulating primer annealing specificity and its applications |
| KRPCT/KR02/00816 | 2002-05-01 | ||
| PCT/KR2002/000816 WO2003093509A1 (en) | 2002-05-01 | 2002-05-01 | Methods and compositions for improving specificity of pcr amplication |
| PCT/KR2002/002051 WO2003050306A1 (en) | 2001-12-08 | 2002-11-04 | Hybridization portion control oligonucleotide and its uses |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2469383A1 true CA2469383A1 (en) | 2003-06-19 |
Family
ID=19198489
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA002469383A Abandoned CA2469383A1 (en) | 2001-12-08 | 2002-11-04 | Hybridization portion control oligonucleotide and its uses |
Country Status (9)
| Country | Link |
|---|---|
| US (1) | US20030152925A1 (https=) |
| JP (2) | JP4263612B2 (https=) |
| KR (1) | KR100649165B1 (https=) |
| AU (1) | AU2002222737A1 (https=) |
| CA (1) | CA2469383A1 (https=) |
| IL (1) | IL162317A0 (https=) |
| NZ (1) | NZ533221A (https=) |
| RU (1) | RU2004120769A (https=) |
| WO (1) | WO2003050304A1 (https=) |
Families Citing this family (26)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN1280422C (zh) * | 2004-08-26 | 2006-10-18 | 北京博奥生物芯片有限责任公司 | 一种不对称pcr扩增方法及其应用 |
| US20060188910A1 (en) * | 2005-02-18 | 2006-08-24 | Applera Corporation | Compositions, methods, and kits for analyzing DNA methylation |
| US8211899B2 (en) * | 2005-08-30 | 2012-07-03 | Inter-University Research Institute Corporation National Institute Of Natural Sciences | Artificial nucleic acid bases and their use in base pairing natural nucleic acid bases |
| CA2626977A1 (en) * | 2005-10-27 | 2007-05-03 | Rosetta Inpharmatics Llc | Nucleic acid amplification using non-random primers |
| DE602006018352D1 (de) | 2005-12-06 | 2010-12-30 | Ambion Inc | Rückübertragungs-primer und verfahren zu deren entwurf |
| KR100860619B1 (ko) * | 2006-02-23 | 2008-09-29 | 주식회사 씨젠 | 성인성 질환 유발 병원체 핵산 검출용올리고뉴클레오타이드 |
| WO2007129778A1 (en) * | 2006-05-04 | 2007-11-15 | Seegene, Inc. | Method for amplifying unknown dna sequence adjacent to known sequence |
| EP3121286B1 (en) | 2006-12-21 | 2019-11-20 | Gen-Probe Incorporated | Methods and compositions for nucleic acid amplification |
| EP1978104A1 (en) * | 2007-04-03 | 2008-10-08 | Freie Universität Berlin | A method for the quantitative analysis of RNA molecules in a sample |
| KR100987352B1 (ko) | 2008-04-15 | 2010-10-12 | 주식회사 인트론바이오테크놀로지 | 비특이 증폭을 감소시킬 수 있는 ｐｃｒ용 프라이머 및이를 이용한 ｐｃｒ 방법 |
| US9534255B2 (en) | 2008-12-17 | 2017-01-03 | Life Technologies Corporation | Methods, compositions, and kits for detecting allelic variants |
| EP3249053A1 (en) | 2009-03-27 | 2017-11-29 | Life Technologies Corporation | Methods, compositions, and kits for detecting allelic variants |
| JP5687414B2 (ja) * | 2009-04-20 | 2015-03-18 | オリンパス株式会社 | 多型の識別方法 |
| EP3597657B1 (en) * | 2009-05-21 | 2021-09-01 | Siemens Healthcare Diagnostics Inc. | Universal tags with non-natural nucleobases |
| EP2449132B1 (en) | 2009-07-01 | 2015-05-13 | Gen-Probe Incorporated | Methods and compositions for nucleic acid amplification |
| EP2475777A4 (en) * | 2009-09-11 | 2013-03-06 | Nugen Technologies Inc | COMPOSITIONS AND METHODS FOR COMPLETE TRANSCRIPTOMAL ANALYSIS |
| MY157586A (en) * | 2011-09-14 | 2016-06-16 | Ngk Insulators Ltd | Method for detecting target nucleic acid |
| ES2637489T3 (es) | 2012-04-18 | 2017-10-13 | F. Hoffmann-La Roche Ag | Ensayo de VHE |
| KR101525495B1 (ko) * | 2013-11-15 | 2015-06-03 | (주)다이오진 | 덤벨 구조 올리고뉴클레오티드, 이를 포함한 핵산 증폭용 프라이머 및 이를 이용한 핵산 증폭 방법 |
| KR101723207B1 (ko) * | 2015-01-29 | 2017-04-05 | (주)다이오진 | 덤벨 구조의 올리고뉴클레오티드 및 이를 이용한 유전자 변이 검출 방법 |
| CN107075576B (zh) * | 2015-02-25 | 2021-05-25 | 精确诊断有限公司 | 哑铃结构寡核苷酸、包含其的核酸扩增用引物及利用该引物的核酸扩增方法 |
| CN104845967B (zh) * | 2015-04-15 | 2020-12-11 | 苏州新海生物科技股份有限公司 | 寡聚核苷酸片段及使用其的选择性扩增目标核酸序列变异体的方法及应用 |
| JP6698708B2 (ja) | 2015-06-09 | 2020-05-27 | ライフ テクノロジーズ コーポレーション | 分子タグ付けのための方法、システム、組成物、キット、装置、及びコンピュータ可読媒体 |
| KR101961642B1 (ko) * | 2016-04-25 | 2019-03-25 | (주)진매트릭스 | 절단된 상보적인 태그 절편을 이용한 표적 핵산 서열 검출 방법 및 그 조성물 |
| EP3682025A1 (en) * | 2017-09-14 | 2020-07-22 | H. Hoffnabb-La Roche Ag | Novel method for generating circular single-stranded dna libraries |
| KR101856205B1 (ko) * | 2017-11-16 | 2018-06-20 | 제노플랜코리아 주식회사 | 핵산의 대립형질 특이적 프라이머 및 이를 이용한 유전형 판별 방법 |
Family Cites Families (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU2544292A (en) * | 1991-09-11 | 1993-04-05 | Medical Research Council | Improvements in oligonucleotide primers and probes |
| WO1993014217A1 (en) * | 1992-01-10 | 1993-07-22 | Life Technologies, Inc. | Use of predetermined nucleotides having altered base pairing characteristics in the amplification of nucleic acid molecules |
| WO2001023618A2 (en) * | 1999-09-30 | 2001-04-05 | Qiagen Genomics, Inc. | Compositions and methods for reducing oligonucleotide hybridization and priming specificity |
-
2001
- 2001-12-08 AU AU2002222737A patent/AU2002222737A1/en not_active Abandoned
- 2001-12-08 WO PCT/KR2001/002133 patent/WO2003050304A1/en not_active Ceased
- 2001-12-14 US US10/014,496 patent/US20030152925A1/en not_active Abandoned
-
2002
- 2002-09-19 JP JP2003551326A patent/JP4263612B2/ja not_active Expired - Lifetime
- 2002-09-19 IL IL16231702A patent/IL162317A0/xx unknown
- 2002-09-19 KR KR1020047008441A patent/KR100649165B1/ko not_active Expired - Lifetime
- 2002-11-04 NZ NZ533221A patent/NZ533221A/en unknown
- 2002-11-04 RU RU2004120769/13A patent/RU2004120769A/ru not_active Application Discontinuation
- 2002-11-04 JP JP2003551327A patent/JP2005522190A/ja active Pending
- 2002-11-04 CA CA002469383A patent/CA2469383A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| US20030152925A1 (en) | 2003-08-14 |
| JP4263612B2 (ja) | 2009-05-13 |
| KR20050028904A (ko) | 2005-03-23 |
| KR100649165B1 (ko) | 2006-11-24 |
| AU2002222737A1 (en) | 2003-06-23 |
| JP2005522190A (ja) | 2005-07-28 |
| WO2003050304A1 (en) | 2003-06-19 |
| RU2004120769A (ru) | 2005-04-20 |
| NZ533221A (en) | 2006-01-27 |
| IL162317A0 (en) | 2005-11-20 |
| JP2005511096A (ja) | 2005-04-28 |
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| Date | Code | Title | Description |
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| EEER | Examination request | ||
| FZDE | Discontinued |