WO2022073331A1 - 一种腈水解酶突变体及其在催化合成2-氯烟酸中的应用 - Google Patents
一种腈水解酶突变体及其在催化合成2-氯烟酸中的应用 Download PDFInfo
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- WO2022073331A1 WO2022073331A1 PCT/CN2021/088232 CN2021088232W WO2022073331A1 WO 2022073331 A1 WO2022073331 A1 WO 2022073331A1 CN 2021088232 W CN2021088232 W CN 2021088232W WO 2022073331 A1 WO2022073331 A1 WO 2022073331A1
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- nitrilase
- reaction
- chloronicotinonitrile
- mutant
- chloronicotinic acid
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- 108010033272 Nitrilase Proteins 0.000 title claims abstract description 36
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- 238000007036 catalytic synthesis reaction Methods 0.000 title abstract description 3
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- 229960001785 mirtazapine Drugs 0.000 description 1
- RONZAEMNMFQXRA-UHFFFAOYSA-N mirtazapine Chemical compound C1C2=CC=CN=C2N2CCN(C)CC2C2=CC=CC=C21 RONZAEMNMFQXRA-UHFFFAOYSA-N 0.000 description 1
- 229960000689 nevirapine Drugs 0.000 description 1
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- IJGRMHOSHXDMSA-UHFFFAOYSA-N nitrogen Substances N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 1
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- 235000019319 peptone Nutrition 0.000 description 1
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/14—Hydrolases (3)
- C12N9/78—Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P17/00—Preparation of heterocyclic carbon compounds with only O, N, S, Se or Te as ring hetero atoms
- C12P17/10—Nitrogen as only ring hetero atom
- C12P17/12—Nitrogen as only ring hetero atom containing a six-membered hetero ring
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y305/00—Hydrolases acting on carbon-nitrogen bonds, other than peptide bonds (3.5)
- C12Y305/05—Hydrolases acting on carbon-nitrogen bonds, other than peptide bonds (3.5) in nitriles (3.5.5)
- C12Y305/05001—Nitrilase (3.5.5.1)
Definitions
- the invention relates to the technical field of enzyme engineering, and mainly relates to a nitrilase mutant and its application in the catalytic synthesis of 2-chloronicotinic acid.
- 2-Chloronicotinic acid also known as 2-chloronicotinic acid
- 2-chloronicotinic acid is an important nitrogen heterocyclic fine chemical intermediate, which is widely used in the synthesis of pesticides and pharmaceutical chemicals.
- 2-chloronicotinic acid can be used to synthesize a series of bactericidal activities of sulfonylurea herbicide nicosulfuron, amide herbicide diflufenacil, amide fungicide boscalid and triazole thione compound.
- cardiovascular disease treatment drugs such as the anti-AIDS drug nevirapine, the antidepressant mirtazapine, the anti-inflammatory drug pranoprofen, the anti-inflammatory and analgesic drugs niflufenac and nicotinic acid, etc.
- the market demand for 2-chloronicotinic acid is growing due to its wide application in pesticides and medicines.
- the production methods of 2-chloronicotinic acid are mainly chemical methods, including nicotinic acid nitrogen oxidation-chlorination-hydrolysis method, nicotinonitrile oxidation-chlorination-hydrolysis method, 3-picoline chlorination-oxidation method and alkenyl Ether and ethyl cyanoacetate ring formation, etc.
- these methods have disadvantages such as harsh reaction conditions, serious environmental pollution, and high equipment requirements. Therefore, the development of clean and efficient production technology of 2-chloronicotinic acid has important industrial application value.
- Biocatalytic hydrolysis and hydration of nitrile compounds has significant advantages such as high efficiency, environmental friendliness, and high chemical, regio- and stereoselectivity, and has become an important method for the industrial synthesis of carboxylic acids and amides.
- Industrial synthesis of products are significant advantages such as high efficiency, environmental friendliness, and high chemical, regio- and stereoselectivity, and has become an important method for the industrial synthesis of carboxylic acids and amides.
- Nitrilases can catalyze the hydrolysis of nitrile compounds to produce corresponding carboxylic acids and ammonia, but no nitrilases have been reported so far that can hydrolyze 2-chloronicotinonitrile to produce 2-chloronicotinic acid. Studies have shown that some nitrilases also have nitrile hydration activity and catalyze the formation of nitrile compounds into corresponding amides. The catalytic properties of nitrilase with both nitrile hydrolysis and nitrile hydration activities provide a new perspective for the development of new functions in bioorganic synthesis.
- Protein molecular modification is an effective means to regulate the catalytic properties of nitrilase. Therefore, a mutant capable of specifically hydrolyzing 2-chloronicotinonitrile to synthesize 2-chloronicotinic acid was developed through molecular modification, which was used for the bioorganic 2-chloronicotinic acid. Synthesis is a problem to be solved by those skilled in the art.
- the purpose of the present invention is to transform the nitrilase derived from Rhodococcus zopfii through protein engineering technology, and construct a mutant capable of specifically hydrolyzing 2-chloronicotinonitrile to synthesize 2-chloronicotinic acid.
- the efficient and green production is of great significance.
- the present invention adopts the following technical solutions:
- the present invention utilizes error-prone PCR technology to randomly mutate the nitrilase encoding gene (SEQ ID NO. 1) derived from R. zopfii, specifically, firstly uses T7 primer to carry out PCR amplification, and randomly introduces mutations to obtain nitrilase
- the nucleotide sequence of the mutant was connected to the expression vector pET-28b(+) and then introduced into the E. coli host. After induction and expression, the mutant with reduced nitrile hydration activity and increased nitrile hydrolysis activity was obtained through high-throughput screening.
- the present invention provides a nitrilase mutant whose amino acid sequence is shown in SEQ ID NO.4, that is, the 167th tryptophan W mutation of the parent nitrilase whose amino acid sequence is shown in SEQ ID NO.2 Glycine G.
- the present invention also provides a gene encoding the nitrilase mutant, the nucleotide sequence of which is shown in SEQ ID NO.3.
- the present invention also provides a recombinant plasmid comprising the gene.
- the original vector is pET-28b(+).
- the present invention also provides a recombinant engineering bacterium comprising the recombinant plasmid.
- the above-mentioned recombinant plasmid transforms host cells to obtain recombinant genetically engineered bacteria, and the host cells can be various conventional host cells in the art.
- the host cells are Escherichia coli BL21 (DE3).
- Another object of the present invention is to provide the application of the nitrilase mutant in catalyzing the hydrolysis of 2-chloronicotinonitrile to synthesize 2-chloronicotinic acid.
- the application includes: using the wet cell body, the wet cell body immobilized cell or the pure enzyme extracted after the wet cell body is ultrasonically broken, obtained after the recombinant engineering bacteria containing the nitrilase mutant encoding gene is induced and expressed, as a catalyst, and using 2 -Chloronicotinonitrile is the substrate, and the NaH 2 PO 4 -Na 2 HPO 4 buffer solution with pH value of 6-8 is used as the reaction medium to form a reaction system, and the reaction is carried out at 25-45 ° C. After the reaction, separation and purification are performed to obtain 2- Chloronic acid.
- the dosage of the catalyst is 0.2-3 g/L based on the dry weight of the bacterial cells, and the substrate concentration is 50-500 mM.
- the thalline collected after the induction culture is used as a catalyst, and a 200 mM NaH 2 PO 4 -Na 2 HPO 4 buffer with a pH value of 7 is used as a reaction medium.
- the concentration of the substrate 2-chloronicotinonitrile is 300mM, bacterial cells 2g/L (dry weight), react at 30°C for 30-40h.
- the wet cell preparation method is as follows: the engineered bacteria containing the nitrilase mutant gene are inoculated into a liquid LB medium containing 50 ⁇ g/mL kanamycin, cultured at 37° C. at 200 rpm overnight, and then incubated at 2% (volume). Concentration) of the inoculum was transferred to a fresh liquid LB medium containing 50 ⁇ g/mL kanamycin, and cultured at 37°C at 180 rpm until the bacterial concentration OD 600 was 0.4-0.8, and then added to the medium with a final concentration of 0.1-1mM IPTG, 28°C, 180rpm for 12h induction. The fermentation broth was centrifuged at 8000 rpm for 10 min at 4°C, and the cells were collected. The composition of LB liquid medium was (g/L): peptone 10, yeast extract 5, NaCl 10, pH 7.0.
- the nitrilase mutant W167G provided by the invention can eliminate the hydration activity of the parent nitrilase to 2-chloronicotinonitrile, no by-product 2-chloronicotinamide is produced in the catalytic process, and the nitrile hydrolysis activity is greatly improved, and can be specifically catalyzed
- the hydrolysis of 2-chloronicotinonitrile to synthesize 2-chloronicotinic acid has important potential in the enzymatic industrial synthesis of 2-chloronicotinic acid.
- Figure 1 shows the HPLC analysis chromatograms of the reaction products of 2-chloronicotinonitrile catalyzed by the parent nitrilase (A) and the mutant W167G (B).
- Figure 2 shows the progress of the hydrolysis reaction of mutant W167G catalyzed by 300 mM 2-chloronicotinonitrile.
- primers T7 F and T7 R were used to carry out PCR amplification and random introduction of mutations.
- PCR reaction system 50 ⁇ L: template pET-RZ 0.5-20 ng, 1 ⁇ Taq Buffer (without Mg 2+ ), 0.2 mM dNTP, 0.3 mM MnCl 2 , 2 mM MgCl 2 , 0.2 each of upstream and downstream primers T7 F and T7 R ⁇ M, Taq DNA polymerase 5U.
- PCR conditions (1) pre-denaturation at 95°C for 5 min; (2) denaturation at 95°C for 15s; (3) annealing at 60°C for 5s; (4) extension at 72°C for 30s, steps (2) to (4) for a total of 30 cycles; ( 5) The final extension at 72°C for 3 min, and storage at 4°C.
- the PCR products were analyzed by agarose gel electrophoresis and recovered by cutting the gel.
- the above-mentioned gel recovery product was used as a primer to amplify to obtain a complete plasmid.
- PCR system 50 ⁇ L: 2 ⁇ Phanta Max buffer, 0.2 mM dNTPs, 2.5 U Phanta Max high-fidelity polymerase, 50 ng of gel recovery product, 20 ng of pET-RZ plasmid.
- PCR conditions (1) pre-denaturation at 95 °C for 5 min; (2) denaturation at 95 °C for 15 s, annealing at 60 °C for 5 s, and extension at 72 °C for 3.5 min, step (2) for a total of 35 cycles; (3) final extension at 72 °C for 5 min, 4 Store at °C.
- the amplified PCR product was digested with endonuclease DpnI at 37°C for 3h, inactivated at 65°C for 10min, transformed into E.coli BL21 (DE3), spread on LB plates containing kanamycin (50 ⁇ g/mL), 37 Cultivate overnight.
- Example 2 Pick a single colony in Example 1 and culture it in a 96 deep-well plate, add 1 mL of LB medium (containing a final concentration of 50 ⁇ g/mL kanamycin) to each well plate, cultivate at 37°C for 12 h, and take 200 ⁇ L of bacterial liquid for transfer. to 800 ⁇ L of fresh LB medium (containing a final concentration of 50 ⁇ g/mL kanamycin, 0.1 mM IPTG), and cultured at 28° C. for 18 h.
- LB medium containing a final concentration of 50 ⁇ g/mL kanamycin
- the cells of the 96 deep-well plate were centrifuged for 30 min (3000 rpm, 4° C.), the supernatant was discarded, washed with NaH 2 PO 4 -Na 2 HPO 4 buffer (200 mM, pH 7.0), and the cells were resuspended in 600 ⁇ L.
- Substrate 2-chloronicotinonitrile (final concentration 100mM) was added to each well, and the reaction was carried out at 30°C for 12h.
- reaction solution of the 96 deep-well plate was centrifuged for 30 min (3000 rpm, 4°C), and 20 ⁇ L of the supernatant was transferred to a 96-well micro-reaction plate containing 150 ⁇ L of a mixture of o-phthalaldehyde and mercaptoethanol in each well. Incubate at 37°C for 30min. The fluorescence intensity was then measured using a microplate reader (excitation wavelength 412 nm, emission wavelength 467 nm). Stronger fluorescence indicates higher nitrile hydrolysis activity and more NH3 and 2-chloronicotinic acid produced. After verification by liquid chromatography, sequencing analysis was performed.
- the mutant W167A (Table 2) was obtained by screening, that is, the codon at position 167 was mutated from TGG to GCC.
- PCR system 50 ⁇ L: template pET-W167A 0.5-20 ng, primers W167 F and W167 R 10-15 pmol each, 2 ⁇ Phanta Max buffer, 0.2 mM dNTP, 2.5 U Phanta Max high-fidelity polymerase.
- PCR conditions (1) pre-denaturation at 95 °C for 5 min; (2) denaturation at 95 °C for 15 s, annealing at 60 °C for 5 s, and extension at 72 °C for 3.5 min, step (2) for a total of 35 cycles; (3) final extension at 72 °C for 5 min, 4 Store at °C.
- the amplified PCR product was digested with endonuclease DpnI at 37°C for 3h, inactivated at 65°C for 10min, transformed into E.coli BL21 (DE3), spread on LB plates containing kanamycin (50 ⁇ g/mL), 37 Cultivate overnight.
- a total of 200-300 single clones were generated by the saturation mutation at position 167, which, after sequencing, contained all 20 natural amino acids.
- the mutants with no nitrile hydration activity and improved nitrile hydrolysis activity were determined to be W167S (that is, the codon at position 167 was mutated from TGG to TCC), W167C (that is, the codon at position 167 was mutated from TGG to TGC), and W167G (that is, the codon at position 167 was mutated from TGG to TGC).
- the codons were mutated from TGG to GGC), as shown in Table 2.
- the parent nitrilase has hydratase activity when hydrolyzing 2-chloronicotinonitrile, producing a large amount of by-product 2-chloronicotinamide (Fig. 1A).
- the transformed mutant W167G only has hydrolase activity and no by-product 2-chloronicotinamide Nicotinamide was produced ( Figure IB).
- the preferred mutant W167G in Example 3 adopts the method of Example 4 to induce and cultivate the collected wet cells as a catalyst, and is added to the reaction system (total system 10 mL, substrate 2-chloronicotinonitrile 300 mM, pH 7 200 mM NaH 2 PO 4 -Na 2 HPO 4 buffer solution, 0.02 g of bacterial cells (dry weight)), react at 30°C. 100 ⁇ L of the reaction solution was sampled at certain time intervals, and 10 ⁇ L of 6M HCl was added to terminate the reaction, and the content of the product was detected by HPLC.
- the mutant W167G can completely convert 300 mM substrate 2-chloronicotinonitrile to 2-chloronicotinic acid.
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Abstract
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Claims (10)
- 一种腈水解酶突变体,其特征在于,其氨基酸序列如SEQ ID NO.4所示。
- 一种编码如权利要求1所述的腈水解酶突变体的基因,其特征在于,其核苷酸序列如SEQ ID NO.3所示。
- 一种包含如权利要求2所述的基因的重组质粒。
- 如权利要求3所述的重组质粒,其特征在于,原始载体为pET-28b(+)。
- 一种包含如权利要求3或4所述的重组质粒的重组工程菌。
- 如权利要求5所述的重组工程菌,其特征在于,宿主细胞为大肠杆菌Escherichia coli BL21。
- 如权利要求1所述的腈水解酶突变体在催化2-氯烟腈水解合成2-氯烟酸中的应用。
- 如权利要求7所述的应用,其特征在于,包括:以含腈水解酶突变体编码基因的重组工程菌经诱导表达后获得的湿菌体、湿菌体固定化细胞或者湿菌体超声破碎后提取的纯酶为催化剂,以2-氯烟腈为底物,以pH值6~8的NaH 2PO 4-Na 2HPO 4缓冲液为反应介质构成反应体系,在25~45℃下反应,反应结束后,分离纯化获得2-氯烟酸。
- 如权利要求8所述的应用,其特征在于,反应体系中,催化剂的用量以菌体干重计为0.2~3g/L,底物浓度为50~500mM。
- 如权利要求9所述的应用,其特征在于,以诱导培养后收集的菌体为催化剂,pH值为7的200mM NaH 2PO 4-Na 2HPO 4缓冲液为反应介质,反应体系中,底物2-氯烟腈的浓度为300mM,菌体以干重计为2g/L,30℃下反应30~40h。
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