WO2007011941A2 - Anticorps neutralisants anti-b7rp1 humains - Google Patents
Anticorps neutralisants anti-b7rp1 humains Download PDFInfo
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- WO2007011941A2 WO2007011941A2 PCT/US2006/027862 US2006027862W WO2007011941A2 WO 2007011941 A2 WO2007011941 A2 WO 2007011941A2 US 2006027862 W US2006027862 W US 2006027862W WO 2007011941 A2 WO2007011941 A2 WO 2007011941A2
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- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2827—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against B7 molecules, e.g. CD80, CD86
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- C07K2317/565—Complementarity determining region [CDR]
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- C07K2317/76—Antagonist effect on antigen, e.g. neutralization or inhibition of binding
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- C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
Definitions
- the invention relates to human monoclonal antibodies that bind B7 related protein-1 (B7RP1). Compositions and methods for treating diseases and disorders related to immunosuppression and immune activation are also described.
- T-cells initiate the immune response, mediate antigen-specific effector functions, and regulate the activity of other leukocytes by secreting cytokines.
- T-cell T-lymphocyte
- APC antigen presenting cells
- MHC major histocompatibility complex
- T-cells can only recognize antigen presented on an APC.
- proper T-cell activation also requires the interaction of other cell-surface molecules on both the T-cell and the APC.
- co-stimulatory molecules consist of a receptor on the responding cell and a ligand present on the inducer cell.
- This antigen independent, co-stimulatory signal must be delivered by engagement of members of the B7 family on the APC with their receptors on T-cells.
- a productive immune response leads to proliferation, differentiation, clonal expansion, and effector function.
- T-cells undergo a state of long-lasting antigen- specific unresponsiveness, termed anergy. Phase II clinical experiments have demonstrated that blocking one co-stimulation pathway is efficacious in the treatment of psoriasis (Abrams et al, 2000, J Exp Med. .
- B7 related protein-1 (B7RP1)
- B7RP1 B7 related protein-1
- PCT Application Publication is a type 1 transmembrane protein with a signal sequence and extracellular domain at the amino-terminus, an extracellular domain comprising two Ig loops, a transmembrane domain, and a carboxy terminal intracellular domain
- B7RP1 preferentially binds to ICOS (which stands for "inducible costimulator”; Yoshinga et al, 2000, Int. Immun. 12:1439-1447) expressed on the cell surface of T-cells.
- ICOS plays an important role in the production of both type 1 and type 2 cytokines by activated T-cells (Coyle et al, 2000, Immunity 13:95-105).
- B7RP1 is the sole ligand expressed constitutively on APCs (Yoshinaga et al, 1999, Nature. 402:827-32), while ICOS is expressed only on activated T-cells (McAdam et al, 2000, Journal of Immunology 165:5035-40).
- B7RP1 -dependent signaling is required for the activation of the effector (i.e. fully activated) T-cell, as well as its maturation from its na ⁇ ve precursor (Dong et al, 2003, Journal of Autoimmunity. 21:255-60; Coyle et al, 2000, Immunity. 13_:95-105). Consequently, the B7RP1/ICOS interaction is required for proper T-cell-dependent recall immune responses (Dong et al, 2003, Journal of Autoimmunity. 21:255-60).
- the invention provides monoclonal antibodies that bind to B7 related protein- 1 (B7RP1).
- the monoclonal antibodies are human monoclonal antibodies that neutralize biological activities of B7RP1 and are particularly useful for inhibiting partially or completely the immune co-stimulatory activity of B7RP1.
- cells, particularly hybridoma cells that produce the monoclonal antibodies of the invention.
- the antibodies of the invention bind specifically to the H or D region of B7RP1 as described herein.
- the invention further provides fusion proteins comprising the sequence of an antibody Fc region and one or more sequences identified as SEQ ID NO: 1 through
- Such molecules can be prepared using methods as described, for example, in International Patent Application, Publication No. WO 00/24782, which is hereby incorporated by reference. Such molecules can be expressed, for example, in mammalian cells (e.g. Chinese Hamster Ovary cells) or bacterial cells (e.g. E. coli cells).
- mammalian cells e.g. Chinese Hamster Ovary cells
- bacterial cells e.g. E. coli cells
- the invention provides antibodies comprising a heavy chain and a light chain, wherein the heavy chain comprises an heavy chain constant region selected from IgGl, IgG2, IgG3, IgG4, IgM, IgA and IgE heavy chain constant regions or any allelic variation thereof (as discussed in Kabat et ah, 1991, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242), incorporated herein by reference, and the variable region of the heavy chain comprises an amino acid sequence as set forth in any of SEQ ID NO: 7 through SEQ ID NO. 14, or an antigen- binding or an immunologically functional immunoglobulin fragment thereof.
- the heavy chain comprises an heavy chain constant region selected from IgGl, IgG2, IgG3, IgG4, IgM, IgA and IgE heavy chain constant regions or any allelic variation thereof (as discussed in Kabat et ah, 1991, SE
- An antibody of the invention comprises either an amino acid sequence of the IgG2 heavy chain constant region as set forth in SEQ ID NO: 41 or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, or an amino acid sequence of the IgGl heavy chain constant region as set forth in SEQ ID NO: 42 or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the antibodies are monoclonal antibodies, human antibodies, or preferably human monoclonal antibodies.
- the invention provides antibodies comprising a heavy chain and a light chain, wherein the light chain comprises a constant region having an amino acid sequence as set forth in SEQ ID NO: 43 or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, and the light chain variable region comprises an amino acid sequence as set forth in any of SEQ ID NO: 1 through SEQ ID NO. 6, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the antibodies are monoclonal antibodies, human antibodies, or preferably human monoclonal antibodies.
- antibodies of the invention comprise a heavy chain and a light chain, wherein the variable region of the heavy chain comprises an amino acid sequence as set forth in SEQ ID NO: 7 or SEQ ID NO: 8, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the light chain variable region comprises an amino acid sequence as set forth in SEQ ID NO: 1, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- antibodies of the invention comprise a heavy chain and a light chain, wherein the variable region of the heavy chain comprises an amino acid sequence as set forth in SEQ ID NO: 9, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the light chain variable region comprises an amino acid sequence as set forth in SEQ ID NO: 2, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the heavy chain comprises at least one complementarity determining region (CDR) having an amino acid sequence as set forth in any of SEQ ID NO: 27 through SEQ ID NO. 40, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the light chain comprises at least one CDR having an amino acid sequence as set forth in any of SEQ ID NO: 15 through SEQ ID NO. 26, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the invention also provides antibodies that bind specifically to B 7RPl, wherein the heavy chain comprises a variable region comprising an amino acid sequence as set forth in SEQ ID NO: 7 or SEQ ID NO: 8, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, and the light chain comprises a variable region comprising an amino acid sequence as set forth in SEQ ID NO: 1, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the invention provides antibodies that bind specifically to B7RP1, wherein the heavy chain comprises a variable region comprising an amino acid sequence as set forth in SEQ ID NO: 9, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, and the light chain comprises a variable region comprising an amino acid sequence as set forth in SEQ ID NO: 2, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the invention also provides antibodies, comprising a heavy chain and a light chain, wherein the heavy chain comprises a heavy chain variable region, and wherein the heavy chain variable region comprises a sequence that has at least about 75%, at least about 80%, at least about 85%, at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or at least about 99% identity to the amino acid sequence as set forth in any of SEQ ID NO: 7 through SEQ ID NO.
- the light chain comprises a light chain variable region
- the light chain variable region comprises a sequence that has at least about 80%, at least about 85%, at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or at least about 99% identity to the amino acid sequence as set forth in any of SEQ ID NO: 1 through SEQ ID NO. 6, wherein the antibody binds specifically to B7RP1.
- the invention also provides antibodies that bind specifically to B 7RPl, wherein the heavy chain comprises an amino acid sequence as set forth in SEQ ID NO: 44 or SEQ ID NO: 46, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, and the light chain comprises an amino acid sequence as set forth in SEQ ID NO: 45, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the invention also provides antibodies that bind specifically to B7RP1, wherein the heavy chain comprises an amino acid sequence as set forth in SEQ ID NO: 47, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof, and the light chain comprises an amino acid sequence as set forth in SEQ ID NO: 48, or an antigen-binding or* an immunologically functional immunoglobulin fragment thereof.
- the invention provides antibodies, comprising a heavy chain and a light chain, wherein the heavy chain comprises a heavy chain variable region, and wherein the heavy chain variable region comprises at least one CDR having a sequence that has at least about 75%, at least about 80%, at least about 85%, at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or at least about 99% identity to the amino acid sequence as set forth in any of SEQ ID NO: 27 through SEQ ID NO.
- the light chain comprises a light chain variable region
- the light chain variable region comprises at least one CDR having an amino acid sequence that has as least about 80%, at least about 85%, at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or at least about 99% identity to the amino acid sequence as set forth in SEQ ID NO: 15 through SEQ ID NO. 26, wherein the antibody binds specifically to B7RP1.
- the invention also provides single chain antibodies, single chain Fv antibodies, F(ab) antibodies, F(ab)' antibodies and (Fab') 2 antibodies.
- the invention provides a light chain comprising an amino acid sequence as set forth in SEQ ID NO: 15 through SEQ ID NO. 26, or an antigen- binding or an immunologically functional immunoglobulin fragment thereof.
- the invention provides a heavy chain comprising an amino acid sequence as set forth in any of SEQ ID NO: 27 through SEQ ID NO. 40, or an antigen-binding or an immunologically functional immunoglobulin fragment thereof.
- the invention also relates to isolated human antibodies that specifically bind
- the antibody comprises: (a) human heavy chain framework regions, a human heavy chain CDRl region, a human heavy chain CDR2 region, and a human heavy chain CDR3 region; and (b) human light chain framework regions, a human light chain CDRl region, a human light chain CDR2 region, and a human light chain CDR3 region.
- the human heavy chain CDRl region can be the heavy chain CDRl region as shown in any of SEQ ID NO: 27, 30, or 35 and the human light chain CDRl region can be the light chain CDRl region shown in any of SEQ ID NO: 15, 18, or 24.
- the human heavy chain CDR2 region can be the heavy chain CDR2 region as shown in any of SEQ ID NO: 28, 31, 33, 36, or 39, and the human light chain CDR2 region can be the light chain CDR2 as shown in any of SEQ ID NO: 16, 19, or 21.
- the human heavy chain CDR3 region is the heavy chain CDR3 region as shown in any of SEQ ID NO: 29, 32, 34, 37, 38 or 40, and the human light chain CDR3 region is the light chain CDR3 region as shown in any of SEQ ID NO: 17, 20, 22, 23, 25, or 26.
- the antibodies of the invention are characterized by the ability to bind specifically to B7RP1.
- antibodies of the invention have the capacity to antagonize at least one in vitro and/or in vivo activity associated with B 7RPl polypeptides.
- the invention provides isolated anti-human B7RP1 human antibodies with high affinity binding to B7RP1 polypeptides, wherein the antibodies bind to a human B7RP1 polypeptide and dissociates from the human B7RP1 polypeptide with a dissociation constant (K D ) of about 1(T 6 M, 1(T 7 M 5 lO "8 M, 1(T 9 M, lO '10 M, 1O 'U M, 10 "12 M, or less, as determined using KinExA, or which inhibit B7RP1 induced survival in an in vitro neutralization assay with an EC 5 Q of about 10 "6 M, 10 "7 M, 10 "8 M, 10 '9 M, 10 40 M, 10 41 M 5 10 "12 M 5 or less.
- the invention also provides isolated human antibodies or an antigen-binding or immunologically functional immunoglobulin fragments thereof that bind specifically to B 7RP I 5 wherein the antibodies or fragments comprise a heavy chain variable region comprising a heavy chain CDRl, CDR2, and CDR3, wherein: a) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 27, the heavy chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 28, and the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 29; b) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 30, the heavy chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 31, and the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 32; c) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO:
- the heavy chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 33, and the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 34; d) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 35, the heavy chain CDR2 has an amino acid sequence as set forth in
- the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 37; e) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 27, the heavy chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 33, and the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 38; or f) the heavy chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 35, the heavy chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 39, and the heavy chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 40.
- the invention also provides an isolated human antibody or an antigen-binding or an immunologically functional immunoglobulin fragment thereof that binds specifically to B7RP1, wherein the antibody or fragment comprises a light chain variable region comprising a light chain CDRl, CDR2, and CDR3, wherein: a) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 15, the light chain CDR2 has an amino acid sequence as set forth in SEQ
- the light chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 17; b) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 18, the light chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 19, and the light chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 20; c) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 15, the light chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 21, and the light chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 22; d) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 18, the light chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 19, and the light chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 23; e) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO:
- the light chain CDR2 has an amino acid sequence as set forth in SEQ ID NO: 16 and the light chain CDR 3 has an amino acid sequence as set forth in SEQ ID NO: 25; or f) the light chain CDRl has an amino acid sequence as set forth in SEQ ID NO: 24, the light chain CDR2 has an amino acid sequence as set forth in SEQ
- the invention also provides antibodies that compete with binding of the antibodies described herein to B7RP1.
- a competitive antibody of the invention competes with binding of an antibody that comprises any of SEQ ID NO: 1-40 to human B7RP1.
- polynucleotide sequences that encode anti- human B7RP1 human antibodies vectors comprising the polynucleotide sequences encoding anti-human B7RP1 human antibodies, host cells transformed with vectors incorporating polynucleotides that encode anti-human B7RP1 human antibodies, formulations comprising anti-human B7RP1 human antibodies and methods of making and using same.
- the invention also provides methods for detecting B7RP1 in a biological sample, comprising the step of contacting the sample with an antibody of the invention or antigen-binding fragment thereof.
- An anti-B7RPl antibody of the invention may be employed in any known assay method, such as competitive binding assays, direct and indirect sandwich assays, immunoprecipitation assays and enzyme- linked immunosorbent assays (ELISA) (See, Sola, 1987, Monoclonal Antibodies: A Manual of Techniques, pp. 147-158, CRC Press, Inc.) for the detection and quantitation of B7RP1.
- the antibodies can bind B7RP1 with an affinity that is appropriate for the assay method being employed.
- the invention provides methods for treating a disease associated with increased production of B7RP1, increased sensitivity to B 7RPl, and/or diseases related to control of T-cell responses, comprising the step of administering a pharmaceutically effective amount of a pharmaceutical composition comprising at least one antibody of the invention or an antigen-binding or an immunologically functional immunoglobulin fragment thereof to an individual in need thereof.
- Figure IA depicts the 16H antibody variable region sequence (SEQ ED NO: 7) and the corresponding 16H variable region germline (16Hg) sequence (SEQ ID NO: 8).
- Figure IB depicts results of co-stimulation assays using anti-CD3 and hB7RPl-Fc fusion protein demonstrating that 16Hg retains its biological activities compared with 16H.
- Figure 2 shows the results of Biacore ® binding assays with 16H, 16Hg, and 5D antibodies.
- Figure 3 shows the results of KinExA binding assay with 5D antibody.
- Figure 4 shows the results of KinExA binding assay with 2H antibody.
- Figure 5 shows the results of KinExA binding assay with 2H germline (2Hg) antibody.
- Figure 6 depicts the results of binding-competition assays showing that 16H antibody competes away binding of ICOS-Fc on B7RP-1, analyzed by flow cytometry.
- Figure 7 depicts a summary of a B7RP-1 single nucleotide polymorphism (SNP) analysis.
- Figure 8 depicts a summary of the analysis of a set of anti-human B7RP-1 monoclonal antibodies in ELISA competition assays. Values shown are IC 50 S for inhibition of binding of an ICOS-Fc fusion protein.
- Figure 9A shows fluorescent staining of B7RP1 extracellular domain (ECD) with labeled 16H, 5D, and ICOS antibodies.
- Figure 9B shows similar binding efficacy of 16H and 5D antibodies to a
- Figure 9C depicts the results of co-stimulation assays with 16H or 5D antibodies and SNP variants.
- Figure 1OA shows plate co-stimulation assay results with 1B7V2 monoclonal antibodies compared with a number of different anti-murine B7RP-1 monoclonal antibodies.
- Figures 1OB, 1OC, and 1OD show the results of antigen challenge experiments, analyzed for antigen-specific serum IgM (Figure 10B), IgG2a (Figure 10C), and IgGl ( Figure 10D).
- Figure 11 depicts ELISA results demonstrating that serum IL-5 levels are repressed by 1B7V2 antibodies.
- Figure 12A shows that 16H antibodies can bind to cynomolgus monkey B7RP1 (right panel) and human B7RP1 (left panel).
- Figure 12B shows that 16H, 16Hg, and 5D antibodies can inhibit cynomolgus monkey B7RPl/ICOS-dependent T cell activation.
- Figure 13A depicts individual cynomolgus monkey and group mean titer values at day 53 and day 57 after secondary challenge with tetanus toxoid on day 42 in animals treated with 16H antibodies.
- Figure 13B depicts individual cynomolgus monkey and group mean titer values at day 53 and day 57 after secondary challenge with tetanus toxoid on day 42 in animals treated with 5D antibodies.
- biological property in reference to an antibody of the present invention are used interchangeably herein and include, but are not limited to, epitope affinity and specificity (e.g., anti-human B7RP1 human antibody binding to human B7RP1), ability to antagonize the activity of the targeted polypeptide (e.g., B7RP1 activity), the in vivo stability of the antibody, and the immunogenic properties of the antibody.
- epitope affinity and specificity e.g., anti-human B7RP1 human antibody binding to human B7RP1
- B7RP1 activity e.g., B7RP1 activity
- Other identifiable biological properties or characteristics of an antibody recognized in the art include, for example, cross-reactivity, (i.e., with non-human homologs of B7RP1, or with other proteins or tissues, generally), and ability to preserve high expression levels of protein in mammalian cells.
- isolated polynucleotide shall mean a polynucleotide of genomic DNA, cDNA, RNA, or synthetic origin or some combination thereof, which by virtue of its origin the isolated polynucleotide (1) is not associated with all or a portion of a polynucleotide with which the isolated polynucleotide is found in nature, (2) is linked to a polynucleotide to which it is not linked in nature, or (3) does not occur in nature as part of a larger sequence.
- polynucleotide as referred to herein means single-stranded or double-stranded nucleic acid polymers of at least 10 nucleotides in length.
- the nucleotides comprising the polynucleotide can be ribonucleotides or deoxyribonucleotides or a modified form of either type of nucleotide.
- Said modifications include base modifications such as bromuridine, ribose modifications such as arabinoside and 2',3'-dideoxyribose and internucleotide linkage modifications such as phosphorothioate, phosphorodithioate, phosphoroselenoate, phosphorodiselenoate, phosphoroanilothioate, phoshoraniladate and phosphoroamidate.
- base modifications such as bromuridine, ribose modifications such as arabinoside and 2',3'-dideoxyribose and internucleotide linkage modifications such as phosphorothioate, phosphorodithioate, phosphoroselenoate, phosphorodiselenoate, phosphoroanilothioate, phoshoraniladate and phosphoroamidate.
- polynucleotide specifically includes single and double stranded forms of DNA or RNA.
- oligonucleotide includes naturally occurring, and modified nucleotides linked together by naturally occurring, and/or non-naturally occurring oligonucleotide linkages.
- Oligonucleotides are a polynucleotide subset comprising members that are generally single-stranded and have a length of 200 nucleotides or fewer. In certain embodiments, oligonucleotides are 10 to 60 nucleotides in length. In certain embodiments, oligonucleotides are 12, 13, 14, 15, 16, 17, 18, 19, or 20 to 40 nucleotides in length. Oligonucleotides may be single stranded or double stranded, e.g. for use in the construction of a genetic mutant. Oligonucleotides of the invention may be sense or antisense oligonucleotides with reference to a protein-coding sequence.
- nucleotides includes deoxyribonucleotides and ribonucleotides.
- modified nucleotides includes nucleotides with modified or substituted sugar groups and the like.
- oligonucleotide linkages includes oligonucleotide linkages such as phosphorothioate, phosphorodithioate, phosphoroselenoate, phosphorodiselenoate, phosphoroanilothioate, phoshoraniladate, phosphoroamidate, and the like. See, e.g., LaPlanche et al., 1986, Nucl.
- An oligonucleotide can include a detectable label to enable detection of the oligonucleotide or hybridization thereof.
- isolated protein means that a subject protein (1) is free of at least some other proteins with which it would be found in nature, (2) is essentially free of other proteins from the same source, e.g., from the same species, (3) is expressed by a cell from a different species, (4) has been separated from at least about 50 percent of polynucleotides, lipids, carbohydrates, or other materials with which it is associated in nature, (5) is not associated (by covalent or noncovalent interaction) with portions of a protein with which the "isolated protein" is associated in nature, (6) is operably associated (by covalent or noncovalent interaction) with a polypeptide with which it is not associated in nature, or (7) does not occur in nature.
- Such an isolated protein can be encoded by genomic DNA, cDNA, mRNA or other RNA, of synthetic origin, or any combination thereof.
- the isolated protein is substantially free from proteins or polypeptides or other contaminants that are found in its natural environment that would interfere with its use (therapeutic, diagnostic, prophylactic, research or otherwise).
- an “isolated” antibody is one that has been identified and separated and/or recovered from a component of its natural environment. Contaminant components of its natural environment are materials that would interfere with diagnostic or therapeutic uses for the antibody, and may include enzymes, hormones, and other proteinaceous or non-proteinaceous substances.
- the antibody is purified (1) to greater than 95% or greater than 99% by weight of antibody as determined by the Lowry method, (2) to a degree sufficient to obtain at least 15 residues of N-terminal or internal amino acid sequence by use of a spinning cup sequenator, or (3) to homogeneity by SDS-PAGE under reducing or nonreducing conditions using Coomassie blue or silver stain.
- Isolated antibody includes the antibody in situ within recombinant cells since at least one component of the antibody's natural environment will not be present.
- polypeptide or protein means molecules having the sequence of native proteins, that is, proteins produced by naturally-occurring and specifically non- recombinant cells, or genetically-engineered or recombinant cells, and comprise molecules having the amino acid sequence of the native protein, or molecules having deletions from, additions to, and/or substitutions of one or more amino acids of the native sequence.
- polypeptide and protein specifically encompass anti- B 7RPl antibodies, or sequences that have deletions from, additions to, and/or substitutions of one or more amino acid of an anti- B7RP1 antibody.
- polypeptide fragment refers to a polypeptide that has an amino- terminal deletion, a carboxyl-terminal deletion, and/or an internal deletion. In certain embodiments, fragments are at least 5 to about 500 amino acids long. It will be appreciated that in certain embodiments, fragments are at least 5, 6, 8, 10, 14, 20, 50, 70, 100, 110, 150, 200, 250, 300, 350, 400, or 450 amino acids long. Particularly useful polypeptide fragments include functional domains, including binding domains particularly antigen-binding domains, especially wherein the antigen is an epitope of human B7RP1. In the case of an anti-B7RPl antibody, useful fragments include but are not limited to a CDR region, a variable domain of a heavy or light chain, a portion of an antibody chain or just its variable region including two CDRs, and the like.
- specific binding agent refers to a naturally occurring or non- naturally occurring molecule that specifically binds to a target.
- specific binding agents include, but are not limited to, proteins, peptides, nucleic acids, carbohydrates, and lipids.
- a specific binding agent is an antibody.
- a specific binding agent to B7RP1 refers to a specific binding agent that specifically binds any portion of B7RP1.
- a specific binding agent to B7RP1 is an antibody that binds specifically to B7RP1.
- an antibody "binds specifically" to a target if the antibody, when labeled, can be competed away from its target by the corresponding non-labeled antibody.
- immunologically functional immunoglobulin fragment refers to a polypeptide fragment that contains at least the CDRs of the immunoglobulin heavy and light chains.
- An immunologically functional immunoglobulin fragment of the invention is capable of binding to an antigen.
- the antigen is a ligand that specifically binds to a receptor.
- binding of an immunologically functional immunoglobulin fragment of the invention prevents binding of the ligand to its receptor, interrupting the biological response resulting from ligand binding to the receptor.
- an immunologically functional immunoglobulin fragment of the invention binds specifically to B7RP1.
- the fragment binds specifically to human B7RP1.
- naturally-occurring or “native” as used herein and applied to an object refers to the fact that the object can be found in nature.
- a polypeptide or polynucleotide sequence that is present in an organism (including viruses) that can be isolated from a source in nature and that has not been intentionally modified by man is naturally-occurring.
- non-naturally occurring or “non-native” as used herein refers to a material that is not found in nature or that has been structurally modified or synthesized by man.
- non-naturally occurring can refer to a variant, such as a polynucleotide variant that can be produced using art-known mutagenesis techniques, or a polypeptide variant produced by such a polynucleotide variant.
- variants include, for example, those produced by nucleotide substitutions, deletions or additions that may involve one or more nucleotides.
- Polynucleotide variants can be altered in coding or non-coding regions or both. Alterations in the coding regions may produce conservative or non- conservative amino acid substitutions, deletions, or additions. Especially certain among these are silent substitutions, additions, deletions, and conservative substitutions, which do not alter the properties and activities of a B7RP1 antibody of the invention.
- One of skill in the art can readily determine how to generate such a variant using methods well known in the art.
- operably linked means that the components to which the term is applied are in a relationship that allows them to carry out their inherent functions under suitable conditions.
- a control sequence "operably linked" to a protein coding sequence is ligated thereto so that expression of the protein coding sequence is achieved under conditions compatible with the transcriptional activity of the control sequences.
- control sequence refers to polynucleotide sequences that can effect expression, processing or intracellular localization of coding sequences to which they are operably linked. The nature of such control sequences may depend upon the host organism.
- control sequences for prokaryotes may include a promoter, ribosomal binding site, and transcription termination sequence.
- control sequences for eukaryotes may include promoters comprising one or a plurality of recognition sites for transcription factors, transcription enhancer sequences, transcription termination sequences and polyadenylation sequences.
- control sequences can include leader sequences and/or fusion partner sequences.
- vector includes a nucleic acid molecule capable of carrying into a cell another nucleic acid to which it has been linked.
- plasmid refers to a circular double stranded DNA loop into which additional DNA segments may be ligated.
- viral vector Another type of vector is a viral vector, wherein additional DNA segments may be ligated into the viral genome.
- Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors).
- vectors e.g., non-episomal mammalian vectors
- vectors can be integrated into the genome of a host cell upon introduction into the host cell and thereby are replicated along with the host genome.
- certain vectors are capable of directing the expression of genes to which they are operatively linked.
- Such vectors are referred to herein as "recombinant expression vectors" (or simply, "expression vectors”).
- expression vectors useful in the practice of recombinant DNA techniques are often in the form of plasmids.
- plasmid and vector may be used interchangeably as the plasmid is the most commonly used form of vector.
- the invention is intended to include such other forms of expression vectors, such as viral vectors (e.g., replication defective retroviruses, adenoviruses and adeno-associated viruses), which serve equivalent functions.
- recombinant host cell includes a cell into which a recombinant expression vector has been introduced. It will be understood by those of skill in the art that such terms are intended to refer not only to the particular subject cell but to the progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term "host cell” as used herein.
- host expression systems can be used to express the antibodies of the present invention including bacterial, yeast, baculoviral and mammalian expression systems (as well as phage display expression systems).
- An example of a suitable bacterial expression vector is pUC19.
- a host cell is transfected with one or more recombinant expression vectors carrying DNA fragments encoding the immunoglobulin light and heavy chains of the antibody such that the light and heavy chains are expressed in the host cell and can be secreted into the medium in which the host cells are cultured, from which medium the antibodies can be recovered.
- Standard recombinant DNA methodologies are used to obtain antibody heavy and light chain genes, incorporate these genes into recombinant expression vectors and introduce the vectors into host cells, such as those described in Sambrook et al, 2001, MOLECULAR CLONING, A LABORATORY MANUAL, Cold Spring Harbor Laboratories, Ausubel, F.M. et al. (eds.), CURRENT PROTOCOLS IN MOLECULAR BIOLOGY, Greene Publishing Associates, (1989) and in U.S. Patent No. 4,816,397 to Boss et al.
- transduction is used to refer to the transfer of genes from one bacterium to another, usually by a phage. "Transduction” also refers to the acquisition and transfer of eukaryotic cellular sequences by retroviruses.
- transfection is used to refer to the uptake of foreign or exogenous DNA by a cell, and a cell has been "transfected" when the exogenous DNA has been introduced inside the cell membrane.
- transfection techniques are well known in the art and are disclosed herein. See, e.g., Graham et al, 1973, Virology 52:
- transformation refers to a change in a cell's genetic characteristics, and a cell has been transformed when it has been modified to contain a new DNA.
- a cell is transformed where it is genetically modified from its native state.
- the transforming DNA may recombine with DNA from the cell by physically integrating into a chromosome of the cell, or may be maintained transiently as an episomal element without being replicated, or may replicate independently as a plasmid.
- a cell is considered to have been stably transformed when the DNA is replicated with the division of the cell.
- antigen refers to a molecule or a portion of a molecule capable of being bound by a selective binding agent, such as an antibody, and additionally capable of being used in an animal to produce antibodies capable of binding to an epitope of that antigen.
- a selective binding agent such as an antibody
- An antigen may have one or more epitopes.
- antibody variants include glycosylation variants wherein the number and/or type of glycosylation site has been altered compared to the amino acid sequences of the parent polypeptide.
- protein variants comprise a greater or a lesser number of N-linked glycosylation sites than the native protein.
- An N-linked glycosylation site is characterized by the sequence: Asn- Xaa-Ser or Asn-Xaa-Thr, wherein the amino acid residue designated as Xaa may be any amino acid residue except proline.
- the substitution of amino acid residues to create this sequence provides a potential new site for the addition of an N-linked carbohydrate chain. Alternatively, substitutions that eliminate this sequence will remove an existing N-linked carbohydrate chain.
- N-linked carbohydrate chains wherein one or more N-linked glycosylation sites (typically those that are naturally occurring) are eliminated and one or more new N- linked sites are created.
- Additional antibody variants include cysteine variants wherein one or more cysteine residues are deleted from or substituted for another amino acid ⁇ e.g., serine) compared to the parent amino acid sequence. Cysteine variants may be useful when antibodies must be refolded into a biologically active conformation such as after the isolation of insoluble inclusion bodies. Cysteine variants generally have fewer cysteine residues than the native protein, and typically have an even number to minimize interactions resulting from unpaired cysteines.
- antibody variants can include antibodies comprising a modified Fc fragment or a modified heavy chain constant region.
- An Fc fragment which stands for "fragment that crystallizes," or a heavy chain constant region can be modified by mutation to confer on an antibody altered binding characteristics. See, for example, Burton and Woof, 1992, Advances in Immunology 51: 1-84; Ravetch and Bolland, 2001, Annu. Rev. Immunol. 19: 275-90; Shields et ah, 2001, Journal of Biol. Chem 276: 6591-6604; Telleman and Junghans, 2000, ⁇ Immunology 100: 245-251; Medesan et al, 1998, Eur. J. Immunol.
- Such mutations can include substitutions, additions, deletions, or any combination thereof, and are typically produced by site-directed mutagenesis using one or more mutagenic oligonucleotide(s) according to methods described herein, as well as according to methods known in the art (see, for example, Sambrook et ah, MOLECULAR CLONING: A LABORATORY MANUAL, 3rd Ed., 2001, Cold Spring Harbor, N.Y.and Berger and Kimmel, METHODS IN ENZYMOLOGY, Volume 152, Guide to Molecular Cloning Techniques, 1987, Academic Press, Inc., San Diego, CA., which are incorporated herein by reference).
- amino acid substitutions may (1) reduce susceptibility to proteolysis, (2) reduce susceptibility to oxidation, (3) alter binding affinity, and/or (4) confer or modify other physicochemical or functional properties on such polypeptides.
- single or multiple amino acid substitutions may be made in the naturally occurring sequence (in certain embodiments, in the portion of the polypeptide outside the domain(s) forming intermolecular contacts).
- a conservative amino acid substitution typically does not substantially change the structural characteristics of the parent sequence (e.g., a replacement amino acid should disrupt or tend to disrupt secondary structure that characterizes a parent sequence, such as a helix).
- Antibody or “antibody peptide(s)” refer to an intact antibody, or a binding fragment thereof that competes with the intact antibody for specific binding. In certain embodiments, binding fragments are produced by recombinant DNA techniques. In additional embodiments, binding fragments are produced by enzymatic or chemical cleavage of intact antibodies. Binding fragments include, but are not limited to, F(ab), F(ab'), F(ab')2, Fv, and single-chain antibodies.
- the invention provides antibodies that comprise a heavy chain and a light chain, wherein the heavy and light chains together form an antigen binding structure capable of specifically binding B7RP1.
- a full-length heavy chain includes a variable region domain, V H , and three constant region domains, C H I, C H 2, and C H 3.
- the V H domain is at the amino-terminus of the polypeptide
- the C H 3 domain is at the carboxyl-terminus.
- the term "heavy chain”, as used herein, encompasses a full- length heavy chain and fragments thereof.
- a full-length light chain includes a variable region domain, V L , and a constant region domain, C L - Like the heavy chain, the variable region domain of the light chain is at the amino-terminus of the polypeptide.
- a F(ab) fragment is comprised of one light chain and the C H I and variable regions of one heavy chain.
- the heavy chain of a F(ab) molecule cannot form a disulfide bond with another heavy chain molecule.
- a F(ab') fragment contains one light chain and one heavy chain that contains more of the constant region, between the C H I and C H 2 domains, such that an interchain disulfide bond can be formed between two heavy chains to form a F(ab') 2 molecule.
- the Fv region comprises the variable regions from both the heavy and light chains, but lacks the constant regions.
- Single-chain antibodies are Fv molecules in which the heavy and light chain variable regions have been connected by a flexible linker to form a single polypeptide chain, which forms an antigen-binding region.
- Single chain antibodies are discussed in detail in International Patent Application Publication No. WO 88/01649 and U.S. Patent Nos. 4,946,778 and 5,260,203.
- a bivalent antibody other than a "multispecif ⁇ c" or “multifunctional” antibody in certain embodiments, is understood to comprise binding sites having identical antigenic specificity.
- an antibody substantially inhibits adhesion of a ligand to a receptor when an excess of antibody reduces the quantity of ligand bound to receptor by at least about 20%, 40%, 60%, 80%, 85%, or more (as measured, inter alia, using an in vitro competitive binding assay).
- neutralizing antibody is meant an antibody molecule that is able to block or substantially reduce an effector function of a target antigen to which it binds.
- a “neutralizing" anti-B7RPl antibody is capable of blocking or substantially reducing an effector function, such as receptor binding and/or elicitation of a cellular response, of B7RP1.
- “Substantially reduce” is intended to mean at least about 60%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, or at least about 90% reduction of an effector function of the target antigen (e.g., human B7RP1).
- epitope includes any site on an antigen that is capable of specific • binding to an immunoglobulin or T-cell receptor.
- epitope determinants include chemically active surface groupings of molecules such as amino acids, sugar side chains, phosphoryl groups, or sulfonyl groups, and, in certain embodiments, may have specific three-dimensional structural characteristics, and/or specific charge characteristics.
- An epitope is a region of an antigen that is bound by an antibody.
- an antibody is said to specifically bind an antigen when it preferentially recognizes its target antigen in a complex mixture of proteins and/or macromolecules.
- an antibody is said to specifically bind an antigen when the equilibrium dissociation constant is about 10 ⁇ 6 M, 10 "7 M 5 Kr 8 M 5 10- 9 M 5 10 40 M, 10 41 M 5 10 '12 M 5 or less than about 10 "12 M.
- an antibody binds "essentially the same epitope" as a reference antibody, when the two antibodies recognize identical or sterically overlapping epitopes.
- the most widely used and rapid methods for determining whether two antibodies bind to identical or sterically overlapping epitopes are competition assays, which can be configured in all number of different formats, using either labeled antigen or labeled antibody.
- the antigen is immobilized on a substrate, and the ability of unlabeled antibodies to block the binding of labeled antibodies is measured using radioactive isotopes or enzyme labels.
- agent is used herein to denote a chemical compound, a mixture of chemical compounds, a biological macromolecule, or an extract made from biological materials.
- label refers to incorporation of a detectable marker, e.g., by incorporation of a radiolabeled amino acid or attachment to a polypeptide of biotin moieties that can be detected by labeled avidin ⁇ e.g., streptavidin comprising a detectable marker such as a fluorescent marker, a chemiluminescent marker or an enzymatic activity that can be detected by optical or colorimetric methods).
- the label can also be therapeutic.
- Various methods of labeling polypeptides and glycoproteins are known in the art and may be used advantageously in the methods disclosed herein.
- labels for polypeptides include, but are not limited to radioisotopes or radionuclides such as 3 H, 14 C, 15 N, 35 S 5 90 Y, 99m Tc, 111 In, 125 I, and 131 I, fluorescent labels (e.g., fluorescein isothiocyanate or FITC, rhodamine, or lanthanide phosphors), enzymatic labels (e.g., horseradish peroxidase, ⁇ -galactosidase, luciferase, alkaline phosphatase), chemiluminescent labels, hapten labels such as biotinyl groups, and predetermined polypeptide epitopes recognized by a secondary reporter (e.g., leucine zipper pair sequences, binding sites for secondary antibodies, metal binding domains, or epitope tags).
- labels are attached by spacer arms (such as (CH 2 ) n , where n ⁇ about 20) of various lengths to
- biological sample includes, but is not limited to, any quantity of a substance from a living thing or formerly living thing.
- living things include, but are not limited to, humans, mice, monkeys, rats, rabbits, and other animals.
- substances include, but are not limited to, blood, serum, urine, cells, organs, tissues, bone, bone marrow, lymph nodes, and skin.
- pharmaceutical agent or drug refers to a chemical compound or composition capable of inducing a desired therapeutic effect when properly administered to a patient.
- pharmaceutically effective amount in reference to a pharmaceutical composition comprising one or a plurality of the antibodies of the invention is understood to mean, according to the invention, an amount of the said pharmaceutical composition that is capable of abolishing, in a patient, the decrease in the sensitivity threshold to external stimuli with a return of this sensitivity threshold to a level comparable to that observed in healthy subjects.
- a “disorder” is any condition that would benefit from treatment according to the present invention.
- “Disorder” and “condition” are used interchangeably herein and include chronic and acute immune system disorders or immune system diseases associated with inappropriate immune response, including those pathological conditions which predispose the mammal to the disorder in question.
- a number of conditions and disorders that would benefit from the treatment according to the present invention are described, for example, in International Patent Application No. PCT/USOO/01871 (Publication No. WO 00/46240), the disclosure of which is incorporated by reference in its entirety.
- immune system disease and “immune system condition” encompass any medical condition or disorder associated with increased levels of B7RP1, increased sensitivity to B7RP1, or T-cell mediated diseases, including, but not limited to, autoimmune disease, graft survival, bone marrow and organ transplantation, alensitization due to blood transfusions, toxic shock syndrome, T- cell dependent B-cell mediated diseases, chronic inflammatory diseases associated with chronic immune cell dysfunction, lymphoproliferative disorders (such as multiple myeloma, Waldenstom's macroglobulinemia, and cr oglobulinemias), and cancer.
- Non-limiting examples of autoimmune diseases include systemic lupus erythematosis, rheumatoid arthritis, immune thrombocytopenic purpura (ITP), multiple sclerosis, diabetes, and psoriasis.
- Non-limiting examples of chronic inflammatory diseases include inflammatory bowel disease (such as Crohn's disease and ulcerative colitis), Grave's disease, Hashimoto's thyroiditis, and diabetes mellitus.
- immune system disease and “immune system condition” also encompass any clinical condition that would be ameliorated by the inhibition of antibody production, such as hypersensitivity reactions.
- Hypersensitivity reactions can be caused, for example, by hay fever, allergies, asthma, atopy, and acute edema.
- Non-limiting examples of diseases that cause antibody-mediated hypersensitivity reactions include systemic lupus erythematosis, arthritis (such as rheumatoid arthritis, reactive arthritis, psoriatic arthritis), nephropathies (such as glomerulo-nephritis, membranous, mesangiocapillary, focal segmental, focal necrotizing, crescentic, and proliferative nephropathies such as tubulopathies), skin disorders (such as pemphigus and pemphigoid, erythema nodosum), endocrinopathies (such as thyroiditis, Grave's disease, Hashimoto's disease, insulin dependent diabetes mellitus), various pneumopathies (such as extrinsic alveolitis), various vasculopathies, coeliac disease, diseases with aberrant production of IgA, many anemias and thrombocytopenias, Guillain-Barre Syndrome, and myasthenia gravis.
- the terms "effective amount” and "therapeutically effective amount” when used with reference to a vehicle- or a pharmaceutical composition comprising one or more anti-human B 7RPl human antibodies refers to an amount or dosage sufficient to produce a desired result (i.e., where for therapy with the vehicle- or anti-human B7RP1 human antibodies of the present invention the desired result is the desired modulation of T-cell responses, for example) or to support an observable decrease in the level of one or more biological activities of B 7RPl. More specifically, a therapeutically effective amount is an amount of the anti-human B7RP1 human antibody(ies) sufficient to inhibit, for some period of time, one or more of the clinically defined pathological processes associated with the condition at issue, e.g.
- an "effective amount" of an anti-B7RPl antibody may modulate T- cell responses in a patient.
- control and grammatical variants thereof, are used to refer to the prevention, partial or complete inhibition, reduction, delay or slowing down of an unwanted event, e.g. immune response.
- the effective amount may vary depending on the specific vehicle- or anti-human B7RP1 human antibody(ies) selected, and is also dependent on a variety of factors and conditions related to the subject to be treated and the severity of the disorder.
- the vehicle- or anti-human B7RP1 human antibody(ies) is to be administered in vivo, factors such as the age, weight and health of the patient as well as dose response curves and toxicity data obtained in preclinical animal work would be among those considered. If the agent is to be contacted with the cells in vitro, one would also design a variety of pre-clinical in vitro studies to assess such parameters as uptake, half-life, dose, toxicity, etc. The determination of an effective amount or a therapeutically effective amount for a given agent is well within the ability of those skilled in the art.
- B7 related protein-1 and "B7RP1” are defined as all mammalian species of native sequence B7RP1, which is described in International Patent Application Publication No. WO 00/46240, which is incorporated herein by reference.
- substantially pure or substantially purified means a compound or species that is the predominant species present (i.e., on a molar basis it is more abundant than any other individual species in the composition).
- a substantially purified fraction is a composition wherein the species comprises at least about 50 percent (on a molar basis) of all macromolecular species present.
- a substantially pure composition will comprise more than about 80%, 85%, 90%, 95%, or 99% of all macromolar species present in the composition.
- the species is purified to essential homogeneity (contaminant species cannot be detected in the composition by conventional detection methods) wherein the composition consists essentially of a single macromolecular species.
- patient includes human and animal subjects.
- Treatment or “treat” refers to both therapeutic treatment and prophylactic or preventative measures. Those in need of treatment include those already with the disorder as well as those prone to have the disorder or those in which the disorder is to be prevented.
- B7RP1 may be used to treat immune system disorders and immune system diseases, including but not limited to, those mentioned above.
- the invention provides nucleic acids comprising nucleotide sequences encoding amino acid sequences for heavy and light chain immunoglobulin molecules, particularly sequences corresponding to the variable regions thereof. Particular embodiments of this aspect of the invention are sequences corresponding to complementarity determining regions (CDRs), specifically from CDRl through CDR3, of the heavy and light chains provided by the invention.
- CDRs complementarity determining regions
- the invention provides hybridoma cells and cell lines that express the immunoglobulin molecules and antibodies, such as monoclonal antibodies of the invention.
- the invention also provides biologically and immunologically purified preparations of antibodies, such as monoclonal antibodies raised against and having biological and immunological specificity for binding to human B7RP1.
- human antibody includes antibodies having variable and constant regions substantially corresponding to human germline immunoglobulin sequences.
- human antibodies are produced in non-human mammals, including, but not limited to, rodents, such as mice and rats, and lagomorphs, such as rabbits.
- human antibodies are produced in hybridoma cells.
- human antibodies are produced recombinantly.
- recombinant in reference to an antibody includes antibodies that are prepared, expressed, created or isolated by recombinant means. Representative examples include antibodies expressed using a recombinant expression vector transfected into a host cell, antibodies isolated from a recombinant, combinatorial human antibody library, antibodies isolated from an animal (e.g., a mouse) that is transgenic for human immunoglobulin genes (see e.g., Taylor, et al., 1992, Nucl. Acids Res. 20:6287-6295); or antibodies prepared, expressed, created or isolated by any means that involves splicing of human immunoglobulin gene sequences to other
- Such recombinant human antibodies have variable and constant regions derived from human germline immunoglobulin sequences.
- the effector portion of the antibody is human, it may interact better with the other parts of the human immune system (e.g., destroy the target cells more efficiently by complement-dependent cytotoxicity (CDC) or antibody-dependent cellular cytotoxicity (ADCC)); 2) the human immune system should not recognize the human antibody as foreign, and, therefore the antibody response against such an injected antibody should be less than against a totally foreign non-human antibody or a partially foreign chimeric antibody;
- CDC complement-dependent cytotoxicity
- ADCC antibody-dependent cellular cytotoxicity
- Fully human antibodies of the invention can be used in the treatment of diseases and disorders associated with inappropriate immune response, the treatment thereof requiring repeated antibody administration.
- one particular advantage of the anti-B7RPl antibodies of the invention is that the antibodies are fully human and can be administered to patients in a non-acute manner while minimizing adverse reactions commonly associated with human anti-mouse antibodies or other previously described non-fully human antibodies from non-human species.
- mice can engineer mouse strains deficient in mouse antibody production with large fragments of the human Ig loci so that such mice produce human antibodies in the absence of mouse antibodies.
- Large human Ig fragments may preserve the large variable gene diversity as well as the proper regulation of antibody production and expression.
- the reproduced human antibody repertoire in these mouse strains yields high affinity antibodies against any antigen of interest, including human antigens.
- antigen-specific human MAbs with the desired specificity may be produced and selected.
- Transgenic animals can also be used to produce human antibodies in the absence of endogenous immunoglobulin production.
- transfer of the human germ-line immunoglobulin gene array in such germ-line mutant mice will result in the production of human antibodies upon antigen challenge (see, e.g., Jakobovits et al, 1993, Proc. Natl. Acad ScL USA 90:2551-2555; Jakobovits et al, 1993, Nature 362:255-258; Bruggemann et ah, 1993, Year in Immun.
- Human antibodies can also be produced in phage display libraries (Hoogenboom and Winter, 1992, J. MoI. Biol 227:381; Marks et al, 1991, J. MoI Biol. 222:581).
- Recombinant human antibodies may also be subjected to in vitro mutagenesis (or, when an animal transgenic for human Ig sequences is used, in vivo somatic mutagenesis) and, thus, the amino acid sequences of the VH and VL regions of the recombinant antibodies are sequences that, while derived from those related to human germline VH and VL sequences, may not naturally exist within the human antibody germline repertoire in vivo.
- the skilled artisan can use constant regions from species other than human along with the human variable region(s) in such mice to produce chimeric antibodies.
- a bispecific or bifunctional antibody typically is an artificial hybrid antibody having two different heavy chain/light chain pairs and two different binding sites.
- Bispecific antibodies may be produced by a variety of methods including, but not limited to, fusion of hybridomas or linking of F(ab') fragments. See, e.g., Songsivilai & Lachmann, 1990, CWn. Exp Immunol 79: 315-321; Kostelny et al, 1992, J. Immunol. 148:1547-1553.
- the invention provides antibodies that bind to human B7RP1. These antibodies can be produced by immunization with full-length B7RP1 or fragments thereof.
- the antibodies of the invention can be polyclonal or monoclonal, and/or may be recombinant antibodies.
- antibodies of the invention are human antibodies prepared, for example, by immunization of transgenic animals capable of producing human antibodies (see, for example, International Patent Application, Publication WO 93/12227).
- the complementarity determining regions (CDRs) of the light chain and heavy chain variable regions of anti- B7RP1 antibodies of the invention can be grafted to framework regions (FRs) from the same, or another, species.
- the CDRs of the light chain and heavy chain variable regions of anti-B7RPl antibody may be grafted to consensus human FRs.
- consensus human FRs FRs from several human heavy chain or light chain amino acid sequences are aligned to identify a consensus amino acid sequence.
- the FRs of the anti-B7RPl antibody heavy chain or light chain can be replaced with the FRs from a different heavy chain or light chain.
- Rare amino acids in the FRs of the heavy and light chains of anti-B7RPl antibody typically are not replaced, while the rest of the FR amino acids can be replaced. Rare amino acids are specific amino acids that are in positions in which they are not usually found in FRs.
- the grafted variable regions from anti-B7RPl antibodies of the invention can be used with a constant region that is different from the constant region of anti-B7RPl antibody. Alternatively, the grafted variable regions are part of a single chain Fv antibody. CDR grafting is described, e.g., in U.S. Patent Nos. 6,180,370, 5,693,762, 5,693,761, 5,585,089, and 5,530,101, which are hereby incorporated by reference for any purpose.
- Antibodies of the invention can be prepared using transgenic mice that have a substantial portion of the human antibody producing locus inserted in antibody- producing cells of the mice, and that are further engineered to be deficient in producing endogenous, murine, antibodies. Such mice are capable of producing human immunoglobulin molecules and antibodies and do not produce or produce substantially reduced amounts of murine immunoglobulin molecules and antibodies. Technologies utilized for achieving this result are disclosed in the patents, applications, and references disclosed in the specification herein. In certain embodiments, the skilled worker may employ methods as disclosed in International Patent Application Publication No. WO 98/24893, which is hereby incorporated by reference for any purpose. See also Mendez et al., 1997, Nature Genetics 15_:146- 156, which is hereby incorporated by reference for any purpose.
- the monoclonal antibodies (mAbs) of the invention can be produced by a variety of techniques, including conventional monoclonal antibody methodology, e.g., the standard somatic cell hybridization technique of Kohler and Milstein (1975,
- An exemplary animal system for preparing hybridomas is the mouse.
- Hybridoma production in the mouse is known in the art and immunization protocols and techniques for isolation of immunized splenocytes for fusion are also known in the art. Fusion partners (e.g., murine myeloma cells) and fusion procedures are also known.
- human monoclonal antibodies directed against B7RP1 can be generated using transgenic mice carrying parts of the human immune system rather than the mouse system.
- mice contain a human immunoglobulin gene minilocus that encodes unrearranged human heavy ( ⁇ and ⁇ ) and K light chain immunoglobulin sequences, together with targeted mutations that inactivate the endogenous ⁇ and K chain loci (Lonberg et al., 1994, Nature 368:856-859). Accordingly, the mice exhibit reduced expression of mouse IgM or K and in response to immunization, the introduced human heavy chain and light chain transgenes undergo class switching and somatic mutation to generate high affinity human IgG K monoclonal antibodies (Lonberg et ah, supra.; Lonberg and Huszar, 1995, Intern. Rev. Immunol.
- HuMab mice The preparation of HuMab mice is described in detail in Taylor et al, 1992, Nucleic Acids Res. 20:6287-6295; Chen et al, 1993, International Immunology 5:647-656; Tuaillon et al, 1994, J. Immunol. 152:2912- 2920; Lonberg et al, 1994, Nature 368:856-859; Lonberg, 1994, Handbook of Exp. Pharmacology 113:49-101; Taylor et al, 1994, International Immunology 6:579-591; Lonberg & Huszar, 1995, Intern. Rev.
- transgenic mice strains described in the Examples below can be used to generate human anti-B7RPl antibodies.
- the present invention provides human monoclonal antibodies that are specific for and neutralize bioactive human B 7RPl polypeptides. Also provided are antibody heavy and light chain amino acid sequences which are highly specific for and neutralize B7RP1 polypeptides when they are bound to them. This high specificity enables the anti-human B7RP1 human antibodies, and human monoclonal antibodies with like specificity, to be effective immunotherapy for B7RP1 associated diseases. In one aspect, the invention provides isolated human antibodies that bind the same or essentially the same epitope as the 16H antibody provided herein.
- the invention provides isolated human antibodies comprising at least one of the amino acid sequences shown in SEQ ID NOS: 1-40 or 44-58 that binds a B7RP1 polypeptide epitope with high affinity and has the capacity to antagonize B7RP1 polypeptide activity.
- These antibodies may bind the same or essentially the same epitope as the anti-B7RPl antibodies shown in the Examples herein.
- the isolated antibodies bind to B7RP1 polypeptide with a dissociation constant (K D ) of about 1O -6 M, 10 "7 M, 10 “8 M 3 10 "9 M, 1O -10 M, 10 ' 11 M or less and inhibits B 7RPl induced survival in an in vitro neutralization assay with an EC 50 of about 10 "6 M, 10" 7 M, 10 "8 M, 10 "9 M or less.
- K D dissociation constant
- anti- human B7RP1 human antibodies that meet the aforementioned binding and neutralization criteria are provided herein.
- anti-human B7RP1 human antibodies of the invention are referred to herein as 16H, 16Hg (germline), 5D, 2H, 2Hg (germline), 15H, 4 IH, and 43H.
- Antibody 16H comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 7 and SEQ ID NO: 1, respectively.
- Antibody 16Hg comprises a variable light chain (V L ) and variable heavy chain (V H ) polypeptide sequences as shown in SEQ ID NO: 1 and SEQ ID NO: 8, respectively.
- Antibody 5D comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 2 and SEQ ID NO: 9, respectively.
- Antibody 2H comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 3 and SEQ ID NO: 10, respectively.
- Antibody 2Hg comprises VL and V H polypeptide sequences as shown in SEQ ID NO: 3 and SEQ ID NO: 11, respectively.
- Antibody 15H comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 4 and SEQ ID NO: 12, respectively.
- Antibody 4 IH comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 5 and SEQ ID NO: 13, respectively.
- Antibody 43H comprises V L and V H polypeptide sequences as shown in SEQ ID NO: 6 and SEQ ID NO: 14, respectively.
- the properties of the anti-human B7RP1 human antibodies of the present invention are specifically disclosed in the Examples.
- K D The dissociation constant (K D ) of an anti-human B7RP1 human antibody can be determined by surface plasmon resonance as generally described in the Examples below.
- surface plasmon resonance analysis measures real-time binding interactions between ligand (recombinant B7RP1 polypeptide immobilized on a biosensor matrix) and analyte (antibodies in solution) by surface plasmon resonance (SPR) using the BIAcore ® system (Pharmacia Biosensor, Piscataway, NJ).
- K D dissociation constant of an anti-human B7RP1 human antibody
- the dissociation constant (K D ) of an anti-human B7RP1 human antibody can also be determined by using KinExA methodology.
- the antibodies bind to B7RP1 with a K 0 of approximately 10 "5 M, 10 "6 M, 10 "7 M, 10 "8 M, lO "9 M, 10 "10 M, 10 "11 M, or 10 "12 M.
- K D as used herein, is intended to refer to the dissociation constant of a particular antibody-antigen interaction. For purposes of the present invention K D was determined as shown in the Examples below.
- the antibodies of the invention are of the IgGl, IgG2, IgG3, or IgG4 isotype.
- the antibodies may be of the IgG2 or IgGl isotype.
- the antibodies of the invention may be of the IgM, IgA, IgE, or IgD isotype.
- the antibodies comprise a human kappa light chain and a human IgGl, IgG2, IgG3, or IgG4 heavy chain. Expression of antibodies of the invention comprising an IgGl or an IgG2 heavy chain constant region is described in the Examples below.
- variable regions of the antibodies are ligated to a constant region other than the constant region for the IgGl, IgG2, IgG3, or IgG4 isotype.
- the antibodies of the invention have been cloned for expression in mammalian cells.
- anti-B7RPl antibodies conservative modifications to the heavy chains and light chains of anti-B7RPl antibodies (and corresponding modifications to the encoding nucleotides) will produce anti-B7RPl antibodies having functional and chemical characteristics similar to those of the anti-B7RPl antibodies disclosed herein.
- substantial modifications in the functional and/or chemical characteristics of anti-B7RPl antibodies may be accomplished by selecting substitutions in the amino acid sequence of the heavy and light chains that differ significantly in their effect on maintaining (a) the structure of the molecular backbone in the area of the substitution, for example, as a sheet or helical conformation, (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain.
- a "conservative amino acid substitution” may involve a substitution of a native amino acid residue with a nonnative residue such that there is little or no effect on the polarity or charge of the amino acid residue at that position.
- any native residue in the polypeptide may also be substituted with alanine, as has been previously described for "alanine scanning mutagenesis.”
- amino acid substitutions can be used to identify those amino acid residues of an anti-B7RPl antibody that are involved in binding specificity and/or affinity of the antibody for B7RP1 (e.g. residues that are involved in binding of the antibody to a particular epitope), such as amino acid residues in CDRl, CDR2, and/or CDR3 regions of the light or heavy chains as described herein. Such amino acid substitutions may increase or decrease the affinity of the anti-B7RPl antibodies described herein.
- variable or “mutant” in reference to an anti-B7RPl human antibody is meant any binding molecule (molecule X) (i) in which the hypervariable regions CDRl, CDR2, and CDR3 of the heavy chain or the hypervariable regions CDRl, CDR2, and CDR3 of the light chain taken as a whole are at least about 80% homologous, at least about 90% homologous, or at least about 95% homologous to the hypervariable regions as shown in SEQ ID NO: 15 through SEQ ID NO.
- variant or mutant is capable of inhibiting the activity of human B7RP1 to the same extent as a reference anti-B7RPl human antibody having framework regions identical to those of molecule X.
- Such antibodies may bind to human B7RP1 or to mouse B7RP1 or both.
- the mouse B7RP1 sequence is described in WO 00/46240, which is incorporated by reference.
- an anti-B7RPl human antibody variant will have light and/or heavy chain CDRs, when taken as a whole, that are at least about 80% amino acid sequence identity, at least about 85% sequence identity, at least about 90% sequence identity, at least about 91% sequence identity, at least about 92% sequence identity, at least about 93% sequence identity, at least about 94% sequence identity, at least about 95% sequence identity, at least about 96% sequence identity, at least about 97% sequence identity, at least about 98% sequence identity, or at least about 99% amino acid sequence identity to the amino acid sequence as shown in SEQ ID NOS: 15 through SEQ ID NO. 26 and/or SEQ ID NOS: 27 through SEQ ID NO. 40, respectively.
- Such antibodies may bind to human B7RP1 or to mouse B7RP1 or to both.
- An anti-B7RPl human antibody variant will have a light chain variable region, when taken as a whole, that has at least about 80% amino acid sequence identity, at least about 81% sequence identity, at least about 82% sequence identity, at least about
- sequence identity 83% sequence identity, at least about 84% sequence identity, at least about 85% sequence identity, at least about 86% sequence identity, at least about 87% sequence identity, at least about 88% sequence identity, at least about 89% sequence identity, at least about 90% sequence identity, at least about 91% sequence identity, at least about
- sequence identity to the amino acid sequence as shown in SEQ ID NOS: 1 through SEQ ID NO.
- a heavy chain variable region when taken as a whole, that has at least about 70% amino acid sequence identity, at least about 75% sequence identity, at least about 80% sequence identity, at least about 81% sequence identity, at least about 82% sequence identity, at least about 83% sequence identity, at least about 84% sequence identity, at least about 85% sequence identity, at least about 86% sequence identity, at least about 87% sequence identity, at least about 88% sequence identity, at least about 89% sequence identity, at least about 90% sequence identity, at least about 91% sequence identity, at least about 92% sequence identity, at least about 93% sequence identity, at least about 94% sequence identity, at least about 95% sequence identity, at least about 96% sequence identity, at least about 97% sequence identity, at least about 98% sequence identity, or at least about 99% amino acid sequence identity to the amino acid sequence as shown in SEQ ID NOS: 7 through SEQ ID NO. 14.
- Such antibodies may bind to human B7RP1 and/or mouse B7RP1.
- CDR- contact residues are amenable to substitution by other amino acids and still allow the antibody to retain substantial affinity for the antigen.
- framework residues not in contact with the CDRs in the heavy and light chains can accommodate substitutions of amino acids from the corresponding positions from other human antibodies, by human consensus amino acids, or from other mouse antibodies, without significant loss of the affinity or non-immunogenicity of the human antibody.
- Selection of various alternative amino acids may be used to produce versions of the disclosed anti-B7RPl antibodies and fragments thereof that have varying combinations of affinity, specificity, non-immunogenicity, ease of manufacture, and other desirable properties.
- a "variant" in reference to a polynucleotide is intended to refer to a nucleic acid molecule having at least about 75% nucleic acid sequence identity with a polynucleotide sequence of the present invention.
- a polynucleotide variant will have at least about 75% nucleic acid sequence identity, at least about 80% nucleic acid sequence identity, at least about 81% nucleic acid sequence identity, at least about 82% nucleic acid sequence identity, at least about 83% nucleic acid sequence identity, at least about 84% nucleic acid sequence identity, at least about 85% nucleic acid sequence identity, at least about 86% nucleic acid sequence identity, at least about 87% nucleic acid sequence identity, at least about 88% nucleic acid sequence identity, at least about 89% nucleic acid sequence identity, at least about 90% nucleic acid sequence identity, at least about 91% nucleic acid sequence identity, at least about 92% nucleic acid sequence identity, at least about 93% nucleic acid sequence identity, at least about
- antibodies of the invention can be expressed in cell lines other than hybridoma cell lines.
- sequences encoding particular antibodies can be used for transformation of a suitable mammalian host cell.
- transformation can be achieved using any known method for introducing polynucleotides into a host cell, including, for example packaging the polynucleotide in a virus (or into a viral vector) and transducing a host cell with the virus (or vector) or by transfection procedures known in the art, as exemplified by U.S. Pat. Nos. 4,399,216, 4,912,040, 4,740,461, and 4,959,455 (all of which are hereby incorporated herein by reference for any purpose).
- the transformation procedure used may depend upon the host to be transformed.
- Methods for introducing heterologous polynucleotides into mammalian cells include, but are not limited to, dextran-mediated transfection, calcium phosphate precipitation, polybrene mediated transfection, protoplast fusion, electroporation, encapsulation of the polynucleotide(s) in liposomes, and direct microinjection of the DNA into nuclei.
- a nucleic acid molecule encoding the amino acid sequence of a heavy chain constant region, a heavy chain variable region, a light chain constant region, or a light chain variable region of an anti-B7RPl antibody of the invention is inserted into an appropriate expression vector using standard ligation techniques.
- the anti-B7RPl antibody heavy chain or light chain constant region is appended to the C-terminus of the appropriate variable region and is ligated into an expression vector.
- the vector is typically selected to be functional in the particular host cell employed (i.e., the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur).
- the vector is typically selected to be functional in the particular host cell employed (i.e., the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur).
- expression vectors used in any of the host cells will contain sequences for plasmid maintenance and for cloning and expression of exogenous nucleotide sequences.
- sequences collectively referred to as “flanking sequences” in certain embodiments will typically include one or more of the following nucleotide sequences: a promoter, one or more enhancer sequences, an origin of replication, a transcriptional termination sequence, a complete intron sequence containing a donor and acceptor splice site, a sequence encoding a leader sequence for polypeptide secretion, a ribosome binding site, a polyadenylation sequence, a polylinker region for inserting the nucleic acid encoding the polypeptide to be expressed, and a selectable marker element.
- a promoter one or more enhancer sequences
- an origin of replication a transcriptional termination sequence
- a complete intron sequence containing a donor and acceptor splice site a sequence encoding a leader sequence for polypeptide secreti
- the vector may contain a "tag"-encoding sequence, i.e., an oligonucleotide molecule located at the 5' or 3' end of the anti-B7RPl antibody polypeptide coding sequence; the oligonucleotide sequence encodes polyHis (such as hexaHis), or another "tag” such as FLAG, HA (hemaglutinin influenza virus), or myc for which commercially available antibodies exist.
- This tag is typically fused to the polypeptide upon expression of the polypeptide, and can serve as a means for affinity purification or detection of the anti-B7RPl antibody from the host cell. Affinity purification can be accomplished, for example, by column chromatography using antibodies against the tag as an affinity matrix.
- the tag can subsequently be removed from the purified anti-B7RPl antibody polypeptide by various means such as using certain peptidases for cleavage.
- Flanking sequences may be homologous ⁇ i.e., from the same species and/or strain as the host cell), heterologous (i.e., from a species other than the host cell species or strain), hybrid (i.e., a combination of flanking sequences from more than one source), synthetic or native.
- the source of a flanking sequence may be any prokaryotic or eukaryotic organism, any vertebrate or invertebrate organism, or any plant, provided that the flanking sequence is functional in, and can be activated by, the host cell machinery.
- Flanking sequences useful in the vectors of this invention may be obtained by any of several methods well known in the art. Typically, flanking sequences useful herein will have been previously identified by mapping and/or by restriction endonuclease digestion and can thus be isolated from the proper tissue source using the appropriate restriction endonucleases. In some cases, the full nucleotide sequence of a flanking sequence may be known. Here, the flanking sequence may be synthesized using the methods described herein for nucleic acid synthesis or cloning.
- flanking sequence may be obtained using polymerase chain reaction (PCR) and/or by screening a genomic library with a suitable probe such as an oligonucleotide and/or flanking sequence fragment from the same or another species.
- PCR polymerase chain reaction
- a fragment of DNA containing a flanking sequence may be isolated from a larger piece of DNA that may contain, for example, a coding sequence or even another gene or genes. Isolation may be accomplished by restriction endonuclease digestion to produce the proper DNA fragment followed by isolation using agarose gel purification, Qiagen ® column chromatography (Chatsworth, CA), or other methods known to the skilled artisan.
- the selection of suitable enzymes to accomplish this purpose will be readily apparent to one of ordinary skill in the art.
- An origin of replication is typically a part of those prokaryotic expression vectors purchased commercially, and the origin aids in the amplification of the vector in a host cell. If the vector of choice does not contain an origin of replication site, one may be chemically synthesized based on a known sequence, and ligated into the vector.
- the origin of replication from the plasmid pBR322 (New England Biolabs, Beverly, MA) is suitable for most gram-negative bacteria, and various viral origins (e.g., SV40, polyoma, adenovirus, vesicular stomatitus virus (VSV), or papillomaviruses such as HPV or BPV) are useful for cloning vectors in mammalian cells.
- viral origins e.g., SV40, polyoma, adenovirus, vesicular stomatitus virus (VSV), or papillomaviruses such as HPV or BPV
- the origin of replication component is not needed for mammalian expression vectors (for example, the SV40 origin is often used only because it also contains the virus early promoter).
- a transcription termination sequence is typically located 3' to the end of a polypeptide coding region and serves to terminate transcription.
- a transcription termination sequence in prokaryotic cells is a G-C rich fragment followed by a poly-T sequence. While the sequence is easily cloned from a library or even purchased commercially as part of a vector, it can also be readily synthesized using methods for nucleic acid synthesis such as those described herein.
- a selectable marker gene encodes a protein necessary for the survival and growth of a host cell grown in a selective culture medium.
- Typical selection marker genes encode proteins that (a) confer resistance to antibiotics or other toxins, e.g., ampicillin, tetracycline, or kanamycin for prokaryotic host cells; (b) complement auxotrophic deficiencies of the cell; or (c) supply critical nutrients not available from complex or defined media.
- Exemplary selectable markers are the kanamycin resistance gene, the ampicillin resistance gene, and the tetracycline resistance gene.
- a neomycin resistance gene may also be used for selection in both prokaryotic and eukaryotic host cells.
- Other selectable genes may be used to amplify the gene that will be expressed.
- Amplification is the process wherein genes that are required for production of a protein critical for growth or cell survival are reiterated in tandem within the chromosomes of successive generations of recombinant cells.
- suitable selectable markers for mammalian cells include dihydrofolate reductase (DHFR) and promoterless thymidine kinase genes.
- DHFR dihydrofolate reductase
- Mammalian cell transformants are placed under selection pressure wherein only the transformants are uniquely adapted to survive by virtue of the selectable gene present in the vector.
- Selection pressure is imposed by culturing the transformed cells under conditions in which the concentration of selection agent in the medium is successively increased, thereby leading to the amplification of both the selectable gene and the DNA that encodes another gene, such as an antibody that binds to B7RP1 polypeptide.
- concentration of selection agent in the medium is successively increased, thereby leading to the amplification of both the selectable gene and the DNA that encodes another gene, such as an antibody that binds to B7RP1 polypeptide.
- increased quantities of a polypeptide such as an anti-B7RPl antibody are synthesized from the amplified DNA.
- a ribosome-binding site is usually necessary for translation initiation of niRNA and is characterized by a Shine-Dalgarno sequence (prokaryotes) or a Kozak sequence (eukaryotes).
- the element is typically located 3' to the promoter and 5' to the coding sequence of the polypeptide to be expressed.
- the final protein product may have, in the -1 position (relative to the first amino acid of the mature protein) one or more additional amino acids incident to expression, which may not have been totally removed.
- the final protein product may have one or two amino acid residues found in the peptidase cleavage site, attached to the amino-terminus.
- Expression and cloning vectors of the invention will typically contain a promoter that is recognized by the host organism and operably linked to the molecule encoding the anti-B7RPl antibody. Promoters are untranscribed sequences located upstream (i.e., 5') to the start codon of a structural gene (generally within about 100 to 1000 bp) that control transcription of the structural gene. Promoters are conventionally grouped into one of two classes: inducible promoters and constitutive promoters.
- Inducible promoters initiate increased levels of transcription from DNA under their control in response to some change in culture conditions, such as the presence or absence of a nutrient or a change in temperature.
- Constitutive promoters uniformly transcribe genes to which they are operably linked, that is, with little or no control over gene expression.
- a large number of promoters, recognized by a variety of potential host cells, are well known.
- a suitable promoter is operably linked to the DNA encoding heavy chain or light chain comprising an anti- B 7RPl antibody of the invention by removing the promoter from the source DNA by restriction enzyme digestion and inserting the desired promoter sequence into the vector.
- Suitable promoters for use with yeast hosts are also well known in the art.
- Yeast enhancers are advantageously used with yeast promoters.
- Suitable promoters for use with mammalian host cells are well known and include, but are not limited to, those obtained from the genomes of viruses such as polyoma virus, fowlpox virus, adenovirus (such as Adenovirus 2), bovine papilloma virus, avian sarcoma virus, cytomegalovirus, retroviruses, hepatitis-B virus and Simian Virus 40 (SV40).
- viruses such as polyoma virus, fowlpox virus, adenovirus (such as Adenovirus 2), bovine papilloma virus, avian sarcoma virus, cytomegalovirus, retroviruses, hepatitis-B virus and Simian Virus 40 (SV40).
- Other suitable mammalian promoters include heterologous mamm
- SV40 early promoter (Bernoist and Chambon, 1981, Nature 290:304-10); CMV promoter (Thomsen et al, 1984, Proc. Natl. Acad. Sci. USA 81:659-663); the promoter contained in the 3' long terminal repeat of Rous sarcoma virus (Yamamoto, et al, 1980, Cell 22:787-97); herpes thymidine kinase promoter (Wagner et al, 1981, Proc. Natl. Acad. Sci. U.S.A.
- promoter and regulatory sequences from the metallothionine gene (Brinster et al., 1982, Nature 296:39-42); and prokaryotic promoters such as the beta-lactamase promoter (Villa-Kamaroff et al, 1978, Proc. Natl. Acad. Sci U.S.A., 75:3727-31); or the tac promoter (DeBoer et al, 1983, Proc. Natl. Acad ScL U.S.A., 80:21-25).
- elastase I gene control region that is active in pancreatic acinar cells (Swift et al, 1984, Cell 38:639-46; Ornitz et al, 1986, Cold Spring Harbor Symp. Quant Biol.
- beta-globin gene control region that is active in myeloid cells (Mogram et al, 1985, Nature 315:338-40; Kollias et al, 1986, Cell 46:89-94); the myelin basic protein gene control region that is active in oligodendrocyte cells in the brain (Readhead et al, 1987, Cell 48:703-12); the myosin light chain-2 gene control region that is active in skeletal muscle (Sani, 1985, Nature 314:283-86); and the gonadotropic releasing hormone gene control region that is active in the hypothalamus (Mason et al, 1986, Science 234:1372-78).
- Enhancers may be inserted into the vector to increase transcription of DNA encoding light chain or heavy chain comprising an anti-B7RPl antibody of the invention by higher eukaryotes.
- Enhancers are c/s-acting elements of DNA, usually about 10-300 bp in length, that act on the promoter to increase transcription. Enhancers are relatively orientation and position independent, having been found at positions both 5' and 3' to the transcription unit.
- enhancer sequences available from mammalian genes are known (e.g., globin, elastase, albumin, alpha- feto-protein and insulin). Typically, however, an enhancer from a virus is used.
- the SV40 enhancer, the cytomegalovirus early promoter enhancer, the polyoma enhancer, and adenovirus enhancers known in the art are exemplary enhancing elements for the activation of eukaryotic promoters. While an enhancer may be positioned in the vector either 5' or 3' to a coding sequence, it is typically located at a site 5' from the promoter.
- Expression vectors of the invention may be constructed from a starting vector such as a commercially available vector. Such vectors may or may not contain all of the desired flanking sequences. Where one or more of the flanking sequences described herein are not already present in the vector, they may be individually obtained and ligated into the vector. Methods used for obtaining each of the flanking sequences are well known to one skilled in the art.
- the completed vector may be inserted into a suitable host cell for amplification and/or polypeptide expression.
- the transformation of an expression vector for an anti-B7RPl antibody into a selected host cell may be accomplished by well known methods including transfection, infection, calcium phosphate co-precipitation, electroporation, microinjection, lipofection, DEAE-dextran mediated transfection, or other known techniques. The method selected will in part be a function of the type of host cell to be used. These methods and other suitable methods are well known to the skilled artisan, and are set forth, for example, in Sambrook et ah, supra.
- a host cell when cultured under appropriate conditions, synthesizes an anti-
- B7RP1 antibody that can subsequently be collected from the culture medium (if the host cell secretes it into the medium) or directly from the host cell producing it (if it is not secreted).
- the selection of an appropriate host cell will depend upon various factors, such as desired expression levels, polypeptide modifications that are desirable or necessary for activity (such as glycosylation or phosphorylation) and ease of folding into a biologically active molecule
- Mammalian cell lines available as hosts for expression are well known in the art and include, but are not limited to, immortalized cell lines available from the American Type Culture Collection (ATCC), including but not limited to Chinese hamster ovary (CHO) cells, HeLa cells, baby hamster kidney (BHK) cells, monkey kidney cells (COS), human hepatocellular carcinoma cells (e.g., Hep G2), and a number of other cell lines.
- ATCC American Type Culture Collection
- cell lines may be selected through determining wnicn ceil lines nave high expression levels and constitutively produce antibodies with B7RP1 binding properties.
- a cell line from the B cell lineage that does not make its own antibody but has a capacity to make and secrete a heterologous antibody can be selected.
- Antibodies of the invention are useful for detecting B7RP1 in biological samples and identification of cells or tissues that produce B7RP1 protein.
- Antibodies of the invention that specifically bind to B7RP1 may be useful in treatment of B7RP1 mediated diseases.
- Said antibodies can be used in binding assays to detect B7RP1 and to inhibit B7RP1 from forming a complex with B7RP1 receptors.
- Said antibodies that bind to B7RP1 and block interaction with other binding compounds may have therapeutic use in modulating B7RP1 mediated diseases.
- antibodies to B7RP1 may block B7RP1 binding to its receptor, which may result in disruption of the B7RP1 induced signal transduction cascade.
- the present invention also relates to the use of one or more of the antibodies of the present invention in the manufacture of a medicament for the treatment of a disorder or condition caused by increased expression of B7RP1 or increased sensitivity to B7RP1 in a patient such as any one of disorders or conditions disclosed herein.
- the invention provides pharmaceutical compositions comprising a therapeutically effective amount of one or a plurality of the antibodies of the invention together with a pharmaceutically acceptable diluent, carrier, solubilizer, emulsifier, preservative and/or adjuvant.
- Acceptable formulation materials are nontoxic to recipients at the dosages and concentrations employed.
- pharmaceutical compositions comprising a therapeutically effective amount of anti-B7RPl antibodies are provided.
- acceptable formulation materials are nontoxic to recipients at the dosages and concentrations employed.
- the pharmaceutical composition may contain formulation materials for modifying, maintaining or preserving, for example, the pH, osmolarity, viscosity, clarity, color, isotonicity, odor, sterility, stability, rate of dissolution or release, adsorption or penetration of the composition.
- formulation materials for modifying, maintaining or preserving for example, the pH, osmolarity, viscosity, clarity, color, isotonicity, odor, sterility, stability, rate of dissolution or release, adsorption or penetration of the composition.
- suitable formulation materials include, but are not limited to, amino acids (such as glycine, glutamine, asparagine, arginine or lysine); antimicrobials; antioxidants (such as ascorbic acid, sodium sulfite or sodium hydrogen-sulf ⁇ te); buffers (such as borate, bicarbonate, Tris-HCl, citrates, phosphates or other organic acids); bulking agents (such as mannitol or glycine); chelating agents (such as ethylenediamine tetraacetic acid (EDTA)); complexing agents (such as caffeine, polyvinylpyrrolidone, beta-cyclodextrin or hydroxypropyl-beta-cyclodextrin); fillers; monosaccharides; disaccharides; and other carbohydrates (such as glucose, mannose or dextrins); proteins (such as serum albumin, gelatin or immunoglobulins); coloring, flavoring and diluting agents; emulsifying amino acids (such
- the optimal pharmaceutical composition will be determined by one skilled in the art depending upon, for example, the intended route of administration, delivery format and desired dosage. See, for example, REMINGTON'S PHARMACEUTICAL SCIENCES, supra. In certain embodiments, such compositions may influence the physical state, stability, rate of in vivo release and rate of in vivo clearance of the antibodies of the invention.
- the primary vehicle or carrier in a pharmaceutical composition may be either aqueous or non-aqueous in nature.
- a suitable vehicle or carrier may be water for injection, physiological saline solution or artificial cerebrospinal fluid, possibly supplemented with other materials common in compositions for parenteral administration.
- Neutral buffered saline or saline mixed wim serum aiourmn are iurcher exemplary vehicles.
- pharmaceutical compositions of the present invention comprise Tris buffer of about pH 7.0-8.5, or acetate buffer of about pH 4.0-5.5, and may further include sorbitol, sucrose, Tween-20 and/or a suitable substitute therefor.
- anti-B7RPl antibody compositions may be prepared for storage by mixing the selected composition having the desired degree of purity with optional formulation agents (REMINGTON'S PHARMACEUTICAL SCIENCES, supra) in the form of a lyophilized cake or an aqueous solution.
- the anti- B 7RPl antibody product may be formulated as a lyophilizate using appropriate excipients such as sucrose.
- compositions of the invention can be selected for parenteral delivery. Alternatively, the compositions may be selected for inhalation or for delivery through the digestive tract, such as orally. Preparation of such pharmaceutically acceptable compositions is within the skill of the art.
- the formulation components are present in concentrations that are acceptable to the site of administration. In certain embodiments, buffers are used to maintain the composition at physiological pH or at a slightly lower pH, typically within a pH range of from about 5 to about 8.
- the therapeutic compositions for use in this invention may be provided in the form of a pyrogen-free, parenterally acceptable aqueous solution comprising the desired anti-B7RPl antibody in a pharmaceutically acceptable vehicle.
- a particularly suitable vehicle for parenteral injection is sterile distilled water in which the anti-B7RPl antibody is formulated as a sterile, isotonic solution, properly preserved.
- the preparation can involve the formulation of the desired molecule with an agent, such as injectable microspheres, bio-erodible particles, polymeric compounds (such as polylactic acid or polyglycolic acid), beads or liposomes, that may provide controlled or sustained release of the product which can be delivered via depot injection.
- hyaluronic acid may also be used, having the effect of promoting sustained duration in the circulation.
- implantable drug delivery devices may be used to introduce the desired antibody molecule.
- rnarmaceuticai compositions of the invention can be formulated for inhalation.
- anti-B7RPl antibodies are advantageously formulated as a dry, inhalable powder.
- anti-B7RPl antibody inhalation solutions may also be formulated with a propellant for aerosol delivery.
- solutions may be nebulized. Pulmonary administration and formulation methods therefore are further described in International Patent Application No. PCT/US94/001875, which is incorporated by reference and describes pulmonary delivery of chemically modified proteins.
- formulations can be administered orally.
- Anti- B7RP1 antibodies that are administered in this fashion can be formulated with or without carriers customarily used in the compounding of solid dosage forms such as tablets and capsules.
- a capsule may be designed to release the active portion of the formulation at the point in the gastrointestinal tract when bioavailability is maximized and pre-systemic degradation is minimized.
- Additional agents can be included to facilitate absorption of the anti-B7RPl antibody. Diluents, flavorings, low melting point waxes, vegetable oils, lubricants, suspending agents, tablet disintegrating agents, and binders may also be employed.
- a pharmaceutical composition of the invention is provided to comprise an effective quantity of one or a plurality of anti-B7RPl antibodies in a mixture with non-toxic excipients that are suitable for the manufacture of tablets.
- excipients include, but are not limited to, inert diluents, such as calcium carbonate, sodium carbonate or bicarbonate, lactose, or calcium phosphate; or binding agents, such as starch, gelatin, or acacia; or lubricating agents such as magnesium stearate, stearic acid, or talc.
- sustained- or controlled-delivery formulations include formulations involving anti-B7RPl antibodies in sustained- or controlled-delivery formulations.
- Techniques for formulating a variety of other sustained- or controlled-delivery means such as liposome carriers, bio-erodible microparticles or porous beads and depot injections, are also known to those skilled in the art. See, for example, International Patent Application No. PCT/US93/00829, which is incorporated by reference and describes controlled release of porous polymeric microparticles for delivery of pharmaceutical compositions.
- Sustained- release preparations may include semipermeable polymer matrices in the form of shaped articles, e.g. films, or microcapsules.
- Sustained release matrices may include polyesters, hydrogels, polylactides (as disclosed in U.S. Patent No. 3,773,919 and European Patent Application Publication No. EP 058481, each of which is incorporated by reference), copolymers of L-glutamic acid and gamma ethyl-L- glutamate (Sidman et al, 1983, Biopolymers 22:547-556), poly (2-hydroxyethyl- methacrylate) (Langer et al, 1981, J. Biomed. Mater. Res. 15:167-277 and Langer, 1982, Chem. Tech.
- Sustained release compositions may also include liposomes that can be prepared by any of several methods known in the art. See e.g., Eppstein et al, 1985, Proc. Natl. Acad. ScL USA 82:3688-3692; European Patent Application Publication Nos. EP 036,676; EP 088,046 and EP 143,949, incorporated by reference.
- compositions used for in vivo administration are typically provided as sterile preparations. Sterilization can be accomplished by filtration through sterile filtration membranes. When the composition is lyophilized, sterilization using this method may be conducted either prior to or following lyophilization and reconstitution.
- Compositions for parenteral administration can be stored in lyophilized form or in a solution. Parenteral compositions generally are placed into a container having a sterile access port, for example, an intravenous solution bag or vial having a stopper pierceable by a hypodermic injection needle.
- the pharmaceutical composition may be stored in sterile vials as a solution, suspension, gel, emulsion, solid, or as a dehydrated or lyophilized powder.
- Such formulations may be stored either in a ready-to-use form or in a form ⁇ e.g., lyophilized) that is reconstituted prior to administration.
- kits for producing a single-dose administration unit may each contain both a first container having a dried protein and a second container having an aqueous formulation.
- kits containing single and multi-chambered pre-filled syringes ⁇ e.g., liquid syringes and lyosyringes) are provided.
- an anti-B7RPl antibody-containing pharmaceutical composition to be employed therapeutically will depend, for example, upon the merapeuiic context ana oojecuves.
- the appropriate dosage levels for treatment will vary depending, in part, upon the molecule delivered, the indication for which the anti-B7RPl antibody is being used, the route of administration, and the size (body weight, body surface or organ size) and/or condition (the age and general health) of the patient.
- the clinician may titer the dosage and modify the route of administration to obtain the optimal therapeutic effect.
- a typical dosage may range from about 0.1 ⁇ g/kg to up to about 30 mg/kg or more, depending on the factors mentioned above.
- the dosage may range from 0.1 ⁇ g/kg up to about 30 mg/kg; from 1 ⁇ g/kg up to about 30 mg/kg; or from 5 ⁇ g/kg up to about 30 mg/kg.
- Dosing frequency will depend upon the pharmacokinetic parameters of the particular anti-B7RPl antibody in the formulation used.
- a clinician administers the composition until a dosage is reached that achieves the desired effect.
- the composition may therefore be administered as a single dose, or as two or more doses (which may or may not contain the same amount of the desired molecule) over time, or as a continuous infusion via an implantation device or catheter. Further refinement of the appropriate dosage is routinely made by those of ordinary skill in the art and is within the ambit of tasks routinely performed by them. Appropriate dosages may be ascertained through use of appropriate dose-response data.
- the antibodies of the invention can be administered to patients throughout an extended time period.
- Chronic administration of an antibody of the invention minimizes the adverse immune or allergic response commonly associated with antibodies that are raised against a human antigen in a non-human animal, for example, a non-fully human antibody produced in a non-human species.
- the route of administration of the pharmaceutical composition is in accord with known methods, e.g. orally, through injection by intravenous, intraperitoneal, intracerebral (intra-parenchymal), intracerebroventricular, intramuscular, intra-ocular, intraarterial, intraportal, or intralesional routes; by sustained release systems or by implantation devices.
- the compositions may be administered by bolus injection or continuously by infusion, or by implantation device.
- the composition also may be administered locally via implantation of a membrane, sponge or another appropriate material onto which the desired molecule nd!> ⁇ cc ⁇ ctuburoeu ⁇ r ciiuctpbuiated.
- the device may be implanted into any suitable tissue or organ, and delivery of the desired molecule may be via diffusion, timed-release bolus, or continuous administration.
- anti-B7RPl antibody pharmaceutical compositions according to the invention ex vivo. In such instances, cells, tissues or organs that have been removed from the patient are exposed to anti-B7RPl antibody pharmaceutical compositions after which the cells, tissues and/or organs . are subsequently implanted back into the patient.
- anti-B7RPl antibodies can be delivered by implanting certain cells that have been genetically engineered, using methods such as those described herein, to express and secrete the polypeptide.
- such cells may be animal or human cells, and may be autologous, heterologous, or xenogeneic.
- the cells may be immortalized.
- the cells in order to decrease the chance of an immunological response, the cells may be encapsulated to avoid infiltration of surrounding tissues.
- the encapsulation materials are typically biocompatible, semi-permeable polymeric enclosures or membranes that allow the release of the protein product(s) but prevent the destruction of the cells by the patient's immune system or by other detrimental factors from the surrounding tissues.
- B7RP ⁇ B7 related protein-1
- hB7RP-l Purified recombinant human B7RP-1 (hB7RP-l) prepared as described in International Patent Application Publication No. WO 00/46240, which is incorporated herein by reference, or CHO cells transfected to express hB7RP-l were used as the antigen.
- Mature human B7RP-1 has the amino acid sequence of residues X to 302 in the sequence shown in WO 00/46240 as SEQ ID NO: 17, wherein X can be 19, 20, 21, 22, 24 or 28.
- Fully human monoclonal antibodies to B7RP-1 were prepared using HCo7 and HCo 12 strains of HuMab transgenic mice, both of which express human antibody genes.
- the endogenous mouse kappa light chain gene has been homozygously disrupted as described in Chen et al. (1993) EMBO J. 12:811-820 and the endogenous mouse heavy chain gene has been homozygously disrupted as described in Example 1 of PCT Publication WO 01/09187.
- Each of these mouse strains carries a human kappa light chain transgene, KCo5, as described in Fishwild et al. (1996) Nature Biotechnology 14:845-851.
- the HCo7 strain carries the HCo7 human heavy chain transgene as described in U.S. Patent Nos. 5,545,806; 5,625,825; and 5,545,807.
- the HCol2 strain carries the HCol2 human heavy chain transgene as described in Example 2 of PCT Publication WO 01/09187.
- HuMab mice of the HCo7 or HCo 12 strain were immunized with purified recombinant B7RP-1 or CHO cells transfected to express B7RP-1.
- General immunization schemes for HuMab mice are described in Lonberg et al (1994) Nature 368(6474): 856-859; Fishwild et al. (1996) Nature Biotechnology 14: 845-851 and PCT Publication WO 98/24884. The mice were 6-16 weeks of age upon the first infusion of antigen.
- a purified recombinant preparation of B7RP-1 antigen (50 ⁇ g) or a preparation of transfected CHO cells (3.5 x 10 6 - 1 x 10 7 cells) was used to immunize the HuMab mice intraperitonealy.
- Transgenic mice were immunized twice with purified antigen in complete
- the plates were washed with PBS/Tween and then incubated with a goat-anti-human IgG Fc polyclonal antibody conjugated with horseradish peroxidase (HRP) for 1 hour at room temperature. After washing, the plates were developed with ABTS substrate (Sigma, A-1888, 0.22 mg/ml) and analyzed by spectrophotometer at OD 415-495. Mice that developed the highest titers of anti-B7RP-l antibodies were used for fusions. Fusions were performed as described below and hybridoma supernatants were tested for anti-B7RP-l activity by ELISA.
- HRP horseradish peroxidase
- mice The mouse splenocytes, isolated from the HuMab mice, were fused with PEG to a mouse myeloma cell line based upon standard protocols. The resulting hybridomas were then screened for the production of antigen-specific antibodies. Single cell suspensions of splenic lymphocytes from immunized mice were fused to one-fourth the number of SP2/0 nonsecreting mouse myeloma cells (ATCC, CRL 1581) with 50% PEG (Sigma).
- Cells were plated at approximately 1x10 5 /well in flat bottom microtiter plate, followed by about two week incubation in selective medium containing 10% fetal bovine serum, 10% P388D1 (ATCC, CRL TIB-63) conditioned medium, 3-5% origen (IGEN) in DMEM (Mediatech, CRL 10013, with high glucose, L-glutamine and sodium pyruvate) plus 5 mM HEPES, 0.055 mM 2-mercaptoethanol, 50 mg/ml gentamycin and Ix HAT (Sigma, CRL P-7185). After 1-2 weeks, cells were cultured in medium in which the HAT was replaced with HT.
- selective medium containing 10% fetal bovine serum, 10% P388D1 (ATCC, CRL TIB-63) conditioned medium, 3-5% origen (IGEN) in DMEM (Mediatech, CRL 10013, with high glucose, L-glutamine and sodium pyruvate) plus 5 mM HEPES, 0.05
- the hybridoma expressing the B7RP1 binding monoclonal antibody 16H was used as a source to isolate total RNA using TRIzol® reagent (Invitrogen).
- a 5' RACE (rapid amplification of cDNA ends) oligonucleotide (5'- CGA CUG GAG CAC GAG GAC ACU GAC AUG GAC UGA AGG AGU AGA AA-3 ' ; SEQ ID NO: 69) was ligated to the RNA using the GeneRacerTM Kit (Invitrogen) components and protocol.
- First strand cDNA was synthesized using a random primer with an extension adapter (5'-_ GGC CGG ATA GGC CTC CAN NNN NNT-3') (SEQ ID NO: 59) and a 5' RACE (rapid amplification of cDNA ends) preparative assay was performed using the GeneRacerTM Kit (Invitrogen) according to instructions from the manufacturer.
- the forward primer was the GeneRacerTM nested primer
- the reverse primer was (5'- GGG GTC AGG CTG GAA CTG AGG-3') (SEQ ID NO: 60).
- the forward primer was the GeneRacerTM nested primer and the reverse primer was (5'- TGA GGA CGC TGA CCA CAC G-3') (SEQ ID NO: 61).
- RACE products were cloned into pCR4-TOPO (Invitrogen) and the sequences determined. Consensus sequences were used to design primers for full-length antibody chain PCR amplification.
- the 5' PCR primer encoded the amino terminus of the signal sequence, an Xbal restriction enzyme site, and an optimized Kozak sequence (5'-CAG CAG AAG CTT CTA GAC CAC CAT GGA CAT GAG GGT CCT CGC TCA GCT CCT GGG-3') (SEQ ID NO: 62).
- the 3' primer encoded the carboxyl terminus and termination codon, as well as a Sail restriction site (5'-CTT GTC GAC TCA ACA CTC TCC CCT GTT GAA GCT C-3') (SEQ ID NO: 63).
- pDSR ⁇ 20 was produced by changing nucleotide 2563 in pDSRal9 from a "Guanosine” to an "Adenosine” by site directed mutagenesis.).
- the 5' PCR primer encoded the amino terminus of the signal sequence, an Xbal restriction enzyme site, and an optimized Kozak sequence (5'-ACA ACA AAG CTT CTA GAC CAC CAT GGA GTT GGG GCT GAA CTG G-3') (SEQ ID NO: 64).
- the 3' primer encoded the carboxyl end of the variable region, including a naturally occurring sense strand BsmBl site (5'- GTG GAG GCA CTA GAG ACG GTG ACC AGG ATT CC - 3'; SEQ ID NO: 65).
- the resulting product was purified, digested with Xbal and BsmBl, gel isolated and ligated into the pDSR ⁇ 20 vector containing the human IgGl constant region and also into the pDSR ⁇ 20 vector containing the human IgG2 constant region. All of the hybridoma derived anti-B7RPl heavy chain variable regions, regardless of the native constant region associated, were cloned as described above into both the pDSR ⁇ 20 vectors containing the human IgGl and the human IgG2 constant regions.
- Stable expression of the 16H anti-B7RPl mAb was achieved by co- transfection of 16H-heavy chain/pDSR ⁇ l9 IgG2 B7RPl-kappa/pDSR ⁇ l9 plasmids into dihydrofolate reductase deficient (DHFR") serum-free adapted Chinese hamster ovary (CHO) cells using a calcium phosphate method (the full length 16H heavy chain sequence is shown in SEQ ID NO: 44; the 16H kappa chain sequence is shown in SEQ ID NO: 45). Transfected cells were selected in medium containing dialyzed serum but not containing hypoxanthine-thymidine to ensure the growth of cells expressing the DHFR enzyme.
- DHFR dihydrofolate reductase deficient
- Transfected clones were screened using assays such as ELISA in order to detect the expression of 16H anti-B7RPl mAb in the conditioned medium.
- the highest expressing clones were subjected to increasing concentrations of methotrexate (MTX) for DHFR amplification.
- MTX amplified clones were screened using assays such as ELISA in order to detect higher expression of 16H anti-B7RPl mAb in the conditioned medium.
- the highest expressing clones were subjected to subcloning to obtain a homogeneous population and creation of cell banks.
- anti-B7RPl antibodies of the invention can be generated in Chinese hamster ovary cells deficient in DHFR using the same protocol as described above for the anti-B7RPl monoclonal antibody.
- the DNA sequences encoding the complete heavy chain or light chain of each anti-B7RPl antibody of the invention are cloned into expression vectors.
- CHOd-cells are co-transfected with an expression vector capable of expressing a complete heavy chain and an expression vector expressing the complete light chain of the appropriate anti-B7RPl antibody.
- cells are co-transfected with a vector capable of expressing a complete heavy chain comprising the amino acid sequence as set forth in SEQ ID NO: 47 and a vector capable of expressing a complete light chain comprising the amino acid sequence set forth in SEQ ID NO: 48.
- Table 2 summarizes exemplary complete light chains and exemplary complete heavy chains for anti- B7RP1 antibodies having human IgG heavy chain constant regions.
- IgGl or IgG2 could be substituted for each other (i.e. where IgGl is listed in the table, IgG2 could be present, and vice versa).
- any other immunoglobulin e.g., IgM, IgA, IgE or IgH) could be used to generate antibodies of the invention.
- Anti-B7RP1 antibody is produced by expression in a clonal line of CHO cells. For each production run, cells from a single vial are thawed into serum-ftee cell culture media. The cells are grown initially in a T-flask followed by spinner flasks and then grown in stainless steel reactors of increasing scale up to a 2000L bioreactor. Production is carried out in a 2000L bioreactor using a fed batch culture, in which a nutrient feed containing concentrated media components is added to maintain cell growth and culture viability. Production lasts for approximately two weeks during which time anti-B7RPl antibody is constitutively produced by the cells and secreted into the cell culture medium.
- the production reactor is controlled at a predetermined pH, temperature, and dissolved oxygen level: pH is controlled by carbon dioxide gas and sodium carbonate addition; dissolved oxygen is controlled by air, nitrogen, and oxygen gas flows.
- pH is controlled by carbon dioxide gas and sodium carbonate addition
- dissolved oxygen is controlled by air, nitrogen, and oxygen gas flows.
- the cell broth is fed into a disk stack centrifuge and the culture supernatant is separated from the cells.
- the concentrate is further clarified through a depth filter followed by a 0.2 ⁇ m filter.
- the clarified conditioned media is then concentrated by tangential flow ultrafiltration.
- the conditioned media is concentrated 15- to 30- fold.
- the resulting concentrated conditioned medium is then either processed through purification or frozen for purification at a later date.
- the germline version of 16H is not likely to be recognized as foreign by the immune response of a dosed patient.
- Plate co-stimulation bioassays were conducted to determine if the germlined antibodies could induce T-cell proliferation with an IC50 similar to the IC 5 0 of the non-germlined antibodies.
- the co-stimulation assays were conducted as described below using anti- CD3 and hB 7RP-I-Fc fusion protein confirmed that this germlined antibody, referred to as l ⁇ Hgermline or 16Hg, retains its biological activities (Figure IB).
- B7RP1-Fc was immobilized at a high density on a CM5 sensor chip using standard amine coupling chemistry.
- a fixed concentration of mAb was then incubated with varying concentrations of B 7RP- 1 or B 7RPl -Fc for at least eight hours at room temperature to allow them to reach equilibrium.
- the samples were then injected over the B7RP1-Fc surface, and the binding signal observed represented free antibody remaining in solution at equilibrium.
- the K D of the interaction between a particular mAb and ligand was calculated from nonlinear regression analysis of the competition curves using a dual-curve one-site homogeneous binding model (Adamczyk et al, 1999, Bioconjugate Ghent. 10:1032-37; Adamczyk et al, 2000, Methods 20:319-28).
- the 16H, 16Hg, and 5D mAbs all bound both soluble B7RP-1 and B7RP-1-Fc proteins at high affinities.
- Binding of 5D, 2H, and 2H germline antibodies was also tested using KinExA (kinetic exclusion assay) technology.
- KinExA kinetic exclusion assay
- hB7RP-l was coupled to agarose beads. The beads were used to create a bead column. Samples containing antibody at a fixed concentration, which were allowed to come to equilibrium with varying concentrations of hB7RP-l, were then passed over the bead column. Antibody not complexed with ligand bound to the coated beads.
- a fluorescent tagged anti-human Fc secondary antibody was used to detect bound test antibody.
- the signal obtained was proportional to free antibody in solution at a given ligand concentration.
- the K D of the interaction was calculated from nonlinear regression analysis of the competition curves using a dual-curve one-site homogeneous binding model (Adamczyk et al, 1999, Bioconjugate Chem. 10:1032-37; Adamczyk et al, 2000, Methods 20:319-28).
- Figures 3, 4, and 5 show the dual-curve fits for antibodies 5D, 2H and 2H(germline). Using this technique, an approximately 10-fold difference was seen in the K D S for antibodies 5D and 2H.
- B7RP-1 antibodies of the invention were evaluated using binding-competition assays, in vitro co-stimulation assays and in vitro tetanus toxoid assays.
- Binding-competition studies were conducted with the 16H mAbs to demonstrate that they can compete for ICOS binding for B7RP-1.
- CHO cells transfected with a gene encoding the full-length human B7RP-1 were first incubated with decreasing amounts of unlabeled 16H mAb and subsequently stained with a fluorescently-labeled ICOS-Fc fusion protein. The cells were then analyzed using flow cytometry.
- ICOS-Fc stained the B7RP-1 -transfected CHO cells; 0.4 ⁇ g/ml of 16H mAb did not affect ICOS-Fc binding.
- 6 and 25 ⁇ g/ml of 16H efficiently competed away ICOS-Fc binding, indicating that the 16H mAb indeed competed for ICOS binding on B7RP- 1.
- Cell culture plates (Falcon, Cat No.353077, U bottom) were coated with 1 ⁇ g/ml anti-human CD3 antibodies (PharMingen Cat No.555336) and lOug/ml anti- human IgG (Fc specific, Sigma Cat No.I3391).
- the anti-CD3 antibodies and anti- human immunoglobulin in phosphate buffered saline (PBS) were added to each well (lOO ⁇ l/well).
- the coated plates were incubated at 4 0 C overnight or at room temperature for 2 hours. The plates were then washed with PBS twice.
- Purified human T cells were added (1x10 5 per well) in 200 ⁇ l volume of media (RPMI 1640 supplemented with 10% fetal calf serum (FCS), penicillin- streptomycin-L-glutamine (PSG), ⁇ -mercpatoethanol (2-ME), N-Acetyl aspartate (NAA) and Napyruvate) and incubated at 37 0 C, 5% CO 2 for 48 hours.
- FCS fetal calf serum
- PSG penicillin- streptomycin-L-glutamine
- 2-ME ⁇ -mercpatoethanol
- NAA N-Acetyl aspartate
- Napyruvate Napyruvate
- hB7RPl transfected CHO cells (5000RAD irradiated) were added at 2x10 4 per well followed by purified human T cells at 1x10 5 per well in 200 ⁇ l volume. Plates were incubated at 37 0 C, 5% CO 2 for 48 hours as above. 3 ⁇ thymidine was added at l ⁇ Ci/well. Cells were incubated overnight, harvested, and counted as above.
- PBMC peripheral blood mononuclear cell layer
- PBS 3x the volume of the mononuclear cell layer
- the PBMC were resuspended in media (RPMI 1640 + 10% heat-inactivated FBS + IX PSG + IX NEAA + 55 ⁇ M 2-ME) and the cells were counted. PMBC were added to wells of a 96-well round bottom plate at 100 ⁇ l
- PBMC/well (3xlO 6 /ml). Tetanus toxoid (20 ⁇ g/ml; University of Massachusetts) was added for a final concentration of 5 ⁇ g/ml. The cells were incubated for 3 days at 37 0 C; 100 ⁇ l supernatant were collected and incubated for an addition 6 to 8 hours in the presence of 1 ⁇ Ci/well 3 H-thymidine (MP Biomedicals). The cells were then harvested and counted.
- Table 4 summarizes the functional characteristics of certain antibodies of the invention as determined using the assays described above.
- SEQ ID NO: 68 (IgC-like): LGFQEVLSVEVTLHVAANFSVPVVSAPHSPSQDELTFTCTSINGYPRPNVYWINKTDNSLLDQALQNDT VFLNMRGLYDVVSVLRIARTPSVNIGCCIENVLLQQNLTVGSQTGNDIGERDKITENP
- Fusion proteins were individually transiently transfected into 293T cells and the conditioned media from these cell lines were used as the source of fusion protein.
- the avidin-tag was used to capture the B7RP1 fusion proteins from solution using a biotin-coated bead. Fusion proteins were incubated with either fluorescently-labeled 16H or 5D mAbs or a fluorescently-labeled ICOS-Fc fusion protein, and incubated with biotin-coated beads. The beads were recovered and analyzed using flow cytometry on a Becton-Dickinson Bioscience FACScan (BD, Franklin Lakes, NJ).
- the antibodies generated as described above in Example 1 and tested for binding using the avidin fusion binding assay could be divided into two epitope classes, H and D, as shown in Table 5. Of the 100 antibodies initially selected based on their ability to bind B7RP1, 15 failed to bind in the avidin fusion binding assay, most likely because of degradation.
- SNP single nucleotide polymorphism
- the variant was identified within the mature protein coding sequence. A search of the
- NCBI National Center for Biotechnology Information
- B7RP-1 antibodies to inhibit immune response was analyzed using a murinized rat anti-murine B7RP-1 monoclonal antibody (1B7V2) and challenging BALB/c mice with keyhole-limpet hemocyanin (KLH).
- B7V2 murinized rat anti-murine B7RP-1 monoclonal antibody
- KLH keyhole-limpet hemocyanin
- a Chinese-Hamster-Ovary cell line that overexpressed a full-length murine B7RP-1 was injected into rats as a primary immunization, and subsequently with a murine B7RP-1-Fc fusion protein to boost the immune response.
- Spleens were harvested 3 or 4 days post-intravenous boost and the splenic B cells fused with the Y3-Agl.2.3 rat myeloma line (ATCC CRL-1631). Cells were then selected in media supplemented with hypoxanthine-aminopterin-thymidine (HAT) for 2 weeks and subsequently single-cell subcloned by limiting dilution.
- HATCC CRL-1631 hypoxanthine-aminopterin-thymidine
- the chimera was formed by a three step overlapping PCR process.
- the rat variable region was PCR amplified with a 3' primer that contained part, ⁇ 25-35 nucleotides, of the murine constant region.
- the murine constant region was amplified with a 5' primer that contained part, -25-35 nucleotides, of the rat variable region.
- the two fragments were then used as template and the 5' rat variable region (Xbal containing) and the murine 3' constant region (SaK containing) primers were used to generate a complete light chain or heavy chain.
- the light chain and heavy chain PCR products were then digested with Xbal and Sail and cloned into pDSRal9.
- a total of 25 ⁇ g of linearized DNA (12.5 ⁇ g pDC323B LC + 12.5 ⁇ g pDC324 HC) were transfected into CS-9 cells using electroporation and selected on DHFR-supplemented medium.
- KLH Keyhole Limpet Hemocyanin
- Dosing solution #1 KLH 5mg/kg in lmg/mouse ALUM was prepared with equal parts of 2x ALUM (500mg of ALUM plus 50ml PBS (phosphate buffered saline)) and 2x KLH (2.0ml dH20 (RNAse-Free) mixed with 20mg of lyophilized KLH, brought to 20ml with Ix PBS).
- Dosing solution #2 (KLH lmg/kg in lmg/mouse ALUM) was prepared with 1 part 2x KLH mixed with 4 parts Ix phosphate buffered saline.
- mice Female BALB/c mice were primed either with 1 mg/kg of KLH/alum and re- immunized on day 21 with 5mg/kg KLH only, introduced by intraperitoneal injection. Mice were treated by intraperitoneal injection with lB7v.2, the isotype control antibody (anti-AGP3 PB) or the vehicle (PBS) alone, starting on day 1 (one day prior to priming with KLH/alum) in a final volume of 200 ⁇ l every 5 days.
- the isotype control antibody anti-AGP3 PB
- PBS vehicle
- mice were bled every 7 days retro-orbitally (approximately 200 ⁇ l) to obtain approximately 50-100 ⁇ l of serum for analysis of antigen-specific serum IgM
- IL-5 is a cytokine released by T cells in response to antigen stimulation that induces B cell differentiation and function.
- B7RP-1/ICOS interaction is believed to be critical for T-cell-dependent B cell function, measuring serum IL-5 levels was used to determine if interdiction of the B7RP-1/ICOS axis was indeed affecting T cell function.
- blockade of B7RP-1 also inhibited antigen- induced serum IL-5 levels.
- Sera were harvested from the mice from the antigen challenge experiment outlined above 24 hours after the antigen challenge on day 21, and serum IL-5 levels were determined by ELISA. As shown in Figure 11, elevated IL-5 levels were detected in the test mice as early as 9 hours after challenge; levels began to decline by 48 hours and returned to baseline by 72 hours. Treatment of the mice with 1B7V2 mAb lead to a statistically significant repression of IL-5 levels at the 24-hour time point.
- 16H, 16Hg, and 5D were tested in plate co- stimulation assays using cyno T cells, cyno B 7RP-I-Fc, and anti-CD3 mAb. As shown in Figure 12B, all three mAbs inhibited cyno B7RP-1 -dependent cyno T cell activation, indicating that these mAbs functionally block the cyno ICOS-B7RP-1 interaction.
- Example 12 T-CeII Dependent Antigen Responses in the Cynomolgus Monkey Following Administration of the Anti-B7RP-1 Antibodies
- a cynomolgus monkey study was conducted with two anti-B7RP-l monoclonal antibodies, 16H and 5D, to assess the ability of these antibodies to inhibit a T-cell dependent B cell antigen response as determined by serum levels of antigen- specific antibody. Briefly, the anti-keyhole limpet hemocyanin (KLH) and antitetanus toxoid antibody responses were examined following antigen challenge in the presence of B 7RP- 1 antibodies in the cynomolgus monkey.
- KLH anti-keyhole limpet hemocyanin
- antitetanus toxoid antibody responses were examined following antigen challenge in the presence of B 7RP- 1 antibodies in the cynomolgus monkey.
- Test Article 1 was 16H and Test Article 2 was 5D.
- the Control Article was the vehicle for B7RP-1 antibody (0.01 sodium acetate, pH 5.0, 5% sorbitol, 0.004% Tween 20).
- Keyhole Limpet Hemocyanin (KLH) was purchased from Pierce Biotechnology (Rockford, Illinois).
- the KLH was prepared by reconstitution with sterile water to yield a 10 mg/mL stock solution.
- the stock solution was diluted with sterile water to yield a 1 mg/mL dosing solution.
- Tetanus Toxoid used for these experiments was Super-Tet ® Tetanus Toxoid w/Havlogen ® , purchased from IntervetTM Inc. (Milsboro, Delaware).
- the dose level for these experiments was 75 IU (0.5 mL of 150 ILVmL).
- Table 6 shows the treatment group distribution of 28 cynomolgus monkeys.
- Test article doses were administered via intravenous injection to all animals on Days 1, 8, 15, 22, 29, 36, 43, and 50. Animals scheduled for necropsy in Groups 1-4 (1/sex/group) received an additional dose on Day 57. Evaluation of immune response was conducted on all animals via immunization with KLH and tetanus toxoid antigens followed by blood sampling for antigen-specific immunoglobulins (IgM and IgG).
- IgM and IgG antigen-specific immunoglobulins
- Titer values were present following primary administration of both the KLH and tetanus antigens.
- KLH primary titer values ranged from 0 to 900 for both IgM and IgG.
- primary titer values ranged from 0 to 50 for IgM and from 0 to 4050 for IgG. There were no differences in the primary response to tetanus toxoid between the B7RP-1 antibody groups and the control group.
- titer values for IgG were increased following secondary administration of both the KLH and tetanus antigens, when compared to the primary titer values.
- KLH secondary titer values ranged from 0 to 300 for IgM and from 0 to 8100 for IgG.
- B7RP-1 antibodies there was no evidence of inhibition of the KLH secondary response attributed to administration of the B7RP-1 antibodies.
- secondary titer values were below 50 for IgM and ranged from 1350 to 36450 for IgG. Results for individual animal and group mean values are presented in the Figure 13A (16H antibody) and Figure 13B (5D antibody) for Days 53 and 57 following the secondary challenge with tetanus toxoid on Day 42.
- the number of animals reaching peak response was 3/4, 1/4, and 1/4 at the 0.1, 1, and 8 mg/kg dose levels of 16H, respectively, and 1/4, 1/4, and 1/4 at the 0.1, 1, and 8 mg/kg dose levels of 5D respectively, compared to 2/4 control animals.
- the number of animals reaching a high titer on Day 53 was reduced in the B7RP-1 antibody-treated groups.
- titer values were maintained in the control animals, while titer values for several of the B7RP-1 antibody-treated animals declined from the Day 53 values.
- the number of animals with high titers on Day 57 was 0/4, 0/4, and 1/4 at the 0.1, 1, and 8 mg/kg dose levels of 16H, respectively, and 0/4, 0/4, and 0/4 at the 0.1, 1, and 8 mg/kg dose levels of 5D respectively, compared to 2/4 control animals.
- Example 10 demonstrated that both the surrogate therapeutic and the therapeutic candidates blocked T and B cell- dependent immune responses in murine and monkey model systems, which indicated that blocking this co-stimulatory axis may be efficacious in the treatment of B -cell- mediated diseases such as Systemic Lupus Erythematosus (SLE), asthma, and Rheumatoid Arthritis (RA).
- SLE Systemic Lupus Erythematosus
- RA Rheumatoid Arthritis
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Priority Applications (24)
Application Number | Priority Date | Filing Date | Title |
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CA2614972A CA2614972C (fr) | 2005-07-18 | 2006-07-18 | Anticorps neutralisants anti-b7rp1 humains |
ES06787719T ES2572177T3 (es) | 2005-07-18 | 2006-07-18 | Anticuerpos neutralizantes anti-B7RP1 humanos |
NO20080302A NO345593B1 (no) | 2005-07-18 | 2006-07-18 | Humane anti-B7RP1 nøytraliserende antistoffer |
SI200632063A SI1915398T1 (sl) | 2005-07-18 | 2006-07-18 | Humana nevtralizacijska protitelesa proti b7rp1 |
EA200800355A EA021669B1 (ru) | 2005-07-18 | 2006-07-18 | Нейтрализующие антитела человека против b7rp1 |
CN200680034047.3A CN101321783B (zh) | 2005-07-18 | 2006-07-18 | 人抗-b7rp1中和抗体 |
EP06787719.1A EP1915398B1 (fr) | 2005-07-18 | 2006-07-18 | Anticorps neutralisants anti-b7rp1 humains |
MX2008000734A MX2008000734A (es) | 2005-07-18 | 2006-07-18 | Anticuerpos neutralizadores humanos anti-b7rp1. |
RS20160557A RS54984B1 (sr) | 2005-07-18 | 2006-07-18 | Humana anti-b7rp1 neutrališuća antitela |
UAA200801269A UA102667C2 (uk) | 2005-07-18 | 2006-07-18 | Людське нейтралізуюче антитіло проти в7rp1 |
JP2008522896A JP5142998B2 (ja) | 2005-07-18 | 2006-07-18 | ヒト抗b7rp1中和抗体 |
KR1020147020074A KR20140097582A (ko) | 2005-07-18 | 2006-07-18 | 인간 항-b7rp1 중화 항체 |
AU2006270009A AU2006270009A1 (en) | 2005-07-18 | 2006-07-18 | Human anti-B7RP1 neutralizing antibodies |
BRPI0614040A BRPI0614040B8 (pt) | 2005-07-18 | 2006-07-18 | anticorpo isolado que se liga especificamente a b7rp1, polipeptídeo, composição farmacêutica, vetor de expressão, célula hospedeira, linhagem celular isolada e métodos para a detecção de b7rp1 em uma amostra biológica e de produção de um anticorpo ou polipeptídeo |
KR1020137001594A KR20130023356A (ko) | 2005-07-18 | 2006-07-18 | 인간 항-b7rp1 중화 항체 |
DK06787719.1T DK1915398T3 (en) | 2005-07-18 | 2006-07-18 | Humane anti-B7RP1 neutraliserende antistoffer |
IL188642A IL188642A (en) | 2005-07-18 | 2008-01-07 | Human anti-1 rp7b neutralizing antibodies |
HK08111961.4A HK1120049A1 (zh) | 2005-07-18 | 2008-10-30 | 人抗- 中和抗體 |
IL218890A IL218890A0 (en) | 2005-07-18 | 2012-03-27 | Human anti-b7rp1 neutralizing antibodies |
IL218893A IL218893A0 (en) | 2005-07-18 | 2012-03-27 | Human anti-b7rp1 neutralizing antibodies |
IL218892A IL218892A0 (en) | 2005-07-18 | 2012-03-27 | Human anti-b7rp1 neutralizing antibodies |
IL218889A IL218889A0 (en) | 2005-07-18 | 2012-03-27 | Human anti-b7rp1 neutralizing antibodies |
IL218888A IL218888A0 (en) | 2005-07-18 | 2012-03-27 | Human anti-b7rp1 neutralizing antibodies |
HRP20160875TT HRP20160875T1 (hr) | 2005-07-18 | 2016-07-14 | Humana anti-b7rp1 neutralizirajuća antitijela |
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US70026505P | 2005-07-18 | 2005-07-18 | |
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WO2007011941A2 true WO2007011941A2 (fr) | 2007-01-25 |
WO2007011941A3 WO2007011941A3 (fr) | 2007-05-03 |
WO2007011941A9 WO2007011941A9 (fr) | 2008-02-21 |
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US (4) | US7868140B2 (fr) |
EP (7) | EP2388277A3 (fr) |
JP (1) | JP5142998B2 (fr) |
KR (4) | KR101263079B1 (fr) |
CN (1) | CN101321783B (fr) |
AU (1) | AU2006270009A1 (fr) |
BR (1) | BRPI0614040B8 (fr) |
CA (2) | CA2614972C (fr) |
CR (1) | CR9745A (fr) |
DK (1) | DK1915398T3 (fr) |
EA (1) | EA021669B1 (fr) |
ES (1) | ES2572177T3 (fr) |
HK (1) | HK1120049A1 (fr) |
HR (1) | HRP20160875T1 (fr) |
HU (1) | HUE028830T2 (fr) |
IL (6) | IL188642A (fr) |
MX (1) | MX2008000734A (fr) |
NO (1) | NO345593B1 (fr) |
NZ (2) | NZ625807A (fr) |
PL (1) | PL1915398T3 (fr) |
RS (1) | RS54984B1 (fr) |
SG (2) | SG196835A1 (fr) |
SI (1) | SI1915398T1 (fr) |
UA (1) | UA102667C2 (fr) |
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