AU2010331393B2 - Method for designing probe in DNA microarray, and DNA microarray provided with probe designed thereby - Google Patents

Method for designing probe in DNA microarray, and DNA microarray provided with probe designed thereby Download PDF

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Publication number
AU2010331393B2
AU2010331393B2 AU2010331393A AU2010331393A AU2010331393B2 AU 2010331393 B2 AU2010331393 B2 AU 2010331393B2 AU 2010331393 A AU2010331393 A AU 2010331393A AU 2010331393 A AU2010331393 A AU 2010331393A AU 2010331393 B2 AU2010331393 B2 AU 2010331393B2
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AU
Australia
Prior art keywords
genomic dna
probe
restriction enzyme
designing
adaptor
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Ceased
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AU2010331393A
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English (en)
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AU2010331393A1 (en
Inventor
Hiroyuki Enoki
Aya Murakami
Satoru Nishimura
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Toyota Motor Corp
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Toyota Motor Corp
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Publication of AU2010331393A1 publication Critical patent/AU2010331393A1/en
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Publication of AU2010331393B2 publication Critical patent/AU2010331393B2/en
Ceased legal-status Critical Current
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C12Q1/683—Hybridisation assays for detection of mutation or polymorphism involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
    • C12Q1/6855—Ligating adaptors

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2010331393A 2009-12-14 2010-12-13 Method for designing probe in DNA microarray, and DNA microarray provided with probe designed thereby Ceased AU2010331393B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
JP2009283430A JP5799484B2 (ja) 2009-12-14 2009-12-14 Ｄｎａマイクロアレイにおけるプローブ設計方法、当該方法により設計されたプローブを有するｄｎａマイクロアレイ
JP2009-283430 2009-12-14
PCT/JP2010/072322 WO2011074510A1 (ja) 2009-12-14 2010-12-13 Dnaマイクロアレイにおけるプローブ設計方法、当該方法により設計されたプローブを有するdnaマイクロアレイ

Publications (2)

Publication Number Publication Date
AU2010331393A1 AU2010331393A1 (en) 2012-07-12
AU2010331393B2 true AU2010331393B2 (en) 2014-06-19

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AU2010331393A Ceased AU2010331393B2 (en) 2009-12-14 2010-12-13 Method for designing probe in DNA microarray, and DNA microarray provided with probe designed thereby

Country Status (7)

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US (2) US20120190582A1 (enExample)
EP (1) EP2514820B1 (enExample)
JP (1) JP5799484B2 (enExample)
CN (1) CN102753686B (enExample)
AU (1) AU2010331393B2 (enExample)
BR (1) BR112012014466B1 (enExample)
WO (1) WO2011074510A1 (enExample)

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP5653957B2 (ja) * 2011-04-28 2015-01-14 トヨタ自動車株式会社 サトウキビ属植物の黒穂病抵抗性関連マーカーとその利用
JP6253132B2 (ja) 2013-09-09 2017-12-27 国立研究開発法人農業・食品産業技術総合研究機構 イチゴ属植物の炭疽病抵抗性関連マーカーとその利用
CN107018668B (zh) * 2016-01-12 2018-07-10 中国科学院生物物理研究所 一种针对东亚人群全基因组范围内的非编码区的SNPs的DNA芯片
JP6515884B2 (ja) * 2016-06-29 2019-05-22 トヨタ自動車株式会社 Ｄｎａプローブの作製方法及びｄｎａプローブを用いたゲノムｄｎａ解析方法
US20190267114A1 (en) * 2016-09-22 2019-08-29 Garvan Institute Of Medical Research Device for presenting sequencing data
JP7056012B2 (ja) 2017-05-19 2022-04-19 トヨタ自動車株式会社 ランダムプライマーセット、及びこれを用いたｄｎａライブラリーの作製方法

Citations (1)

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US20070016382A1 (en) * 2004-01-16 2007-01-18 Affymetrix, Inc. Methods for Selecting a Collection of Single Nucleotide Polymorphisms

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EP1124990B1 (en) * 1998-10-27 2006-01-18 Affymetrix, Inc. Complexity management and analysis of genomic dna
JP2002532070A (ja) * 1998-12-04 2002-10-02 ケイゲーネ エヌブイ 核酸配列を解析するためのアレイおよび方法
WO2000079006A1 (en) * 1999-06-17 2000-12-28 Fred Hutchinson Cancer Research Center Oligonucleotide arrays for high resolution hla typing
US6958225B2 (en) * 1999-10-27 2005-10-25 Affymetrix, Inc. Complexity management of genomic DNA
US6713258B2 (en) 2000-03-29 2004-03-30 Center For The Application Of Molecular Biology To International Agriculture (Cambia) Methods for genotyping by hybridization analysis
US20030044791A1 (en) * 2001-06-13 2003-03-06 Flemington Erik Kolstad Adaptor kits and methods of use
US20030162181A1 (en) * 2002-02-28 2003-08-28 Eastman Kodak Company DNA sequencing and gene identification
EP1350853A1 (en) * 2002-04-05 2003-10-08 ID-Lelystad, Instituut voor Dierhouderij en Diergezondheid B.V. Detection of polymorphisms
JP2003330934A (ja) * 2002-05-10 2003-11-21 Celestar Lexico-Sciences Inc 変異体配列解析装置、変異体配列解析方法、プログラム、および、記録媒体
FR2853907B1 (fr) * 2003-04-18 2007-08-03 Commissariat Energie Atomique Procede de preparation de fragments d'adn par fragmentation selective d'acides nucleiques et ses applications
CN105039313B (zh) * 2005-06-23 2018-10-23 科因股份有限公司 用于多态性的高通量鉴定和检测的策略
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Also Published As

Publication number Publication date
US10214769B2 (en) 2019-02-26
EP2514820A4 (en) 2013-08-07
US20170166951A1 (en) 2017-06-15
BR112012014466A2 (pt) 2015-11-24
BR112012014466B1 (pt) 2020-12-29
AU2010331393A1 (en) 2012-07-12
CN102753686A (zh) 2012-10-24
WO2011074510A1 (ja) 2011-06-23
US20120190582A1 (en) 2012-07-26
EP2514820B1 (en) 2020-05-06
EP2514820A1 (en) 2012-10-24
JP5799484B2 (ja) 2015-10-28
CN102753686B (zh) 2015-09-09
JP2011120558A (ja) 2011-06-23

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