TW201209402A - Apparatus for loading oligonucleotide spotting devices and spotting oligonucleotide probes - Google Patents
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201209402 六、發明說明: 【發明所屬之技術領域】 本發明關於使用微系統技術(MST)之診斷裝置。特別 是本發明關於用於分子診斷之微流體和生化之處理及分析 【先前技術】201209402 VI. Description of the Invention: TECHNICAL FIELD OF THE INVENTION The present invention relates to a diagnostic apparatus using microsystem technology (MST). In particular, the present invention relates to the treatment and analysis of microfluidics and biochemicals for molecular diagnostics. [Prior Art]
分子診斷已用於:可於病徵顯現之前,提供早期疾病 檢測預示之領域。分子診斷試驗係用於檢測: •遺傳病症 •後天病症 •傳染性疾病 •與健康有關情況之基因易致病因素 由於有高準確度及快速處理時間,分子診斷試驗得以 減少無效健康照護的發生、增進病崽預後(patient outcome)、 改進疾病管理及個體化患者照護。分子診斷的許多技術係 基於自生物樣本(諸如血液或唾液)萃取及擴增之特定核酸( 去氧核糖核酸(DNA)以及核糖核酸(RNA)兩者)的檢測及辨 識。核酸鹼基的互補特性,使經合成之DNA的短序列(寡 核苷酸)得以與特定核酸序列結合(雜交),以供核酸試驗使 用。若雜交發生,則互補序列存在於樣本中。這使得例如 預測個人未來會得到的疾病、判定感染性病原體的種類及 致病性,或判定個人對藥物的反應成爲可能》 201209402 以核酸爲基之分子診斷試驗 以核酸爲基之試驗有四個獨立步驟: 1. 樣本製備 2. 核酸萃取 3. 核酸擴增(任意的) 4- 檢測Molecular diagnostics have been used to provide an early indication of disease detection before the onset of symptoms. Molecular diagnostic tests are used to detect: • genetic disorders • acquired diseases • infectious diseases • genes associated with health-related genetic factors due to high accuracy and rapid processing time, molecular diagnostic tests can reduce the incidence of ineffective health care, Improve patient outcomes, improve disease management, and individualized patient care. Many techniques for molecular diagnostics are based on the detection and identification of specific nucleic acids (both deoxyribonucleic acid (DNA) and ribonucleic acid (RNA)) extracted and amplified from biological samples such as blood or saliva. The complementary nature of the nucleobase allows the short sequence (oligonucleotide) of the synthesized DNA to bind (hybridize) to a particular nucleic acid sequence for use in nucleic acid assays. If hybridization occurs, the complementary sequence is present in the sample. This makes it possible, for example, to predict the disease that an individual will get in the future, to determine the type and pathogenicity of the infectious pathogen, or to determine the individual's response to the drug. 201209402 Nucleic Acid-Based Molecular Diagnostic Tests There are four nucleic acid-based tests. Independent steps: 1. Sample preparation 2. Nucleic acid extraction 3. Nucleic acid amplification (optional) 4- Detection
許多樣本類型,諸如血液、尿液、痰和組織樣本’係 用於基因分析。診斷試驗判定所需的樣本類型’因爲並非 所有樣本皆可代表疾病進程。這些樣本具有各種組分’但 通常只有其中之一受到關注。例如,在血液中,高濃度的 紅血球可抑制致病微生物的檢測。因此,在核酸試驗一開 始時通常需要純化及/或濃縮步驟。Many sample types, such as blood, urine, sputum, and tissue samples, are used for genetic analysis. Diagnostic tests determine the type of sample required' because not all samples represent disease progression. These samples have various components' but usually only one of them is of interest. For example, in the blood, high concentrations of red blood cells can inhibit the detection of pathogenic microorganisms. Therefore, purification and/or concentration steps are typically required at the beginning of the nucleic acid assay.
血液是最常請求的樣本類型之一。其具有三種主要組 分:白血球、紅血球及血小板。血小板加速凝血且在活體 外維持活性》爲了抑制凝血,該試樣在純化與濃縮之前與 諸如伸乙二胺四乙酸(EDTA)的試劑混合。通常自樣本移除 紅血球以濃縮標靶細胞。在人體中,紅血球佔細胞物質之 約99%,但其不帶有DNA因彼不具細胞核。此外,紅血 球含有諸如血紅素之可能干擾下游核酸擴增程序(描述於 下)的成分。藉由溶解溶液差示(differentially)溶解紅血球 可完成紅血球之移除,而留下完整之其餘細胞物質,接著 可利用離心自樣本分離其餘之細胞物質。此提供自其萃取 核酸之濃縮標靶細胞。 用於萃取核酸之確切規程取決於樣本及待實施之診斷 -6- 201209402 分析。例如,用於萃取病毒RNA之規程與用於萃取基因 組DN A之規程相當不同。然而,自標靶細胞萃取核酸通 常包含細胞溶解步驟及接續的核酸純化。細胞溶解步驟使 細胞及細胞核膜破裂,而釋放出遺傳物質》此經常使用溶 胞清潔劑來完成,溶胞清潔劑係諸如十二烷基硫酸鈉,其 亦使存在於細胞中之大量蛋白質變性。Blood is one of the most frequently requested sample types. It has three main components: white blood cells, red blood cells, and platelets. Platelets accelerate coagulation and maintain activity in vitro. In order to inhibit coagulation, the sample is mixed with a reagent such as ethylenediaminetetraacetic acid (EDTA) prior to purification and concentration. Red blood cells are typically removed from the sample to concentrate the target cells. In the human body, red blood cells account for about 99% of cellular material, but they do not carry DNA because they do not have a nucleus. In addition, red blood cells contain components such as heme that may interfere with downstream nucleic acid amplification procedures (described below). Red blood cell removal can be accomplished by dissolving the solution differentially red blood cells, leaving the entire remaining cellular material, which can then be separated from the sample by centrifugation. This provides a concentrated target cell from which the nucleic acid is extracted. The exact procedure used to extract nucleic acids depends on the sample and the diagnosis to be performed -6- 201209402 analysis. For example, the protocol used to extract viral RNA is quite different from the protocol used to extract the genome DN A. However, extracting nucleic acids from a target cell typically involves a cell lysis step and subsequent nucleic acid purification. The cell lysis step ruptures the cell and nuclear membrane, releasing the genetic material. This is often done using a lysing detergent such as sodium lauryl sulfate, which also denatures the large amount of protein present in the cell. .
接著以酒精沉澱步驟純化核酸,此步驟通常使用冰乙 醇或異丙醇,或是經由固相純化步驟純化核酸,該固相純 化步驟通常在管柱中的二氧化矽基材、樹脂或在高濃度的 離液鹽存在下之順磁珠粒上進行,接著清洗核酸,然後以 低離子強度之緩衝液進行洗提。在核酸沉澱之前一個選擇 性步驟是加入蛋白酶,該酶消化蛋白質以進一步純化該樣 本。 其他的溶胞方法包括經由超聲振動之機械式溶胞以及 將樣本加熱至94°C以破壞細胞膜之熱溶胞。 標靶DNA或RNA可以極小量存在於經萃取之物質中 ,尤其是若標靶來自致病性來源。核酸擴增提供選擇性擴 增(即複製)以低濃度存在之特定標靶至可檢測之量的能力 最常使用的核酸擴增技術是聚合酶連鎖反應(PCR)。 PCR在此領域已廣爲所知,且關於此類型反應之完整描述係 提供於 E. van Pelt-Verkuil 等人之 Principles and Technical Aspects of PCR Amplification, Springer,2008。 PCR爲有用之技術,其可在複雜DNA之背景中擴增 201209402 標靶DNA序列。若欲(藉由PCR)擴增RNA,首先必須使 用名爲反轉錄酶之酵素將RNA轉錄爲cDNA(互補DNA)。 隨後,藉由PCR擴增該得到之cDNA。 PCR爲指數型方法,只要維持反應的條件爲可接受的 即可繼續進行。PCR反應之成份爲:The nucleic acid is then purified by an alcohol precipitation step, which is usually carried out using ice ethanol or isopropanol, or via a solid phase purification step, which is usually carried out in a column of cerium oxide substrate, resin or high. The concentration is carried out on paramagnetic beads in the presence of a chaotropic salt, followed by washing of the nucleic acid, followed by elution with a buffer of low ionic strength. A selective step prior to precipitation of the nucleic acid is the addition of a protease which digests the protein to further purify the sample. Other lysis methods include mechanical lysis via ultrasonic vibration and heating of the sample to 94 °C to disrupt thermal lysis of the cell membrane. Target DNA or RNA can be present in the extracted material in very small amounts, especially if the target is from a pathogenic source. Nucleic acid amplification provides the ability to selectively amplify (i.e., replicate) a particular target in a low concentration to a detectable amount. The most commonly used nucleic acid amplification technique is the polymerase chain reaction (PCR). PCR is well known in the art, and a complete description of this type of reaction is provided in E. van Pelt-Verkuil et al. Principles and Technical Aspects of PCR Amplification, Springer, 2008. PCR is a useful technique for amplifying the 201209402 target DNA sequence in the context of complex DNA. If RNA is to be amplified (by PCR), it is first necessary to transcribe RNA into cDNA (complementary DNA) using an enzyme called reverse transcriptase. Subsequently, the obtained cDNA was amplified by PCR. PCR is an exponential method and can be continued as long as the conditions for maintaining the reaction are acceptable. The components of the PCR reaction are:
1. 引子對一具有約1〇至30個與Btt鄰(flanking)標序列之 區互補之核苷酸的短單股DNA1. A short single-stranded DNA having a nucleotide complementary to a region of about 1 to 30 complementary to the Btt-flanking sequence.
2. DNA聚合酶-合成DNA之熱穩定性酶 3. 去氧核糖核苷三磷酸(dNTP)-提供被倂入新合成之DNA 股之核苷酸 4. 緩衝液一提供DNA合成之理想化學環境。2. DNA polymerase-synthesis of DNA thermostable enzymes 3. Deoxyribonucleoside triphosphates (dNTPs) - provide nucleotides that are incorporated into newly synthesized DNA strands. 4. Buffer - an ideal chemistry for DNA synthesis surroundings.
PCR通常涉及將這些反應物置於含有經萃取之核酸的 小管(約10至50微升)。將管放置於循環熱反應器 (thermal cycler)中;此反應器係使反應在一系列不同的溫 度中進行不等時間的儀器。每個熱循環的標準規程涉及變 性相、退火相和延伸相。延伸相有時候被稱爲引子延伸相 。除了這三步驟規程之外,亦可使用二步驟熱規程,其中 退火相和延伸相係經合併。變性相通常涉及提升反應溫度 至90至95°C以使DNA股變性;在退火相中,該溫度被降 至50至60 °C以使引子黏合;然後在延伸相中,該溫度被 提升至最佳DNA聚合酶活性溫度60至72°C以供引子延伸 。此過程被重複循環約20至40次,最終結果爲產生數百 萬套介於引子間之標靶序列拷貝。 已發展出用於分子診斷之許多標準PCR規程之變體, -8 - 201209402 其中包括諸如多引子組PCR,連接子引發(linker-primed )PCR、直接PCR、重複序列(tandem)PCR、即時PCR以及 反轉錄酶PCR。PCR typically involves placing these reactants in a vial containing about the extracted nucleic acid (about 10 to 50 microliters). The tube is placed in a thermal cycler; this reactor is an instrument that allows the reaction to take unequal time at a range of different temperatures. The standard procedures for each thermal cycle involve the variable phase, the annealed phase, and the extended phase. The extension phase is sometimes referred to as the primer extension phase. In addition to these three-step procedures, a two-step thermal protocol can also be used in which the annealing and extension phases are combined. The denatured phase generally involves raising the reaction temperature to 90 to 95 ° C to denature the DNA strand; in the annealed phase, the temperature is lowered to 50 to 60 ° C to bond the primer; then in the extended phase, the temperature is raised to The optimal DNA polymerase activity temperature is 60 to 72 ° C for extension of the primer. This process is repeated about 20 to 40 times, with the end result of generating millions of copies of the target sequence between the primers. Variants of many standard PCR protocols for molecular diagnostics have been developed, -8 - 201209402 which include, for example, multiple primer set PCR, linker-primed PCR, direct PCR, tandem PCR, real-time PCR And reverse transcriptase PCR.
多引子組PCR在單一 PCR混合物中使用多重引子組 ,以產生對不同DNA序列具特異性之不同大小之擴增子 。藉由一次標靶(瞄準)多個基因,可自單一試驗得到額外 的資訊(以其他方式則需要數次試驗)。多引子組PCR之最 佳化則較爲困難,因其需要選取具近似黏合溫度之引子及 具近似長度與鹼基組成之擴增子以確保各擴增子之擴增效 率相等。 連接子引發(linker-primed)PCR,又稱爲接合接合子 (ligation adapt〇〇PCR,係一種不需要標靶-特異性引子, 而能在複雜DNA混合物中使實質上所有DNA序列之核酸 擴增之方法。此方法首先以合適之限制內切酶(酵素)剪切 (digest)標靶DNA群。接著使用接合酶將具有合適懸端之 雙股寡核苷酸連接子(亦稱爲接合子)與標靶DNA片段之末 端接合。接下來使用對連接子序列具有特異性之寡核苷酸 引子進行核酸擴增。藉此,所有與連接子寡核苷酸毗鄰之 DNA來源的片段可被擴增。 直接PCR描述一種直接於樣本上實施PCR而不需要 任何(或最少)核酸萃取之系統。長久以來認爲未經純化之 生物樣本中存在的許多成分諸如血液中的原血紅素成分會 抑制PCR反應。因此在製備PCR反應混合物之前,習慣 上需要加強純化標靶核酸。然而,利用化學性質及樣本濃 -9- 201209402 度之適當變化,有可能僅需最少之DNA純化或以直接 PCR進行PCR。用於直接PCR之PCR化學性質的調整包 括提局緩衝液強度,使用具局活性及處理性(processivity) 之聚合酶及與潛在聚合酶抑制劑螯合之添加物。Multiple primer set PCR uses multiple primer sets in a single PCR mix to generate different sizes of amplicons specific for different DNA sequences. Additional information can be obtained from a single experiment by one target (targeting) multiple genes (in other ways, several trials are required). The optimization of multi-initiator PCR is more difficult because it requires the selection of primers with approximate binding temperatures and amplicon with approximate length and base composition to ensure equal amplification efficiency of each amplicon. Linker-primed PCR, also known as ligation adaptor (PCR), is a non-target-specific primer that can extend the nucleic acid of virtually all DNA sequences in a complex DNA mixture. Addition method. This method first digests the target DNA population with a suitable restriction endonuclease (enzyme). Then, using a ligase, a double-stranded oligonucleotide linker with a suitable overhang (also known as a junction) Binding to the end of the target DNA fragment. Next, nucleic acid amplification is performed using an oligonucleotide primer specific for the linker sequence. Thus, all DNA-derived fragments adjacent to the linker oligonucleotide can be Amplification Direct PCR describes a system that performs PCR directly on a sample without any (or minimal) nucleic acid extraction. Many components present in unpurified biological samples, such as protohemoglobin in blood, have long been considered It will inhibit the PCR reaction. Therefore, it is customary to enhance the purification of the target nucleic acid before preparing the PCR reaction mixture. However, the chemical properties and the appropriate variation of the sample concentration -9-201209402 degrees are utilized. It is possible to perform minimal DNA purification or PCR by direct PCR. The PCR chemistry for direct PCR involves the introduction of buffer strength, the use of reactive and processivity polymerases and potential polymerization. An enzyme inhibitor chelated additive.
重複序列PCR利用兩次獨立的核酸擴增循環以增進擴 增正確擴增子的機率。重複序列PCR之一型爲巢式PCR, 其中兩對PCR引子被用於在不同的核酸擴增循環中擴增單 —基因座。第一對引子與位於標靶核酸序列以外之區域的 核酸序列雜交。第二對引子(巢式引子)係用於第二次擴增 ,該對引子結合於第一 PCR產物之內以產生含有標靶核酸 之第二PCR產物,且第二產物較第一產物爲短。此策略所 運用的論理爲:若第一次核酸擴增期間因失誤而擴增錯誤 之基因座,該錯誤基因座又被第二對引子再次擴增之機率 非常低,因此確保了特異性。Repeated sequence PCR utilizes two separate nucleic acid amplification cycles to increase the probability of amplifying the correct amplicon. One type of repeat PCR is nested PCR in which two pairs of PCR primers are used to amplify a single locus in a different nucleic acid amplification cycle. The first pair of primers hybridize to a nucleic acid sequence located in a region other than the target nucleic acid sequence. A second pair of primers (nested primers) is used for the second amplification, the pair of primers being incorporated within the first PCR product to produce a second PCR product comprising the target nucleic acid, and the second product is short. The rationale used in this strategy is that if the wrong locus is amplified due to a mistake during the first nucleic acid amplification, the probability that the wrong locus is re-amplified by the second pair of primers is very low, thus ensuring specificity.
即時PCR或定量PCR被用於即時測量PCR產物之量 。藉由在反應中使用含有螢光團之探針或螢光染料以及一 組標準物,可測定樣本中之核酸的最初含量。此特別有用 於分子診斷學,其中治療選擇可能取決於樣本中病原體之 含量而有所不同。 反轉錄酶PCR(RT-PCR)係用於自RNA擴增DNA。反 轉錄酶係將 RNA反轉錄成互補DNA(cDNA)之酶’該 cDNA接著藉由PCR擴增。RT-PCR被廣泛地用於表現分 析(expression pro filing)以測定基因之表現或辨識RNA轉 錄物之序列,包括轉錄起始及終止位點。其亦用於擴增 -10- 201209402 RNA病毒,諸如人類免疫不全病毒或C型肝炎病毒。 恆溫擴增係另一種形式之核酸擴增,此種擴增不依賴 擴增反應期間之標靶DNA熱變性,因此不需要精密複雜 的儀器。因此恆溫核酸擴增方法可在田野場所進行或在實 驗室以外之環境簡單地操作。一些恆溫核酸擴增方法已被 描述,包括股取代擴增(Strand Displacement Amplification)、 轉錄媒介性擴增(Transcription Mediated Amplification)、Real-time PCR or quantitative PCR is used to measure the amount of PCR product in real time. The initial amount of nucleic acid in the sample can be determined by using a probe containing a fluorophore or a fluorescent dye and a set of standards in the reaction. This is especially useful for molecular diagnostics where the choice of treatment may vary depending on the amount of pathogen in the sample. Reverse transcriptase PCR (RT-PCR) is used to amplify DNA from RNA. The reverse transcriptase is an enzyme that reverse transcribes RNA into complementary DNA (cDNA). This cDNA is then amplified by PCR. RT-PCR is widely used in expression pro filing to determine the expression of a gene or to identify sequences of an RNA transcript, including transcription initiation and termination sites. It is also used to amplify -10- 201209402 RNA viruses, such as human immunodeficiency virus or hepatitis C virus. The isothermal amplification is another form of nucleic acid amplification that does not rely on the thermal denaturation of the target DNA during the amplification reaction, thus eliminating the need for sophisticated instruments. Therefore, the thermostatic nucleic acid amplification method can be carried out in a field place or simply in an environment other than the laboratory. Some thermostatic nucleic acid amplification methods have been described, including Strand Displacement Amplification, Transcription Mediated Amplification,
核酸序列基底擴增(Nucleic Acid Sequence Based Amplification) 、重組酶聚合酶擴增(Recombinase Polymerase Amplification) 、滾環擴增(Rolling Circle Amplification)、分枝型擴增 (Ramification Amplification)、解螺旋酶依賴性恒溫 DNA 擴增(Helicase-Dependent Isothermal DNA Amplification) 及環形® 溫擴增(Loop-Mediated Isothermal Amplification) 恆溫核酸擴增不依賴持續加熱變性模板DNA以產生 作爲繼續擴增之模板的單股分子,而是利用其他於恆溫下 之方法產生單股分子,諸如藉由特異性限制內核酸酶進行 DNA分子之酶切割,或是利用酶分開DNA雙股。 股取代擴增(SDA)依賴特定限制酶切割半修飾(hemi-m〇dified)DNA之未經修飾股之能力,以及缺乏5’-3’核酸 外切酶活性之聚合酶延伸及取代下游股之能力。然後藉由 偶合正義(sense)與反義(antisense)反應以達成指數性核酸 擴增,其中來自正義反應之股取代係反義反應之模板。此 反應所使用之切口酶不以慣用方式切割DNA,而是在 -11 - 201209402 DNA之一股上產生切口,諸如N. Alwl、Ν· BstNBl及Mlyl 。SDA藉由使用熱穩定性限制酶(Aval)及熱穩定性外聚合 酶(B st聚合酶)之組合加以改進。此組合已經顯示可使反 應之擴增效率自1〇8倍擴增提高至101°倍擴增,因此可能 可以利用此技術來擴增獨特之單拷貝分子。Nucleic Acid Sequence Based Amplification, Recombinase Polymerase Amplification, Rolling Circle Amplification, Ramification Amplification, Helicase Activity Dependence Helicase-Dependent Isothermal DNA Amplification and Loop-Mediated Isothermal Amplification Constant-temperature nucleic acid amplification does not rely on continuous heating to denature template DNA to produce a single molecule that acts as a template for continued amplification. It is a method of producing a single-stranded molecule by other methods at a constant temperature, such as enzymatic cleavage of a DNA molecule by specific restriction of an internal nuclease, or separation of a DNA double strand by an enzyme. Strand-substituted amplification (SDA) relies on the ability of specific restriction enzymes to cleave unmodified strands of hemi-m〇dified DNA, and polymerase extensions that lack 5'-3' exonuclease activity and replace downstream stocks Ability. Exponential nucleic acid amplification is then achieved by coupling sense and antisense, wherein the strand from the sense reaction replaces the template for the antisense reaction. The nicking enzyme used in this reaction does not cleave the DNA in a conventional manner, but instead produces an incision in one of the -11 - 201209402 DNA strands, such as N. Alwl, Ν·BstNBl, and Mlyl. SDA is improved by using a combination of a thermostable restriction enzyme (Aval) and a thermostable outer polymerization enzyme (B st polymerase). This combination has been shown to increase the amplification efficiency of the reaction from 1-8 fold amplification to 101 fold amplification, so it is possible to utilize this technique to amplify unique single copy molecules.
轉錄介導擴增(TMA)及以核酸序列爲基擴增(N A SB A) 使用RNA聚合酶複製RNA序列而非對應之基因組DNA。 此技術使用兩種引子及兩或三種酶,即RNA聚合酶、反 轉錄酶及選擇性之RNase Η(若反轉錄酶不具RNase活性) 。其中的一種引子含有RNA聚合酶之啓動子序列。在核 酸擴增的第一步驟中,此引子於限定位點與標靶核糖體 RNA(rRNA)雜交。接著反轉錄酶自啓動子弓|子之3·端開始 延伸以產生該標靶rRNA之DNA拷貝。在所形成之RNA :DNA雙體中的RNA藉由該反轉錄酶之RNase活性(若有 的話)或額外之RNase Η分解。在下一步驟中,第二引子 與DNA拷貝結合。新的DNA股係由反轉錄酶自此引子之 末端合成,產生雙股之DNA分子。RNA聚合酶辨識DNA 模板中之啓動子序列並開始轉錄。各個新合成之RNA擴 增子再進入過程中以作爲新的複製週期之模板。 在重組酶聚合酶擴增(RPA)中,特定DNA片段之恆温 擴增係經由使方向相反(opposing)之寡核苷酸引子與模板 DNA結合,再藉由DNA聚合酶延伸該等引子加以達成。 雙股DNA(dsDNA)模板之變性不需要加熱。取而代之地, RPA採用重組酶-引子複合物來掃描dsDNA以促進在同源 -12- 201209402 位點之股交換。該產生之結構係藉由單股DNA結合蛋白 與該經取代之模板股交互作用加以穩定,從而防止引子經 由分支遷移(branch migration)退出。重組酶解開使股取代 DNA聚合酶(諸如枯草芽孢桿菌p〇i i(Bsu)之大片段)得以 接近之寡核苷酸之3’端,隨之而來的是引子延伸。指數型 核酸擴增則經此過程之重複循環完成。Transcription-mediated amplification (TMA) and nucleic acid sequence-based amplification (N A SB A) RNA polymerase is used to replicate RNA sequences rather than corresponding genomic DNA. This technique uses two primers and two or three enzymes, RNA polymerase, reverse transcriptase, and selective RNase® (if reverse transcriptase does not have RNase activity). One of the primers contains a promoter sequence of RNA polymerase. In the first step of nucleic acid amplification, the primer hybridizes to the target ribosomal RNA (rRNA) at a defined site. The reverse transcriptase then extends from the promoter 3's end to generate a DNA copy of the target rRNA. The RNA in the formed RNA:DNA dimer is decomposed by the RNase activity (if any) of the reverse transcriptase or additional RNase. In the next step, the second primer binds to the DNA copy. The new DNA strand is synthesized by reverse transcriptase from the end of this primer to produce a double-stranded DNA molecule. RNA polymerase recognizes the promoter sequence in the DNA template and initiates transcription. Each newly synthesized RNA expander is re-entered as a template for a new replication cycle. In recombinase polymerase amplification (RPA), isothermal amplification of a specific DNA fragment is achieved by binding an oppositely directed oligonucleotide primer to the template DNA and then extending the primers by a DNA polymerase. . Denaturation of the double-stranded DNA (dsDNA) template does not require heating. Instead, RPA uses a recombinase-primer complex to scan dsDNA to facilitate stock exchange at the homologous -12-201209402 locus. The resulting structure is stabilized by the interaction of a single strand of DNA binding protein with the substituted template strand, thereby preventing the primer from exiting via branch migration. Recombinase unwinding allows the strand-substituted DNA polymerase (such as a large fragment of B. subtilis p〇i i (Bsu)) to be accessible to the 3' end of the oligonucleotide, followed by primer extension. Exponential nucleic acid amplification is accomplished by repeated cycles of this process.
解螺旋酶依賴性擴增(HDA)模擬活體內系統,其中使 用DNA解螺旋酶以產生供引子雜交之單股模板,接著由 DNA聚合酶延伸引子。在HD A反應之第一步驟中,解螺 旋酶沿著標靶DNA穿過以打斷連接兩股間之氫鍵,該兩 股接著與單股結合蛋白結合。藉由解螺旋酶使單股標靶區 暴露後引子得以黏合。然後DNA聚合酶利用游離之去氧 核糖核苷三磷酸(dNTP)延伸各引子之3·端以製造二條DNA 複製股。該兩條dsDNA複製股各自進入下一個HDA循環 ,導致該標靶序列之指數型核酸擴增。 其他以DNA爲基礎之恆温技術包括滾環擴增(RCA), 其中DNA聚合酶圍繞環形DNA模板持續延伸引子,產生 由該環之許多重複拷貝所組成之長DNA產物。在反應結 束前,該聚合酶產生成千上萬份該環形模板之拷貝,且該 等拷貝之鏈被繫留於該原始標靶DNA上。此方式允許標 靶之空間解離及信號之快速核酸擴增。一小時至多可產生 1〇12份模板拷貝。分枝型擴增係RCA之一種變型,其使 用封閉之環形探針(C-探針)或掛鎖探針及具有高延伸性 (processivity)之DNA聚合酶以在恆温條件下指數型擴增 -13- 201209402 該C-探針。The helicase-dependent amplification (HDA) mimics an in vivo system in which DNA helicase is used to generate a single-strand template for primer hybridization, followed by extension of the primer by DNA polymerase. In the first step of the HD A reaction, the de-enzyme is passed along the target DNA to interrupt the hydrogen bond between the two strands, which in turn binds to the single-stranded binding protein. The primers are bonded by exposing the single-strand target region by helicase. The DNA polymerase then uses the free deoxyribonucleoside triphosphate (dNTP) to extend the 3' end of each primer to create two DNA replication strands. The two dsDNA replication strands each enter the next HDA cycle, resulting in amplification of the exponential nucleic acid of the target sequence. Other DNA-based thermostating techniques include rolling circle amplification (RCA), in which a DNA polymerase extends the primer around a circular DNA template to produce a long DNA product consisting of many repeating copies of the loop. Prior to the end of the reaction, the polymerase produced tens of thousands of copies of the circular template and the copies of the strands were tethered to the original target DNA. This approach allows for spatial dissociation of the target and rapid nucleic acid amplification of the signal. A copy of 1 to 12 templates can be generated in one hour. A variant of the branched-type amplification system RCA that uses a closed circular probe (C-probe) or a padlock probe and a DNA polymerase with high processivity to exponentially expand under constant temperature conditions - 13- 201209402 The C-probe.
環形恆溫擴增(LAMP)提供高選擇性,其採用DNA聚 合酶及一組經特別設計之四個引子,該等引子可辨識標靶 DN A上共6個不同之序列。包含標靶DNA之正義及反義 股序列之內引子啓動LAMP。隨後由外引子啓動之股取代 DNA合成釋放單股DNA。此單股DNA可作爲由第二內引 子及外引子啓動之DNA合成的模板,該第二內引子及外 引子係與標靶之另一端雜交,該DNA合成產生莖環(stem-loop)DNA結構。在後續之LAMP循環中,一個內引子與 產物上之環雜交並啓動取代性DNA合成,產生原始之莖 環DNA及具有兩倍長之莖的新莖環DNA。該循環反應在 一個小時以內持續累積1 〇9份標靶拷貝。最終產物爲具有 數個該標靶之反向重複子及菜花狀結構之莖環DNA,該菜 花狀結構中之多個環係因同一股中交替反向之標靶重複子 互相黏連而形成。Circular thermostat amplification (LAMP) provides high selectivity using DNA polymerase and a set of four specially designed primers that recognize a total of six different sequences on the target DN A. The primers within the sense and antisense strand sequences containing the target DNA initiate LAMP. The strands initiated by the exogenous primers then replace the DNA synthesis to release a single strand of DNA. The single-stranded DNA can serve as a template for DNA synthesis initiated by a second primer and an external primer, and the second primer and the foreign primer are hybridized to the other end of the target, and the DNA is synthesized to produce stem-loop DNA. structure. In the subsequent LAMP cycle, an internal primer hybridizes to the loop on the product and initiates the replacement DNA synthesis, producing the original stem-loop DNA and the new stem-loop DNA with twice as long stems. The cycle reaction continued to accumulate 1 〇 9 copies of the target within one hour. The final product is a stem-loop DNA having a plurality of inverted repeats of the target and a cauliflower-like structure, wherein the plurality of loops in the cauliflower-like structure are formed by adhering mutually overlapping target repeats in the same strand. .
完成核酸擴增後,必須分析該擴增產物以測定是否產 生預期之擴增子(標靶核酸之擴增量)。分析產物之方法可 從簡單地透過凝膠電泳測定該擴增子之大小,到利用DN A 雜交以鑑定該擴增子之核苷酸組成。 凝膠電泳係檢査核酸擴增方法是否產生預期之擴增子 最簡單的方法。凝膠電泳利用施加於凝膠基質之電場以分 離DNA片段。帶負電之DNA片段將以不同速度在基質中 移動,該速度主要取決於片段大小。電泳完成後,將凝膠 中之片段染色以使其可視化。溴化乙錠係常用之染劑,其 -14- 201209402 在紫外光下顯現出螢光。 片段之大小係藉由與DNA尺寸標記(DNA ladder)比較 來測定,該等標記含有已知大小之DNA片段且在凝膠上 與擴增子並排泳行。由於寡核苷酸引子與毗鄰標靶DNA 之特定位點結合,因此擴增產物之大小可被預測及檢測爲 凝膠上已知大小之帶。爲了確定該擴增子之正確性,或者 若產生數個擴增子,則通常採用與擴增子雜交之DNA探After completion of nucleic acid amplification, the amplification product must be analyzed to determine whether or not the expected amplicon (amplification amount of the target nucleic acid) is produced. The method of analyzing the product can be carried out by simply measuring the size of the amplicon by gel electrophoresis to hybridization with DN A to identify the nucleotide composition of the amplicon. Gel electrophoresis is the easiest way to check whether a nucleic acid amplification method produces the desired amplicon. Gel electrophoresis utilizes an electric field applied to a gel matrix to separate DNA fragments. Negatively charged DNA fragments will move in the matrix at different rates, depending on the fragment size. After electrophoresis is completed, the fragments in the gel are stained for visualization. Ethyl bromide is a commonly used dyeing agent, and its -14-201209402 exhibits fluorescence under ultraviolet light. The size of the fragments is determined by comparison with DNA ladders containing DNA fragments of known size and migrating side by side with the amplicons on the gel. Since the oligonucleotide primer binds to a specific site adjacent to the target DNA, the size of the amplification product can be predicted and detected as a band of known size on the gel. In order to determine the correctness of the amplicon, or if several amplicons are generated, DNA hybridization with the amplicon is usually used.
針。 DNA雜交係指藉由互補鹼基配對形成雙股DNA。用 於明確辨識特定擴增產物之DNA雜交需要使用長度約20 個核苷酸之DNA探針。若探針具有與擴增子(標靶)DNA 序列互補之序列,雜交將可在適當溫度、pH値和離子濃 度之條件下發生。若發生雜交,則該受到關注之基因或 DNA序列存在於原始樣本中。 光學檢測係最常用於偵測雜交之方法。擴增子及探針 中之一者係經螢光劑或電化學發光劑之標示以發射光。這 些方法之差異在於使光產生基團產生激發狀態之裝置,但 二者均可用於共價標示核苷酸股。就電化學發光(ECL)而 言,光係由電流刺激發光基團分子或複合物產生。以螢光 而言,其係受到激發光之照射而導致發射光。 螢光係利用發光源及偵測單位加以偵測,該發光源提 供由該螢光分子吸收之波長的激發光。該偵測單位包括一 個偵測發射信號之光感應器(諸如光電倍增管或電荷耦合 裝置(CCD)陣列)及防止激發光被包含在光感應器輸出之裝 -15- 201209402 置(諸如波長選擇過濾器)。該螢光分子發射斯托克斯位移 (Stokes shifted)光以回應激發光,此發射之光則由偵測單 位收集。斯托克斯位移係發射光與被吸收之激發光之間的 頻率差異或波長差異。needle. DNA hybridization refers to the formation of double stranded DNA by complementary base pairing. DNA hybridization of about 20 nucleotides in length is required for DNA hybridization to clearly identify a particular amplification product. If the probe has a sequence complementary to the amplicon (target) DNA sequence, hybridization will occur at the appropriate temperature, pH and ion concentration. If hybridization occurs, the gene or DNA sequence of interest is present in the original sample. Optical detection systems are most commonly used to detect hybridization methods. One of the amplicon and probe is labeled with a fluorescent agent or an electrochemiluminescent agent to emit light. These methods differ in that they cause the photo-generating group to produce an excited state, but both can be used to covalently label nucleotide strands. In the case of electrochemiluminescence (ECL), the light system is generated by current stimulating luminescent group molecules or complexes. In the case of fluorescence, it is irradiated with excitation light to cause light to be emitted. The fluorescent system is detected by a light source and a detection unit that provides excitation light of a wavelength absorbed by the fluorescent molecule. The detection unit includes a light sensor (such as a photomultiplier tube or a charge coupled device (CCD) array) that detects the emitted signal and prevents the excitation light from being included in the output of the light sensor -15-201209402 (such as wavelength selection) filter). The fluorescent molecules emit Stokes shifted light in response to the excitation light, which is collected by the detection unit. The Stokes shift is the difference in frequency or wavelength between the emitted light and the absorbed excitation light.
ECL發射係利用光感應器檢測,該感應器對於所使用 之ECL物種的發射波長具敏感性。例如,過渡金屬-配體 複合物發射可視波長之光,因此習用之光電二極體和CCD 可被用來作爲光感應器。ECL的一項優點在於,若遮蔽環 境光線,ECL之發射光即爲檢測系統中之唯一光線,因此 增進敏感性。The ECL emission system is detected using a light sensor that is sensitive to the emission wavelength of the ECL species used. For example, transition metal-ligand complexes emit light of a visible wavelength, so conventional photodiodes and CCDs can be used as light sensors. An advantage of ECL is that if the ambient light is shielded, the ECL emits light that is the only light in the detection system, thus increasing sensitivity.
微陣列能讓數以百千計之DN A雜交試驗得以同時進 行。微陣列係強大之分子診斷工具,其可在單一試驗中篩 選數千種基因疾病或檢測眾多感染性病原體之存在。微陣 列係由許多不同的DNA探針所組成,該等探針經固定爲 受質上之點。首先將標靶DN A(擴增子)以螢光或發光分子 標示(不論在核酸擴增期間亦或在核酸擴增之後),接著施 用標靶DNA至探針微陣列。該微陣列係於溫度控制、潮 濕環境中培養數小時或數天以使探針及擴增子之間發生雜 交。在培養後,微陣列必須經一系列緩衝液清洗以移除未 結合之股。待清洗後即用氣流(通常爲氮氣)乾燥微陣列表 面。雜交及清洗之嚴謹度至關重要。嚴謹度不足可能導致 高度非特異性結合。嚴謹度過高可能導致無法適當結合, 造成敏感性降低。雜交係藉由檢測與互補探針形成雜交物 之標示擴增子所發射之光加以識別。 -16- 201209402 來自微陣列之螢光係利用微陣列掃描器檢測,掃描器 通常是由電腦控制之倒立掃描式螢光共軛焦顯微鏡’該顯 微鏡通常使用雷射激發螢光染劑及光感應器(諸如光電倍 增管或C C D)檢測該發射信號。螢光分子發射斯托克斯位 移光(如上所述),該光係由檢測單元收集°Microarrays allow hundreds of thousands of DN A hybridization experiments to be performed simultaneously. Microarrays are powerful molecular diagnostic tools that screen thousands of genetic diseases or detect the presence of numerous infectious pathogens in a single experiment. The microarray consists of a number of different DNA probes that are fixed at the point of acceptance. The target DN A (amplicon) is first labeled with fluorescent or luminescent molecules (either during nucleic acid amplification or after nucleic acid amplification), followed by application of the target DNA to the probe microarray. The microarray is cultured in a temperature controlled, humidified environment for hours or days to cause hybridization between the probe and the amplicon. After incubation, the microarray must be washed through a series of buffers to remove unbound strands. After cleaning, the microarray surface is dried with a gas stream (usually nitrogen). The rigor of hybridization and cleaning is critical. Insufficient stringency may result in highly non-specific binding. Excessive rigor may result in inability to properly combine, resulting in reduced sensitivity. Hybridization is identified by detecting the light emitted by the labeled amplicon of the hybridizing probe with the complementary probe. -16- 201209402 Fluorescence from microarrays is detected by a microarray scanner, which is usually a computer-controlled inverted scanning fluorescent conjugated focal microscope. This microscope usually uses laser-excited fluorescent dye and light sensing. The transmitter (such as a photomultiplier tube or CCD) detects the transmitted signal. Fluorescent molecules emit Stokes bits (as described above), which are collected by the detection unit.
該發射之螢光必須經過收集、與未吸收之激發波長分 開並傳輸至檢測器。在微陣列掃描器中’通常使用裝設在 影像面之共軛焦針孔光圈的共軛焦配置以消除非聚焦(〇1^-of-focus)之資訊。此裝置使得只有聚焦部分之光會被檢測 。來自目標之聚焦面以上及以下的光無法進入檢測器,因 此提高信噪比。該經檢測之螢光光子被檢測器轉換成電能 ,接著再被轉換成數位信號。此數位信號轉譯成數字,該 數字代表來自給定像素之螢光的強度。陣列之每項特徵係 由一或多個該等像素組成。掃描之最終結果係陣列表面之 影像。由於在微陣列上之每種探針之確切序列及位置係已 φ 知的,因此可同時辨識及分析與之雜交之標靶序列。 有關螢光探針之更多資訊請見: http://www.premierbiosoft.com/tech_notes/FRET_probe.html 及 http://www.invitrogen.com/site/us/en/home/References/Molecular-Probes-The-The emitted fluorescent light must be collected, separated from the unabsorbed excitation wavelength and transmitted to the detector. In a microarray scanner, a conjugate focal configuration of a conjugate focal hole aperture mounted on the image side is typically used to eliminate non-focusing information. This device allows only the light of the focused portion to be detected. Light from above and below the focal plane of the target cannot enter the detector, thus increasing the signal to noise ratio. The detected fluorescent photons are converted into electrical energy by a detector and then converted into a digital signal. This digital signal is translated into a number that represents the intensity of the fluorescence from a given pixel. Each feature of the array consists of one or more of these pixels. The final result of the scan is an image of the surface of the array. Since the exact sequence and position of each probe on the microarray is known, the target sequence to which it is hybridized can be simultaneously identified and analyzed. More information on fluorescent probes can be found at: http://www.premierbiosoft.com/tech_notes/FRET_probe.html and http://www.invitrogen.com/site/us/en/home/References/Molecular- Probes-The-
Handbook/Technical-Notes-and-Product-Highlights/Fluorescence-Resonance-Handbook/Technical-Notes-and-Product-Highlights/Fluorescence-Resonance-
Energy-Transfer-FRET.html 定點照護(POINT-OF-CARE)分子診斷 '雖然分子診斷試驗提供許多好處,但是此類檢測在臨 -17- 201209402 床實驗室之成長仍較預期的緩慢,還不是實驗室醫學檢驗 之主流。這主要是因爲相較於不涉及核酸方法之檢測而言 ,核酸檢測導致較高之複雜性及成本。在臨床環境中廣泛 地採用分子診斷檢驗係與儀器設備之發展密切相關,該儀 器設備必須能顯著降低成本、提供自始(樣本處理)至終(產 生結果)快速及自動化之分析,且不須大幅人力干預之運 作。Energy-Transfer-FRET.html POINT-OF-CARE Molecular Diagnostics' Although molecular diagnostic tests offer many benefits, the growth of such tests in the -17-201209402 bed laboratory is still slower than expected, not yet The mainstream of laboratory medical testing. This is primarily due to the higher complexity and cost of nucleic acid detection compared to assays that do not involve nucleic acid methods. The extensive use of molecular diagnostic testing in clinical settings is closely related to the development of instrumentation, which must significantly reduce costs, provide rapid (automatic) analysis from initial (sample processing) to final (resulting), and does not require The operation of substantial human intervention.
定點照護技術可在醫師辦公室、醫院床側或甚至以消 費者爲主之居家環境提供照護,此技術可提供許多優點包 括: •快速獲得結果,以便立即採取治療及改善照護品質 •可自非常少量之樣本檢驗獲得實驗室數値 •減少臨床工作量 •減少實驗室工作量及藉由減少行政工作以增進辦公 室效率Point-of-care technology provides care in the physician's office, on the hospital bed side, or even in a consumer-focused home environment. This technology offers many advantages including: • Quick results for immediate treatment and improved care quality • Very small amount Sample testing to obtain laboratory numbers • Reduce clinical workload • Reduce laboratory workload and reduce office productivity by reducing administrative work
•經由減少住院天數、門診病患可在初診時得到確診 及減少樣本之處理、儲存及運送而改善每位病患成本 •有助於臨床管理決策諸如感染控制及抗生素使用 以實驗室晶片(LOC)爲基之分子診斷 以微流體技術爲基礎之分子診斷系統提供可自動化及 加速分子診斷分析之裝置。較短之檢測時間主要是因爲所 需之樣本體積極少、自動化及在微流體裝置內之低開銷內 置級聯式之診斷方法步驟。以奈升及微升爲規模之體積亦 -18- 201209402• Improve cost per patient by reducing hospital stays, outpatients can be diagnosed at the time of initial diagnosis, and reduce sample handling, storage, and delivery • Help with clinical management decisions such as infection control and antibiotic use in laboratory wafers (LOC) Molecular Diagnostics Molecular diagnostic systems based on microfluidic technology provide devices that automate and accelerate molecular diagnostic analysis. The shorter detection time is primarily due to the fact that the required sample volume is less active, automated, and low-cost built-in cascaded diagnostic method steps within the microfluidic device. The volume of the scale of the nanoliter and microliter is also -18- 201209402
減少試劑消耗及成本。實驗室晶片(LOC)裝置係常見之微 流體裝置形式。LOC裝置具有在MST層內之MST結構以 用於將流體處理整合至單一支持受質(通常爲矽)上。利用 半導體產業之VLSI(超大型積體電路)平版印刷技術製造使 各LOC裝置之單位成本非常低廉。然而,控制流體流經 LOC裝置、添加試劑、控制反應條件等等需要大型之外部 水電工程裝置。連接LOC裝置至這些外部裝置大幅地限 制LOC裝置之分子診斷用途於實驗室環境中。外部儀器 之費用及其操作複雜性排除以LOC爲基之分子診斷作爲 定點照護環境中之選擇。 有鑑於此,需要可供定點照護使用之以LOC裝置爲 基之分子診斷系統。 【發明內容】 本發明之各種態樣現由下列編號段落說明。 GLE00 1 . 1 本發明之此態樣提供一種用於分析樣品 流體之微流體裝置,該微流體裝置包含: 樣品入口,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品;及 CMOS電路,該CMOS電路具有數位記憶體以用於儲 存在該樣品處理及分析期間操作控制該等功能部之資料及 作業資訊。 GLE00 1.2 較佳地,該微流體裝置亦具有多個試劑 -19- 201209402 貯器,該等試劑貯器含有用於處理該樣品之試劑,其中儲 存於該數位記憶體之資料關於該試劑識別。 GLE001.3 較佳地,儲存於該數位記億體之資料係 用於該微流體裝置之獨特識別符。 GLE001.4 較佳地,該樣品係含有基因物質之生物Reduce reagent consumption and cost. Laboratory wafer (LOC) devices are a common form of microfluidic device. The LOC device has an MST structure within the MST layer for integrating fluid processing onto a single supporting substrate (usually helium). The unit cost of each LOC device is very low by manufacturing the VLSI (very large integrated circuit) lithography technology of the semiconductor industry. However, controlling the flow of fluid through the LOC device, adding reagents, controlling reaction conditions, and the like requires a large external hydroelectric engineering device. The connection of the LOC devices to these external devices greatly limits the molecular diagnostic use of the LOC devices in a laboratory environment. The cost of external instruments and their operational complexity precludes LOC-based molecular diagnostics as an option in a point-of-care environment. In view of this, there is a need for a molecular diagnostic system based on a LOC device for use in point-of-care. SUMMARY OF THE INVENTION Various aspects of the invention are now described by the following numbered paragraphs. GLE00 1.1. This aspect of the invention provides a microfluidic device for analyzing a sample fluid, the microfluidic device comprising: a sample inlet for receiving the sample; a microsystem technology (MST) layer, the MST layer A functional portion for processing and analyzing the sample; and a CMOS circuit having digital memory for storing data and operational information for operating and controlling the functional portions during the sample processing and analysis. GLE00 1.2 Preferably, the microfluidic device also has a plurality of reagents -19-201209402 reservoirs containing reagents for processing the sample, wherein the data stored in the digital memory is identified with respect to the reagent. GLE001.3 Preferably, the data stored in the digitizer is used for the unique identifier of the microfluidic device. GLE001.4 Preferably, the sample is a biological material-containing organism
樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記憶體之 作業資訊關於熱循環的時間及長度。A sample, one of the functional portions, is used to amplify a polymerase chain reaction (PCR) portion of the nucleic acid sequence in the sample, and the operational information stored in the digital memory is related to the time and length of the thermal cycle.
GLE001.5 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE001.6 較佳地,該微流體裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部》GLE001.5 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The culture temperature of the mixture during the digestion of the nucleic acid sequence by the restriction enzyme. GLE001.6 Preferably, the microfluidic device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture portion"
GLE001.7 較佳地,該微流體裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 GLE001.8 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE00 1.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體’ 該各種探針-標的雜交體係經組構以對輸入有所反應而發 -20- 201209402 射光子,且該CMOS電路倂有光感應器以感測由該探針_ 標的雜交體所發射之光子。 GLE001.10 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE00 1.il 較佳地,該微流體裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。GLE001.7 Preferably, the microfluidic device also has a probe array for hybridizing with the target nucleic acid sequence in the amplicon from the PCR portion. GLE001.8 is preferably stored in the digital memory. The data includes probe identification data to identify probes at various locations within the array of probes. GLE00 1.9 Preferably, each probe is configured to form a probe-target hybrid with a complementary nucleic acid sequence (included in the amplicon). The various probe-target hybrid systems are configured to In response to the input, a photon is emitted -20-201209402, and the CMOS circuit has a photosensor to sense photons emitted by the probe-target hybrid. GLE001.10 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GLE00 1.il Preferably, the microfluidic device also has an array of hybrid chambers for interposing probes such that the probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences.
GLE001 .12 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE001.13 較佳地,該CMOS電路具有銲墊,且該 CMOS電路係經組構以傳輸雜交資料至外部裝置。 GLE001.14 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記億體。 GLE001.15 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。 GLE001.1 6 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE001.17 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 -21 - 201209402 GLE001.18 較佳地,該微流體裝置亦具有支持基板 及上蓋,其中該CMOS電路係介於該支持基板與該MST 層之間,該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE001.19 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。GLE001.12 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE001.13 Preferably, the CMOS circuit has a pad and the CMOS circuit is configured to transmit hybridization data to an external device. GLE001.14 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital device. GLE001.15 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit. GLE001.1 6 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE001.17 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. -21 - 201209402 GLE001.18 Preferably, the microfluidic device also has a support substrate and an upper cover, wherein the CMOS circuit is interposed between the support substrate and the MST layer, the upper cover covers the MST layer and defines the reagents Reservoir. GLE001.19 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until contact When the sample stream is removed to remove the meniscus, the reagent is combined with the sample.
GLE00 1 .20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環" 該具備整合性數位記憶體之易於使用、可大量生產又 不貴之微流體裝置接受輸入流體並加以處理。該數位記憶 體係用於儲存該裝置及倂有該裝置之模組在作業期間所需 之資料及控制資訊。將數位記憶體整合至該裝置提供易於 製造、可大量生產、容易使用又不貴之低組件數的微流體 系統。GLE00 1 .20 Preferably, the PCR portion is configured to complete the thermal cycling of the sample in 30 seconds. The microfluidic device with integrated, mass-produced, inexpensive, and energy-intensive integrated input memory Fluid and treat it. The digital memory system is used to store data and control information required by the device and modules of the device during operation. Integrating digital memory into the device provides a microfluidic system that is easy to manufacture, mass-produced, easy to use, and inexpensive.
GLE002.1 本發明之此態樣提供一種用於分析樣品 流體之測試模組,該測試模組包含: 谷器’其係用於接受該樣品; 功能部,其係用於處理及分析該樣品;及 數位記憶體,其係用於儲存資料及作業資訊,以在樣 品處理及分析期間操作控制該等功能部。 GLE002.2 較佳地,該測試模組亦具有多個試劑貯 器’該等試劑貯器含有用於處理該樣品之試劑,其中儲存 於該數位記億體之資料關於該試劑識別。 -22- 201209402 GLE002.3 較佳地,儲存於該數位記憶體之資料係 用於該測試模組之獨特識別符。 GLE002.4 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PC R)部,且儲存於該數位記憶體之 作業資訊關於熱循環的時間及長度。GLE002.1 This aspect of the invention provides a test module for analyzing a sample fluid, the test module comprising: a barn for receiving the sample; a functional portion for processing and analyzing the sample And digital memory for storing data and job information to manipulate and control these functions during sample processing and analysis. GLE002.2 Preferably, the test module also has a plurality of reagent reservoirs. The reagent reservoirs contain reagents for processing the sample, wherein the data stored in the digits is identified by the reagents. -22- 201209402 GLE002.3 Preferably, the data stored in the digital memory is used for the unique identifier of the test module. GLE002.4 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PC R) portion for amplifying a nucleic acid sequence in the sample, and is stored in The job information of the digital memory is about the time and length of the thermal cycle.
GLE002.5 較佳地,該等功能部包括位於該PCRGLE002.5 Preferably, the functional units are located in the PCR
部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE002.6 較佳地,該測試模組亦具有CMOS電路 及溫度感測器,其中該CMOS電路倂有數位記憶體且使用 該溫度感測器之輸出以反饋控制該培養部。 GLE002.7 較佳地,該測試模組亦具有探針陣列, 以用於與來自該PCR部之擴增子中的標的核酸序列雜交。 GLE002.8 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE002.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射光子,且該CMOS電路倂有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE002.1 0 較佳地,儲存於該數位記憶體之資料包 -23- 201209402 括自該光感應器輸出所產生之雜交資料。 GLE002.1 1 較佳地,該測試模組亦具有雜交室陣列 ,該雜交室陣列用於包含探針以使各該雜交室內之探針經 組構以與該標的核酸序列之一雜交。 GLE002.1 2 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。The culture portion upstream of the portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain a culture temperature of the mixture of the sample and the restriction enzyme during the restriction enzyme digestion of the nucleic acid sequence. GLE002.6 Preferably, the test module also has a CMOS circuit and a temperature sensor, wherein the CMOS circuit has digital memory and uses the output of the temperature sensor to feedback control the culture. GLE002.7 Preferably, the test module also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion. GLE002.8 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GLE002.9 Preferably, each probe is configured to form a probe-target hybrid with a complementary target nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized Photons are emitted in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE002.1 0 Preferably, the data packet stored in the digital memory -23-201209402 includes the hybrid data generated from the output of the light sensor. GLE002.1 1 Preferably, the test module also has an array of hybridization chambers for interposing probes such that the probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences. GLE002.1 2 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber.
GLE002.1 3 較佳地,該CMOS電路具有資料介面以 供傳輸雜交資料至外部裝置。 ' GLE002.1 4 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該資料介面下載病患資料並儲 存該病患資料於該數位記憶體。 GLE002.1 5 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制電路之活化信號而流至該雜交室。GLE002.1 3 Preferably, the CMOS circuit has a data interface for transmitting hybrid data to an external device. Preferably, the sample is drawn from the patient and the CMOS circuit is configured to download patient data via the data interface and to store the patient data in the digital memory. GLE002.1 5 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the control circuit.
GLE002.1 6 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE002.1 7 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE002.1 8 較佳地,該測試模組亦具有LOC裝置 ,該LOC裝置含有與該容器流體相通之樣品入口、支持 基板、微系統技術(MS T)層、介於該支持基板與該MS T層 -24- 201209402 之間的CMOS電路及上蓋,其中該CMOS電路倂有該數位 記憶體,該MST層倂有該功能部,且該上蓋覆蓋該MS T 層及定義該等試劑貯器。 GLE002.1 9 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。GLE002.1 6 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE002.1 7 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE002.1 8 Preferably, the test module also has a LOC device having a sample inlet, a support substrate, a microsystem technology (MS T) layer in fluid communication with the container, between the support substrate and the MS The CMOS circuit and the upper cover between the T layer-24 and the 201209402, wherein the CMOS circuit has the digital memory, the MST layer has the functional portion, and the upper cover covers the MS T layer and defines the reagent reservoirs. GLE002.1 9 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until The reagent is allowed to bind to the sample while contacting the sample stream to remove the meniscus.
GLE002.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環。 該具備整合性數位記憶體之易於使用、可大量生產又 不貴之LOC裝置接受輸入流體並加以處理。該數位記憶 體係用於儲存該LOC裝置及倂有該LOC裝置之模組在作 業期間所需之資料及控制資訊。儲存於該記億體上之資訊 包括倂有此LOC裝置之模組的特徵。將數位記憶體整合 至該裝置提供易於製造、可大量生產、容易使用又不貴之 低組件數的模組。 GLE003.1 本發明之此態樣提供一種用於分析樣品 流體之晶片上實驗室(LOC)裝置,該LOC裝置包含: 樣品入口,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品;及 CMOS電路,該CMOS電路具有數位記億體以用於儲 存流行病學資料,且經組構以下載由外部來源更新之流行 病學資料。 -25- 201209402 GLE003.2 較佳地,該CMOS電路倂有通用性串列 匯流排(u S B)裝置驅動器以操作控制與該外部來源連接之 USB連接件。 GLE003.3 較佳地,該LOC裝置亦具有多個試劑 貯器,該等試劑貯器含有用於處理該樣品之試劑,其中儲 存於該數位記憶體之資料關於該試劑識別。 GLE003.4 較佳地,儲存於該數位記憶體之資料係GLE002.20 Preferably, the PCR section is configured to complete the thermal cycling of the sample within 30 seconds. The easy-to-use, mass-produced, and inexpensive LOC device with integrated digital memory accepts input fluid and processes it. The digital memory system is used to store data and control information required by the LOC device and modules of the LOC device during operation. The information stored on the Billion includes the features of the module with this LOC device. Integrating digital memory into the device provides a module that is easy to manufacture, mass-produced, easy to use, and inexpensive. GLE003.1 This aspect of the invention provides a on-wafer laboratory (LOC) device for analyzing a sample fluid, the LOC device comprising: a sample inlet for accepting the sample; a microsystem technology (MST) layer, The MST layer has a functional portion for processing and analyzing the sample; and a CMOS circuit having a digital body for storing epidemiological data and configured to download an epidemiological update updated by an external source data. -25- 201209402 GLE003.2 Preferably, the CMOS circuit has a universal serial bus (u S B) device driver for operating to control a USB connection to the external source. GLE003.3 Preferably, the LOC device also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the data stored in the digital memory is identified with respect to the reagent. GLE003.4 Preferably, the data stored in the digital memory
用於該LOC裝置之獨特識別符。 GLE003.5 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部。A unique identifier for the LOC device. GLE003.5 Preferably, the sample is a biological sample containing a genetic material, one of the functional portions being a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample.
GLE003.6 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物的酶 反應溫度。GLE003.6 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The enzymatic reaction temperature of the mixture.
GLE003.7 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE003.8 較佳地,該LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 GLE003.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 -26-GLE003.7 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE003.8 Preferably, the LOC device also has a probe array for hybridizing to the target nucleic acid sequence in the amplicon from the PCR portion. GLE003.9 Preferably, each probe is configured to A probe-target hybrid is formed with a complementary target nucleic acid sequence (included in the amplicon), and the various probe-target hybridization systems are configured to react to the input and -26-
201209402 射,且該CMOS電路倂有光感應器以感測由該探丨 雜交體所發射之光子。 GLE003.1 0 較佳地,該LOC裝置亦具有雜 列,該雜交室陣列用於包含探針以使各該雜交室內 經組構以與該標的核酸序列之一雜交。 GLE003.il 較佳地,該光感應器係配準該雜 光電二極體陣列。 GLE003.12 較佳地,該CMOS電路具有銲墊 與該USB連接件連接及傳輸雜交資料至外部裝置。 GLE003.1 3 較佳地,該樣品係自病患抽取 CMOS電路係經組構以經由該USB連接件下載病患 儲存該病患資料於該數位記憶體。 GLE003.14 較佳地,該PCR部具有主動閥 在熱循環期間將液體保留於該PCR部且允許該液體 自該CMOS電路之活化信號而流至該雜交室》 GLE003.1 5 較佳地,該主動閥係設有彎液面 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構 彎液面以阻止該液體之毛細驅動流,該加熱器係用 該液體以自該彎液面錨定器處釋放該彎液面,以恢 驅動流.。 GLE003.1 6 較佳地,該彎液面錨定器係孔, 器具有環形狀且位於鄰近該孔之邊緣。 GLE003.1 7 較佳地,該LOC裝置亦具有支 及上蓋,其中該CMOS電路係介於該支持基板與丨201209402, and the CMOS circuit has a light sensor to sense photons emitted by the probe hybrid. GLE003.1 0 Preferably, the LOC device also has a hybrid, the hybrid chamber array for containing probes such that each of the hybridization chambers is configured to hybridize to one of the target nucleic acid sequences. GLE003.il Preferably, the light sensor is registered with the hybrid photodiode array. GLE003.12 Preferably, the CMOS circuit has a pad to connect to the USB connector and to transmit hybridization data to an external device. GLE003.1 3 Preferably, the sample is extracted from the patient and the CMOS circuit is configured to download the patient via the USB connector to store the patient data in the digital memory. GLE003.14 Preferably, the PCR portion has an active valve that retains liquid in the PCR portion during thermal cycling and allows the liquid to flow from the activation signal of the CMOS circuit to the hybridization chamber" GLE003.1 5 Preferably, The active valve is provided with a meniscus and a boiling start valve of the heater, the meniscus anchoring device is configured to block the meniscus to prevent the capillary driving flow of the liquid, and the heater uses the liquid to The meniscus is released at the meniscus anchor to recover the flow. GLE003.1 6 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE003.1 7 Preferably, the LOC device also has a support cover, wherein the CMOS circuit is interposed between the support substrate and the 丨
!十-標的 交室陣 之探針 交室之 以用於 ,且該 資料並 以用於 回應來 錨定器 以形成 於煮沸 復毛細 該加熱 持基板 % MST -27- 201209402 層之間,該上蓋覆蓋該MST層且定義該等試劑貯器》 GLE003.1 8 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE003.1 9 較佳地,該PCR部具有不到4秒之熱 循環時間。a ten-target intercommunication probe for the chamber, and the data is used in response to the anchor to form between the boiled squeezing layer of the heated holding substrate % MST -27-201209402, The upper cover covers the MST layer and defines the reagent reservoirs. GLE003.1 8 Preferably, the reagent reservoirs each have a surface tension valve for setting a meniscus anchor, the meniscus anchor is used for A meniscus is formed to retain the reagent therein, and the reagent is allowed to bind to the sample until the meniscus is removed by contacting the sample stream. GLE003.1 9 Preferably, the PCR section has a thermal cycle time of less than 4 seconds.
GLE003.20 較佳地,該PCR部具有介於0.45秒至 1.5秒之熱循環時間。GLE003.20 Preferably, the PCR portion has a thermal cycle time of between 0.45 seconds and 1.5 seconds.
該具備整合性數位記憶體之易於使用、可大量生產又 不貴之LOC裝置接受輸入流體並加以處理。該數位記憶 體係用於儲存該LOC裝置及併有該LOC裝置之模組在作 業期間所需之資料及控制資訊。儲存於該記憶體中之資訊 包括當時可獲得之流行病學更新以及用於分析及診斷目的 之資訊。此資訊提供模組不須外來支援之獨立性。將數位 記憶體整合至該裝置提供易於製造、可大量生產、容易使 用又不貴之低組件數的模組。 GLE004.1 本發明之此態樣提供一種用於分析樣品 流體之晶片上實驗室(LOC)裝置,該LOC裝置包含: 樣品入□,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品:及 CMOS電路,該CMOS電路具有數位記億體以用於儲 存基因資料,且經組構以下載由外部來源更新之基因資料 -28 - 201209402 GLE004.2 較佳地,該CMOS電路倂有通用性串列 匯流排(USB)裝置驅動器以操作控制與該外部來源連接之 USB連接件。 GLE004.3 較佳地,該LOC裝置亦具有多個試劑 貯器,該等試劑貯器含有用於處理該樣品之試劑,其中儲 存於該數位記憶體之資料關於該試劑識別。The easy-to-use, mass-produced, and inexpensive LOC device with integrated digital memory accepts input fluid and processes it. The digital memory system is used to store data and control information required by the LOC device and the module of the LOC device during operation. The information stored in this memory includes epidemiological updates available at the time and information for analytical and diagnostic purposes. This information provides modules that do not require the independence of external support. Integrating digital memory into the device provides a module that is easy to manufacture, mass-produced, and easy to use and inexpensive. GLE004.1 This aspect of the invention provides a on-wafer laboratory (LOC) device for analyzing a sample fluid, the LOC device comprising: a sample inlet for receiving the sample; a microsystem technology (MST) layer The MST layer has a functional portion for processing and analyzing the sample: and a CMOS circuit having a digital body for storing genetic data and configured to download genetic data updated by an external source-28 - 201209402 GLE004.2 Preferably, the CMOS circuit has a universal serial bus (USB) device driver to operatively control a USB connector connected to the external source. GLE004.3 Preferably, the LOC device also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the data stored in the digital memory is identified with respect to the reagent.
GLE004.4 較佳地,儲存於該數位記憶體之資料係 用於該LOC裝置之獨特識別符。 GLE004.5 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之聚合酶連鎖反應(PCR)部。GLE004.4 Preferably, the data stored in the digital memory is used for the unique identifier of the LOC device. GLE004.5 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the genetic material.
GLE004.6 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物的酶 反應溫度。 GLE004.7 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE004.8 較佳地,該LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 GLE004.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, -29- 201209402 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射’且該CMOS電路倂有光感應器以感測由該探針-標的 雜交體所發射之光子。 GLE004.1 0 較佳地,該LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。GLE004.6 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The enzymatic reaction temperature of the mixture. GLE004.7 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE004.8 Preferably, the LOC device also has a probe array for hybridizing to the target nucleic acid sequence in the amplicon from the PCR portion. GLE004.9 Preferably, each probe is configured to Forming a probe-target hybrid with a complementary nucleic acid sequence (included in the amplicon), -29-201209402 The various probe-target hybridization systems are configured to emit in response to an input' and the CMOS The circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE004.1 0 Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that the probes within each hybridization chamber are organized to hybridize to one of the target nucleic acid sequences.
GLE004.il 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE004.1 2 較佳地,該CMOS電路具有銲墊以用於 經由該USB連接件傳輸雜交資料。 GLE004.1 3 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記憶體。GLE004.il Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE004.1 2 Preferably, the CMOS circuit has pads for transmitting hybrid data via the USB connector. GLE004.1 3 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital memory.
GLE004.1 4 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。 GLE004.1 5 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE004.1 6 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE004.1 7 較佳地,該LOC裝置亦具有支持基板 -30- 201209402 及上蓋,其中該CMOS電路係介於該支持基板與該MST 層之間,該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE004.1 8 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE004.19 較佳地,該PCR部具有不到4秒之熱GLE004.1 4 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit. GLE004.1 5 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE004.1 6 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE004.1 7 Preferably, the LOC device also has a support substrate -30-201209402 and an upper cover, wherein the CMOS circuit is interposed between the support substrate and the MST layer, the upper cover covers the MST layer and defines the reagents Reservoir. GLE004.1 8 Preferably, the reagent reservoirs each have a surface tension valve disposed with a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until The reagent is allowed to bind to the sample while contacting the sample stream to remove the meniscus. GLE004.19 Preferably, the PCR portion has a heat of less than 4 seconds.
GLE004.20 較佳地,該PCR部具有介於0.45秒至 1 . 5秒之熱循環時間。 該具備整合性數位記憶體之易於使用、可大量生產又 不貴之LOC裝置接受輸入流體並加以處理。該數位記憶 體係用於儲存該LOC裝置及倂有該LOC裝置之模組在作 業期間所需之資料及控制資訊。儲存於該記憶體中之資訊 包括當時可獲得之基因資訊更新以及用於分析及診斷目的 φ 之資訊。此資訊提供模組不須外來支援之獨立性。將數位 記憶體整合至該裝置提供易於製造、可大量生產、容易使 用又不貴之低組件數的模組。 GLE005.1 本發明之此態樣提供一種用於分析樣品 流體之晶片上實驗室(LOC)裝置’該LOC裝置包含: 樣品入口,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品:及 CMOS電路,該CMOS電路具有數位記憶體以用於儲 -31 - 201209402 存在該樣品處理及分析期間操作控制該等功能部之 作業資訊;其中 該資料係經加密以用於與外部裝置安全溝通。 GLE005.2 較佳地,該LOC裝置亦具有多 貯器’該等試劑貯器含有用於處理該樣品之試劑, 存於該數位記憶體之資料關於該試劑識別。 .、 GLE005.3 較佳地,儲存於該數位記憶體之 r 用於該LOC裝置之獨特識別符。 GLE005.4 較佳地,該樣品係含有基因物質 樣品,該等功能部中之一者係用於擴增該樣品中之 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記 作業資訊關於熱循環的時間及長度。 GLE005.5 較佳地,該等功能部包括位於f 部上游之培養部且該等試劑貯器中之一者係限制酶 該培養部具有加熱器以維持該樣品與限制酶之混合 限制酶消化該核酸序列期間的培養溫度。 GLE005.6 較佳地,該LOC裝置亦具有溫 器,其中該CMOS電路使用該溫度感測器之輸出以 制該培養部。 GLE005.7 較佳地,該LOC裝置亦具有探 ,以用於與來自該PCR部之擴增子中的標的核酸序 〇 GLE005.8 較佳地,儲存於該數位記憶體中 包括探針識別資料,以識別在該探針陣列內各個位 資料及 個試劑 其中儲 資料係 之生物 核酸序 憶體之 ^ PCR 貯器, 物在該 度感測 反饋控 針陣列 列雜交 之資料 置之探GLE004.20 Preferably, the PCR portion has a thermal cycle time of between 0.45 seconds and 1.5 seconds. The easy-to-use, mass-produced, and inexpensive LOC device with integrated digital memory accepts input fluid and processes it. The digital memory system is used to store data and control information required by the LOC device and modules of the LOC device during operation. The information stored in this memory includes information on genetic information updates available at the time and information for analysis and diagnostic purposes. This information provides modules that do not require the independence of external support. Integrating digital memory into the device provides a module that is easy to manufacture, mass-produced, and easy to use and inexpensive. GLE005.1 This aspect of the invention provides a wafer-on-lab (LOC) device for analyzing a sample fluid. The LOC device comprises: a sample inlet for accepting the sample; a microsystem technology (MST) layer, The MST layer has a functional portion for processing and analyzing the sample: and a CMOS circuit having a digital memory for storing -31 - 201209402 operation information for controlling the operation of the functional portion during the sample processing and analysis The data is encrypted for secure communication with external devices. GLE 005.2 Preferably, the LOC device also has a multi-reservoir. The reagent reservoirs contain reagents for processing the sample, and the data stored in the digital memory is identified with respect to the reagent. GLE005.3 Preferably, the r stored in the digital memory is used for the unique identifier of the LOC device. GLE005.4 Preferably, the sample contains a sample of a genetic material, and one of the functional portions is used to amplify a polymerase chain reaction (PCR) portion of the sample, and is stored in the digital record Information about the time and length of the thermal cycle. GLE005.5 Preferably, the functional portions include a culture portion located upstream of the f portion and one of the reagent reservoirs is a restriction enzyme. The culture portion has a heater to maintain mixing of the sample and the restriction enzyme to limit enzyme digestion. The culture temperature during the nucleic acid sequence. GLE005.6 Preferably, the LOC device also has a warmer, wherein the CMOS circuit uses the output of the temperature sensor to make the culture. GLE005.7 Preferably, the LOC device also has probes for use with the target nucleic acid sequence GLE005.8 in the amplicon from the PCR portion. Preferably, the digital memory is stored in the digital memory including probe identification. Data to identify the data of each bit in the probe array and the reagents of the biological nucleic acid sequence of the data storage system, and the data of the hybridization of the sensory feedback needle array
-32- 201209402 針。 GLE005.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射,且該CMOS電路倂有光感應器以感測由該探針-標的 雜交體所發射之光子。-32- 201209402 Needle. GLE005.9 Preferably, each probe is configured to form a probe-target hybrid with a complementary target nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized The light is emitted in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid.
GLE005.10 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE005.1 1 較佳地,該LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE005.12 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE005.1 3 較佳地,該CMOS電路具有銲墊,且該 CMOS電路係經組構以傳輸雜交資料至外部裝置。 GLE005.14 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記憶體。 GLE005.1 5 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。 GLE005.1 6 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 -33- 201209402 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE005.1 7 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE005.1 8 較佳地,該LOC裝置亦具有支持基板 及上蓋,其中該CMOS電路係介於該支持基板與該MST 層之間,該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE005.1 9 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE005.20 較佳地,該P C R部係經組構以在3 0秒 內完成該樣品之熱循環。 該具備整合性數位記憶體之易於使用、可'大量生產又 不貴之LOC裝置接受診斷樣品並加以處理。該數位記億 體係用於儲存該LOC裝置及倂有該LOC裝置之診斷模組 在作業期間所需之資料及控制資訊。該記憶體亦保全儲存 病患測試結果資訊。該儲存病患測試結果資訊之能力使該 診斷模組有可能僅利用最小外部電源供應進行測試,之後 再配合具備完整功能之閱讀器分析該病患測試結果。該病 患測試結果資訊之保全儲存將確保該資訊不會經由非法管 道被非法使用。將數位記憶體整合至該裝置提供易於製造 、可大量生產、容易使用又不貴之低組件數的模組。 GLE006.1 本發明之此態樣提供一種用於分析樣品 201209402 流體之測試模組,該測試模組包含: 容器,其係用於接受該樣品; 功能部,其係用於處理及分析該樣品; 支持基板:及 在該支持基板上之CMOS電路,其係用於在該樣品之 處理及分析期間操作控制該功能部。GLE005.10 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GLE005.1 1 Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences. GLE005.12 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE005.1 3 Preferably, the CMOS circuit has a pad and the CMOS circuit is configured to transmit hybridization data to an external device. GLE005.14 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital memory. GLE005.1 5 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit. GLE005.1 6 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid Drive flow, the heater is used to boil -33 - 201209402 The liquid releases the meniscus from the meniscus anchor to recover the capillary drive flow. GLE005.1 7 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE005.1 8 Preferably, the LOC device also has a support substrate and an upper cover, wherein the CMOS circuit is interposed between the support substrate and the MST layer, the upper cover covers the MST layer and defines the reagent reservoirs. GLE005.1 9 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until The reagent is allowed to bind to the sample while contacting the sample stream to remove the meniscus. GLE005.20 Preferably, the P R R portion is organized to complete the thermal cycling of the sample in 30 seconds. The easy-to-use, mass-produced and inexpensive LOC device with integrated digital memory accepts diagnostic samples and processes them. The digital system is used to store the data and control information required by the LOC device and the diagnostic module of the LOC device during operation. The memory also preserves information on patient test results. The ability to store patient test results allows the diagnostic module to be tested with only a minimal external power supply, and then analyze the patient test results with a fully functional reader. The preservation of the information on the results of the test will ensure that the information is not illegally used through illegal channels. Integrating digital memory into the device provides a module that is easy to manufacture, mass-produced, easy to use, and inexpensive. GLE006.1 This aspect of the invention provides a test module for analyzing a sample 201209402 fluid, the test module comprising: a container for receiving the sample; a functional portion for processing and analyzing the sample A support substrate: and a CMOS circuit on the support substrate for operating and controlling the functional portion during processing and analysis of the sample.
GLE006.2 較佳地,該測試模組亦具有多個試劑貯 器,該等試劑貯器含有用於處理該樣品之試劑,其中該 CMOS電路具有用於儲存關於該試劑識別資料之數位記憶GLE006.2 Preferably, the test module also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the CMOS circuit has a digital memory for storing identification data of the reagents
GLE006.3 較佳地,儲存於該數位記憶體之資料係 用於測試模組之獨特識別符。 GLE006.4 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記憶體之 φ 作業資訊關於熱循環的時間及長度。GLE006.3 Preferably, the data stored in the digital memory is used to uniquely identify the test module. GLE006.4 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample, and is stored in the sample The φ job information of the digital memory is about the time and length of the thermal cycle.
GLE006.5 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE006.6 較佳地,該測試模組亦具有溫度感測器 ,其中該CMOS電路使用該溫度感測器之輸出以反饋控制 該培養部。 GLE006.7 較佳地,該測試模組亦具有探針陣列 -35- 201209402 以用於與來自該PCR部之擴增子中的標的核酸序列雜交。 GLE006.8 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE006.9 較佳地,每種探針係經組構以與互補性GLE006.5 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The culture temperature of the mixture during the digestion of the nucleic acid sequence by the restriction enzyme. GLE006.6 Preferably, the test module also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE006.7 Preferably, the test module also has a probe array -35-201209402 for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion. GLE006.8 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GLE006.9 Preferably, each probe is organized to complement each other
標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射,且該CMOS電路倂有光感應器以感測由該探針-標的 雜交體所發射之光子。 GLE006.1 0 較佳地,儲存於該數位記億體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE006.1 1 較佳地,該測試模組亦具有雜交室陣列 ,該雜交室陣列用於包含探針以使各該雜交室內之探針經 組構以與該標的核酸序列之一雜交。 GLE006.1 2 較佳地,該光感應器係配準該雜交室之The target nucleic acid sequence (included in the amplicon) forms a probe-target hybrid, the various probe-target hybridization systems are configured to emit in response to the input, and the CMOS circuit has a light sensor Photons emitted by the probe-target hybrid are sensed. GLE006.1 0 Preferably, the data stored in the digital body includes the hybrid data generated from the light sensor output. GLE006.1 1 Preferably, the test module also has an array of hybridization chambers for interposing probes such that the probes within each of the hybridization chambers are configured to hybridize to one of the target nucleic acid sequences. GLE006.1 2 Preferably, the light sensor is registered with the hybrid chamber
光電二極體陣列。 GLE006.1 3 較佳地,該控制電路具有資料介面以供 傳輸雜交資料至外部裝置。 GLE006.1 4 較佳地,該樣品係自病患抽取,且該控 制電路係經組構以經由該資料介面下載病患資料並儲存該 病患資料於該數位記憶體。 GLE006.1 5 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制電路之活化信號而流至該雜交室。 -36- 201209402 GLE006.1 6 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥’該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE006.1 7 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。Photodiode array. GLE006.1 3 Preferably, the control circuit has a data interface for transmitting hybrid data to an external device. GLE006.1 4 Preferably, the sample is drawn from the patient and the control circuitry is configured to download patient data via the data interface and store the patient data in the digital memory. GLE006.1 5 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the control circuit. -36- 201209402 GLE006.1 6 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater. The meniscus anchor is configured to form a meniscus to prevent The capillary drive of the liquid is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE006.1 7 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole.
GLE006.1 8 較佳地,該測試模組亦具有倂有該支持 基板及該CMOS電路之LOC裝置,且具有與該容器流體 相通之樣品入口、併有該功能部之微系統技術(MST)層及 上蓋,其中該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE006.1 9 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE006.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環。 該易於使用、可大量生產又不貴之LOC裝置接受診 斷樣品並加以處理,由該LOC裝置之晶片上電子控制所 有該LOC裝置之功能。將該控制電子整合至該LOC裝置 使該模組無須特殊之外部支持即可利用該L〇C裝置’且 提供易於製造、可大量生產 '容易使用又不貴之低組件數 的模組。 GLE007.1 本發明之此態樣提供一種晶片上實驗室 -37- 201209402 (LOC)裝置,該LOC裝置用於安裝在測試模組以用於分析 樣品流體及與外部裝置溝通測試結果,該LOC裝置包含 支持基板; 樣品入口,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品;及GLE006.1 8 Preferably, the test module also has a LOC device having the support substrate and the CMOS circuit, and has a sample inlet in fluid communication with the container, and a micro system technology (MST) having the functional portion a layer and an upper cover, wherein the upper cover covers the MST layer and defines the reagent reservoirs. GLE006.1 9 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until The reagent is allowed to bind to the sample while contacting the sample stream to remove the meniscus. GLE006.20 Preferably, the PCR portion is configured to complete the thermal cycling of the sample within 30 seconds. The easy-to-use, mass-produced and inexpensive LOC device accepts and processes the sample and electronically controls all of the LOC devices on the wafer of the LOC device. Integrating the control electronics into the LOC device allows the module to utilize the L〇C device without special external support and provides a module that is easy to manufacture and mass-produces, which is easy to use and inexpensive. GLE007.1 This aspect of the invention provides a on-wafer laboratory-37-201209402 (LOC) device for mounting in a test module for analyzing sample fluid and communicating test results with an external device, the LOC The device includes a support substrate; a sample inlet for receiving the sample; a microsystem technology (MST) layer having a functional portion for processing and analyzing the sample;
在該支持基板上之CMOS電路,其係用於操作控制在 該測試模組中與外部裝置溝通之溝通介面。 GLE007.2 較佳地,該CMOS電路倂有通用性串列 匯流排(USB)裝置驅動器以操作控制在該測試模組中與外 部裝置溝通之USB接頭。 GLE007.3 較佳地,該C Μ Ο S電路係另經組構以在 該樣品之處理及分析期間操作控制該功能部。 GLE007.4 較佳地,該LOC裝置亦具有多個試劑The CMOS circuit on the support substrate is used to operate and control a communication interface communicated with the external device in the test module. GLE007.2 Preferably, the CMOS circuit has a universal serial bus (USB) device driver for operating a USB connector that communicates with the external device in the test module. GLE007.3 Preferably, the C Μ Ο S circuit is additionally configured to operate to control the functional portion during processing and analysis of the sample. GLE007.4 Preferably, the LOC device also has a plurality of reagents
貯器,該等試劑貯器含有用於處理該樣品之試劑,其中該 CMOS電路具有用於儲存關於該試劑識別資料之數位記憶 體。 GLE007.5 較佳地,儲存於該數位記憶體之資料係 用於該LOC裝置之獨特識別符。 GLE007.6 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記憶體之 作業資訊關於熱循環的時間及長度。 -38- 201209402A reservoir containing reagents for processing the sample, wherein the CMOS circuit has a digital memory for storing identification data relating to the reagent. GLE007.5 Preferably, the data stored in the digital memory is used for the unique identifier of the LOC device. GLE007.6 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample, and is stored in the sample The working information of the digital memory is about the time and length of the thermal cycle. -38- 201209402
GLE007.7 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE007.8 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。GLE007.7 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The culture temperature of the mixture during the digestion of the nucleic acid sequence by the restriction enzyme. GLE007.8 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture.
GLE007.9 較佳地,該LOC裝置亦具有探針陣列 ,以用於.與來自該PCR部之擴增子中的標的核酸序列雜交 GLE007.1 0 較佳地,儲存於該數位記億體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE007.il 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, φ 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射,且該CMOS電路併有光感應器以感測由該探針-標的 雜交體所發射之光子。 GLE007.1 2 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE007.1 3 較佳地,該LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE007.14 較佳地,該光感應器係配準該雜交室之 • 39 201209402 光電二極體陣列。 GLE007.1 5 較佳地,該CMOS電路係經組構以經由 該測試模組溝通介面傳輸該雜交資料至外部裝置。 GLE007.1 6 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該溝通介面下載病患資料並儲 存該病患資料於該數位記憶體。GLE007.9 Preferably, the LOC device also has a probe array for hybridizing with the target nucleic acid sequence in the amplicon from the PCR portion. GLE007.1 0 is preferably stored in the digit The data therein includes probe identification data to identify probes at various locations within the probe array. GLE007.il Preferably, each probe is configured to form a probe-target hybrid with a complementary nucleic acid sequence (included in the amplicon), φ the various probe-target hybrid systems are grouped The structure is configured to emit in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE007.1 2 Preferably, the data stored in the digital memory includes the hybrid data generated from the light sensor output. GLE007.1 3 Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that the probes within each of the hybridization chambers are organized to hybridize to one of the target nucleic acid sequences. GLE007.14 Preferably, the light sensor is a register of the 2012 09402 photodiode array of the hybridization chamber. GLE007.1 5 Preferably, the CMOS circuit is configured to transmit the hybrid data to an external device via the test module communication interface. GLE007.1 6 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the communication interface and store the patient data in the digital memory.
GLE007.1 7 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制電路之活化信號而流至該雜交室。 GLE007.1 8 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面鋪定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。GLE007.1 7 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the control circuit. GLE007.1 8 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus paver is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow.
GLE007.1 9 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE007.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環。 該易於使用、可大量生產又不貴之LOC裝置接受診 斷樣品並加以處理,由該LOC裝置之晶片上電子控制與 該宿主之資料及命令溝通。將該電子整合至該LOC裝置 使該模組無須特殊之外部支持即可利用該LOC裝置’且 提供易於製造、可大量生產、容易使用又不貴之低組件數 的模組。 -40- 201209402 GLE008.1 本發明之此態樣提供一種晶片上實驗室 (LOC)裝置,該LOC裝置用於安裝在測試模組以用於分析 樣品流體及與外部裝置溝通測試結果,該LOC裝置包含 支持基板; 樣品入□,其係用於接受該樣品;GLE007.1 9 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE007.20 Preferably, the PCR portion is configured to complete the thermal cycling of the sample within 30 seconds. The easy-to-use, mass-produced and inexpensive LOC device accepts and processes the sample and electronically controls the on-chip electronic control of the LOC device to communicate with the host's data and commands. Integrating the electronics into the LOC device allows the module to utilize the LOC device without special external support and provides a module that is easy to manufacture, mass-produced, easy to use, and inexpensive. -40- 201209402 GLE008.1 This aspect of the invention provides a on-wafer laboratory (LOC) device for mounting in a test module for analyzing sample fluid and communicating test results with an external device, the LOC The device comprises a support substrate; the sample is inserted into the □, which is used to receive the sample;
微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品;及 在該支持基板上之CMOS電路,該CMOS電路具有通 用性串列匯流排(USB)裝置驅動器以操作控制在該測試模 組中與該外部裝置溝通之USB接頭。 GLE008.2 較佳地,該C Μ 0 S電路係另經組構以在 該樣品之處理及分析期間操作控制該功能部。 GLE008.3 較佳地,該LOC裝置亦具有多個試劑 貯器,該等試劑貯器含有用於處理該樣品之試劑,其中該 CMOS電路具有用於儲存關於該試劑識別資料之數位記憶 體。 . GLE008.4 較佳地,儲存於該數位記憶體之資料係 用於該LOC裝置之獨特識別符。 GLE008.5 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記憶體之 作業資訊關於熱循環的時間及長度。a microsystem technology (MST) layer having a functional portion for processing and analyzing the sample; and a CMOS circuit on the support substrate having a versatile serial bus (USB) device driver for operation Controlling a USB connector that communicates with the external device in the test module. GLE008.2 Preferably, the C Μ 0 S circuit is otherwise configured to operate to control the functional portion during processing and analysis of the sample. GLE008.3 Preferably, the LOC device also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the CMOS circuitry has digital memory for storing identification data relating to the reagents. GLE008.4 Preferably, the data stored in the digital memory is used for the unique identifier of the LOC device. GLE008.5 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample, and stored in the sample The working information of the digital memory is about the time and length of the thermal cycle.
GLE008.6 較佳地,該等功能部包括位於該PCR -41 - 201209402 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE00 8.7 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE00 8.8 較佳地,該LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 〇 GLE00 8.9 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE008.1 0 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射,且該CMOS電路倂有光感應器以感測由該探針-標的 雜交體所發射之光子。 GLE008.il 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE008.1 2 較佳地,該數位記憶體包括隨機存取記 憶體(RAM)及快閃記憶體,該ram係經組構以儲存該雜 交資料且該快閃記憶體係經組構以儲存程式資料以操作該 功能部及該探針識別資料。 GLE00 8.1 3 較佳地,該LOC裝置亦具有雜交室陣 201209402 列’該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE008.14 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE008.1 5 較佳地,該USB裝置驅動器係經組構 以經由該USB接頭傳輸該雜交資料至外部裝置。GLE008.6 Preferably, the functional portions include a culture portion located upstream of the PCR -41 - 201209402 portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample The culture temperature of the mixture with the restriction enzyme during the digestion of the nucleic acid sequence by the restriction enzyme. GLE00 8.7 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE00 8.8 Preferably, the LOC device also has a probe array for hybridizing with the target nucleic acid sequence in the amplicon from the PCR portion. GLE00 8.9 Preferably, the data stored in the digital memory includes The probe identifies the data to identify probes at various locations within the array of probes. GLE008.1 0 Preferably, each probe is configured to form a probe-target hybrid with a complementary nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are grouped The structure is configured to emit in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE008.il Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GLE008.1 2 Preferably, the digital memory comprises a random access memory (RAM) and a flash memory, the ram is configured to store the hybrid data and the flash memory system is configured to store a program Data to operate the function and the probe identification data. GLE00 8.1 3 Preferably, the LOC device also has a hybrid array 201209402 column. The hybrid chamber array is adapted to contain probes such that the probes within each hybridization chamber are organized to hybridize to one of the target nucleic acid sequences. GLE008.14 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE008.1 5 Preferably, the USB device driver is configured to transmit the hybrid data to the external device via the USB connector.
GLE008.1 6 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該USB接頭下載病患資料並儲 存該病患資料於該數位記憶體。 GLE008.1 7 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制電路之活化信號而流至該雜交室。 GLE008.1 8 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE008.1 9 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE008.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環。 該具備整合性USB裝置控制器之易於使用、可大量 生產又不貴之LOC裝置接受診斷樣品並加以處理。將該 USB裝置控制器整合至該LOC裝置使該模組無須特殊之 -43- 201209402 外部支持即可利用該LOC裝置,且提供易於製造 量生產、容易使用又不貴之低組件數的模組。 GLE009.1 本發明之此態樣提供一種用於分 流體之晶片上實驗室(LOC)裝置,該LOC裝置包含 支持基板; 樣品入口,其係用於接受該樣品: 微系統技術(MST)層,該MST層具有功能部以 理及分析該樣品:及 介於該支持基板與該MST層之間的CMOS電 CMOS電路具有控制器以控制該功能部在該樣品之 分析期間所進行之作業。 GLE009.2 較佳地,該CMOS電路具有數位 以用於儲存在該樣品處理及分析期間由該控制器所 控制該等功能部之資料及作業資訊。 GLE009.3 較佳地,該LOC裝置亦具有多 貯器,該等試劑貯器含有用於處理該樣品之試劑, 存於該數位記憶體之資料係用於LOC裝置之獨特 ,該獨特識別符係與該試劑識別有關。 GLE009.4 較佳地,該樣品係含有基因物質 樣品,該等功能部中之一者係用於擴增該樣品中之 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記 作業資訊關於熱循環的時間及長度。 GLE009.5 較佳地,該等功能部包括位於f 部上游之培養部且該等試劑貯器中之一者係限制酶 、可大 析樣品 用於處 路,該 處理及 記憶體 使用以 個試劑 其中儲 識別符 之生物 核酸序 憶體之 该PCR 貯器, 44 - 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE009.6 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE009.7 較佳地,該LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交GLE008.1 6 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the USB connector and to store the patient data in the digital memory. GLE008.1 7 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the control circuit. GLE008.1 8 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE 008.1 9 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE008.20 Preferably, the PCR portion is configured to complete the thermal cycling of the sample within 30 seconds. The easy-to-use, mass-produced and inexpensive LOC device with integrated USB device controller accepts diagnostic samples and processes them. Integrating the USB device controller into the LOC device allows the module to utilize the LOC device without the need for special -43-201209402 external support, and provides a module that is easy to manufacture, easy to use, and inexpensive. GLE009.1 This aspect of the invention provides a wafer-on-lab (LOC) device for fluid separation, the LOC device comprising a support substrate; a sample inlet for receiving the sample: a microsystem technology (MST) layer The MST layer has a functional portion to analyze and analyze the sample: and a CMOS electric CMOS circuit interposed between the support substrate and the MST layer has a controller to control the operation of the functional portion during analysis of the sample. GLE009.2 Preferably, the CMOS circuit has digital bits for storing data and operational information of the functional units controlled by the controller during processing and analysis of the sample. GLE009.3 Preferably, the LOC device also has a multi-reservoir, the reagent reservoir contains reagents for processing the sample, and the data stored in the digital memory is unique to the LOC device, the unique identifier It is related to the identification of the reagent. GLE009.4 Preferably, the sample contains a sample of a genetic material, and one of the functional portions is used to amplify a polymerase chain reaction (PCR) portion of the sample, and is stored in the digital record Information about the time and length of the thermal cycle. GLE009.5 Preferably, the functional parts include a culture portion located upstream of the f portion, and one of the reagent reservoirs is a restriction enzyme, a sample can be used for the treatment, and the treatment and the memory are used. The PCR reservoir in which the reagent stores the identifier of the biological nucleic acid sequence, 44 - 201209402 The culture portion has a heater to maintain the culture temperature of the mixture of the sample and the restriction enzyme during the restriction enzyme digestion of the nucleic acid sequence. GLE009.6 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE009.7 Preferably, the LOC device also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion
GLE009.8 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE009.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射光子,且該CMOS電路併有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE009.1 0 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE009.il 較佳地,該LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE009.1 2 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE009.1 3 較佳地,該CMOS電路具有銲墊,且該 -45- 201209402 C Μ O S電路係經組構以傳輸雜交資料至外部裝置。 GLE009.1 4 較佳地’該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記憶體。 GLE009.1 5 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。GLE009.8 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GLE009.9 Preferably, each probe is configured to form a probe-target hybrid with a complementary target nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized Photons are emitted in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE009.1 0 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that the probes within each of the hybridization chambers are organized to hybridize to one of the target nucleic acid sequences. GLE009.1 2 Preferably, the light sensor is a register of the photodiode array of the hybridization chamber. GLE009.1 3 Preferably, the CMOS circuit has pads, and the -45-201209402 C Μ O S circuit is configured to transmit hybridization data to an external device. GLE009.1 4 Preferably the sample is drawn from the patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital memory. GLE009.1 5 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit.
GLE009.1 6 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE009.1 7 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。GLE009.1 6 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE009.1 7 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole.
GLE009.1 8 較佳地,該LOC裝置亦具有上蓋,其 中該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE009.1 9 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE009.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環》 該易於使用、可大量生產又不貴之L0C裝置接受診 斷樣品並加以處理,由該L 0 C裝置之整合性控制器控制 -46 - 201209402 所有該LOC裝置之功能。將該控制器整合至該LOC裝置 使該模組無須特殊之外部支持即可利用該LOC裝置,且 提供易於製造、可大量生產、容易使用又不貴之低組件數 的模組。 GLE010.1 本發明之此態樣提供一種用於分析樣品 流體之晶片上實驗室(LOC)裝置,該LOC裝置包含: 支持基板;GLE009.1 8 Preferably, the LOC device also has an upper cover, wherein the upper cover covers the MST layer and defines the reagent reservoirs. GLE009.1 9 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until The reagent is allowed to bind to the sample while contacting the sample stream to remove the meniscus. GLE009.20 Preferably, the PCR portion is configured to complete the thermal cycle of the sample within 30 seconds. The easy-to-use, mass-produced and inexpensive L0C device receives the diagnostic sample and processes it, from the L 0 C Integrated Controller Control for Units -46 - 201209402 All functions of this LOC unit. Integrating the controller into the LOC device allows the module to utilize the LOC device without special external support, and provides a module that is easy to manufacture, mass-produced, easy to use, and inexpensive. GLE010.1 This aspect of the invention provides a wafer-on-lab (LOC) device for analyzing a sample fluid, the LOC device comprising: a support substrate;
樣品入口,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品;及 介於該支持基板與該MST層之間的CMOS電路,該 CMOS電路具有數位記憶體以用於儲存在該樣品之處理及 分析期間操作控制該等功能部之資料及作業資訊。 GLE010.2 較佳地,該LOC裝置亦具有多個試劑 貯器,該等試劑貯器含有用於處理該樣品之試劑,其中儲 φ 存於該數位記憶體之資料關於該試劑識別。 GLE010.3 較佳地,儲存於該數位記憶體之資料係 用於該LOC裝置之獨特識別符。 GLE010.4 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部,且儲存於該數位記億體之 作業資訊關於熱循環的時間及長度。a sample inlet for receiving the sample; a microsystem technology (MST) layer having a functional portion for processing and analyzing the sample; and a CMOS circuit interposed between the support substrate and the MST layer, The CMOS circuit has digital memory for storing data and operational information for controlling the functions of the functional components during processing and analysis of the sample. GLE010.2 Preferably, the LOC device also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the information stored in the digital memory is identified by the reagent. GLE010.3 Preferably, the data stored in the digital memory is used for the unique identifier of the LOC device. GLE010.4 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample, and is stored in the sample The information on the operation of the digital body is about the time and length of the thermal cycle.
GLE010.5 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, -47- 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE010.6 較佳地,該LOC裝置亦具有溫度感測 器,其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE010.7 較佳地,該 LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 〇 GLE010.8 較佳地,儲存於該數位記億體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GLE010.9 較佳地,每種探針係經組構以與互補性GLE010.5 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir, -47-201209402, the culture portion has a heater to maintain the sample The culture temperature of the mixture with the restriction enzyme during the digestion of the nucleic acid sequence by the restriction enzyme. GLE 0106 Preferably, the LOC device also has a temperature sensor, wherein the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE010.7 Preferably, the LOC device also has a probe array for hybridizing with the target nucleic acid sequence in the amplicon from the PCR portion, GLE010.8 is preferably stored in the digital body The data includes probe identification data to identify probes at various locations within the array of probes. GLE010.9 Preferably, each probe is organized to complement each other
標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射光子,且該CMOS電路併有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE010.10 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GLE010.il 較佳地’該 LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE010.12 較佳地’該光感應器係配準該雜交室之 光電二極體陣列。 GLE010.13 較佳地,該CMOS電路具有銲墊,且該 -48- 201209402 CMOS電路係經組構以傳輸雜交資料至外部裝置。 GLE01 0.14 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記憶體。 GLE010.15 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。The target nucleic acid sequence (included in the amplicon) forms a probe-target hybrid, the various probe-target hybridization systems are configured to emit photons in response to the input, and the CMOS circuit has a light sensor Photons emitted by the probe-target hybrid are sensed. GLE 010.10 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that the probes within each of the hybridization chambers are organized to hybridize to one of the target nucleic acid sequences. GLE 010.12 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE010.13 Preferably, the CMOS circuit has pads, and the -48-201209402 CMOS circuit is configured to transmit hybridization data to an external device. GLE01 0.14 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital memory. GLE 010.15 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit.
GLE0 10.16 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE010.17 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE010.18 較佳地,該LOC裝置亦具有上蓋,其 φ 中該上蓋覆蓋該MST層且定義該等試劑貯器。 GLE010.19 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE010.20 較佳地,該PCR部係經組構以在30秒 內完成該樣品之熱循環。 該易於使用、可大量生產又不貴之LOC裝置接受診 斷樣品並加以處理,由該LOC裝置之整合性資料ram提 -49- 201209402 供中介資料儲存。將該資料RAM整合至該LOC裝置使該 模組無須特殊之外部支持即可利用該L Ο C裝置,且提供 易於製造、可大量生產、容易使用又不貴之低組件數的模 組。 GLE0 1 1 · 1 本發明之此態樣提供一種用於分析樣品 流體之晶片上實驗室(LOC)裝置,該LOC裝置包含: 支持基板;GLE0 10.16 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary flow of the liquid The heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow. GLE 010.17 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE 010.18 Preferably, the LOC device also has an upper cover, wherein the upper cover covers the MST layer and defines the reagent reservoirs. GLE 010.19 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until contact When the sample stream is removed to remove the meniscus, the reagent is combined with the sample. GLE010.20 Preferably, the PCR portion is configured to complete the thermal cycling of the sample within 30 seconds. The easy-to-use, mass-produced and inexpensive LOC device accepts and processes the sample, and the integrated data of the LOC device is used to store the intermediate data. Integrating the data RAM into the LOC device allows the module to utilize the L Ο C device without special external support, and provides a module that is easy to manufacture, mass-produced, easy to use, and inexpensive. GLE0 1 1 · 1 This aspect of the invention provides a wafer-on-lab (LOC) device for analyzing a sample fluid, the LOC device comprising: a support substrate;
樣品入□,其係用於接受該樣品; 微系統技術(MST)層,該MST層具有功能部以用於處 理及分析該樣品:及 介於該支持基板與該MST層之間的CMOS電路,該 CMOS電路具有快閃記憶體以用於儲存程式資料以在該樣 品之處理及分析期間操作該等功能部。 GLE011.2 較佳地,該LOC裝置亦具有多個試劑a sample is introduced into the sample for receiving the sample; a microsystem technology (MST) layer having a functional portion for processing and analyzing the sample: and a CMOS circuit interposed between the support substrate and the MST layer The CMOS circuit has flash memory for storing program data to operate the functions during processing and analysis of the sample. GLE011.2 Preferably, the LOC device also has a plurality of reagents
貯器,該等試劑貯器含有用於處理該樣品之試劑,其中該 快閃記憶體亦儲存與該試劑識別有關之資料。 GLE011.3 較佳地,該資料包括用於LOC裝置之 獨特識別符。 GLE0 11.4 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部’且儲存於該數位記憶體之 作業資訊關於熱循環的時間及長度。The reservoir, the reagent reservoir containing reagents for processing the sample, wherein the flash memory also stores information relating to the identification of the reagent. GLE011.3 Preferably, the information includes a unique identifier for the LOC device. GLE0 11.4 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is used to amplify a polymerase chain reaction (PCR) portion of the nucleic acid sequence in the sample and is stored in the digit The job information of the memory is about the time and length of the thermal cycle.
GLE0 11.5 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, -50- 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GLE011.6 較佳地,該LOC裝置亦具有溫度感測 器’其中該CMOS電路使用該溫度感測器之輸出以反饋控 制該培養部。 GLE011.7 較佳地,該LOC裝置亦具有探針陣列 ,以用於與來自該PCR部之擴增子中的標的核酸序列雜交 GLE011.8 較佳地,該快閃記憶體儲存探針識別資 料,以識別在該探針陣列內各個位置之探針。 GLE011.9 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對輸入有所反應而發 射光子,且該CMOS電路倂有光感應器以感測由該探針-標的雜交體所發射之光子。GLE0 11.5 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir, -50-201209402, the culture portion has a heater to maintain the sample and The culture temperature of the restriction enzyme mixture during the digestion of the nucleic acid sequence by the restriction enzyme. GLE 011.6 Preferably, the LOC device also has a temperature sensor 'where the CMOS circuit uses the output of the temperature sensor to feedback control the culture. GLE011.7 Preferably, the LOC device also has a probe array for hybridizing to the target nucleic acid sequence in the amplicon from the PCR portion. GLE011.8 Preferably, the flash memory storage probe is identified. Data to identify probes at various locations within the probe array. GLE011.9 Preferably, each probe is configured to form a probe-target hybrid with a complementary target nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized Photons are emitted in response to the input, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid.
GLE011.10 較佳地,該CMOS電路具有隨機存取記 憶體(RAM),該RAM係經組構以儲存由該光感應器輸出 所產生之雜交資料。 GLE011.il 較佳地,該LOC裝置亦具有雜交室陣 列,該雜交室陣列用於包含探針以使各該雜交室內之探針 經組構以與該標的核酸序列之一雜交。 GLE011.12 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE011.13 較佳地,該CMOS電路具有銲墊,且該 -51 - 201209402 CMOS電路係經組構以傳輸雜交資料至外部裝置。 G L E 0 1 1 . 1 4 較佳地’該樣品係自病患抽取,且該 CMOS電路係經組構以經由該銲墊下載病患資料並儲存該 病患資料於該數位記憶體。 GLE01 1.15 較佳地’該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。GLE011.10 Preferably, the CMOS circuit has a random access memory (RAM) configured to store the hybrid data produced by the output of the light sensor. Preferably, the LOC device also has an array of hybridization chambers for interposing probes such that probes within each of the hybridization chambers are configured to hybridize to one of the target nucleic acid sequences. GLE011.12 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE011.13 Preferably, the CMOS circuit has pads, and the -51 - 201209402 CMOS circuit is configured to transmit hybridization data to an external device. G L E 0 1 1 . 1 4 Preferably the sample is drawn from a patient and the CMOS circuit is configured to download patient data via the pad and store the patient data in the digital memory. GLE01 1.15 Preferably the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit.
GLE01 1 .16 較佳地’該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE011.17 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。GLE01 1 .16 preferably 'the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary of the liquid A drive stream is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow. GLE011.17 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole.
GLE01 1 .18 較佳地,該 LOC裝置亦具有上蓋,其 中該上蓋覆蓋該M ST層且定義該等試劑貯器& GLE011.19 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE01 1 .20 較佳地,該P C R部係經組構以在3 0秒 內完成該樣品之熱循環。 該具備整合性程式及資料快閃記憶體之易於使用、可 大量生產又不貴之微流體裝置接受輸入流體並加以處理。 -52- 201209402 該快閃記憶體係用於儲存該裝置及倂有該裝置之模組在作 業期間所需之資料及程式。將快閃記憶體整合至該裝置提 供易於製造、可大量生產、容易使用又不貴之低組件數的 微流體系統。 GLE012.1 本發明之此態樣提供一種用於分析樣品 流體及與資料庫溝通流行病學資料之測試模組,該測試模 組包含:GLE01 1 .18 Preferably, the LOC device also has an upper cover, wherein the upper cover covers the M ST layer and defines the reagent reservoirs & GLE011.19 Preferably, the reagent reservoirs each have a meniscus setting A surface tension valve of an anchor for forming a meniscus to retain the reagent therein until the sample is removed to remove the meniscus, the reagent is with the sample Combine. GLE01 1 .20 Preferably, the P C R portion is organized to complete the thermal cycling of the sample in 30 seconds. The easy-to-use, mass-produced and inexpensive microfluidic device with integrated program and data flash memory accepts input fluid and processes it. -52- 201209402 This flash memory system is used to store the information and programs required for the device and the modules containing the device during the operation. The integration of flash memory into the device provides a microfluidic system that is easy to manufacture, mass-produced, easy to use, and inexpensive. GLE012.1 This aspect of the invention provides a test module for analyzing a sample fluid and communicating epidemiological data to a database, the test set comprising:
容器,其係用於接受該樣品; 功能部,其係用於處理及分析該樣品: 溝通介面,其係用於與該流行病學資料庫溝通;及 控制器,其係用於操作控制該溝通介面。 GLE012.2 較佳地,該測試模組亦具有通用性串列 匯流排(USB)接頭,其中該溝通介面係裝置驅動器以用於 操作控制該USB接頭以與外部裝置溝通。 GLE012.3 較佳地,該測試模組亦具有數位記憶體 以用於儲存流行病學資料。 GLE012.4 較佳地,該測試模組亦具有多個試劑貯 器,該等試劑貯器含有用於處理該樣品之試劑,其中儲存 於該數位記憶體之資料包括該試劑識別。 GLE012.5 較佳地,儲存於該數位記憶體之資料包 括用於測試模組之獨特識別符。 GLE012.6 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部。 -53- 201209402a container for receiving the sample; a functional portion for processing and analyzing the sample: a communication interface for communicating with the epidemiological database; and a controller for operating the control Communication interface. GLE012.2 Preferably, the test module also has a universal serial bus (USB) connector, wherein the communication interface is a device driver for operating the USB connector to communicate with an external device. GLE012.3 Preferably, the test module also has digital memory for storing epidemiological data. GLE012.4 Preferably, the test module also has a plurality of reagent reservoirs containing reagents for processing the sample, wherein the data stored in the digital memory includes the reagent identification. GLE012.5 Preferably, the data stored in the digital memory includes a unique identifier for the test module. GLE012.6 Preferably, the sample is a biological sample containing a genetic material, one of the functional portions being a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample. -53- 201209402
GLE012.7 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物的酶 反應溫度。 GLE012.8 較佳地,該測試模組亦具有CMOS電路 及溫度感測器,其中該CMOS電路併有數位記憶體且使用 該溫度感測器之輸出以反饋控制該培養部。GLE012.7 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The enzymatic reaction temperature of the mixture. GLE012.8 Preferably, the test module also has a CMOS circuit and a temperature sensor, wherein the CMOS circuit has digital memory and uses the output of the temperature sensor to feedback control the culture.
GLE012.9 較佳地,該測試模組亦具有探針陣列, 以用於與來自該PCR部之擴增子中的標的核酸序列雜交。 GLE012.10 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對激發有所反應而發 射光子,且該CMOS電路併有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE0 12.il 較佳地,該測試模組亦具有雜交室陣列GLE012.9 Preferably, the test module also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion. GLE012.10 Preferably, each probe is configured to form a probe-target hybrid with a complementary nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized The photons are emitted in response to the excitation, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE0 12.il Preferably, the test module also has a hybrid chamber array
,該雜交室陣列用於包含探針以使各該雜交室內之探針經 組構以與該標的核酸序列之一雜交。 GLE012.12 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE0 1 2. 1 3 較佳地,該C Μ Ο S電路係經組構以與外 部裝置溝通雜交資料。 GLE012.14 較佳地,該樣品係自病患抽取,且該 CMOS電路係經組構以下載及儲存該病患資料於該數位記 憶體。 -54- 201209402 GLE01 2.1 5 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。 GLE012.16 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細The hybrid chamber array is adapted to contain probes such that the probes within each of the hybridization chambers are configured to hybridize to one of the target nucleic acid sequences. GLE012.12 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE0 1 2. 1 3 Preferably, the C Μ Ο S circuit is organized to communicate hybridization information with an external device. GLE012.14 Preferably, the sample is drawn from a patient and the CMOS circuit is configured to download and store the patient data in the digital memory. -54- 201209402 GLE01 2.1 5 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit. GLE012.16 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore capillary
GLE012.17 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE012.18 較佳地,該測試模組亦具有LOC裝置 ,該LOC裝置含有與該容器流體相通之樣品入口、支持 基板、微系統技術(MST)層、介於該支持基板與該MST層 之間的CMOS電路及上蓋,其中該CMOS電路併有該數位 記憶體、該溝通介面、該控制器,該MST層併有該功能 φ 部,且該上蓋覆蓋該MST層及定義該等試劑貯器。 GLE012.19 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE012.20 較佳地,該PCR部具有不到4秒之熱 循環時間。 該易於使用、可大量生產 '不貴且可攜帶之診斷測試 模組接受生化樣品並處理及分析該樣品,根據源自該樣品 -55- 201209402 之診斷結果更新流行病學資料庫。 該流行病學資料庫之更新提供增進之科學基礎以用於 功能化該診斷測試模組及對流行病學狀況之理想高度反應 。該以診斷測試模組爲基底之自動化更新資料庫將爲健康 資訊系統提供大量品質及經濟上之好處。GLE012.17 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE012.18 Preferably, the test module also has a LOC device having a sample inlet, a support substrate, a microsystem technology (MST) layer in fluid communication with the container, and between the support substrate and the MST layer. Between the CMOS circuit and the upper cover, wherein the CMOS circuit has the digital memory, the communication interface, the controller, the MST layer has the function φ portion, and the upper cover covers the MST layer and defines the reagent reservoirs . GLE012.19 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until contact When the sample stream is removed to remove the meniscus, the reagent is combined with the sample. GLE012.20 Preferably, the PCR portion has a thermal cycle time of less than 4 seconds. This easy-to-use, mass-produced 'unusual and portable diagnostic test module accepts biochemical samples and processes and analyzes the sample, updating the epidemiological database based on the diagnostic results derived from the sample -55- 201209402. The update of the epidemiological database provides an enhanced scientific basis for functionalizing the diagnostic test module and the ideal high response to epidemiological conditions. The automated update database based on the diagnostic test module will provide a number of quality and economic benefits to the health information system.
GLE013.1 本發明之此態樣提供一種用於分析樣品 流體及與流行病學資料庫溝通本地資料之測試模組,該測 試模組包含: 容器,其係用於接受該樣品; 功能部,其係用於處理及分析該樣品: 溝通介面,其係用於與該流行病學資料庫溝通;及控 ㈣1腳㈣ί乍㈣削齡® 1 Φ , 該控制器係經組構以關聯本地資料與傳送至該溝通介 面之流行病學資料以用於與該流行病學資料庫溝通。 GLE013.2 較佳地,該測試模組亦具有通用性串列GLE013.1 This aspect of the invention provides a test module for analyzing a sample fluid and communicating local data with an epidemiological database, the test module comprising: a container for receiving the sample; a functional portion, It is used to process and analyze the sample: the communication interface, which is used to communicate with the epidemiological database; and the control (4) 1 foot (4) 乍 (4) aging age 1 1 Φ , the controller is organized to correlate local data Epidemiological data transmitted to the communication interface for communication with the epidemiological database. GLE013.2 Preferably, the test module also has a universal serial
匯流排(USB)接頭,其中該溝通介面係USB裝置驅動器以 用於操作控制該USB接頭以與外部裝置溝通。 GLE013.3 較佳地,該控制器係經組構以與該流行 病學資料庫自動溝通而不須由使用者啓動。 GLE013.4 較佳地,該測試模組亦具有使用者介面 ’該使用者介面可用於輸入資料至該控制器以與該流行病 學資料庫溝通。 GLE013.5 較佳地,該測試模組亦具有數位記憶體 以用於儲存流行病學資料。 -56 - 201209402 GLE013.6 較佳地,該測試模組亦具有多個試劑貯 器,該等試劑貯器含有用於處理該樣品之試劑,其中儲存 於該數位記憶體之資料包括該試劑識別。 GLE013.7 較佳地,.儲存於該數位記憶體之資料包 括用於測試模組之獨特識別符。 GLE013.8 較佳地,該樣品係含有基因物質之生物A busbar (USB) connector, wherein the communication interface is a USB device driver for operating and controlling the USB connector to communicate with an external device. GLE 013.3 Preferably, the controller is configured to automatically communicate with the epidemiological database without the need for user activation. GLE013.4 Preferably, the test module also has a user interface. The user interface can be used to input data to the controller to communicate with the epidemiological database. GLE013.5 Preferably, the test module also has digital memory for storing epidemiological data. -56 - 201209402 GLE013.6 Preferably, the test module also has a plurality of reagent reservoirs, the reagent reservoirs containing reagents for processing the sample, wherein the data stored in the digital memory includes the reagent identification . GLE013.7 Preferably, the data stored in the digital memory includes a unique identifier for the test module. GLE013.8 Preferably, the sample is a biological material-containing organism
樣品,該等功能部中之一者係用於擴增該樣品中之核酸序 列之聚合酶連鎖反應(PCR)部。 GLE013.9 較佳地,該測試模組亦具有CMOS電路 及溫度感測器,其中該CMOS電路倂有數位記憶體且使用 該溫度感測器之輸出以反饋控制該PCR部。 GLE013.10 較佳地,該測試模組亦具有探針陣列, 以用於與來自該PCR部之擴增子中的標的核酸序列雜交。 GLE013.il 較佳地,每種探針係經組構以與互補性 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體, 該各種探針-標的雜交體係經組構以對激發有所反應而發 射光子,且該CMOS電路倂有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE013.12 較佳地,該測試模組亦具有雜交室陣列 ,該雜交室陣列用於包含探針以使各該雜交室內之探針經 組構以與該標的核酸序列之一雜交。 GLE013.13 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE013.14 較佳地,該CMOS電路係經組構以溝通 -57- 201209402 雜交資料至外部裝置。 GLE0 1 3.15 較佳地,該樣品係自病患抽取,且該 C Μ Ο S電路係經組構以下載及儲存該病患資料於該數位記 憶體。 GLE013.16 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。 GLE01 3.1 7 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE013.18 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣。 GLE013.19 較佳地,該測試模組亦具有LOC裝置 ,該LOC裝置含有與該容器流體相通之樣品入口、支持 基板、微系統技術(MST)層、介於該支持基板與該MS T層 之間的CMOS電路及上蓋,其中該CMOS電路倂有該數位 記憶體、該溝通介面、該控制器,該MST層倂有該功能 部,且該上蓋覆蓋該MST層及定義該等試劑貯器。 GLE013.20 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 -58- 201209402 該易於使用、可大量生產、不貴且可攜帶之診斷測試 模組接受生化樣品並處理及分析該樣品,根據源自該樣品 之診斷結果及該測試地點資料更新流行病學資料庫。A sample, one of the functional portions, is used to amplify a polymerase chain reaction (PCR) portion of the nucleic acid sequence in the sample. GLE013.9 Preferably, the test module also has a CMOS circuit and a temperature sensor, wherein the CMOS circuit has digital memory and uses the output of the temperature sensor to feedback control the PCR portion. GLE013.10 Preferably, the test module also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion. GLE013.il Preferably, each probe is configured to form a probe-target hybrid with a complementary target nucleic acid sequence (included in the amplicon), the various probe-target hybrid systems are organized The photons are emitted in response to the excitation, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE013.12 Preferably, the test module also has an array of hybridization chambers for interposing probes such that the probes within each of the hybridization chambers are configured to hybridize to one of the target nucleic acid sequences. GLE013.13 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GLE013.14 Preferably, the CMOS circuit is configured to communicate -57-201209402 hybrid data to an external device. GLE0 1 3.15 Preferably, the sample is drawn from a patient and the C Μ Ο S circuit is configured to download and store the patient data in the digital memory. GLE013.16 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit. GLE01 3.1 7 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow. GLE013.18 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent the edge of the hole. GLE013.19 Preferably, the test module also has a LOC device having a sample inlet, a support substrate, a microsystem technology (MST) layer in fluid communication with the container, between the support substrate and the MS T layer Between the CMOS circuit and the upper cover, wherein the CMOS circuit has the digital memory, the communication interface, the controller, the MST layer has the functional portion, and the upper cover covers the MST layer and defines the reagent reservoir . GLE013.20 Preferably, the reagent reservoirs each have a surface tension valve for setting a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until contact When the sample stream is removed to remove the meniscus, the reagent is combined with the sample. -58- 201209402 This easy-to-use, mass-produced, inexpensive and portable diagnostic test module accepts biochemical samples and processes and analyzes the sample, updating epidemiological data based on the diagnostic results from the sample and the test site data. Library.
以該診斷結果及地點資料更新流行病學資料庫提供增 進之科學基礎以用於功能化該診斷測試模組及對流行病學 狀況之理想高度反應。該以診斷測試模組爲基底之自動化 更新資料庫將爲健康資訊系統提供大量品質及經濟上之好 處。 GLE014.1 本發明之此態樣提供一種用於分析樣品 流體及與醫學資料庫溝通資料之測試模組,該測試模組包 含: 容器,其係用於接受該樣品; 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該醫學資料庫溝通;及 控制器,其係用於操作控制該溝通介面。 GLE014.2 較佳地,該如申請專利範圍第1項之測 試模組另包含通用性串列匯流排(USB)接頭,其中該溝通 介面係USB裝置驅動器以用於操作控制該USB接頭以與 外部裝置溝通。 GLE014.3 較佳地,該如申請專利範圍第2項之測 試模組另包含數位記憶體,其中該醫學資料庫儲存電子健 康紀錄(EHR)、電子醫學紀錄(EMR)及個人健康紀錄(PHR) ,且該數位記憶體係經組構以用於儲存與EHR、EMR及 PHR相關之資料。 201209402 GLE01 4.4 較佳地,該如申請專利範圍第3項之測 試模組另包含多個試劑貯器,該等試劑貯器含有用於處理 該樣品之試劑,其中儲存於該數位記憶體之資料包括該試 劑識別。 GLE014.5 較佳地,儲存於該數位記憶體之資料包 括用於測試模組之獨特識別符。 GLE01 4.6 較佳地,該樣品係含有不同大小之細胞Updating the epidemiological database with this diagnostic result and location data provides an enhanced scientific basis for functionalizing the diagnostic test module and the ideal high response to epidemiological conditions. The automated update database based on the diagnostic test module will provide a number of quality and economic benefits for the health information system. GLE014.1 This aspect of the invention provides a test module for analyzing a sample fluid and communicating with a medical library, the test module comprising: a container for receiving the sample; a functional portion, which is used Processing and analyzing the sample; a communication interface for communicating with the medical database; and a controller for operating and controlling the communication interface. GLE014.2 Preferably, the test module of claim 1 further comprises a universal serial bus (USB) connector, wherein the communication interface is a USB device driver for operating and controlling the USB connector to External device communication. GLE014.3 Preferably, the test module of claim 2 includes a digital memory, wherein the medical database stores an electronic health record (EHR), an electronic medical record (EMR), and a personal health record (PHR). And the digital memory system is configured to store data related to EHR, EMR, and PHR. 201209402 GLE01 4.4 Preferably, the test module according to claim 3 of the patent application further comprises a plurality of reagent reservoirs, the reagent reservoirs containing reagents for processing the samples, wherein the data stored in the digital memory This reagent identification is included. GLE014.5 Preferably, the data stored in the digital memory includes a unique identifier for the test module. GLE01 4.6 Preferably, the sample contains cells of different sizes
的生物樣品,該等功能部中之一者係用於擴增該樣品中之 核酸序列之聚合酶連鎖反應(PCR)部。 GLE0 14.7 較佳地,該如申請專利範圍第6項之測 試模組另包含CMOS電路及溫度感測器,其中該CMOS電 路倂有數位記億體且使用該溫度感測器之輸出以反饋控制 該PCR部。 GLE014.8 較佳地,該等功能部中之一者係透析部The biological sample, one of the functional portions, is a polymerase chain reaction (PCR) portion for amplifying a nucleic acid sequence in the sample. GLE0 14.7 Preferably, the test module according to claim 6 further comprises a CMOS circuit and a temperature sensor, wherein the CMOS circuit has a digital body and uses the output of the temperature sensor for feedback control. This PCR section. GLE014.8 Preferably, one of the functional units is a dialysis department
,該透析部係經組構以分離大於預定閥値之細胞至一部分 之樣品,該部分之樣品係與其餘僅包含小於該預定閥値之 細胞之樣品分開處理。 GLE014.9 較佳地,該等功能部中之一者係溶胞部 ,該溶胞部係經組構以釋放小於預設閥値之細胞內的核酸 序歹1J ^ GLE0 14.10 較佳地,該如申請專利範圍第9項之測 試模組另包含探針陣列,以用於與來自該PCR部之擴增子 中的標的核酸序列雜交。 GLE014.il 較佳地,每種探針係經組構以與互補性 -60- 201209402 標的核酸序列(包含於該擴增子中)形成探針-標的雜交體’ 該各種探針-標的雜交體係經組構以對激發有所反應而發 射光子,且該CMOS電路倂有光感應器以感測由該探針-標的雜交體所發射之光子。 GLE01 4.1 2 較佳地,該如申請專利範圍第1 1項之 測試模組另包含雜交室陣列,該雜交室陣列用於包含探針 以使各該雜交室內之探針經組構以與該標的核酸序列之一The dialysis section is configured to separate a sample of the cells larger than the predetermined valve to a portion of the sample that is treated separately from the remaining sample containing only cells smaller than the predetermined valve. GLE014.9 Preferably, one of the functional portions is a lysis unit that is configured to release a nucleic acid sequence within a cell that is less than a predetermined valve 歹1J ^ GLE0 14.10. Preferably, The test module of claim 9 of the patent application further comprises a probe array for hybridization with the target nucleic acid sequence in the amplicon from the PCR portion. GLE014.il Preferably, each probe is configured to form a probe-target hybrid with the nucleic acid sequence of the complementary -60-201209402 (included in the amplicon). The system is configured to emit photons in response to excitation, and the CMOS circuit has a light sensor to sense photons emitted by the probe-target hybrid. GLE01 4.1 2 Preferably, the test module of claim 11 further comprises a hybridization chamber array for containing probes to organize the probes within each of the hybridization chambers to One of the target nucleic acid sequences
雜交。 GLE014.13 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GLE014.14 較佳地,該C Μ Ο S電路係經組構以溝通 雜交資料至外部裝置。 GLE014.15 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該CMOS電路之活化信號而流至該雜交室。Hybrid. GLE014.13 Preferably, the light sensor is configured to register a photodiode array of the hybridization chamber. GLE014.14 Preferably, the C Μ Ο S circuit is organized to communicate hybridization data to an external device. GLE014.15 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the CMOS circuit.
GLE014.16 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 GLE014.17 較佳地,該彎液面錨定器係孔,該加熱 器具有環形狀且位於鄰近該孔之邊緣》 GLE014.18 較佳地,該如申請專利範圍第5項之測 試模組另包含LOC裝置’該LOC裝置含有與該容器流體 201209402 相通之樣品入□、支持基板、微系統技術(M ST)層、介於 該支持基板與該MST層之間的CMOS電路及上蓋,其中 該CMOS電路倂有該數位記憶體、該溝通介面、該控制器 ,該MST層倂有該功能部,且該上蓋覆蓋該MST層及定 義該等試劑貯器。GLE014.16 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow. GLE014.17 Preferably, the meniscus anchor is a hole having a ring shape and located adjacent to the edge of the hole. GLE014.18 Preferably, the test module of claim 5 is Also included is a LOC device comprising a sample inlet, a support substrate, a microsystem technology (M ST) layer, a CMOS circuit and an upper cover interposed between the support substrate and the MST layer, wherein the LOC device is in communication with the container fluid 201209402, wherein The CMOS circuit has the digital memory, the communication interface, the controller, the MST layer has the functional portion, and the upper cover covers the MST layer and defines the reagent reservoirs.
GLE014.19 較佳地,該等試劑貯器各具有設置彎液 面錨定器之表面張力閥,該彎液面錨定器係用於形成彎液 面以將該試劑保留於其中,直到接觸該樣品流而移除該彎 液面時,該試劑得以與該樣品結合。 GLE014.20 較佳地,該PCR部具有不到4秒之熱 循環時間。 該易於使用、可大量生產、不貴且可攜帶之診斷測試 模組接受生化樣品並處理及分析該樣品,且根據源自該樣 品之診斷結果更新病患之資料庫。GLE014.19 Preferably, the reagent reservoirs each have a surface tension valve configured to define a meniscus anchor, the meniscus anchor used to form a meniscus to retain the reagent therein until contact When the sample stream is removed to remove the meniscus, the reagent is combined with the sample. GLE014.20 Preferably, the PCR portion has a thermal cycle time of less than 4 seconds. The easy-to-use, mass-produced, inexpensive, and portable diagnostic test module accepts biochemical samples and processes and analyzes the sample, and updates the patient's database based on the diagnostic results derived from the sample.
以該診斷結果及地點資料更新病患之資料庫提供改善 之病患健康照護服務、自動維持病患之醫學紀錄、增進之 科學基礎以用於功能化該診斷測試模組及對流行病學狀況 之理想高度反應。該以診斷測試模組爲基底之自動化更新 資料庫將爲健康資訊系統提供大量品質及經濟上之好處。 GRE00 1.1 本發明之此態樣提供一種用於分析樣品 流體及與行動電話溝通測試結果之微流體測試模組,該微 流體測試模組包含: 設有接受樣品之容器之外殻; 功能部,其係用於處理及分析該樣品; -62- 201209402 溝通介面,其係用於與該行動電話溝通:及 控制器,其係用於操作控制該溝通介面。 GRE001.2 較佳地,該溝通介面係通用性串列匯流 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 置溝通之USB接頭。 GRE001.3 較佳地,該USB裝置驅動器係經組構 以自該行動電話取電以供應電力給該控制器及該功能部。Updating the patient's database with the diagnosis and location information to provide improved patient health care services, automatically maintaining the medical record of the patient, and improving the scientific basis for functionalizing the diagnostic test module and epidemiological status The ideal is highly reactive. The automated update database based on the diagnostic test module will provide a number of quality and economic benefits to the health information system. GRE00 1.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with a mobile phone, the microfluidic test module comprising: a housing having a container for receiving a sample; a functional portion, It is used to process and analyze the sample; -62- 201209402 communication interface for communicating with the mobile phone: and a controller for operating and controlling the communication interface. GRE001.2 Preferably, the communication interface is a universal serial bus (USB) device driver operative to control a USB connector that communicates with an external device in the test module. GRE001.3 Preferably, the USB device driver is configured to draw power from the mobile phone to supply power to the controller and the functional portion.
GRE00 1.4 較佳地,該控制器係另經組構以在該樣 品之處理及分析期間操作控制該功能部。 GRE00 1 . 5 較佳地,該控制器係經組構以經由該行 動電話下載資料。 GRE001.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記憶體。 GRE001.7 較佳地,儲存於該數位記憶體之資料係 φ 用於該微流體測試模組之獨特識別符。 GRE001.8 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。 GRE001.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記億體之資料包括熱循環時間 及循環次數。GRE 00 1.4 Preferably, the controller is otherwise configured to operate to control the functional portion during processing and analysis of the sample. GRE00 1.5. Preferably, the controller is configured to download data via the mobile phone. GRE 01.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs containing reagents for processing the sample and digital memory for storing identification data for the reagents. GRE001.7 Preferably, the data stored in the digital memory is used for the unique identifier of the microfluidic test module. GRE001.8 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material. GRE001.9 Preferably, the nucleic acid amplification portion is a polymerase chain reaction (PCR) portion and the data stored in the digitizer includes thermal cycle time and number of cycles.
GRE001.10 較佳地,該等功能部包括位於該PCR \ 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, -63- 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GRE001.11 較佳地,該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 雜交。GRE001.10 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir, -63-201209402, the culture portion has a heater to maintain the The culture temperature of the mixture of the sample and the restriction enzyme during the digestion of the nucleic acid sequence by the restriction enzyme. GRE001.11 Preferably, the microfluidic test module also has a probe array for hybridization to a target nucleic acid sequence in an amplicon from the PCR portion.
GRE001.12 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GRE00 1 · 1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針·標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針-標的雜交體所發射之光 子。GRE001.12 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GRE00 1 · 1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe with a complementary nucleic acid sequence (included in the amplicon). The subject hybrids are configured to emit photons in response to input, and the light sensors are configured to sense photons emitted by the probe-target hybrid.
GRE001.14 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GRE001.15 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE001.16 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE001.17 較佳地,該控制器係經組構以傳送該雜 交資料至該行動電話。 GRE001.18 較佳地,該樣品係自病患抽取,且該控 -64- 201209402 制器係經組構以經由該行動電話下載病患資料並儲存該病 患資料於該數位記憶體。 GRE001.19 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制器之活化信號而流至該雜交室。GRE001.14 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GRE001.15 Preferably, the microfluidic test module also has a hybridization chamber array for interposing probes such that the probes within each hybridization chamber are organized to hybridize to one of the target nucleic acid sequences. GRE001.16 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GRE001.17 Preferably, the controller is configured to transmit the hash material to the mobile phone. GRE001.18 Preferably, the sample is drawn from a patient, and the controller is configured to download patient data via the mobile phone and store the patient data in the digital memory. GRE001.19 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the controller.
GRE001.20 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流》 該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通埠係與行動電 話/智慧型手機介接,該行動電話/智慧型手機提供該模組 電力、計算、溝通及使用者介面支持。行動電話/智慧型 手機係可廣泛且不貴地取得,免除專用、笨重且昂貴之模 組支持系統之需求。 GRE002.1 本發明之此態樣提供一種用於分析樣品 流體及與膝上型電腦溝通測試結果之微流體測試模組,該 微流體測試模組包含: 設有接受樣品之谷§&之外殼; 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該膝上型電腦溝通;及 -65- 201209402 控制器,其係用於操作控制該溝通介面。 GRE002.2 較佳地,該溝通介面係通用性串列匯流 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 置溝通之USB接頭。 GRE002.3 較佳地,該USB裝置驅動器係經組構 以自該膝上型電腦取電以供應電力給該控制器及該功能部GRE001.20 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow. The easy to use, mass produced, inexpensive, lightweight and portable The fluid diagnostic test module has a complete set of reagents required to receive the sample and process and analyze the sample material using the integrated sensor of the module, and provide an electronic result at the output of the sample. The module's communication system is connected to a mobile phone/smartphone. The mobile phone/smart phone provides power, computing, communication and user interface support for the module. Mobile phones/smart phones are widely and inexpensively available, eliminating the need for dedicated, cumbersome and expensive modular support systems. GRE002.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with a laptop, the microfluidic test module comprising: a §& a housing; a functional unit for processing and analyzing the sample; a communication interface for communicating with the laptop; and a -65-201209402 controller for controlling the communication interface. GRE002.2 Preferably, the communication interface is a universal serial bus (USB) device driver operative to control a USB connector that communicates with an external device in the test module. GRE002.3 Preferably, the USB device driver is configured to draw power from the laptop to supply power to the controller and the functional unit
GRE002.4 較佳地,該控制器係另經組構以在該樣 品之處理及分析期間操作控制該功能部。 GRE002.5 較佳地,該控制器係經組構以經由該膝 上型電腦下載資料。 GRE002.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記憶體。 GRE002.7 較佳地,儲存於該數位記憶體之資料係GRE 002.4 Preferably, the controller is otherwise configured to operate to control the functional portion during processing and analysis of the sample. GRE002.5 Preferably, the controller is configured to download data via the laptop. GRE002.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs containing reagents for processing the sample and digital memory for storing identification data for the reagents. GRE002.7 Preferably, the data stored in the digital memory
用於微流體測試模組之獨特識別符。 GRE002.8 較佳地’該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。 GRE002.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記憶體之資料包括熱循環時間 及循環次數。A unique identifier for the microfluidic test module. GRE002.8 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material. GRE002.9 Preferably, the nucleic acid amplification portion is a polymerase chain reaction (PCR) portion and the data stored in the digital memory includes thermal cycle time and number of cycles.
GRE002.1 0 較佳地,該等功能部包括位於該 PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, -66- 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GRE002.1 1 較佳地’該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 雜交。 GRE002.12 較佳地’儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 • 針。 GRE002.1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針-標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針-標的雜交體所發射之光 子。 GRE002.1 4 較佳地,儲存於該數位記憶體之資料包 % 括自該光感應器輸出所產生之雜交資料。 GRE002.1 5 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE002.1 6 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE002.1 7 較佳地,該控制器係經組構以傳送該雜 交資料至該膝上型電腦。 GRE002. 1 8 較佳地,該樣品係自病患抽取,且該控 -67- 201209402 制器係經組構以經由該膝上型電腦下載病患資料並儲存該 病患資料於該數位記憶體。 GRE002.1 9 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制器之活化信號而流至該雜交室。GRE002.1 0 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir, -66-201209402, the culture portion has a heater to maintain the The culture temperature of the mixture of the sample and the restriction enzyme during the digestion of the nucleic acid sequence by the restriction enzyme. GRE 002.1 1 Preferably the microfluidic test module also has a probe array for hybridization to a target nucleic acid sequence in an amplicon from the PCR portion. GRE 002.12 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GRE002.1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe-target with a complementary nucleic acid sequence (included in the amplicon) Hybrids, the various probe-target hybridization systems are configured to emit photons in response to input, and the light sensor is configured to sense photons emitted by the probe-target hybrid. GRE002.1 4 Preferably, the data packet stored in the digital memory includes the hybrid data generated by the light sensor output. GRE002.1 5 Preferably, the microfluidic test module also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences . GRE002.1 6 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GRE 002.1 7 Preferably, the controller is configured to transmit the hash data to the laptop. GRE002. 1 8 Preferably, the sample is taken from a patient, and the controller is configured to download patient data via the laptop and store the patient data in the digital memory. body. GRE 002.1 9 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the controller.
GRE002.20 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。GRE002.20 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to recover the capillary drive flow.
該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通場係與膝上型 電腦/筆電介接,該膝上型電腦/筆電提供該模組電力、計 算、溝通及使用者介面支持。膝上型電腦/筆電係可廣泛 且不貴地取得,免除專用、笨重且昂貴之模組支持系統之 需求。 GRE003.1 本發明之此態樣提供一種用於分析樣品 流體及與特別爲了微流體測試模組所建造之專用閱讀器溝 通測試結果之微流體測試模組,該微流體測試模組包含: 設有接受樣品之容器之外殼: 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該專用閱讀器溝通;及 -68- 201209402 控制器,其係用於操作控制該溝通介面。 GRE003.2 較佳地,該溝通介面係通用性串列匯流 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 置溝通之USB接頭。 GRE003.3 較佳地,該USB裝置驅動器係經組構 以自該專用閱讀器取電以供應電力給該控制器及該功能部The easy-to-use, mass-produced, inexpensive, lightweight, and portable microfluidic diagnostic test module has a complete library of reagents required to receive samples and process and analyze the sample material using the integrated sensor of the module. And provide electronic results at the output of the other. The communication field of the module is interfaced with a laptop/notebook, which provides power, calculation, communication and user interface support for the module. The laptop/notebook system is widely and inexpensively available, eliminating the need for a dedicated, cumbersome and expensive modular support system. GRE003.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with a dedicated reader specifically constructed for the microfluidic test module, the microfluidic test module comprising: a housing having a sample receiving container: a functional portion for processing and analyzing the sample; a communication interface for communicating with the dedicated reader; and -68-201209402 controller for operating control Communication interface. GRE003.2 Preferably, the communication interface is a universal serial bus (USB) device driver operative to control a USB connector that communicates with an external device in the test module. GRE003.3 Preferably, the USB device driver is configured to draw power from the dedicated reader to supply power to the controller and the functional unit
GRE003.4 較佳地,該控制器係另經組構以在該樣 品之處理及分析期間操作控制該功能部。 GRE003.5 較佳地,該控制器係經組構以經由該專 用閱讀器下載資料》 GRE003.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記億體。 GRE003.7 較佳地,儲存於該數位記憶體之資料係 φ 用於微流體測試模組之獨特識別符。 GRE003.8 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。 GRE003.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記億體之資料包括熱循環時間 及循環次數。GRE003.4 Preferably, the controller is otherwise configured to operate to control the functional portion during processing and analysis of the sample. GRE003.5 Preferably, the controller is configured to download data via the dedicated reader. GRE003.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs, the reagent reservoirs containing A reagent for processing the sample and a digital body for storing the identification data of the reagent. GRE003.7 Preferably, the data stored in the digital memory is φ for the unique identifier of the microfluidic test module. GRE003.8 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material. GRE003.9 Preferably, the nucleic acid amplification part is a polymerase chain reaction (PCR) part and the data stored in the digital body includes thermal cycle time and number of cycles.
GRE003.1 0 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器·中之一者係限制酶貯器, -69- 201209402 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GRE003.1 1 較佳地,該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 雜交。GRE003.1 0 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir, -69-201209402, the culture portion has a heater to maintain The mixture of the sample and the restriction enzyme is cultured during the digestion of the nucleic acid sequence by the restriction enzyme. GRE003.1 1 Preferably, the microfluidic test module also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion.
GRE003.1 2 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。 GRE003.1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針-標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針-標的雜交體所發射之光 子。GRE003.1 2 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes. GRE003.1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe-target with a complementary nucleic acid sequence (included in the amplicon) Hybrids, the various probe-target hybridization systems are configured to emit photons in response to input, and the light sensor is configured to sense photons emitted by the probe-target hybrid.
GRE003.1 4 較佳地,儲存於該數位記億體之資料包 括自該光感應器輸出所產生之雜交資料。 GRE003.1 5 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE003.1 6 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE003.1 7 較佳地,該控制器係經組構以傳送該雜 交資料至該專用閱讀器。 GRE003.1 8 較佳地,該樣品係自病患抽取,且該控 -70- 201209402 制器係經組構以經由該專用閱讀器下載病患資料並儲存該 病患資料於該數位記憶體。 GRE003.1 9 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制器之活化信號而流至該雜交室》 GRE003.20 較佳地,該主動閥係設有彎液面錨定器GRE003.1 4 Preferably, the data stored in the digital body includes the hybrid data generated from the light sensor output. GRE003.1 5 Preferably, the microfluidic test module also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences . GRE003.1 6 Preferably, the light sensor is a register of the photodiode array of the hybridization chamber. GRE 003.1 7 Preferably, the controller is configured to transmit the hybrid data to the dedicated reader. GRE003.1 8 Preferably, the sample is taken from a patient, and the controller is configured to download patient data and store the patient data in the digital memory via the dedicated reader. . GRE003.1 9 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the controller" GRE003.20 Preferably, the active valve system is provided with a meniscus anchor
及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。 該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通埠係與不貴且 可攜帶之專用閱讀器介接,該專用閱讀器提供該模組電力 、計算、溝通及使用者介面支持。該專用閱讀器免除笨重 且昂貴之模組支持系統之需求。 GRE004.1 本發明之此態樣提供一種用於分析樣品 流體及與桌上型電腦溝通測試結果之微流體測試模組,該 微流體測試模組包含: 設有接受樣品之容器之外殻; 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該桌上型電腦溝通;及 控制器,其係用於操作控制該溝通介面。 -71 - 201209402 GRE004.2 較佳地,該溝通介面係通用性串列匯流 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 置溝通之USB接頭。 GRE004.3 較佳地,該USB裝置驅動器係經組構 以自該桌上型電腦取電以供應電力給該控制器及該功能部 GRE004.4 較佳地,該控制器係另經組構以在該樣And a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary flow of the liquid, the heater being used to boil the liquid to anchor from the meniscus The meniscus is released at the device to restore the capillary drive flow. The easy-to-use, mass-produced, inexpensive, lightweight, and portable microfluidic diagnostic test module has a complete library of reagents required to receive samples and process and analyze the sample material using the integrated sensor of the module. And provide electronic results at the output of the other. The module's communication system is interfaced with a non-expensive and portable dedicated reader that provides power, computing, communication and user interface support for the module. This dedicated reader eliminates the need for cumbersome and expensive modular support systems. GRE004.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with a desktop computer, the microfluidic test module comprising: a housing having a container for receiving a sample; a functional unit for processing and analyzing the sample; a communication interface for communicating with the desktop computer; and a controller for operating and controlling the communication interface. -71 - 201209402 GRE004.2 Preferably, the communication interface is a universal serial bus (USB) device driver for operating a USB connector that communicates with an external device in the test module. GRE004.3 Preferably, the USB device driver is configured to draw power from the desktop computer to supply power to the controller and the function portion GRE004.4. Preferably, the controller is otherwise configured In this way
品之處理及分析期間操作控制該功能部。 GRE004.5 較佳地,該控制器係經組構以經由該桌 上型電腦下載資料。 GRE004.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記憶體。 GRE004.7 較佳地,儲存於該數位記憶體之資料係 用於微流體測試模組之獨特識別符。The function is controlled during the processing and analysis of the product. GRE004.5 Preferably, the controller is configured to download data via the desktop computer. GRE004.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs containing reagents for processing the sample and digital memory for storing identification data for the reagents. GRE004.7 Preferably, the data stored in the digital memory is a unique identifier for the microfluidic test module.
GRE004.8 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。 GRE004.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記億體之資料包括熱循環時間 及循環次數。GRE004.8 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material. GRE004.9 Preferably, the nucleic acid amplification part is a polymerase chain reaction (PCR) part and the data stored in the digital body includes thermal cycle time and number of cycles.
GRE004.1 0 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 -72- 201209402 限制酶消化該核酸序列期間的培養溫度。 GRE004.1 1 較佳地,該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 雜交。 GRE004.12 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。GRE004.1 0 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The mixture is subjected to a culture temperature during which the restriction enzyme digests the nucleic acid sequence at -72 to 201209402. GRE004.1 1 Preferably, the microfluidic test module also has a probe array for hybridization to a target nucleic acid sequence in an amplicon from the PCR portion. GRE004.12 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes.
GRE004.1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針-標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針-標的雜交體所發射之光 子。 GRE004.14 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GRE004.1 5 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE004.16 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE004.1 7 較佳地,該控制器係經組構以傳送該雜 交資料至該桌上型電腦。 GRE004.1 8 較佳地,該樣品係自病患抽取,且該控 制器係經組構以經由該桌上型電腦下載病患資料並儲存該 -73- 201209402 病患資料於該數位記憶體。 GRE004.1 9 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制器之活化信號而流至該雜交室。GRE004.1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe-target with a complementary nucleic acid sequence (included in the amplicon) Hybrids, the various probe-target hybridization systems are configured to emit photons in response to input, and the light sensor is configured to sense photons emitted by the probe-target hybrid. GRE004.14 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GRE004.1 5 Preferably, the microfluidic test module also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are configured to hybridize to one of the target nucleic acid sequences . GRE004.16 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GRE004.1 7 Preferably, the controller is configured to transmit the hash data to the desktop computer. GRE004.1 8 Preferably, the sample is taken from a patient, and the controller is configured to download patient data via the desktop computer and store the patient data in the digital memory. . GRE004.1 9 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the controller.
GRE004.20 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。GRE004.20 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow.
該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通埠係與桌上型 電腦介接,該桌上型電腦提供該模組電力、計算、溝通及 使用者介面支持。桌上型電腦係可廣泛地取得且不貴,免 除專用、笨重且昂貴之模組支持系統之需求。 GRE005.1 本發明之此態樣提供一種用於分析樣品 流體及與電子書閱讀器溝通測試結果之微流體測試模組, 該微流體測試模組包含: 設有接受樣品之容器之外殼; 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該電子書閱讀器溝通;及 控制器,其係用於操作控制該溝通介面。 GRE005.2 較佳地,該溝通介面係通用性串列匯流 -74- 201209402 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 置溝通之USB接頭。 GRE005.3 較佳地,該USB裝置驅動器係經組構 以自該電子書閱讀器取電以供應電力給該控制器及該功能 部。 GRE005.4 較佳地,該控制器係另經組構以在該樣 品之處理及分析期間操作控制該功能部。The easy-to-use, mass-produced, inexpensive, lightweight, and portable microfluidic diagnostic test module has a complete library of reagents required to receive samples and process and analyze the sample material using the integrated sensor of the module. And provide electronic results at the output of the other. The module's communication system is interfaced with a desktop computer that provides power, computing, communication and user interface support for the module. Desktop computers are widely available and inexpensive, eliminating the need for dedicated, cumbersome and expensive modular support systems. GRE005.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with an e-book reader, the microfluidic test module comprising: a housing having a container for receiving a sample; The department is for processing and analyzing the sample; the communication interface is for communicating with the e-book reader; and the controller is for operating and controlling the communication interface. GRE005.2 Preferably, the communication interface is a universal serial confluence -74-201209402 row (USB) device driver for operating a USB connector that communicates with the external device in the test module. GRE 00 5.3 Preferably, the USB device driver is configured to draw power from the e-book reader to supply power to the controller and the functional portion. GRE 005.4 Preferably, the controller is otherwise configured to operate to control the functional portion during processing and analysis of the sample.
GRE005.5 較佳地,該控制器係經組構以經由該電 子書閱讀器下載資料》 GRE005.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記憶體。 GRE005.7 較佳地,儲存於該數位記億體之資料係 用於微流體測試模組之獨特識別符。 GRE005.8 較佳地,該樣品係含有基因物質之生物 φ 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。 GRE005.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記憶體之資料包括熱循環時間 及循環次數$ GRE005.1 0 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 -75- 201209402 GRE005.1 1 較佳地,該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 雜交。 GRE005.1 2 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。GRE005.5 Preferably, the controller is configured to download data via the e-book reader. GRE005.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs, the reagent reservoirs Contains reagents for processing the sample and digital memory for storing identification data for the reagent. GRE005.7 Preferably, the data stored in the digitizer is a unique identifier for the microfluidic test module. GRE005.8 Preferably, the sample is a biological φ sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material. GRE005.9 Preferably, the nucleic acid amplification part is a polymerase chain reaction (PCR) part and the data stored in the digital memory includes a thermal cycle time and a cycle number of $ GRE005.1 0. Preferably, the functional parts Included in the culture portion upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain a mixture of the sample and the restriction enzyme during the restriction enzyme digestion of the nucleic acid sequence Culture temperature. -75- 201209402 GRE005.1 1 Preferably, the microfluidic test module also has a probe array for hybridization with a target nucleic acid sequence in an amplicon from the PCR portion. GRE005.1 2 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes.
GRE005.1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針-標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針·標的雜交體所發射之光 子。 GRE005.1 4 較佳地,儲存於該數位記億體之資料包 括自該光感應器輸出所產生之雜交資料。GRE005.1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe-target with a complementary target nucleic acid sequence (included in the amplicon) Hybrids, the various probe-target hybridization systems are configured to emit photons in response to an input, and the light sensor is configured to sense photons emitted by the probe-target hybrid. GRE005.1 4 Preferably, the data stored in the digital body includes the hybrid data generated from the light sensor output.
GRE005.1 5 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE005.1 6 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE005.1 7 較佳地,該控制器係經組構以傳送該雜 交資料至該電子書閱讀器。 GRE005.1 8 較佳地,該樣品係自病患抽取,且該控 制器係經組構以經由該電子書閱讀器下載病患資料並儲存 該病患資料於該數位記憶體。 -76- 201209402 GRE005.1 9 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 自該控制器之活化信號而流至該雜交室。 GRE005.20 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細GRE005.1 5 Preferably, the microfluidic test module also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are organized to hybridize to one of the target nucleic acid sequences . GRE005.1 6 Preferably, the light sensor is a register of the photodiode array of the hybridization chamber. GRE 005.1 7 Preferably, the controller is configured to transmit the hash data to the e-book reader. GRE 005.1 8 Preferably, the sample is drawn from a patient and the controller is configured to download patient data via the e-book reader and store the patient data in the digital memory. -76- 201209402 GRE005.1 9 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to flow to the hybridization chamber in response to an activation signal from the controller . GRE005.20 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore capillary
驅動流。 該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通埠係與電子書 閱讀器介接,該電子書閱讀器提供該模組電力、計算、溝 通及使用者介面支持》電子書閱讀器係可廣泛且不貴地取 得,免除專用、笨重且昂貴之模組支持系統之需求。 GRE007.1 本發明之此態樣提供一種用於分析樣品 流體及與平板電腦溝通測試結果之微流體測試模組,該微 流體測試模組包含: 設有接受樣品之容器之外殼; 功能部,其係用於處理及分析該樣品; 溝通介面,其係用於與該平板電腦溝通;及 控制器,其係用於操作控制該溝通介面。 GRE007.2 較佳地,該溝通介面係通用性串列匯流 排(USB)裝置驅動器以操作控制在該測試模組中與外部裝 -77- 201209402 置溝通之USB接頭。 GRE007.3 較佳地,該USB裝置驅動器係經組構 以自該平板電腦取電以供應電力給該控制器及該功能部。 GRE007.4 較佳地,該控制器係另經組構以在該樣 品之處理及分析期間操作控制該功能部。 GRE007.5 較佳地,該控制器係經組構以經由該平 板電腦下載資料。Drive the stream. The easy-to-use, mass-produced, inexpensive, lightweight, and portable microfluidic diagnostic test module has a complete library of reagents required to receive samples and process and analyze the sample material using the integrated sensor of the module. And provide electronic results at the output of the other. The communication system of the module is interfaced with an e-book reader, and the e-book reader provides power, calculation, communication and user interface support of the module. The e-book reader system can be widely and inexpensively obtained, and is exempt from special use. The cumbersome and expensive module support system needs. GRE007.1 This aspect of the invention provides a microfluidic test module for analyzing a sample fluid and communicating test results with a tablet computer, the microfluidic test module comprising: a housing having a container for receiving a sample; a functional portion, It is used to process and analyze the sample; a communication interface for communicating with the tablet; and a controller for operating and controlling the communication interface. GRE007.2 Preferably, the communication interface is a universal serial bus (USB) device driver for operating and controlling a USB connector in the test module that communicates with the external device -77-201209402. GRE007.3 Preferably, the USB device driver is configured to draw power from the tablet to supply power to the controller and the functional portion. GRE 07.4 Preferably, the controller is otherwise configured to operate to control the functional portion during processing and analysis of the sample. GRE007.5 Preferably, the controller is configured to download data via the tablet computer.
GRE007.6 較佳地,該微流體測試模組亦具有多個 試劑貯器,該等試劑貯器含有用於處理該樣品之試劑及用 於儲存關於該試劑識別資料之數位記憶體》 GRE007.7 較佳地,儲存於該數位記憶體之資料係GRE007.6 Preferably, the microfluidic test module also has a plurality of reagent reservoirs containing reagents for processing the sample and digital memory for storing identification data of the reagents. GRE007. 7 Preferably, the data stored in the digital memory is
I 用於微流體測試模組之獨特識別符。 GRE007.8 較佳地,該樣品係含有基因物質之生物 樣品,該等功能部中之一者係用於擴增該基因物質中之核 酸序列之核酸擴增部。I Unique identifier for microfluidic test modules. GRE007.8 Preferably, the sample is a biological sample containing a genetic material, and one of the functional portions is a nucleic acid amplification portion for amplifying a nucleic acid sequence in the genetic material.
GRE007.9 較佳地,該核酸擴增部係聚合酶連鎖反 應(PCR)部且儲存於該數位記憶體之資料包括熱循環時間 及循環次數》GRE007.9 Preferably, the nucleic acid amplification part is a polymerase chain reaction (PCR) part and the data stored in the digital memory includes thermal cycle time and number of cycles.
GRE007.1 0 較佳地,該等功能部包括位於該PCR 部上游之培養部且該等試劑貯器中之一者係限制酶貯器, 該培養部具有加熱器以維持該樣品與限制酶之混合物在該 限制酶消化該核酸序列期間的培養溫度。 GRE007.1 1 較佳地,該微流體測試模組亦具有探針 陣列,以用於與來自該PCR部之擴增子中的標的核酸序列 -78- 201209402 雜交。 GRE007.12 較佳地,儲存於該數位記憶體中之資料 包括探針識別資料,以識別在該探針陣列內各個位置之探 針。GRE007.1 0 Preferably, the functional portions include a culture portion located upstream of the PCR portion and one of the reagent reservoirs is a restriction enzyme reservoir having a heater to maintain the sample and the restriction enzyme The mixture is at a culture temperature during which the restriction enzyme digests the nucleic acid sequence. GRE007.1 1 Preferably, the microfluidic test module also has a probe array for hybridization with the target nucleic acid sequence -78-201209402 in the amplicon from the PCR portion. GRE 007.12 Preferably, the data stored in the digital memory includes probe identification data to identify probes at various locations within the array of probes.
GRE007.1 3 較佳地,該微流體測試模組亦具有光感 應器,其中每種探針係經組構以與互補性標的核酸序列( 包含於該擴增子中)形成探針-標的雜交體,該各種探針-標 的雜交體係經組構以對輸入有所反應而發射光子,且該光 感應器係經組構以感測由該探針-標的雜交體所發射之光 子。 GRE007.14 較佳地,儲存於該數位記憶體之資料包 括自該光感應器輸出所產生之雜交資料。 GRE007.1 5 較佳地,該微流體測試模組亦具有雜交 室陣列,該雜交室陣列用於包含探針以使各該雜交室內之 探針經組構以與該標的核酸序列之一雜交。 GRE007.1 6 較佳地,該光感應器係配準該雜交室之 光電二極體陣列。 GRE007.1 7 較佳地,該控制器係經組構以傳送該雜 交資料至該平板電腦。 GRE007.1 8 較佳地,該樣品係自病患抽取,且該控 制器係經組構以經由該平板電腦下載病患資料並儲存該病 患資料於該數位記憶體。 GRE007.1 9 較佳地,該PCR部具有主動閥以用於 在熱循環期間將液體保留於該PCR部且允許該液體回應來 -79- 201209402 自該控制器之活化信號而流至該雜交室。 GRE007.20 較佳地,該主動閥係設有彎液面錨定器 及加熱器之沸騰啓動閥,該彎液面錨定器係經組構以形成 彎液面以阻止該液體之毛細驅動流,該加熱器係用於煮沸 該液體以自該彎液面錨定器處釋放該彎液面,以恢復毛細 驅動流。GRE007.1 3 Preferably, the microfluidic test module also has a light sensor, wherein each probe is configured to form a probe-target with a complementary nucleic acid sequence (included in the amplicon) Hybrids, the various probe-target hybridization systems are configured to emit photons in response to input, and the light sensor is configured to sense photons emitted by the probe-target hybrid. GRE007.14 Preferably, the data stored in the digital memory comprises hybridization data generated from the light sensor output. GRE007.1 5 Preferably, the microfluidic test module also has an array of hybridization chambers for interposing probes such that probes within each hybridization chamber are organized to hybridize to one of the target nucleic acid sequences . GRE007.1 6 Preferably, the light sensor is associated with a photodiode array of the hybridization chamber. GRE007.1 7 Preferably, the controller is configured to transmit the hash data to the tablet. GRE007.1 8 Preferably, the sample is drawn from a patient and the controller is configured to download patient data via the tablet and store the patient data in the digital memory. GRE007.1 9 Preferably, the PCR portion has an active valve for retaining liquid in the PCR portion during thermal cycling and allowing the liquid to respond to -79-201209402 from the activation signal of the controller to the hybridization room. GRE007.20 Preferably, the active valve is provided with a meniscus anchor and a boiling start valve of the heater, the meniscus anchor is configured to form a meniscus to prevent capillary driving of the liquid Flow, the heater is used to boil the liquid to release the meniscus from the meniscus anchor to restore the capillary drive flow.
該易於使用、可大量生產、不貴、輕巧且可攜帶之微 流體診斷測試模組具有完備之所需試劑存量,其接受樣品 並利用該模組之整合式感測器處理及分析該樣品物質,且 在彼之輸出埠提供電子結果。該模組之溝通埠係與平板電 腦介接,該平板電腦提供該模組電力、計算、.溝通及使用 者介面支持。平板電腦係可廣泛且不貴地取得,免除專用 、笨重且昂貴之模組支持系統之需求。 GMV001.1 本發明之此態樣提供一種用於試劑分配 設備之試劑微量瓶,該微量瓶包含:The easy-to-use, mass-produced, inexpensive, lightweight, and portable microfluidic diagnostic test module has a complete library of reagents required to receive samples and process and analyze the sample material using the integrated sensor of the module. And provide electronic results at the output of the other. The module's communication system is interfaced with a tablet computer that provides power, computing, communication and user interface support for the module. Tablet PCs are widely and inexpensively available, eliminating the need for dedicated, cumbersome and expensive modular support systems. GMV001.1 This aspect of the invention provides a reagent microbottle for a reagent dispensing device comprising:
容器,其係用於容納一定體積之試劑; 數位記億體,其係用於儲存關於該試劑之資料; 液滴產生器,其係用於自該容器射出試劑之液滴;及 電接觸件,其係用於連接該試劑分配設備中之控制處 理器,以接受用於該液滴產生器之驅動脈衝及提供資料至 該控制處理器。 GMV001.2 較佳地,該容器容納介於28 2微升至 4 0 0微升之試劑。 GMV00 1.3 較佳地,該液滴產生器係經組構以射出 -80- 201209402 體積介於50皮升至150皮升之液滴。 GMV001.4 較佳地,該液滴產生器具有壓電致動器 GMV001.5 較佳地,該資料包括傳送至該控制處理 器之識別資料。 GMV001.6 較佳地,該識別資料係區別該微量瓶與 所有其他微量瓶之獨特識別資料。a container for containing a volume of reagent; a digitizer for storing information about the reagent; a droplet generator for droplets ejecting the reagent from the container; and an electrical contact And for connecting to a control processor in the reagent dispensing device to receive a drive pulse for the drop generator and to provide data to the control processor. GMV001.2 Preferably, the container holds between 28 and 2 microliters of reagent. GMV00 1.3 Preferably, the droplet generator is configured to emit droplets of between -50 and 201209402 in volume from 50 picoliters to 150 picoliters. GMV001.4 Preferably, the droplet generator has a piezoelectric actuator GMV001.5. Preferably, the data includes identification data transmitted to the control processor. GMV001.6 Preferably, the identification data distinguishes the unique identification data of the micro-bottle with all other micro-bottles.
GMV001.7 較佳地,該資料係經加密。 該具有非揮發性數位記憶體之試劑微量瓶係用來接受 試劑、儲存試劑,並在數位控制下利用液滴產生器分配試 劑。該液滴產生器係爲該微量瓶之一部分提供自備且體積 及位置精準之試劑分配技術,以簡化利用該微量瓶之自動 化製造環境之複雜性、增加利用該微量瓶之自動化製造環 境之可靠性及減少利用該微量瓶之自動化製造環境之成本 該數位記憶體係用於儲存在自動化製造環境中功能化 該裝置期間所需之資訊。該數位記憶體係爲該微量瓶之一 部分提供在自動化製造環境中簡單可用、可靠、安全、保 全且不貴之試劑分配方法。 GMV002.1 本發明之此態樣提供一種用於試劑分配 設備之試劑微量瓶,該微量瓶包含: 容器,其係用於容納一定體積之試劑; 整合式電路,其具有用於儲存關於該微量瓶之識別之 資料的數位記憶體;及 -81 - 201209402 電接觸件’其係用於連接該試劑分配設備中之控制處 理器以提供資料至該控制處理器,以用於與真實微量瓶識 別資料之清單比較。 GMV002.2 較佳地,該微量瓶亦具有液滴產生器以 用於自該容器射出試劑液滴。 GMV002.3 較佳地,該容器容納介於 282微升至 400微升之試劑。GMV001.7 Preferably, the data is encrypted. The reagent microbottle with non-volatile digital memory is used to receive reagents, store reagents, and dispense reagents using a droplet generator under digital control. The droplet generator provides a self-contained, volumetric and positionally accurate reagent dispensing technique for one of the microbottles to simplify the complexity of the automated manufacturing environment in which the microbottle is utilized and to increase the reliability of the automated manufacturing environment utilizing the microbottle. And the cost of an automated manufacturing environment that utilizes the micro-bottle. The digital memory system is used to store the information needed to functionalize the device in an automated manufacturing environment. The digital memory system provides a simple, reliable, safe, safe and inexpensive reagent dispensing method for one of the microbottles in an automated manufacturing environment. GMV002.1 This aspect of the invention provides a reagent microbottle for a reagent dispensing device, the microbottle comprising: a container for containing a volume of reagent; an integrated circuit having a means for storing The digital memory of the identification data of the bottle; and -81 - 201209402 electrical contact' is used to connect the control processor in the reagent dispensing device to provide information to the control processor for identification with the real micro-bottle Comparison of the list of information. GMV002.2 Preferably, the micro vial also has a droplet generator for ejecting reagent droplets from the container. GMV002.3 Preferably, the container holds between 282 microliters and 400 microliters of reagent.
GMV002.4 較佳地,該液滴產生器係經組構以射出 體積介於50皮升至150皮升之液滴。 GMV002.5 較佳地,該液滴產生器具有壓電致動器 GMV002.6 較佳地,該識別資料係區別該微量瓶與 所有其他微量瓶之獨特識別資料。 GMV002.7 較佳地,該資料係經加密。GMV002.4 Preferably, the droplet generator is configured to emit droplets having a volume between 50 picoliters and 150 picoliters. GMV002.5 Preferably, the droplet generator has a piezoelectric actuator GMV002.6. Preferably, the identification data distinguishes the unique identification data of the micro-bottle with all other micro-bottles. GMV002.7 Preferably, the data is encrypted.
該具有驗證積體電路之試劑微量瓶係用來接受試劑、 儲存試劑,並在數位控制下利用液滴產生器分配試劑。該 液滴產生器係爲該微量瓶之一部分提供自備且體積及位置 精準之試劑分配技術,以簡化利用該微量瓶之自動化製造 環境之複雜性、增加利用該微量瓶之自動化製造環境之可 靠性及減少利用該微量瓶之自動化製造環境之成本。 該驗證積體電路係用於儲存在自動化製造環境中功能 化該裝置期間所使用之微量瓶驗證資訊。該驗證積體電路 係爲該微量瓶之一部分提供在自動化製造環境中簡單可用 、可靠、安全、保全且不貴之試劑分配方法。 -82- 201209402 GMV003.1 本發明之此態樣提供一種用於試劑分配 設備之試劑微量瓶,該微量瓶包含: 容器’其係用於容納一定體積之試劑; 積體電路,其具有數位記憶體以儲存關於該試劑特徵 規格之試劑資料;及The reagent microbottle with the verification integrated circuit is used to accept reagents, store reagents, and dispense reagents using a droplet generator under digital control. The droplet generator provides a self-contained, volumetric and positionally accurate reagent dispensing technique for one of the microbottles to simplify the complexity of the automated manufacturing environment in which the microbottle is utilized and to increase the reliability of the automated manufacturing environment utilizing the microbottle. And reduce the cost of an automated manufacturing environment that utilizes the micro vials. The verification integrated circuit is used to store micro-bottle validation information used during functionalization of the device in an automated manufacturing environment. The verification integrated circuit provides a simple, reliable, safe, secure, and inexpensive reagent dispensing method for one of the micro vials in an automated manufacturing environment. -82- 201209402 GMV003.1 This aspect of the invention provides a reagent micro-bottle for a reagent dispensing device, the micro-bottle comprising: a container for holding a volume of reagent; an integrated circuit having digital memory Body to store reagent information about the characteristics of the reagent; and
電接觸件,其係用於連接該試劑分配設備中之控制處 理器以提供資料至該控制處理器以供下載至有該試劑供應 之裝置。 GMV003.2 較佳地,該微量瓶亦具有液滴產生器以 用於自該容器射出試劑液滴。 GMV003.3 較佳地,該容器容納介於282微升至 400微升之試劑。 GMV003.4 較佳地,該液滴產生器係經組構以射出 體積介於50皮升至150皮升之液滴。 GMV003.5 較佳地,該液滴產生器具有壓電致動器 GMV003.6 較佳地,該識別資料係區別該微量瓶與 所有其他微量瓶之獨特識別資料。 GMV003.7 較佳地,該資料係經加密。 該具有非揮發性數位記憶體之試劑微量瓶係用來接受 試劑、儲存試劑,並在數位控制下利用液滴產生器分配試 劑。該液滴產生器係爲該微量瓶之一部分提供自備且體積 及位置精準之試劑分配技術,以簡化利用該微量瓶之自動 化製造環境之複雜性、增加利用該微量瓶之自動化製造環 -83- 201209402 境之可靠性及減少利用該微量瓶之自動化製造環境之成本An electrical contact is provided for connection to a control processor in the reagent dispensing device to provide data to the control processor for download to a device having the reagent supply. GMV003.2 Preferably, the micro vial also has a droplet generator for ejecting reagent droplets from the container. GMV003.3 Preferably, the container holds between 282 microliters and 400 microliters of reagent. GMV003.4 Preferably, the droplet generator is configured to eject droplets having a volume between 50 picoliters and 150 picoliters. GMV003.5 Preferably, the droplet generator has a piezoelectric actuator GMV003.6. Preferably, the identification data distinguishes the unique identification data of the micro-bottle with all other micro-bottles. GMV003.7 Preferably, the data is encrypted. The reagent microbottle with non-volatile digital memory is used to receive reagents, store reagents, and dispense reagents using a droplet generator under digital control. The droplet generator provides a self-contained and volumetric and accurate reagent dispensing technique for one part of the micro-bottle to simplify the complexity of the automated manufacturing environment utilizing the micro-bottle and to increase the automated manufacturing of the micro-bottle using the micro-bottle-83 - 201209402 Reliability of the environment and the cost of reducing the automated manufacturing environment in which the micro vials are utilized
該數位記憶體係用於儲存在自動化製造環境中功能化 該裝置期間所需之資訊。儲存於該記憶體中之資訊包括由 自動化製造環境之部門寫入該記億體中之試劑規格資料。 此資訊自該記憶體被讀取且如該自動化製造環境之其他部 門所需之利用。該數位記憶體係爲該微量瓶之一部分提供 在自動化製造環境中簡單可用、可靠、安全、保全且不貴 之試劑分配方法。 GMV004.1 本發明之此態樣提供一種用於寡核苷酸 分配設備之寡核苷酸微量瓶,該微量瓶包含: 容器,其係用於容納一定體積之試劑; 積體電路,其具有數位記憶體以儲存關於該寡核苷酸 特徵規格之寡核苷酸資料:及The digital memory system is used to store the information needed to functionalize the device in an automated manufacturing environment. The information stored in the memory includes the reagent specification data written into the body by the department of the automated manufacturing environment. This information is read from the memory and is utilized as needed by other parts of the automated manufacturing environment. The digital memory system provides a simple, reliable, safe, secure, and inexpensive reagent dispensing method for one of the micro vials in an automated manufacturing environment. GMV004.1 This aspect of the invention provides an oligonucleotide microbottle for an oligonucleotide dispensing device, the microbottle comprising: a container for containing a volume of reagent; an integrated circuit having Digital memory to store oligonucleotide information about the identity of the oligonucleotide: and
電接觸件,其係用於連接該試劑分配設備中之控制處 理器以提供資料至該控制處理器以供下載至有該寡核苷酸 供應之裝置。 GMV004.2 較佳地,該微量瓶亦具有液滴產生器以 用於自該容器射出寡核苷酸液滴。 GMV004.3 較佳地,該容器容納介於282微升至 400微升之試劑。 GMV004.4 較佳地,該液滴產生器係經組構以射出 體積介於50皮升至150皮升之液滴。 GMV004.5 較佳地,該液滴產生器具有壓電致動器 -84- 201209402 GMV004.6 較佳地,該識別資料係區別該微量瓶與 所有其他微量瓶之獨特識別資料。 GMV004.7 較佳地,該資料係經加密。An electrical contact is provided for connection to a control processor in the reagent dispensing device to provide information to the control processor for download to a device having the oligonucleotide supply. GMV004.2 Preferably, the micro vial also has a droplet generator for ejecting oligonucleotide droplets from the container. GMV004.3 Preferably, the container holds between 282 microliters and 400 microliters of reagent. GMV004.4 Preferably, the droplet generator is configured to emit droplets having a volume between 50 picoliters and 150 picoliters. GMV004.5 Preferably, the droplet generator has a piezoelectric actuator -84 - 201209402 GMV004.6 Preferably, the identification data distinguishes the unique identification data of the micro vial from all other micro vials. GMV004.7 Preferably, the data is encrypted.
該具有非揮發性數位記憶體之寡核苷酸微量瓶係用來 接受試劑、儲存試劑,並在數位控制下利用液滴產生器分 配試劑。該液滴產生器係爲該微量瓶之一部分提供自備且 體積及位置精準之寡核苷酸分配技術,簡化利用該微量瓶 之自動化製造環境之複雜性、增加利用該微量瓶之自動化 製造環境之可靠性及減少利用該微量瓶之自動化製造環境 之成本。 該數位記憶體係用於儲存在自動化製造環境中功能化 該裝置期間所需之資訊。儲存於該記憶體中之資訊包括由 自動化製造環境之部門寫入該記憶體中之寡核苷酸規格資 料。此資訊自該記憶體被讀取且如該自動化製造環境之其 φ 他部門所需之利用。該數位記憶體係爲該微量瓶之一部分 提供在自動化製造環境中簡單可用、可靠、安全、保全且 不貴之試劑分配方法。 GRD00 1.1 本發明之此態樣提供一種用於裝載試劑 至微流體裝置之試劑分配設備,該微流體裝置具有關於裝 載於該微流體裝置之試劑的資料之數位記憶體,該試劑分 配設備包含: 多個試劑瓶’每個該瓶皆具有積體電路及液滴分配器 ,該積體電路具有儲存關於該瓶中之試劑之資料的記憶體 -85- 201209402 安裝表面,其係用於可拆卸地安裝該微流體裝置以供 該微流體裝置相對於該瓶之移動;及 控制處理器,其係用於操作控制該瓶及該安裝表面; 其中 該控制處理器係經組構以活化該經選擇之瓶的液滴分 配器'移動該瓶以與該微流體裝置配準及自該積體電路下 載資料至該微流體裝置之數位記憶體。 GRD001.2 較佳地,該試劑分配設備亦具有照相機 以光學回饋由該控制處理器選擇之瓶與該微流體裝置之間 的配準。 GRD00 1.3 較佳地,該瓶係用於容納介於282毫升 至400毫升之微量瓶。 GRD001.4 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器及該微流體裝置之數位記憶體。 GRD001.5 較佳地,各該微量瓶具有電接觸件以接 收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GRD001.6 較佳地,該試劑分配設配亦具有架,其 中該等微量瓶係可拆卸地安裝於該架上以供機電控制該等 微量瓶。 GRD001 . 7The oligonucleotide microbottle with non-volatile digital memory is used to receive reagents, store reagents, and dispense reagents using a droplet generator under digital control. The droplet generator provides a self-contained, volumetric and positionally accurate oligonucleotide dispensing technique for one part of the micro-bottle, simplifies the complexity of the automated manufacturing environment in which the micro-bottle is utilized, and increases the automated manufacturing environment in which the micro-bottle is utilized. Reliability and reduced cost of an automated manufacturing environment that utilizes the micro vials. The digital memory system is used to store the information needed to functionalize the device in an automated manufacturing environment. The information stored in the memory includes the oligonucleotide specifications written into the memory by the department of the automated manufacturing environment. This information is read from the memory and is utilized as required by the department of the automated manufacturing environment. The digital memory system provides a simple, reliable, safe, secure, and inexpensive reagent dispensing method for one of the micro vials in an automated manufacturing environment. GRD00 1.1 This aspect of the invention provides a reagent dispensing device for loading a reagent to a microfluidic device having digital memory for data of reagents loaded in the microfluidic device, the reagent dispensing device comprising: A plurality of reagent bottles each having an integrated circuit and a droplet dispenser having a memory for storing information about the reagents in the bottle - 85 - 201209402 mounting surface for detachable Installing the microfluidic device for movement of the microfluidic device relative to the bottle; and controlling a processor for operating the bottle and the mounting surface; wherein the control processor is configured to activate the The droplet dispenser of the selected bottle moves the bottle to register with the microfluidic device and download data from the integrated circuit to the digital memory of the microfluidic device. GRD 001.2 Preferably, the reagent dispensing device also has a camera to optically feedback the registration between the bottle selected by the control processor and the microfluidic device. GRD00 1.3 Preferably, the bottle is for holding a micro vial of between 282 ml and 400 ml. GRD001.4 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor and the digital memory of the microfluidic device. GRD001.5 Preferably, each of the micro vials has electrical contacts for receiving a firing pulse for the droplet dispenser and allowing the control processor to interrogate the integrated circuit. GRD 01.6 Preferably, the reagent dispensing device also has a rack in which the micro vials are removably mounted for electromechanical control of the micro vials. GRD001 . 7
個正交軸移動之平台,該架平行延伸於該正交軸之一。 -86- 201209402 GRD001.8 較佳地’該微流體裝置係晶片上實驗室 (LOC)裝置。 GRD001.9 較佳地’該液滴分配器具有壓電致動器 GRD001.10 較佳地’該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。A platform on which the orthogonal axes move, the frame extending parallel to one of the orthogonal axes. -86- 201209402 GRD001.8 Preferably, the microfluidic device is a laboratory on wafer (LOC) device. GRD001.9 Preferably the droplet dispenser has a piezoelectric actuator GRD001.10. Preferably, the droplet dispenser is configured to emit droplets having a volume between 50 picoliters and 150 picoliters.
GRD001.il 較佳地,該試劑分配設備亦具有經組構 以用於施放密封裝置至該LOC裝置之設施,以封閉多個 其中已裝載試劑之貯器。 GRD001.12 較佳地,該LOC具有聚合酶連鎖反應 (PCR)部且該試劑清單具有下列一或多者: 水、聚合酶、引子、緩衝液、抗凝血劑、去氧核糖核 苷三磷酸(dNTP)、溶解試劑、連接酶、連接子及限制酶。 該試劑分配設備係具成本效益之自動化大量製造環境 之一部分,其被用來分配包含於試劑微量瓶中之試劑至該 φ 微流體裝置之試劑貯器。由該試劑分配設備所提供之資料 自動化包括自動化電腦控制之分配該試劑至該微流體裝置 之試劑貯器、檢查儲存於該微量瓶之記憶體中的試劑資料 以與必須被裝載至該微流體裝置之試劑的規格清單比對, 及儲存該試劑資料至該微流體裝置之記憶體。 該試劑分配設備提供自動化且體積及位置精準之試劑 分配技術,以簡化該自動化製造環境之複雜性、增加該自 動化製造環境之可靠性、增加該自動化製造環境之保全性 、增加該自動化製造環境之安全性及減少該自動化製造環 -87- 201209402 境之成本。 由該試劑分配設備所提供之資料自動化提供在該自動 化製造環境中自動化、安全、保全且不貴之資料監測及管 理技術。GRD001.il Preferably, the reagent dispensing apparatus also has a facility configured to apply a sealing device to the LOC device to enclose a plurality of reservoirs in which the reagents have been loaded. GRD001.12 Preferably, the LOC has a polymerase chain reaction (PCR) moiety and the reagent list has one or more of the following: water, polymerase, primer, buffer, anticoagulant, deoxyribonucleoside III Phosphoric acid (dNTP), lysing reagent, ligase, linker and restriction enzyme. The reagent dispensing device is part of a cost effective automated mass production environment that is used to dispense reagents contained in the reagent micro vials to the reagent reservoir of the φ microfluidic device. The data provided by the reagent dispensing device includes automated computer controlled dispensing of the reagent to the reagent reservoir of the microfluidic device, inspection of reagent data stored in the memory of the micro vial, and loading to the microfluidic The specification list of the reagents of the device is aligned, and the reagent data is stored to the memory of the microfluidic device. The reagent dispensing device provides automated and volumetric and positionally accurate reagent dispensing techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, increase the security of the automated manufacturing environment, and increase the automated manufacturing environment. Safety and reduce the cost of this automated manufacturing cycle -87- 201209402. The data provided by the reagent dispensing device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment.
GRD002.1 本發明之此態樣提供一種用於裝載試劑 至微流體裝置之試劑分配設備,該微流體裝置具有關於裝 載於該微流體裝置之試劑的資料之數位記憶體,該試劑分 配設備包含: 多個試劑瓶,每個該瓶皆具有積體電路及液滴分配器 ,該積體電路具有儲存關於該瓶中之試劑之資料的記憶體 安裝表面,其係用於可拆卸地安裝該微流體裝置以供 該微流體裝置相對於該瓶之移動;及 控制處理器,其係用於操作控制該瓶及該安裝表面; 其中GRD002.1 This aspect of the invention provides a reagent dispensing device for loading a reagent to a microfluidic device, the microfluidic device having digital memory for data of reagents loaded in the microfluidic device, the reagent dispensing device comprising : a plurality of reagent bottles each having an integrated circuit and a droplet dispenser having a memory mounting surface for storing information about reagents in the bottle for detachably mounting the a microfluidic device for moving the microfluidic device relative to the bottle; and a control processor for operating the bottle and the mounting surface;
該控制處理器係經組構以自動化詢答各該積體電路以 收集及儲存關於各該瓶中之試劑之資料。 GRD002.2 較佳地,該控制處理器係經組構以自動 化活化該經選擇之瓶的液滴分配器、移動該瓶i以與該微流 體裝置配準及自該積體電路下載資訊至該微流體裝置之數 位記憶體。 GRD002.3 較佳地,該試劑分配設備亦具有照相機 以光學回饋由該控制處理器選擇之瓶與該微流體裝置之間 的配準。 -88- 201209402 GRD002.4 較佳地,該瓶係用於容納介於282毫升 至400毫升之微量瓶。 GRD002.5 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器及該微流體裝置之數位記億體。 GRD002.6 較佳地,各該微量瓶具有電接觸件以接The control processor is configured to automatically interrogate each of the integrated circuits to collect and store information about the reagents in each of the bottles. GRD002.2 Preferably, the control processor is configured to automatically activate a droplet dispenser of the selected bottle, move the bottle i to register with the microfluidic device, and download information from the integrated circuit to The digital memory of the microfluidic device. GRD002.3 Preferably, the reagent dispensing device also has a camera to optically feedback the registration between the bottle selected by the control processor and the microfluidic device. -88- 201209402 GRD002.4 Preferably, the bottle is for containing a micro vial of between 282 ml and 400 ml. GRD002.5 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor and the digital device of the microfluidic device . GRD002.6 Preferably, each of the micro vials has electrical contacts for receiving
收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GRD002.7 較佳地,該試劑分配設備亦具有架,其 中該等微量瓶係可拆卸地安裝於該架上以供機電控制該等 微量瓶。 GRD002.8 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GRD002.9 較佳地,該微流體裝置係晶片上實驗室 (LOC)裝置。 GRD002.10 較佳地,該液滴分配器具有壓電致動器 GRD002.il 較佳地,該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。 GRD002.12 較佳地,該LOC具有聚合酶連鎖反應 (PCR)部且該試劑清單具有下列一或多者: 水、聚合酶、引子、緩衝液、抗凝血劑、去氧核糖核 苷三磷酸(dNTP)、溶解試劑、連接酶、連接子及限制酶。 該試劑分配設備係具成本效益之自動化大量製造環境 -89- 201209402 之一部分,其被用來分配包含於試劑微量瓶中之試劑至該 微流體裝置之試劑貯器。由該試劑分配設備所提供之資料 自動化包括自動化電腦控制之分配該試劑至該微流體裝置 之試劑貯器、檢査儲存於該微量瓶之記憶體中的試劑資料 以與必須被裝載至該微流體裝置之試劑的規格清單比對, 及儲存該試劑資料至該微流體裝置之記憶體和該試劑分配 設備之電腦記憶體。The start pulse for the drop dispenser is received and the control processor is allowed to interrogate the integrated circuit. GRD002.7 Preferably, the reagent dispensing apparatus also has a shelf in which the micro vials are removably mounted for electromechanical control of the micro vials. GRD002.8 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes that extend parallel to one of the orthogonal axes. GRD002.9 Preferably, the microfluidic device is a on-wafer laboratory (LOC) device. GRD 002.10 Preferably, the droplet dispenser has a piezoelectric actuator GRD002.il. Preferably, the droplet dispenser is configured to emit droplets having a volume between 50 picoliters and 150 picoliters. GRD002.12 Preferably, the LOC has a polymerase chain reaction (PCR) moiety and the reagent list has one or more of the following: water, polymerase, primer, buffer, anticoagulant, deoxyribonucleoside III Phosphoric acid (dNTP), lysing reagent, ligase, linker and restriction enzyme. The reagent dispensing device is part of a cost effective automated mass production environment -89-201209402, which is used to dispense reagents contained in a reagent microbottle to a reagent reservoir of the microfluidic device. The data provided by the reagent dispensing device includes automated computer controlled dispensing of the reagent to the reagent reservoir of the microfluidic device, inspection of reagent data stored in the memory of the micro vial, and loading to the microfluidic The specification list of reagents of the device is compared, and the reagent data is stored to the memory of the microfluidic device and the computer memory of the reagent dispensing device.
該試劑分配設備提供自動化且體積及位置精準之試劑 分配技術,以簡化該自動化製造環境之複雜性、增加該自 動化製造環境之可靠性、增加該自動化製造環境之保全性 、增加該自動化製造環境之安全性及減少該自動化製造環 境之成本。 由該試劑分配設備所提供之資料自動化提供在該自動 化製造環境中自動化、安全、保全且不貴之資料監測及管 理技術》The reagent dispensing device provides automated and volumetric and positionally accurate reagent dispensing techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, increase the security of the automated manufacturing environment, and increase the automated manufacturing environment. Safety and reduce the cost of this automated manufacturing environment. The data provided by the reagent dispensing device is automated to provide automated, safe, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment.
GRD003.1 本發明之此態樣提供一種用於裝載試劑 至固定陣列之微流體裝置之試劑分配設備,各該微流體裝 置具有關於裝載於該微流體裝置之試劑的資料之數位記憶 體,該試劑分配設備包含: 多個試劑瓶,每個該瓶皆具有積體電路及液滴分配器 ,該積體電路具有儲存關於該瓶中之試劑之資料的記憶體 安裝表面,其係用於可拆卸地安裝該微流體裝置之固 定陣列以供該微流體裝置之固定陣列相對於該瓶之移動; -90- 201209402 及 控制處理器,其係用於操作控制該瓶及該安裝表面; 其中 該控制處理器係經組構以活化該經選擇之瓶的液滴分 配器、移動該瓶以與該固定陣列內之一或多個微流體裝置 配準及自該積體電路下載資料至該一或多個微流體裝置之 數位記憶體。GRD003.1 This aspect of the invention provides a reagent dispensing device for loading reagents to a fixed array of microfluidic devices, each of the microfluidic devices having a digital memory of data relating to reagents loaded in the microfluidic device, The reagent dispensing device comprises: a plurality of reagent bottles, each of the bottles having an integrated circuit and a droplet dispenser, the integrated circuit having a memory mounting surface for storing information about the reagents in the bottle, which is used for Disassemblingly mounting a fixed array of the microfluidic device for movement of the fixed array of microfluidic devices relative to the bottle; -90-201209402 and a control processor for operating the bottle and the mounting surface; A control processor is configured to activate a droplet dispenser of the selected vial, move the vial to register with one or more microfluidic devices within the fixed array, and download data from the integrated circuit to the one Or digital memory of a plurality of microfluidic devices.
GRD003.2 較佳地,該固定陣列之微流體裝置係安 裝於可分離之PCB(印刷電路板)晶圓上之晶片上實驗室 (LOC)裝置之陣列。 GRD003.3 較佳地,該試劑分配設備亦具有照相機 以光學回饋由該控制處理器選擇之瓶與該LOC裝置之間 的配準。 GRD003.4 較佳地,該瓶係用於容納介於282毫升 至400毫升之微量瓶。 GRD003.5 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器及該LOC裝置之數位記憶體。 GRD003.6 較佳地,各該微量瓶具有電接觸件以接 收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GRD003.7 較佳地,該試劑分配設備亦具有架,其 中該等微量瓶係可拆卸地安裝於該架上以供機電控制該等 微量瓶。 -91 - 201209402 GRD003.8 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GRD 003.9 較佳地,該液滴分配器具有壓電致動器 GRD003.1 0 較佳地,該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。GRD003.2 Preferably, the fixed array of microfluidic devices are arrays of on-wafer laboratory (LOC) devices mounted on detachable PCB (printed circuit board) wafers. GRD003.3 Preferably, the reagent dispensing device also has a camera to optically feedback the registration between the bottle selected by the control processor and the LOC device. GRD003.4 Preferably, the bottle is for holding a micro vial of between 282 ml and 400 ml. GRD003.5 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor and the digital memory of the LOC device. GRD 003.6 Preferably, each of the micro vials has electrical contacts for receiving a firing pulse for the droplet dispenser and allowing the control processor to interrogate the integrated circuit. GRD003.7 Preferably, the reagent dispensing apparatus also has a shelf in which the micro vials are removably mounted for electromechanical control of the micro vials. Preferably, the mounting surface is configured to move along two orthogonal axes, the frame extending parallel to one of the orthogonal axes. GRD 003.9 Preferably, the droplet dispenser has a piezoelectric actuator GRD003.1. Preferably, the droplet dispenser is configured to emit droplets having a volume between 50 picoliters and 150 picoliters.
GRD 003.il 較佳地,該試劑分配設備亦具有經組構 以用於施放密封裝置至該LOC裝置之設施,以封閉多個 其中已裝載試劑之貯器。 GRD003.1 2 較佳地,該LOC具有聚合酶連鎖反應 (PCR)部且該試劑清單具有下列一或多者:水、聚合酶、 引子、緩衝液、抗凝血劑、去氧核糖核苷三磷酸(dNTP)、 溶解試劑、連接酶、連接子及限制酶。GRD 003.il Preferably, the reagent dispensing apparatus also has a facility configured to apply a sealing device to the LOC device to enclose a plurality of reservoirs in which the reagents have been loaded. GRD003.1 2 Preferably, the LOC has a polymerase chain reaction (PCR) moiety and the reagent list has one or more of the following: water, polymerase, primer, buffer, anticoagulant, deoxyribonucleoside Triphosphate (dNTP), lysing reagent, ligase, linker and restriction enzyme.
GRD 003.1 3 較佳地,該控制處理器係經組構以自動 化詢答各該積體電路以收集及儲存關於各該瓶中之試劑之 資料。 該試劑分配設備係具成本效益之自動化大量製造環境 之一部分,其被用來分配包含於試劑微量瓶中之試劑至該 安裝於PCB晶圓上之微流體裝置之陣列的試劑貯器。由該 試劑分配設備所提供之資料自動化包括自動化電腦控制之 分配該試劑至該微流體裝置之試劑貯器、檢查儲存於該微 量瓶之記憶體中的試劑資料以與必須被裝載至該微流體裝 置之試劑的規格清單比對,及儲存該試劑資料至該微流體 裝置之記憶體。 -92 - 201209402 該試劑分配設備提供自動化且體積及位置精準之試劑 分配技術,以簡化該自動化製造環境之複雜性、增加該自 動化製造環境之可靠性、增加該自動化製造環境之保全性 、增加該自動化製造環境之安全性及減少該自動化製造環 境之成本。 由該試劑分配設備所提供之資料自動化提供在該自動 化製造環境中自動化、安全、保全且不貴之資料監測及管GRD 003.1 3 Preferably, the control processor is configured to automatically query each of the integrated circuits to collect and store information about the reagents in each of the bottles. The reagent dispensing device is part of a cost effective automated mass production environment that is used to dispense reagents contained in a reagent microbottle to a reagent reservoir of the array of microfluidic devices mounted on the PCB wafer. The data provided by the reagent dispensing device includes automated computer controlled dispensing of the reagent to the reagent reservoir of the microfluidic device, inspection of reagent data stored in the memory of the micro vial, and loading to the microfluidic The specification list of reagents of the device is aligned, and the reagent data is stored to the memory of the microfluidic device. -92 - 201209402 This reagent dispensing device provides automated, volumetric and positionally accurate reagent dispensing techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, increase the security of the automated manufacturing environment, and increase the Automate the manufacturing environment and reduce the cost of the automated manufacturing environment. The data provided by the reagent dispensing device is automated to provide automated, safe, secure and inexpensive data monitoring and management in the automated manufacturing environment.
分配該試劑至該安裝於PCB晶圓上之微流體裝置之陣 列加速裝載過程並減少該裝載過程之成本,且藉由在安裝 該微流體裝置至該PCB晶圓上並將彼等焊接之後再裝載試 劑至該微流體裝置可增進該試劑之化學及物理完整性。 GRD004.1 本發明之此態樣提供一種用於裝載試劑 至矽晶圓之試劑分配設備,在該矽晶圓上建造晶片上實驗 室(LOC)裝置,各LOC裝置具有關於裝載於該LOC裝置 φ 之試劑的資料之數位記憶體,該試劑分配設備包含: .多個試劑瓶,每個該瓶皆具有積體電路及液滴分配器 ,該積體電路具有儲存關於該瓶中之試劑之資料的記憶體 » 安裝表面,其係用於可拆卸地安裝該矽晶圓以供該矽 晶圓相對於該瓶之移動;及 控制處理器,其係用於操作控制該瓶及該安裝表面; 其中 該控制處理器係經組構以活化該經選擇之瓶的液滴分 -93- 201209402 配器、移動該瓶以與該矽晶圓上之一或多個LOC裝置配 準及自該積體電路下載資料至該一或多個L0C裝置之數 位記憶體。 GRD004.2 較佳地,該矽晶圓係經部分切割以製備 細分成各自分開之L0C裝置。 GRD004.3 較佳地,該試劑分配設備亦具有照相機Distributing the reagent to the array of microfluidic devices mounted on the PCB wafer accelerates the loading process and reduces the cost of the loading process, and by mounting the microfluidic device onto the PCB wafer and soldering them Loading the reagent to the microfluidic device enhances the chemical and physical integrity of the reagent. GRD004.1 This aspect of the invention provides a reagent dispensing apparatus for loading reagents to a germanium wafer on which a wafer-on-lab (LOC) device is built, each LOC device having a loading on the LOC device a digital memory of the reagent of φ, the reagent dispensing device comprising: a plurality of reagent bottles each having an integrated circuit and a droplet dispenser, the integrated circuit having a reagent for storing the reagent in the bottle a memory of the data » mounting surface for detachably mounting the wafer for movement of the wafer relative to the bottle; and a control processor for operating the bottle and the mounting surface Wherein the control processor is configured to activate a droplet of the selected vial-93-201209402 adapter, move the vial to register with one or more LOC devices on the germanium wafer, and from the product The body circuit downloads data to the digital memory of the one or more L0C devices. GRD004.2 Preferably, the tantalum wafer is partially cut to prepare subdivided into separate LOC devices. GRD004.3 Preferably, the reagent dispensing device also has a camera
以光學回饋由該控制處理器選擇之瓶與該LOC裝置之間 的配準。 GRD004.4 較佳地,該瓶係用於容納介於2 82毫升 至400毫升之微量瓶。 GRD004.5 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器及該LOC裝置之數位記憶體。 GRD004.6 較佳地,各該微量瓶具有電接觸件以接The registration between the bottle selected by the control processor and the LOC device is optically fed back. GRD004.4 Preferably, the bottle is for holding a micro vial of between 2 82 ml and 400 ml. GRD004.5 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor and the digital memory of the LOC device. GRD004.6 Preferably, each of the micro vials has electrical contacts for receiving
收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GRD004.7 較佳地,該試劑分配設備亦具有架,其 中該等微量瓶係可拆卸地安裝於該架上以供機電控制該等 微量瓶。 GRD004.8 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GRD004.9 較佳地,該液滴分配器具有壓電致動器 GRD004.1 0 較佳地,該液滴分配器係經組構以射出 -94- 201209402 體積介於50皮升至150皮升之液滴。 GRD004.il 較佳地,該試劑分配設備亦具有經組構 以用於施放密封裝置至該LOC裝置之設施,以封閉多個 其中已裝載試劑之貯器。The start pulse for the drop dispenser is received and the control processor is allowed to interrogate the integrated circuit. GRD004.7 Preferably, the reagent dispensing apparatus also has a rack in which the micro vials are removably mounted for electromechanical control of the micro vials. GRD004.8 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes that extend parallel to one of the orthogonal axes. GRD004.9 Preferably, the droplet dispenser has a piezoelectric actuator GRD004.1. Preferably, the droplet dispenser is configured to emit -94-201209402. The volume is between 50 picoliters and 150 skins. Drop the droplets. GRD 004.il Preferably, the reagent dispensing apparatus also has a facility configured to apply a sealing device to the LOC device to enclose a plurality of reservoirs in which the reagents have been loaded.
GRD004.1 2 較佳地,該LOC具有聚合酶連鎖反應 (PCR)部且該試劑清單具有下列一或多者:水、聚合酶、 引子、緩衝液、抗凝血劑、去氧核糖核苷三磷酸(dNTP)、 溶解試劑、連接酶、連接子及限制酶。 GRD004.13 較佳地,該控制處理器係經組構以自動 化詢答各該積體電路以收集及儲存關於各該瓶中之試劑之 資料。 該試劑分配設備係具成本效益之自動化大量製造環境 之一部分,其被用來分配包含於試劑微量瓶中之試劑至部 分深度切割之矽晶圓上的該微流體裝置之試劑貯器。由該 試劑分配設備所提供之資料自動化包括自動化電腦控制之 φ 分配該試劑至該微流體裝置之試劑貯器、檢查儲存於該微 量瓶之記憶體中的試劑資料以與必須被裝載至該微流體裝 置之試劑的規格清單比對,及儲存該試劑資料至該微流體 裝置之記憶體。 該試劑分配設備提供自動化且體積及位置精準之試劑 分配技術,以簡化該自動化製造環境之複雜性、增加該自 動化製造環境之可靠性、增加該自動化製造環境之保全性 、增加該自動化製造環境之安全性及減少該自動化製造環 境之成本。 -95- 201209402 由該試劑分配設備所提供之資料自動化提供在該自動 化製造環境中自動化、安全、保全且不貴之資料監測及管 理技術。 分配該試劑至部分深度切割之矽晶圓上的微流體裝置 加速裝載過程並減少該裝載過程之成本。GRD004.1 2 Preferably, the LOC has a polymerase chain reaction (PCR) moiety and the reagent list has one or more of the following: water, polymerase, primer, buffer, anticoagulant, deoxyribonucleoside Triphosphate (dNTP), lysing reagent, ligase, linker and restriction enzyme. GRD004.13 Preferably, the control processor is configured to automatically query each of the integrated circuits to collect and store information about the reagents in each of the bottles. The reagent dispensing device is part of a cost effective automated mass production environment that is used to dispense reagents contained in the reagent microbottle to a reagent reservoir of the microfluidic device on a partially deep cut wafer. The data provided by the reagent dispensing device includes automated computer controlled φ dispensing the reagent to the reagent reservoir of the microfluidic device, checking reagent data stored in the memory of the micro vial, and having to be loaded to the micro The specification list of the reagents of the fluid device is aligned, and the reagent data is stored to the memory of the microfluidic device. The reagent dispensing device provides automated and volumetric and positionally accurate reagent dispensing techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, increase the security of the automated manufacturing environment, and increase the automated manufacturing environment. Safety and reduce the cost of this automated manufacturing environment. -95- 201209402 The information provided by this reagent dispensing facility automates the automated, secure, secure and inexpensive data monitoring and management techniques in this automated manufacturing environment. Distributing the reagent to the microfluidic device on the partially deep cut crucible wafer speeds up the loading process and reduces the cost of the loading process.
GPD001.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣寡核苷酸探針至表面上,該 探針具有與欲在生物樣品中識別之標的核酸序列互補之核 酸序列,該寡核苷酸點樣裝置包含: 支持基板; 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針;及 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通:其中GPD001.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like oligonucleotide probe to a surface having a target to be recognized in a biological sample a nucleic acid sequence complementary to a nucleic acid sequence, the oligonucleotide spotting device comprising: a support substrate; a reservoir array for accommodating the oligonucleotide probe suspended in the fluid; and an array of emitters, each of the emitters The device is configured to be in fluid communication with a corresponding one of the reservoirs:
該射出器係經組構以自該對應貯器射出含有該寡核苷 酸探針之液滴至該表面上。 GPD001.2 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴》 GPD001.3 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 GPD001.4 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 -96- 201209402 GPD001.5 較佳地, 小於1〇〇皮升之液滴。 GPD001.6 較佳地, 該射出器係經組構以射出體積 該射出器係經組構以射出體積 小於2 5皮升之液滴。 GPD001.7 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD001.8 較佳地,該射出器係經組構以射出體積The injector is configured to eject droplets containing the oligonucleotide probe from the corresponding reservoir onto the surface. Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from each nozzle respectively. GPD001.3 Preferably, the injector has a chamber and a plurality of actuations The chamber is for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to eject droplets of fluid from the chamber via the corresponding nozzle. GPD001.4 Preferably, the actuator is a thermal actuator, each actuator being configured to generate a vapor bubble in the fluid. -96- 201209402 GPD001.5 Preferably, the droplets are less than 1 〇〇 liter. GPD001.6 Preferably, the injector is configured to emit a volume of the emitter that is configured to emit droplets having a volume of less than 25 picoliters. GPD001.7 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD001.8 Preferably, the injector is configured to emit volume
介於0.1皮升至1.6皮升之液滴。 GPD001.9 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD001.10 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPD001.il 較佳地,該寡核苷酸點樣裝置亦具有 CMOS電路以用於提供驅動脈衝給該致動器,該CMOS電 路具有銲墊以用於連接微處理控制器,該微處理控制器操 φ 作性控制該噴嘴與將被該寡核苷酸探針點樣之表面之間的 相對移動。 GPD001.12 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD001.13 較佳地,該支持基板具有貯器側及與該 貯器側相對之射出器側,其中該貯器陣列係於該貯器側形 成且該射出器陣列係於該射出器側形成。 GPD00 1 .1 4 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 -97- 201209402 GPD001.15 較佳地,該射出器陣列係經組構以高於 每平方毫米1個液滴之密度射出含有該寡核苷酸探針之液 滴至該表面上。 GPD00 1.16 較佳地,該射出器陣列係經組構以高於 每平方毫米8個液滴之密度射出含有該寡核苷酸探針之液 滴至該表面上。Droplets from 0.1 picoliter to 1.6 picoliters. GPD001.9 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD 001.10 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPD001.il preferably, the oligonucleotide spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor control The device controls the relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe. GPD001.12 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD001.13 Preferably, the support substrate has a reservoir side and an emitter side opposite the reservoir side, wherein the reservoir array is formed on the reservoir side and the emitter array is formed on the emitter side . GPD00 1 .1 4 Preferably, the CMOS circuit is interposed between the reservoir array and the emitter array. Preferably, the array of emitters is configured to eject droplets containing the oligonucleotide probe onto the surface at a density greater than one droplet per square millimeter. GPD00 1.16 Preferably, the array of emitters is configured to eject droplets containing the oligonucleotide probe onto the surface at a density greater than 8 droplets per square millimeter.
GPD00 1 . 1 7 較佳地,該射出器陣列係經組構以高於 每平方毫米60個液滴之密度射出含有該寡核苷酸探針之 液滴至該表面上。 GPD00 1 . 1 8 較佳地,該射出器陣列係經組構以介於 每平方毫米500個液滴至每平方毫米1500個液滴之密度 射出含有該寡核苷酸探針之液滴至該表面上。 GPD00 1 . 1 9 較佳地,該射出器陣列係經組構以每秒 高於100個液滴之速率射出含有該寡核苷酸探針之液滴至 該表面上。GPD 1.00 17.7 Preferably, the array of emitters is configured to eject droplets containing the oligonucleotide probe onto the surface at a density greater than 60 droplets per square millimeter. GPD00 1 . 1 8 Preferably, the emitter array is configured to emit droplets containing the oligonucleotide probe at a density of from 500 droplets per square millimeter to 1500 droplets per square millimeter to On the surface. GPD00 1.19 Preferably, the array of emitters is configured to eject droplets containing the oligonucleotide probe onto the surface at a rate of more than 100 droplets per second.
GPD00 1 .20 較佳地’該射出器陣列係經組構以每秒 高於1,400個液滴之速率射出含有該寡核苷酸探針之液滴 至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 -98- 201209402 酸規格、儲存該寡核苷酸規格於彼之數位記億體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 φ 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD003.1 本發明之此態樣提供一種點樣裝置,該 點樣裝置係用於無接觸地點樣寡核苷酸探針至晶片上實驗 室(LOC)裝置,該LOC裝置具有雜交室陣列以用於接受該 φ 寡核苷酸探針’該探針具有與欲在生物樣品中檢測之標的 核酸序列互補之核酸序列,且該雜交室陣列係經組構以容 納該生物樣品之預定分析所需之完整的寡核苷酸探針系列 ,該點樣裝置包含: 貯器陣列’其係用於容納該懸浮於流體中之寡核苷酸 探針;及 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通,以使該射出器自該對應貯器射出 含有該寡核苷酸探針之液滴至該雜交室之一;其中 -99- 201209402 該貯器陣列係經組構以包含由該L O C裝置進行之預 定分析所需之完整的寡核苷酸探針系列。 GPD003.2 較佳地,該貯器陣列具有超過1 000個 貯器。 GPD003.3 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD003.4 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴》 GPD003.5 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD003.6 較佳地,該射出器係經組構以射出體積 小於1〇〇皮升之液滴。 GPD003.7 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD003.8 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD003.9 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD003.1 0 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD003.il 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 -100- 201209402 GPD003.1 2 較佳地,該點樣裝置亦具有CMOS電路 以用於提供驅動脈衝給該致動器,該CMOS電路具有銲墊 以用於連接微處理控制器,該微處理控制器操作性控制該 噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移動。 GPD003.1 3 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。GPD00 1.20 Preferably, the emitter array is configured to eject droplets containing the oligonucleotide probe onto the surface at a rate of more than 1,400 droplets per second. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted to receive the oligonucleoside stored in the oligonucleotide reservoir - 98- 201209402 Acid specification, storage of the oligonucleotide specification in the digits of the digits, and delivery of the oligonucleotide specifications to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediary φ fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD003.1 This aspect of the invention provides a spotting device for use in a contactless spot-like oligonucleotide probe to a wafer on-lab (LOC) device having an array of hybrid chambers For accepting the φ oligonucleotide probe 'the probe has a nucleic acid sequence complementary to the target nucleic acid sequence to be detected in the biological sample, and the hybrid chamber array is configured to accommodate the predetermined analysis of the biological sample A complete series of oligonucleotide probes, the spotting device comprising: a reservoir array for accommodating the oligonucleotide probe suspended in a fluid; and an array of emitters, each of the emitter systems Arranging to be in fluid communication with a corresponding one of the reservoirs, respectively, such that the emitter ejects droplets containing the oligonucleotide probe from the corresponding reservoir to one of the hybrid chambers; wherein -99 - 201209402 The reservoir array is organized to contain the complete series of oligonucleotide probes required for the predetermined analysis by the LOC device. GPD003.2 Preferably, the reservoir array has more than 1 000 reservoirs. GPD003.3 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD003.4 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to be The corresponding nozzle ejects droplets of fluid from the chamber. GPD003.5 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD003.6 Preferably, the injector is configured to emit droplets having a volume of less than 1 〇〇 picoliter. GPD003.7 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD003.8 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD003.9 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPD003.1 0 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD003.il Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. -100- 201209402 GPD003.1 2 Preferably, the spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor The controller operatively controls the relative movement of the nozzle to the surface to be spotted by the oligonucleotide probe. GPD003.1 3 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir.
GPD003.1 4 較佳地,該點樣裝置亦具有支持基板, 該支持基板具有貯器側及與該貯器側相對之射出器側,其 中該貯器陣列係於該貯器側形成且該射出器陣列係於該射 出器側形成。 GPD003.1 5 較佳地,該射出器陣列係經組構以高於 每平方毫米1個探針點樣之密度點樣該寡核苷酸探針至該 表面上。 GPD003.16 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該寡核苷酸探針至該 φ 表面上。 GPD003.1 7 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該寡核苷酸探針至 該表面上。 GPD003.1 8 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米15〇〇個探針點 樣之密度點樣該寡核苷酸探針至該表面上。 GPD003.1 9 較佳地,該射出器陣列係經組構以每秒 高於1〇〇個探針點樣之速率點樣該寡核苷酸探針至該表面 -101 - 201209402 上。 GPD003.20 較佳地,該射出器陣列係經組構以每秒 高於1,400個探針點樣之速率點樣該寡核苷酸探針至該表 面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之LOC裝置之雜交室中。由該寡核苷酸 點樣裝置所提供之資料自動化包括自動化電腦控制之分配 該寡核苷酸至該LOC裝置之雜交室中、接收儲存於寡核 苷酸貯器中之寡核苷酸規格、儲存該寡核苷酸規格於彼之 數位記憶體,及傳送該寡核苷酸規格以儲存於該將被點樣 之LOC裝置之記憶體中。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。在該寡核苷 酸點樣裝置上可用之眾多寡核苷酸貯器及射出器亦提供單 一步驟點樣各LOC裝置。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 -102- 201209402 及管理技術。 GPD004.1 本發明之此態樣提供一種生化沉積裝置 ,其係用於在表面上無接觸地沉積生化物質,該生化沉積 裝置包含: 貯器陣列,其係用於包含多種生化物質;及 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通;其中GPD003.1 4 Preferably, the spotting device also has a support substrate having a reservoir side and an emitter side opposite the reservoir side, wherein the reservoir array is formed on the reservoir side and the An array of emitters is formed on the side of the emitter. GPD003.1 5 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the surface at a density greater than 1 probe spot per square millimeter. GPD003.16 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the surface of the φ at a density greater than 8 probe spots per square millimeter. GPD003.1 7 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the surface at a density greater than 60 probe spots per square millimeter. GPD003.1 8 Preferably, the emitter array is configured to spot the oligonucleotide at a density of 500 probes per square millimeter to 15 probes per square millimeter. The needle is on the surface. GPD003.1 9 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the surface -101 - 201209402 at a rate of more than one probe spot per second. GPD003.20 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the surface at a rate of more than 1,400 probes per second. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide into the hybridization chamber of the LOC device to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the hybridization chamber of the LOC device to receive oligonucleotide specifications stored in the oligonucleotide reservoir The oligonucleotide is stored in the digital memory of the other, and the oligonucleotide is delivered for storage in the memory of the LOC device to be spotted. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. Numerous oligonucleotide reservoirs and emitters available on the oligonucleotide spotting device also provide a single step to spot each LOC device. The data provided by the oligonucleotide spotting device is automated to provide automated, safe, secure and inexpensive data monitoring in this automated manufacturing environment -102-201209402 and management techniques. GPD004.1 This aspect of the invention provides a biochemical deposition apparatus for depositing a biochemical substance on a surface without contact, the biochemical deposition apparatus comprising: a reservoir array for containing a plurality of biochemical substances; and an injection Arrays, each of the injectors being configured to be in fluid communication with a respective one of the reservoirs;
該射出器係經組構以自該對應貯器射出含有該生化物 質之液滴至該表面上。 GPD004.2 較佳地,該在貯器陣列中之生化物質係 寡核苷酸探針,該寡核苷酸探針具有與欲在生物樣品中檢 測之標的核酸序列互補之核酸序列,且該表面係晶片上實 驗室(LOC)裝置,該LOC裝置具有雜交室陣列以用於接受 該寡核苷酸探針。 GPD004.3 較佳地,該雜交室陣列係經組構以容納 φ 該生物樣品之預定分析所需之完整的寡核苷酸探針系列, 且該貯器陣列係經組構以包含由該LOC裝置進行之預定 分析所需之完整的寡核苷酸探針系列。 GPD004.4 較佳地,該貯器陣列具有超過1 000個 貯器。 GPD004.5 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD004.6 較佳地,該射出器具有室及多個致動器 ,該室用於包含具有由該對應貯器供應之懸浮寡核苷酸探 -103- 201209402 針之流體,該致動器之一分別對應各該噴嘴以使該致動器 經由該對應噴嘴射出來自該室之流體之液滴。 GPD004.7 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD004.8 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPD004.9 較佳地,該射出器係經組構以射出體積The injector is configured to eject droplets containing the biochemical substance from the corresponding reservoir onto the surface. GPD004.2 Preferably, the biochemical substance in the reservoir array is an oligonucleotide probe having a nucleic acid sequence complementary to a target nucleic acid sequence to be detected in a biological sample, and A surface-on-wafer laboratory (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe. GPD004.3 Preferably, the hybridization chamber array is configured to accommodate a complete series of oligonucleotide probes required for a predetermined analysis of the biological sample, and the reservoir array is configured to comprise The complete series of oligonucleotide probes required for the intended analysis by the LOC device. GPD004.4 Preferably, the reservoir array has more than 1 000 reservoirs. Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD004.6 Preferably, the injector has a chamber and a plurality of actuators for containing a fluid having a suspension oligonucleotide probe-103-201209402 needle supplied by the corresponding reservoir, the actuator One of the nozzles corresponds to each of the nozzles to cause the actuator to eject droplets of fluid from the chamber via the corresponding nozzles. GPD004.7 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD004.8 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. GPD004.9 Preferably, the injector is configured to emit volume
小於25皮升之液滴。 GPD004.1 0 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD004.il 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD004.1 2 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD004.1 3 較佳地,各該射出器具有多個自該貯器Droplets less than 25 picoliters. GPD004.1 0 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD004.il Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPD004.1 2 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD004.1 3 Preferably, each of the injectors has a plurality of reservoirs
延伸至該室之入口通道。Extend to the entrance passage of the room.
GPD004.1 4 較佳地,該生化沉積裝置亦具有CMOS 電路以用於提供驅動脈衝給該致動器,該CMOS電路具有 銲墊以用於連接微處理控制器,該微處理控制器操作性控 制該噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移 動。 GPD004.1 5 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD004.1 6 較佳地,該生化沉積裝置亦具有支持基 -104- 201209402 板,該支持基板具有貯器側及與該貯器側相對之射出器側 ,其中該貯器陣列係於該貯器側形成且該射出器陣列係於 該射出器側形成。 GPD004.1 7 較佳地,該射出器陣列係經組構以高於 每平方毫米8個液滴之密度射出含有該生化物質之液滴至 該表面上。GPD004.1 4 Preferably, the biodeposition device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor controller operability The relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe is controlled. GPD004.1 5 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD004.1 6 Preferably, the biochemical deposition device also has a support substrate -104 - 201209402, the support substrate having a reservoir side and an emitter side opposite the reservoir side, wherein the reservoir array is attached to the reservoir The side of the device is formed and the array of emitters is formed on the side of the emitter. GPD004.1 7 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density greater than 8 droplets per square millimeter.
GPD004.1 8 較佳地,該射出器陣列係經組構以高於 每平方毫米60個液滴之密度射出含有該生化物質之液滴 至該表面上。 GPD004.1 9 較佳地,該射出器陣列係經組構以介於 每平方毫米500個液滴至每平方毫米1 500個液滴之密度 射出含有該生化物質之液滴至該表面上。 GPD004.20 較佳地,該射出器陣列係經組構以每秒 高於100個液滴之速率射出含有該生化物質之液滴至該表 面上。 該大量生產且不貴之生化沉積裝置係用來作爲具成本 效益之自動化大量製造環境中之一部分。生化物質係經裝 載於該裝置之生化貯器中,且該裝置藉由將該生化物質自 彼之生化貯器射出至將被沉積之表面上以將彼等沉積於表 面上。由該生化沉積裝置所提供之資料自動化包括自動化 電腦控制之分配該生化物質至該將被點樣之表面上、接收 儲存於生化物質貯器中之生化物質規格、儲存該生化物質 規格於彼之數位記憶體,及傳送該生化物質規格至該自動 化製造環境之部門。 -105- 201209402 該生化沉積裝置提供自動化、體積及位置精準、快速 且高密度之生化物質沉積技術,以簡化該自動化製造環境 之複雜性、增加該自動化製造環境之可靠性、增加該自動 化製造環境之保全性、增加該自動化製造環境之安全性及 減少該自動化製造環境之成本。該裝置亦可作爲中介流體 操作之機轉,該機轉係自巨觀級之體積及位置正確性轉移 流體至微觀級之體積及位置正確性所需。 由該生化物質沉積裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD005.1 本發明之此態樣提供一種微系統技術 (MST)裝置,其係用於無接觸地點樣寡核苷酸探針至表面 上,該探針具有與欲在生物樣品中識別之標的核酸序列互 補之核酸序列,該MST裝置包含: 單片基板’,其具有貯器側及與該貯器側相對之射出器 側; 貯器陣列,其係於該貯器側形成;及 射出器陣列,其係於該射出器側形成,各該射出器係 經組構以分別與該等貯器中之對應一者流體相通;其中 該射出器係經組構以自該對應貯器射出含有該寡核苷 酸探針之液滴至該表面上。 GPD005.2 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD005.3 較佳地,該射出器具有室及多個致動器 -106- 201209402 ’該室用於包含具有由該對應貯器供應之懸浮寡核苷酸探 針之流體,該致動器之一分別對應各該噴嘴以使該致動器 經由該對應噴嘴射出來自該室之流體之液滴。 GPD005.4 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD005.5 較佳地,該射出器係經組構以射出體積 小於1 〇 〇皮升之液滴。GPD004.1 8 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density greater than 60 droplets per square millimeter. GPD004.1 9 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density of from 500 droplets per square millimeter to 1,500 droplets per square millimeter. GPD 004.20 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a rate of more than 100 droplets per second. This mass-produced and inexpensive biochemical deposition unit is used as part of a cost-effective automated mass production environment. The biochemical material is loaded into the bioreactor of the device and the device is deposited on the surface by depositing the biochemical material from the biochemical reservoir onto the surface to be deposited. The data provided by the biochemical deposition device includes automatic computer controlled distribution of the biochemical substance to the surface to be spotted, receiving biochemical material specifications stored in the biochemical material reservoir, and storing the biochemical material specifications in the Digital memory, and the department that delivers the biochemical specifications to the automated manufacturing environment. -105- 201209402 This biochemical deposition device provides automated, volumetric and positional, fast and high-density biochemical deposition technology to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the automated manufacturing environment. The preservation, the safety of the automated manufacturing environment and the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the fluid from the macroscopic level to the volume and positional correctness of the microscopic level. The data provided by the biochemical deposition device provides automation, security, preservation and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD005.1 This aspect of the invention provides a microsystem technology (MST) device for use on a contactless spot-like oligonucleotide probe to a surface having a target to be recognized in a biological sample a nucleic acid sequence complementary to a nucleic acid sequence, the MST apparatus comprising: a monolithic substrate having a reservoir side and an emitter side opposite the reservoir side; a reservoir array formed on the reservoir side; and an emitter An array formed on the side of the emitter, each of the injectors being configured to be in fluid communication with a respective one of the reservoirs; wherein the injector is configured to be ejected from the corresponding reservoir The droplets of the oligonucleotide probe are onto the surface. GPD 005.2 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD005.3 Preferably, the injector has a chamber and a plurality of actuators -106 - 201209402 'the chamber is for containing a fluid having a suspension oligonucleotide probe supplied by the corresponding reservoir, the actuator One of the nozzles corresponds to each of the nozzles to cause the actuator to eject droplets of fluid from the chamber via the corresponding nozzles. GPD005.4 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD005.5 Preferably, the injector is configured to emit droplets having a volume of less than 1 〇 〇 liter.
GPD005.6 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD005.7 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD005.8 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD005.9 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD005.1 0 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPD005.il 較佳地,該MST裝置亦具有CMOS電 路以用於提供驅動脈衝給該致動器,該CMOS電路具有銲 墊以用於連接微處理控制器,該微處理控制器操作性控制 該噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移動 GPD005. 1 2 較佳地,該CMOS電路具有記億體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 -107- 201209402 GPD005.13 較佳地,該表面係晶片上實驗室(LOC) 裝置,該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該雜交室陣列係經組構以容納該生物樣品之預定 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。 GPD005.1 4 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。 GPD005.1 5 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 GPD005.1 6 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該寡核苷酸至該表面 上。 GPDGG5_17 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該寡核苷酸至該表 面上。 GPD005 1 8 較佳地,該射出器陣列係經組構以介於 每平方毫米5 00個探針點樣至每平方毫米1 5 00.個探針點 樣之密度點樣該寡核苷酸至該表面上。 GPDG()5_19 較佳地,該射出器陣列係經組構以每秒 高於100個探針點樣之速率點樣該寡核苷酸至該表面上。 GPD005-2〇 較佳地,該射出器陣列係經組構以每秒 高於1,4〇〇個探針點樣之速率點樣該寡核苷酸至該表面上 -108- 201209402GPD005.6 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD005.7 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD005.8 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPD 005.9 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD005.1 0 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPD005.il preferably, the MST device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor controller operatively controlling the The relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe GPD005. 1 2 preferably, the CMOS circuit has a body for storage and storage of the oligonucleotide in the reservoir Needle related specifications. -107-201209402 GPD005.13 Preferably, the surface is a laboratory on-wafer (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe, the hybridization chamber array being organized A complete series of oligonucleotide probes required to accommodate the predetermined analysis of the biological sample, and the reservoir array is configured to contain the complete oligonucleotide probe required for the predetermined analysis by the LOC device Needle series. GPD005.1 4 Preferably, the reservoir array has more than one reservoir. GPD005.1 5 Preferably, the CMOS circuit is interposed between the array of registers and the array of emitters. GPD005.1 6 Preferably, the array of emitters is configured to spot the oligonucleotide onto the surface at a density greater than 8 probe spots per square millimeter. GPDGG5_17 Preferably, the array of emitters is configured to spot the oligonucleotide onto the surface at a density of more than 60 probe spots per square millimeter. GPD005 1 8 Preferably, the array of emitters is configured to spot the oligonucleotide at a density of 5,000 probes per square millimeter to a density of 1,500 probes per square millimeter. To the surface. GPDG() 5_19 Preferably, the array of emitters is organized to spot the oligonucleotide onto the surface at a rate of more than 100 probes per second. GPD005-2〇 Preferably, the array of emitters is configured to spot the oligonucleotide onto the surface at a rate of more than 1,4 probes per second. -108 - 201209402
該寡核苷酸點樣裝置係利用微系統技術(M S Τ)大量、 不貴地生產’且係用來作爲具成本效益之自動化大量製造 環境中之一部分。寡核苷酸係經裝載於該裝置之寡核苷酸 貯器,且該裝置將該寡核苷酸射出至將被點樣之表面上。 由該寡核苷酸點樣裝置所提供之資料自動化包括自動化電 腦控制之分配該寡核苷酸至該將被點樣之表面上、接收儲 存於寡核苷酸貯器中之寡核苷酸規格、儲存該寡核苷酸規 格於彼之數位記憶體,及傳送該寡核苷酸規格至該自動化 製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD006.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣寡核苷酸探針至表面上,該 探針具有與欲在生物樣品中識別之標的核酸序列互補之核 酸序列,該寡核苷酸點樣裝置包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 -109- 201209402 探針: 射出器陣列,其覆蓋該貯器陣列,各該射出器係經組 構以分別與該等貯器中之對應一者流體相通;其中 該射出器係經組構以自該對應貯器射出含有該寡核苷 酸探針之液滴至該表面上。The oligonucleotide spotting device utilizes microsystem technology (M S Τ) to produce a large amount, inexpensively and is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into an oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir The specification, storage of the oligonucleotide size in the digit memory, and delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD006.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like oligonucleotide probe to a surface having a target to be recognized in a biological sample A nucleic acid sequence complementary nucleic acid sequence, the oligonucleotide spotting device comprising: a reservoir array for containing the oligonucleotide suspended in a fluid - 109 - 201209402 probe: an emitter array covering the a reservoir array, each of the injectors being configured to be in fluid communication with a respective one of the reservoirs; wherein the injector is configured to emit the oligonucleotide probe from the corresponding reservoir Droplets onto the surface.
GPD006.2 較佳地,該寡核苷酸點樣裝置亦具有支 持基板,該支持基板具有貯器側及與該貯器側相對之射出 器側,其中該貯器陣列係於該貯器側形成且該射出器陣列 係於該射出器側形成。 GPD006.3 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD006.4 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。GPD006.2 Preferably, the oligonucleotide spotting device also has a support substrate having a reservoir side and an emitter side opposite the reservoir side, wherein the reservoir array is attached to the reservoir side Formed and the emitter array is formed on the emitter side. GPD006.3 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD006.4 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to be The corresponding nozzle emits droplets of fluid from the chamber.
GPD006.5 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD006.6 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPD006.7 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD006.8 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD006.9 較佳地,該射出器係經組構以射出體積 -110- 201209402 介於o.l皮升至1·6皮升之液滴。 GPD006.10 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD006.il 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。GPD006.5 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD006.6 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. GPD006.7 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD006.8 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD006.9 Preferably, the injector is configured to emit droplets of volume -110 - 201209402 between o.l and picoliter to 1.6 microliters. GPD 006.10 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD006.il Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber.
GPD006.1 2 較佳地,該寡核苷酸點樣裝置亦具有 CMOS電路以用於提供驅動脈衝給該致動器,該CMOS電 路具有銲墊以用於連接微處理控制器,該微處理控制器操 作性控制該噴嘴與將被該寡核苷酸探針點樣之表面之間的 相對移動。 GPD006.1 3 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD006.14 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 GPD006.1 5 較佳地,該表面係晶片上實驗室(LOC) φ 裝置’該L〇C裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該雜交室陣列係經組構以容納該生物樣品之預定 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。 GPD006.1 6 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。 GPD006.1 7 較佳地’該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 -111 - 201209402 GPD006.1 8 較佳地,該射出器陣列 每平方毫米60個探針點樣之密度點樣該 GPD006.1 9 較佳地,該射出器陣列保 每平方毫米500個探針點樣至每平方毫米 樣之密度點樣該探針至該表面上。 GPD006.20 較佳地,該CMOS電路仿 驅動脈衝以使該射出器陣列以每秒高於1 00 速度點樣該探針至該表面上。 該具有分層結構之大量生產且不貴之寡 置係用來作爲具成本效益之自動化大量製造 分。寡核苷酸係經裝載於該裝置之寡核苷酸 置將該寡核苷酸射出至將被點樣之表面上。 點樣裝置所提供之資料自動化包括自動化電 該寡核苷酸至該將被點樣之表面上、接收儲 貯器中之寡核苷酸規格、儲存該寡核苷酸規 記憶體,及傳送該寡核苷酸規格至該自動化 他部門。 該寡核苷酸點樣裝置提供自動化、體積 快速且高密度之寡核苷酸點樣技術,以簡化 環境之複雜性、增加該自動化製造環境之可 自動化製造環境之保全性、增加該自動化製 性及減少該自動化製造環境之成本。該裝置 流體操作之機轉,該機轉係自巨觀級之體積 〖經組構以高於 丨針至該表面上 丨經組構以介於 1 500個探針點 ;經組構以產生 個探針點樣之 核苷酸點樣裝 環境中之一部 貯器,且該裝 由該寡核苷酸 腦控制之分配 存於寡核苷酸 格於彼之數位 製造環境之其 及位置精準、 該自動化製造 靠性、增加該 造環境之安全 亦可作爲中介 及位置正確性 -112- 201209402 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD007.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣寡核苷酸探針至表面上,該 探針具有與欲在生物樣品中識別之標的核酸序列互補之核 φ 酸序列,該寡核苷酸點樣裝置包含: 支持基板; 在該支持基板一側之貯器陣列,該貯器係經組構以用 於包含懸浮於液體中之該寡核苷酸探針; 在該支持基板另一側之射出器陣列;及 多個在該貯器與該射出器之間流體相通之入口通道; 其中 該射出器係經組構以自該對應貯器射出含有該寡核苷 φ 酸探針之液滴至該表面上。 GPD007.2 較佳地,各該射出器係經組構以分別與 該等貯器中之對應一者流體相通。 GPD007.3 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD007.4 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 -113- 201209402 GPD007.5 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD007.6 較佳地,該射出器係經組構以射出體積 小於1〇〇皮升之液滴。 GPD007.7 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD007.8 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD007.9 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD007.10 較佳地,在各該射出器中之致動器係經 組構以個別致動。 - GPD007.il 較佳地,各該射出器係與該等貯器之一 經由超過一個入口通道流體相通。 GPD007.1 2 較佳地,該寡核苷酸點樣裝置亦具有 CMOS電路以用於提供驅動脈衝給該致動器,該CMOS電 路具有銲墊以用於連接微處理控制器,該微處理控制器操 作性控制該噴嘴與將被該寡核苷酸探針點樣之表面之間的 相對移動。 , GPD007.1 3 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD007.14 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 GPD007.1 5 較佳地,該射出器陣列係經組構以高於 -114- 201209402 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 GPD007.1 6 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該表面上 GPD007.1 7 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該探針至該表面上。GPD006.1 2 Preferably, the oligonucleotide spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor The controller operatively controls the relative movement of the nozzle to the surface to be spotted by the oligonucleotide probe. GPD006.1 3 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD006.14 Preferably, the CMOS circuit is interposed between the array of registers and the array of emitters. GPD006.1 5 Preferably, the surface-on-wafer laboratory (LOC) φ device 'the L〇C device has an array of hybridization chambers for accepting the oligonucleotide probe, the hybridization chamber array is organized A complete series of oligonucleotide probes required to accommodate the predetermined analysis of the biological sample, and the reservoir array is configured to contain the complete oligonucleotide probe required for the predetermined analysis by the LOC device Needle series. GPD006.1 6 Preferably, the reservoir array has more than one reservoir. GPD006.1 7 Preferably the emitter array is configured to spot the probe onto the surface at a density greater than 8 probe spots per square millimeter. -111 - 201209402 GPD006.1 8 Preferably, the emitter array has a density of 60 probe spots per square millimeter. The GPD006.1 9 preferably, the emitter array maintains 500 probes per square millimeter. The probe was spotted to a density per square millimeter to the surface. GPD006.20 Preferably, the CMOS circuit mimics a pulse to cause the array of emitters to spot the probe onto the surface at a rate of more than 100 per second. This mass-produced, inexpensive structure with a layered structure is used as a cost-effective automated mass production. The oligonucleotide is injected onto the surface to be spotted by the oligonucleotide loaded on the device. Automating the data provided by the spotting device includes automating the oligonucleotide to the surface to be spotted, receiving the oligonucleotide size in the reservoir, storing the oligonucleotide memory, and transmitting The oligonucleotide is sized to the automation department. The oligonucleotide spotting device provides an automated, fast and high density oligonucleotide spotting technique to simplify the complexity of the environment, increase the security of the automated manufacturing environment of the automated manufacturing environment, and increase the automation Sex and reduce the cost of this automated manufacturing environment. The device is operated by fluid operation, and the volume of the machine is transferred from the macroscopic level. The structure is higher than the 丨 needle to the surface of the 丨 组 以 以 以 以 ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; a probe spotted nucleotide spotting one of the reservoirs in the environment, and the allocation of the oligonucleotide is controlled by the oligonucleotide in the position of the digital manufacturing environment Accuracy, the automation of manufacturing and the safety of the environment can also be used as an intermediary and positional correctness -112- 201209402 required to transfer fluid to the microscopic volume and position correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD007.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like oligonucleotide probe to a surface having a target to be recognized in a biological sample a nucleic acid sequence complementary nuclear φ acid sequence, the oligonucleotide spotting device comprising: a support substrate; a reservoir array on a side of the support substrate, the reservoir being configured for containing the suspension in a liquid An oligonucleotide probe; an emitter array on the other side of the support substrate; and a plurality of inlet channels in fluid communication between the reservoir and the emitter; wherein the emitter is configured to correspond to The reservoir ejects droplets containing the oligonucleotide φ acid probe onto the surface. GPD007.2 Preferably, each of the injectors is configured to be in fluid communication with a respective one of the reservoirs. GPD 007.3 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD007.4 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to be The corresponding nozzle emits droplets of fluid from the chamber. - 113 - 201209402 GPD007.5 Preferably, the actuator is a thermal actuator, each actuator being configured to generate a vapor bubble in the fluid. GPD007.6 Preferably, the injector is configured to emit droplets having a volume of less than 1 〇〇 picoliter. GPD007.7 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD007.8 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD007.9 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPD 007.10 Preferably, the actuators in each of the injectors are configured to be individually actuated. - GPD007.il Preferably, each of the injectors is in fluid communication with one of the reservoirs via more than one inlet passage. GPD007.1 2 Preferably, the oligonucleotide spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor The controller operatively controls the relative movement of the nozzle to the surface to be spotted by the oligonucleotide probe. GPD007.1 3 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD 007.14 Preferably, the CMOS circuit is interposed between the array of registers and the array of emitters. GPD007.1 5 Preferably, the array of emitters is configured to spot the probe onto the surface at a density of 8 probe spots per square millimeter above -114 - 201209402. GPD007.1 6 Preferably, the emitter array is configured to spot the probe onto the surface at a density of more than 60 probe spots per square millimeter. Preferably, the emitter is The array was organized to spot the probe onto the surface at a density of 500 probes per square millimeter to 1,500 probe spots per square millimeter.
GPD007.1 8 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於100個探針點樣之 速度點樣該探針至該表面上》 GPD007.1 9 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。 GPD007.20 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。其係以流體 學在矽基板之雙側製造,以增加該裝置之整合程度,減少 該裝置之尺寸及最小化該裝置之成本。寡核苷酸係經裝載 於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸射出至 將被點樣之表面上。由該寡核苷酸點樣裝置所提供之資料 自動化包括自動化電腦控制之分配該寡核苷酸至該將被點 樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷酸規格 -115- 201209402 、儲存該寡核苷酸規格於彼之數位記憶體,及傳送該寡核 苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD008.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣探針至表面上,該探針具有 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, 該寡核苷酸點樣裝置包含: 支持基板: 射出器之陣列,各射出器具有致動器以用於射出含有 該寡核苷酸探針之液體之液滴; CMOS電路’以用於提供驅動脈衝給各該液滴射出致 動器以射出液滴;及 銲墊,其係用於電連接該CMOS電路與外部微處理控 制器以操作控制ί該射出器陣列。 GPD00 8.2 較佳地,該CMOS電路具有儲存識別資 -116- 201209402 料之數位記億體以供外部微處理控制器識別該裝置。 GPD008.3 較佳地,該寡核苷酸點樣裝置亦具有貯 器陣列,其係用於包含懸浮於液體中之該寡核苷酸探針, 其中該支持基板具有貯器側及與該貯器側相對之射出器側 ,該貯器陣列係於該貯器側形成,該射出器陣列係於該射 出器側形成,各該射出器係經組構以用於分別與該等探針 貯器中之對應一者流體相通。GPD007.1 8 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second" GPD007. Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second. GPD 007.20 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. It is made of fluid on both sides of the tantalum substrate to increase the degree of integration of the device, reduce the size of the device and minimize the cost of the device. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir Specification - 115 - 201209402. Store the oligonucleotide in its digital memory and transfer the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD008.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like probe to a surface having a complementary nucleic acid sequence to be recognized in a biological sample. Nucleic acid sequence, the oligonucleotide spotting device comprises: a support substrate: an array of emitters, each of the emitters having an actuator for emitting droplets of liquid containing the oligonucleotide probe; A drive pulse is provided to each of the droplets to eject an actuator to eject a droplet; and a pad is used to electrically connect the CMOS circuit to an external microprocessor controller to operate the illuminator array. GPD00 8.2 Preferably, the CMOS circuit has a digital memory for storing the identification information - 116 - 201209402 for the external microprocessor controller to identify the device. GPD008.3 Preferably, the oligonucleotide spotting device also has a reservoir array for containing the oligonucleotide probe suspended in a liquid, wherein the support substrate has a reservoir side and a reservoir side formed opposite the emitter side, the reservoir array being formed on the reservoir side, the emitter array being formed on the emitter side, each of the emitters being configured for use with the probes A corresponding one of the reservoirs is in fluid communication.
GPD008.4 較佳地,該數位記憶體儲存該寡核苷酸 探針之規格資料。 GPD008.5 較佳地,各該射出器具有多個致動器及 分別與各該液滴射出致動器相關之對應多個噴嘴,以使該 致動器中之一者之致動經由與該致動器相關之該噴嘴射出 液滴。 GPD008.6 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD008.7 較佳地,該射出器係經組構以射出體積 小於1 〇 〇皮升之液滴。 GPD008.8 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD008.9 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD008. 1 0 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD008.il 較佳地,在該射出器之一者中之致動器 -117- 201209402 係經組構以個別致動。 GPD008.1 2 較佳地,各該射出器具有室及 通道,該室包含該液體以用於自該噴嘴射出,該 通道自該室延伸至對應該射出器之貯器。 GPD008.1 3 較佳地,在各該射出器中之致 組構以個別致動。 GPD008.14 較佳地,該CMOS電路係介於 列及該射出器陣列之間。 GPD008.1 5 較佳地,該表面係晶片上實顆 裝置,該LOC裝置具有雜交室陣列以用於接受 酸探針,該雜交室陣列係經組構以容納該生物樣 分析所需之完整的寡核苷酸探針系列,且該貯器 組構以包含由該LOC裝置進行之預定分析所需 寡核苷酸探針系列。 GPD008.1 6 較佳地,該貯器陣列具有超過 貯器。 GPD008.1 7 較佳地,該射出器陣列係經組 每平方毫米8個探針點樣之密度點樣該探針至該; GPD008.1 8 較佳地,該射出器陣列係經組 每平方毫米60個探針點樣之密度點樣該探針至 〇 GPD008.1 9 較佳地,該射出器陣列係經組 每平方毫米500個探針點樣至每平方毫米1500 樣之密度點樣該探針至該表面上。 多個入口 多個入口 動器係經 該貯器陣 ί 室(LOC) 該寡核苷 品之預定 陣列係經 之完整的 1 000 個 構以商於 复面上。 構以高於 該表面上 構以介於 個探針點GPD008.4 Preferably, the digital memory stores specifications of the oligonucleotide probe. GPD008.5 Preferably, each of the injectors has a plurality of actuators and corresponding plurality of nozzles associated with each of the droplet ejection actuators to cause actuation of one of the actuators via The nozzle associated with the actuator emits a droplet. GPD008.6 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD008.7 Preferably, the injector is configured to emit droplets having a volume of less than 1 〇 〇 liter. GPD008.8 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD008.9 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD 008. 10 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliter to 1.6 picoliters. GPD008.il Preferably, the actuator -117-201209402 in one of the injectors is organized to be individually actuated. GPD008.1 2 Preferably, each of the injectors has a chamber and a passage containing the liquid for ejecting from the nozzle, the passage extending from the chamber to a reservoir corresponding to the injector. GPD008.1 3 Preferably, the configurations in each of the injectors are individually actuated. GPD 008.14 Preferably, the CMOS circuit is between the column and the emitter array. GPD008.1 5 Preferably, the surface is a real device on a wafer having an array of hybridization chambers for receiving an acid probe, the array of hybridization chambers being organized to accommodate the integrity required for the biological sample analysis A series of oligonucleotide probes, and the reservoir is configured to contain a series of oligonucleotide probes required for predetermined analysis by the LOC device. GPD008.1 6 Preferably, the reservoir array has more than a reservoir. GPD008.1 7 Preferably, the array of emitters is spotted by the density of 8 probe spots per square millimeter; GPD008.1 8 Preferably, the array of emitters is per group Square millimeters 60 probe spotting density spotting the probe to 〇GPD008.1 9 Preferably, the emitter array is spotted by a group of 500 probes per square millimeter to a density point of 1500 per square millimeter The probe is applied to the surface. Multiple inlets Multiple inlets are passed through the reservoir array (LOC). The predetermined array of oligonucleosides is composed of a complete set of 1 000 structures. Constructed above the surface to have a probe point
-118- 201209402 GPD008.20 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於I 00個探針點樣之 速度點樣該探針至該表面上。-118-201209402 GPD008.20 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe to the surface at a rate of more than 10,000 probes per second. on.
該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 酸規格、儲存該寡核苷酸規格於彼之數位記憶體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。該點樣 裝置在外部電腦控制下實施這些功能。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需》 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD009.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣探針至表面上,該探針具有 -119- 201209402 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, 該寡核苷酸點樣裝置包含: 支持基板; 射出器之陣列,各射出器具有致動器以用於射出含有 該寡核苷酸探針之液體之液滴;及 CMOS電路,以用於提供驅動脈衝給各該液滴射出致 動器以射出液滴:其中 該CMOS電路具有數位記憶體以用於儲存與該裝置相 關之資料。 GPD009.2 較佳地,該CMOS電路具有用於電連接 之銲墊及用於操作控制該射出器陣列之外部微處理控制器 〇 GPD009.3 較佳地,該資料包括識別資料以供外部 微處理控制器識別該裝置。 GPD009.4 較佳地,該寡核苷酸點樣裝置亦具有貯 器陣列,其係用於包含懸浮於液體中之該寡核苷酸探針, 其中該支持基板具有貯器側及與該貯器側相對之射出器側 ,該貯器陣列係於該貯器側形成,該射出器陣列係於該射 出器側形成,各該射出器係經組構以用於分別與該等探針 貯器中之對應一者流體相通。 GPD009.5 較佳地,該數位記憶體儲存該寡核苷酸 探針之規格資料。 GPD009.6 較佳地,各該射出器具有多個致動器及 分別與各該液滴射出致動器相關之對應多個噴嘴,以使該 -120- 201209402 致動器中之一者之致動經由與該致動器相關之該噴嘴射出 液滴。 GPD009.7 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD009.8 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPD009.9 較佳地,該射出器係經組構以射出體積This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir The specification, storage of the oligonucleotide size in the digit memory, and delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The spotting device performs these functions under the control of an external computer. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required to transfer the fluid from the macroscopic level to the correct volume and positional correctness of the fluid to the microscopic level. The information provided is automated to provide automated, secure, secure and inexpensive data monitoring and management techniques in this automated manufacturing environment. GPD009.1 This aspect of the invention provides an oligonucleotide spotting device for use on a contactless spot-like probe to a surface having -119-201209402 and a target to be identified in a biological sample a nucleic acid sequence complementary to a nucleic acid sequence, the oligonucleotide spotting device comprising: a support substrate; an array of emitters each having an actuator for ejecting a droplet of a liquid containing the oligonucleotide probe; A CMOS circuit for providing a drive pulse to each of the droplets to eject an actuator to eject a droplet: wherein the CMOS circuit has digital memory for storing data associated with the device. GPD009.2 Preferably, the CMOS circuit has a pad for electrical connection and an external microprocessor controller for operating the array of emitters 〇GPD009.3. Preferably, the data includes identification data for external micro The processing controller identifies the device. GPD009.4 Preferably, the oligonucleotide spotting device also has a reservoir array for containing the oligonucleotide probe suspended in a liquid, wherein the support substrate has a reservoir side and a reservoir side formed opposite the emitter side, the reservoir array being formed on the reservoir side, the emitter array being formed on the emitter side, each of the emitters being configured for use with the probes A corresponding one of the reservoirs is in fluid communication. GPD009.5 Preferably, the digital memory stores specifications of the oligonucleotide probe. GPD009.6 Preferably, each of the injectors has a plurality of actuators and corresponding plurality of nozzles associated with each of the droplet ejection actuators to enable one of the -120-201209402 actuators Actuation ejects droplets via the nozzle associated with the actuator. GPD009.7 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD009.8 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. GPD009.9 Preferably, the injector is configured to emit volume
小於25皮升之液滴。 GPD009.1 0 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴》 GPD009.il 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD009.1 2 較佳地,在該射出器之一者中之致動器 係經組構以個別致動。 GPD009.1 3 較佳地,各該射出器具有室及多個入口 φ 通道,該室包含該液體以用於自該噴嘴射出’該多個入口 通道自該室延伸至對應該射出器之貯器。 GPD009.1 4 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD009.1 5 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 GPD009.16 較佳地,該表面係晶片上實驗室(LOC) 裝置,該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該雜交室陣列係經組構以容納該生物樣品之預定 -121 - 201209402 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。 GPD009.1 7 較佳地,該貯器陣列具有超過1 000個 貯器。 GPD009.1 8 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該表面上 〇 GPD009.1 9 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該探針至該表面上。 GPD009.20 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 酸規格、儲存該寡核苷酸規格於彼之數位記憶體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 -122- 201209402 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測Droplets less than 25 picoliters. GPD009.1 0 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD009.il Preferably, the injector is configured to have an ejection volume of from 0.1 picoliter to 1.6. The droplets of the skin rise. GPD009.1 2 Preferably, the actuators in one of the injectors are organized to be individually actuated. GPD009.1 3 Preferably, each of the injectors has a chamber and a plurality of inlet φ channels, the chamber containing the liquid for ejecting from the nozzles. The plurality of inlet channels extending from the chamber to a reservoir corresponding to the injector Device. GPD009.1 4 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD009.1 5 Preferably, the CMOS circuit is interposed between the array of registers and the array of emitters. GPD009.16 Preferably, the surface is a laboratory on wafer (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe, the array of hybridization chambers being organized to accommodate the organism Sample Preparation -121 - 201209402 The complete series of oligonucleotide probes required for analysis, and the reservoir array is organized to contain the complete oligonucleotide probe required for the intended analysis by the LOC device Needle series. GPD009.1 7 Preferably, the reservoir array has more than 1 000 reservoirs. GPD009.1 8 Preferably, the array of emitters is configured to spot the probe onto the surface at a density greater than 60 probes per square millimeter. 〇GPD009.1 9 preferably, the emitter The array was organized to spot the probe onto the surface at a density of 500 probes per square millimeter to a density of 1,500 probes per square millimeter. GPD 009.20 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir The specification, storage of the oligonucleotide size in the digit memory, and delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment and increase the reliability of the automated manufacturing environment. Sexuality, increase the security of the automated manufacturing environment, increase the security of the automated manufacturing environment, and reduce the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. The data provided by the oligonucleotide spotting device is automated to provide automated, safe, secure and inexpensive data monitoring in the automated manufacturing environment.
及管理技術。 GPD010.1 本發明之此態樣提供一種點樣裝置,其 係用於無接觸地點樣寡核苷酸探針至表面上,該探針具有 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, 該點樣裝置包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針; 與該貯器流體相通之射出器陣列,各射出器具有致動 φ 器以用於射出含有該寡核苷酸探針之液體之液滴;及 CMOS電路,以用於提供驅動脈衝給各該液滴射出致 動器以射出液滴.;其中 該CMOS電路具有數位記憶體。 GPD010.2 較佳地,該CMOS電路具有用於電連接 之銲墊及用於操作控制該射出器陣列之外部微處理控制器 GPD010.3 較佳地,該數位記憶體儲存識別資料以 供外部微處理控制器識別該裝置。 -123- 201209402 GPD01 0.4 較佳地,該寡核苷酸點樣裝置亦具有支 持基板,該支持基板具有貯器側及與該貯器側相對之射出 器側,該貯器陣列係於該貯器側形成,該射出器陣列係於 該射出器側形成,各該射出器係經組構以用於分別與該等 探針貯器中之對應一者流體相通。 GPD010.5 較佳地,該數位記憶體儲存該寡核苷酸 探針之規格資料。 GPD010.6 較佳地,各該射出器具有多個致動器及 分別與各該液滴射出致動器相關之對應多個噴嘴,以使該 致動器中之一者之致動經由與該致動器相關之該噴嘴射出 液滴。 GPD010.7 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD010.8 較佳地,該射出器係經組構以射出體積 小於2.0皮升之液滴。 GPD010.9 較佳地,在該射出器之一者中之致動器 係經組構以個別致動。 GPD010.10 較佳地,各該射出器具有室及多個入口 通道,該室包含該液體以用於自該噴嘴射出,該多個入口 通道自該室延伸至對應該射出器之貯器。 GPD010.il 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD010.12 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 -124- 201209402 GPD010.13 較佳地,該表面係晶片上實驗室(LOC) 裝置,該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該雜交室陣列係經組構以容納該生物樣品之預定 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。 GPD010.14 較佳地,該貯器陣列具有超過1〇〇〇個And management technology. GPD010.1 This aspect of the invention provides a spotting device for use in a contactless spot-like oligonucleotide probe to a surface having a complementary nucleic acid sequence to be recognized in a biological sample. a nucleic acid sequence, the spotting device comprising: a reservoir array for accommodating the oligonucleotide probe suspended in the fluid; an emitter array in fluid communication with the reservoir, each emitter having an actuating φ device a droplet for ejecting a liquid containing the oligonucleotide probe; and a CMOS circuit for supplying a driving pulse to each of the droplets to emit an actuator to emit a droplet; wherein the CMOS circuit has a digital memory . GPD010.2 Preferably, the CMOS circuit has a pad for electrical connection and an external microprocessor controller GPD010.3 for operating the array of emitters. Preferably, the digital memory stores identification data for external use. The microprocessor controller identifies the device. -123- 201209402 GPD01 0.4 Preferably, the oligonucleotide spotting device also has a support substrate having a reservoir side and an emitter side opposite to the reservoir side, the reservoir array being attached to the reservoir Formed on the side of the injector, the array of emitters being formed on the side of the injector, each of the injectors being configured for fluid communication with a respective one of the probe receptacles. GPD010.5 Preferably, the digital memory stores specifications of the oligonucleotide probe. GPD 010.6 Preferably, each of the injectors has a plurality of actuators and corresponding plurality of nozzles associated with each of the droplet ejection actuators to cause actuation of one of the actuators via The nozzle associated with the actuator emits a droplet. GPD010.7 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD 010.8 Preferably, the injector is configured to emit droplets having a volume of less than 2.0 picoliters. GPD 010.9 Preferably, the actuators in one of the injectors are organized to be individually actuated. GPD 010.10 Preferably, each of the injectors has a chamber and a plurality of inlet passages, the chamber containing the liquid for exiting the nozzle, the plurality of inlet passages extending from the chamber to a reservoir corresponding to the injector. GPD 010.il Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD010.12 Preferably, the CMOS circuit is interposed between the reservoir array and the emitter array. Preferably, the surface is a laboratory on-wafer (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe, the hybridization chamber array being organized A complete series of oligonucleotide probes required to accommodate the predetermined analysis of the biological sample, and the reservoir array is configured to contain the complete oligonucleotide probe required for the predetermined analysis by the LOC device Needle series. GPD010.14 Preferably, the reservoir array has more than one 〇〇〇
GPD010.15 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 GPD010.16 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該表面上 〇 GPD010.17 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 φ 樣之密度點樣該探針至該表面上。 GPD0 10.18 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD010.19 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。 CJPD010.2 0 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 -125- 201209402 樣之速度點樣該探針至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 酸規格、儲存該寡核苷酸規格於彼之數位記憶體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本》該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD01 1.1 本發明之此態樣提供一種點樣裝置,其 係用於無接觸地以寡核苷酸探針點樣晶片上實驗室(LOC) 裝置,該LOC裝置被安裝在印刷電路板(PCB)上之固定陣 列且各該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該探針具有與欲在生物樣品中識別之標的核酸序 -126-GPD 010.15 Preferably, the array of emitters is configured to spot the probe onto the surface at a density greater than 8 probe spots per square millimeter. Preferably, the emitter array is configured to spot the probe onto the surface at a density greater than 60 probe spots per square millimeter. 〇GPD010.17 Preferably, the emitter array The probe is spotted onto the surface with a density of 500 probes per square millimeter to a density of 1,500 probe points per square millimeter. GPD0 10.18 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second. GPD 010.19 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second. CJPD010.2 0 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe to the surface at a rate of more than 20,000 probe points per second -125 - 201209402 per second. on. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir The specification, storage of the oligonucleotide size in the digit memory, and delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the safety of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediary fluid to operate, the machine is transformed from the size and positional correctness of the giant level. Required to transfer fluid to the microscopic volume and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD01 1.1 This aspect of the invention provides a spotting device for spotlessly wafer-on-lab (LOC) devices with oligonucleotide probes mounted on a printed circuit board (PCB) And a fixed array of each of the LOC devices having an array of hybridization chambers for receiving the oligonucleotide probe having the target nucleic acid sequence-126- to be recognized in the biological sample
201209402 列互補之核酸序列,該點樣裝置包含: 單片支持基板; 在該支持基板一側之貯器陣列,該貯器包含 懸浮於液體中之寡核苷酸探針以點樣該PCB LOC裝置;及 在該支持基板另一側之射出器陣列,各該射 組構以分別與該等貯器中之對應一者流體相通, 出器自該對應貯器射出含有該寡核苷酸探針之液 交室之一。 GPD011.2 較佳地,該貯器陣列具有超過 貯器。 GPD011.3 較佳地,各該射出器具有多個 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD011.4 較佳地,該射出器具有室及多 ,該室用於包含來自該對應貯器之流體,該致動 φ 別對應各該噴嘴以使該致動器經由該對應噴嘴射 室之流體之液滴。 GPD011.5 較佳地,該致動器係熱致動器 器係經組構以在該流體中產生蒸氣泡。 GPD011.6 較佳地,該射出器係經組構以 小於100皮升之液滴。 GPD011.7 較佳地,該射出器係經組構以 小於25皮升之液滴。 GPD011.8 較佳地,該射出器係經組構以 足夠量之 上之所有 出器係經 以使該射 滴至該雜 1000 個 噴嘴,以 個致動器 器之一分 出來自該 ,各致動 射出體積 射出體積 射出體積 -127- 201209402 小於6皮升之液滴。 GPD01 1 .9 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD01 1.10 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD011.il 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPD01 1.12 較佳地,該點樣裝置亦具有CMOS電路 以用於提供驅動脈衝給該致動器,該CMOS電路具有銲墊 以用於連接微處理控制器,該微處理控制器操作性控制該 噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移動。 GPD011.13 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD0 11.14 較佳地,該貯器陣列係於該單片支持基 板之一側一體形成。 GPD0 1 1 . 1 5 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 GPD0 1 1 . 1 6 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該表面上 〇 GPD0 1 1 . i 7 較佳地,該射出器陣列係經組構以介於 每平方毫米5 00個探針點樣至每平方毫米1 5 00個探針點 樣之密度點樣該探針至該表面上。 GPD01 1 ·18 較佳地,該CMOS電路係經組構以產生 -128- 201209402 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD01 1.19 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。201209402 A complementary nucleic acid sequence, the spotting device comprising: a monolithic support substrate; a reservoir array on one side of the support substrate, the reservoir comprising an oligonucleotide probe suspended in a liquid to spot the PCB LOC And an emitter array on the other side of the support substrate, each of the arrays being in fluid communication with a corresponding one of the reservoirs, the emitter exiting the corresponding reservoir containing the oligonucleotide probe One of the liquid chambers of the needle. GPD 011.2 Preferably, the reservoir array has a reservoir. GPD 011.3 Preferably, each of the injectors has a plurality of structures configured to eject droplets from the respective nozzles. GPD011.4 Preferably, the injector has a chamber for containing fluid from the corresponding reservoir, the actuation φ corresponding to each nozzle to cause the actuator to pass through the corresponding nozzle chamber Droplets of fluid. GPD 011.5 Preferably, the actuator is a thermal actuator configured to generate vapor bubbles in the fluid. GPD 011.6 Preferably, the injector is configured to have droplets of less than 100 picoliters. GPD 011.7 Preferably, the injector is configured to have droplets of less than 25 picoliters. GPD011.8 Preferably, the injector is configured to dispense all of the actuators above a sufficient amount to cause the droplet to be dispensed to the 1000 nozzles, with one of the actuators being separated therefrom, Each of the actuated injection volume ejection volume ejection volume -127 - 201209402 is less than 6 picoliters of droplets. GPD01 1.9 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPD01 1.10 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD011.il Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPD01 1.12 Preferably, the spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor controller operatively controlling the The relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe. GPD011.13 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD0 11.14 Preferably, the reservoir array is integrally formed on one side of the monolithic support substrate. GPD0 1 1 . 1 5 Preferably, the array of emitters is configured to spot the probe onto the surface at a density greater than 8 probe spots per square millimeter. Preferably, the emitter array is configured to spot the probe onto the surface at a density of more than 60 probes per square millimeter. 〇GPD0 1 1 . The emitter array is configured to spot the probe onto the surface at a density of from 500 probes per square millimeter to 1 500 probe spots per square millimeter. GPD01 1 · 18 Preferably, the CMOS circuit is configured to generate a -128-201209402 drive pulse to cause the emitter array to spot the probe at a rate of more than 100 probes per second. On the surface. GPD01 1.19 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second.
GPD01 1.20 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至安裝在PCB晶圓上之LOC裝置陣列之雜交室中。 由該寡核苷酸點樣裝置所提供之資料自動化包括自動化電 腦控制點樣寡核苷酸至安裝在PCB晶圓上之LOC裝置之 陣列、接收儲存於寡核苷酸貯器中之寡核苷酸規格、儲存 該寡核苷酸規格於彼之數位記憶體,及傳送該寡核苷酸規 格至該LOC裝置或該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。 -129- 201209402 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 點樣寡核苷酸至該安裝於PCB晶圓上之LOC裝置之 陣列加速裝載過程並減少該裝載過程之成本,且在安裝該 LOC裝置至該PCB晶圓上並將彼等焊接之後再點樣該 LOC裝置可增進該寡核苷酸之化學及物理完整性。 GPD012.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣在其上建造晶片上實驗室 (LOC)裝置陣列之矽晶圓,該LOC裝置係經組構以使用該 寡核苷酸探針檢測在生物樣品中之標的核酸序列且各該 LOC裝置具有雜交室陣列以用於接受該寡核苷酸探針,該 寡核苷酸點樣裝置包含: 在該支持基板一側之貯器陣列,該貯器包含足夠量之 懸浮於液體中之寡核苷酸探針以點樣該晶圓上之所有LOC 裝置;及 覆蓋該貯器陣列以與其固定移動之射出器陣列,以使 該射出器自該對應之貯器射出含有該寡核苷酸探針之液滴 至該雜交室之一。 GPD012.2 較佳地,該寡核苷酸點樣裝置亦具有支 持基板,該支持基板具有貯器側及與該貯器側相對之射出 器側,其中該貯器陣列係於該貯器側形成且該射出器陣列 係於該射出器側形成》 GPD012.3 較佳地,各該射出器具有多個噴嘴,以 -130- 201209402 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD012.4 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 GPD012.5 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。GPD01 1.20 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second. This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into an oligonucleotide reservoir of the device and the device ejects the oligonucleotide into a hybridization chamber of an array of LOC devices mounted on a PCB wafer. Data automation provided by the oligonucleotide spotting device includes automated computer controlled spotting of oligonucleotides to an array of LOC devices mounted on a PCB wafer, receiving oligonucleotides stored in oligonucleotide reservoirs The glucosinolate size, the storage of the oligonucleotide in its digital memory, and the delivery of the oligonucleotide specification to the LOC device or other department of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the transfer of the fluid to the microscopic level and positional correctness. -129- 201209402 The data provided by the oligonucleotide spotting device is automated to provide automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. An array of spotted oligonucleotides to the LOC device mounted on the PCB wafer accelerates the loading process and reduces the cost of the loading process, and after mounting the LOC device to the PCB wafer and soldering them, The LOC device enhances the chemical and physical integrity of the oligonucleotide. GPD012.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot on which a wafer on a wafer-on-lab (LOC) device array is constructed, the LOC device being Organizing to detect a target nucleic acid sequence in a biological sample using the oligonucleotide probe and each LOC device has an array of hybridization chambers for receiving the oligonucleotide probe, the oligonucleotide spotting device comprising : a reservoir array on one side of the support substrate, the reservoir comprising a sufficient amount of an oligonucleotide probe suspended in a liquid to spot all of the LOC devices on the wafer; and covering the reservoir array to The moving array of emitters is fixed such that the emitter ejects droplets containing the oligonucleotide probe from the corresponding reservoir to one of the hybridization chambers. GPD012.2 Preferably, the oligonucleotide spotting device also has a support substrate having a reservoir side and an emitter side opposite the reservoir side, wherein the reservoir array is attached to the reservoir side Formed and the emitter array is formed on the emitter side" GPD012.3. Preferably, each of the injectors has a plurality of nozzles, and the emitters are configured to emit droplets from the respective nozzles at -130-201209402. . GPD 012.4 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to be The corresponding nozzle emits droplets of fluid from the chamber. GPD 012.5 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid.
GPD012.6 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPD012.7 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD012.8 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPD012.9 較佳地,該射出器係經組構以射出體積 介於〇.1皮升至1.6皮升之液滴》 GPD012.10 較佳地,在各該射出器中之致動器係經 組構以個別致動》 GPD012.il 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPD012.12 較佳地,該寡核苷酸點樣裝置亦具有 CMOS電路以用於提供驅動脈衝給該致動器,該CMOS電 路具有銲墊以用於連接微處理控制器,該微處理控制器操 作性控制該噴嘴與將被該寡核苷酸探針點樣之表面之間的 相對移動。 -131 - 201209402 GPD012.13 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD012.14 較佳地,該CMOS電路係介於該貯器陣 列及該射出器陣列之間。 GPD012.15 較佳地,該LOC裝置具有雜交室陣列 以用於接受該寡核苷酸探針,該雜交室陣列係經組構以容 納該生物樣品之預定分析所需之完整的寡核苷酸探針系列 ,且該貯器陣列係經組構以包含由該LOC裝置進行之預 定分析所需之完整的寡核苷酸探針系列。 GPD012.16 較佳地,該貯器陣列具有超過1 000個 貯器》 GPD012.17 較佳地,該射出器陣列係經組構以介於 每平方毫米5 00個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該探針至該表面上。 GPD012.18 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD0 12.19 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。 GPD012.20 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 -132- 201209402GPD 012.6 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. GPD 012.7 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD 012.8 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPD 012.9 Preferably, the injector is configured to emit droplets having a volume between 〇.1 picoliter and 1.6 picoliters. GPD012.10 Preferably, the actuator system in each of the injectors Preferably, each of the injectors has a plurality of inlet channels extending from the reservoir to the chamber. GPD012.12 Preferably, the oligonucleotide spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor control The operability controls the relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe. -131 - 201209402 GPD012.13 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD012.14 Preferably, the CMOS circuit is interposed between the array of registers and the array of emitters. GPD012.15 Preferably, the LOC device has an array of hybridization chambers for receiving the oligonucleotide probes, the array of hybridization chambers configured to contain the complete oligonucleoside required for the predetermined analysis of the biological sample A series of acid probes, and the reservoir array is configured to contain the complete series of oligonucleotide probes required for the predetermined analysis by the LOC device. GPD 012.16 Preferably, the reservoir array has more than 1 000 reservoirs. GPD 012.17 Preferably, the array of emitters is configured to spot up to 50,000 probes per square millimeter to each square. A density of 1,500 probes of millimeters was spotted onto the surface. GPD 012.18 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second. GPD0 12.19 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second. GPD 012.20 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second. The mass-produced and inexpensive oligonucleotide spotting device is used as a -132-201209402
成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至在部分深度切割之晶圓上之LOC裝置陣列之雜交 室中。由該寡核苷酸點樣裝置所提供之資料自動化包括自 動化電腦控制點樣寡核苷酸至在部分深度切割之晶圓上之 LOC裝置之陣列、接收儲存於寡核苷酸貯器中之寡核苷酸 規格、儲存該寡核苷酸規格於彼之數位記億體,及傳送該 寡核苷酸規格至該LOC裝置或該自動化製造環境之其他 部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 φ 轉移流體至微觀級之體積及位置正確性所需。 由該寡核苷酸點樣裝置所.提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 點樣寡核苷酸至在部分深度切割之晶圓上之LOC裝 置之陣列加速裝載過程並減少該裝載過程之成本。 GPD0 1 3 · 1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣探針至表面上,該探針具有 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, -133- 201209402 該寡核苷酸點樣裝置包含: 單片支持基板: 在該支持基板一側形成之射出器陣列,以使該射出器 射出含有該寡核苷酸探針之液滴至該表面上;其中當使用 時, 在該陣列中之各射出器係經組構以射出體積小於1 00 皮升之液滴。Cost-effective automation is part of a large manufacturing environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide into the hybridization chamber of the array of LOC devices on the partially deep cut wafer. The data provided by the oligonucleotide spotting device includes automated computer controlled spotting oligonucleotides to an array of LOC devices on partially deep cut wafers, received and stored in an oligonucleotide reservoir. Oligonucleotide size, storage of the oligonucleotide specification in the digits of the digits, and delivery of the oligonucleotide specification to the LOC device or other department of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the macroscopic stage φ to transfer the fluid to the microscopic level and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. The array of oligonucleotides to the LOC device on the partially deep cut wafer accelerates the loading process and reduces the cost of the loading process. GPD0 1 3 · 1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like probe onto a surface having a nucleic acid sequence that is intended to be recognized in a biological sample Complementary nucleic acid sequence, -133- 201209402 The oligonucleotide spotting device comprises: a monolithic support substrate: an emitter array formed on one side of the support substrate such that the emitter emits the oligonucleotide probe Droplets onto the surface; wherein, when in use, each of the emitters in the array are configured to emit droplets having a volume of less than 100 picoliters.
GPD013.2 較佳地,在該陣列中之各射出器係經組 構以射出體積小於25皮升之液滴。 GPD013.3 較佳地,在該陣列中之各射出器係經組 構以射出體積小於6皮升之液滴。 GPD013.4 較佳地,在該陣列中之各射出器係經組 構以射出體積介於0.1皮升至1.6皮升之液滴。 GPD013.5 較佳地,該單片支持基板具有貯器側及GPD 013.2 Preferably, each of the injectors in the array is configured to emit droplets having a volume of less than 25 picoliters. GPD 013.3 Preferably, each of the injectors in the array is configured to emit droplets having a volume of less than 6 picoliters. GPD 013.4 Preferably, each of the injectors in the array is configured to emit droplets having a volume between 0.1 picoliter and 1.6 picoliters. GPD013.5 Preferably, the monolithic support substrate has a reservoir side and
與該貯器側相對之射出側,該射出器陣列係於該射出側形 成,該貯器陣列係於該貯器側形成,各該射出器係經組構 以用於分別與該等探針貯器中之對應一者流體相通。 GPD013.6 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD013.7 較佳地,該射出器具有室及多個致動器 ,該室用於包含由該對應貯器供應之流體,該致動器之一 分別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自 該室之流體之液滴。 GPD013.8 較佳地,該致動器係熱致動器,各致動 -134- 201209402 器係經組構以在該流體中產生蒸氣泡。 GPD013.9 較佳地,在該射出器之一者中之致動器 係經組構以個別致動。 GPD013.10 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。An exiting side opposite the reservoir side, the emitter array being formed on the exit side, the reservoir array being formed on the reservoir side, each of the emitters being configured for use with the probes A corresponding one of the reservoirs is in fluid communication. GPD 013.6 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD013.7 Preferably, the injector has a chamber and a plurality of actuators for containing fluid supplied by the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator Droplets of fluid from the chamber are ejected through the corresponding nozzles. GPD 013.8 Preferably, the actuator is a thermal actuator, each actuation -134 - 201209402 being configured to create a vapor bubble in the fluid. GPD 013.9 Preferably, the actuators in one of the injectors are organized to be individually actuated. GPD013.10 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber.
GPD013.il 較佳地,該寡核苷酸點樣裝置亦具有 CMOS電路以用於提供驅動脈衝給該致動器,該CMOS電 路具有銲墊以用於連接控制微處理器,該控制微處理器操 作性控制該噴嘴與將被該探針點樣之表面之間的相對移動 GPD013.12 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之探針相關之規格資料。 GPD0 1 3 . 1 3 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 GPD013.14 較佳地,該射出器陣列係經組構以高於 φ 每平方毫米60個探針點樣之密度點樣該探針至該表面上 〇 GPD013.15 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該探針至該表面上。 GPD013.16 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD013.17 較佳地,該CMOS電路係經組構以產生 -135- 201209402 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。 GPD013.18 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。GPD013.il preferably, the oligonucleotide spotting device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to the control microprocessor, the control microprocessor The operative control of the relative movement between the nozzle and the surface to be spotted by the probe. GPD013.12 Preferably, the CMOS circuit has a memory for storing specifications relating to the probe in the reservoir. . GPD0 1 3 . 1 3 Preferably, the array of emitters is configured to spot the probe onto the surface at a density greater than 8 probe spots per square millimeter. GPD013.14 Preferably, the emitter array is configured to spot the probe onto the surface at a density greater than φ of 60 probes per square millimeter. 较佳GPD013.15 Preferably, the emitter The array was organized to spot the probe onto the surface at a density of 500 probes per square millimeter to 1,500 probe spots per square millimeter. GPD013.16 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second. GPD013.17 Preferably, the CMOS circuit is configured to generate a -135-201209402 drive pulse to cause the emitter array to spot the probe at a rate of more than 1,400 probes per second. On the surface. GPD013.18 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second.
GPD013.19 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以介於每秒3 00,000個探針點 樣至每秒1,〇〇〇,〇〇〇個探針點樣之速度點樣該探針至該表 面上。 GPD013.20 較佳地,該貯器陣列係於該單片基板之 貯器側一體形成。GPD013.19 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the array of emitters to be spotted at 3,000 probes per second to 1, 1 per second. The needle is spotted at a speed to spot the probe onto the surface. GPD013.20 Preferably, the reservoir array is integrally formed on the reservoir side of the single substrate.
該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上》由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 酸規格、儲存該寡核苷酸規格於彼之數位記億體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 -136- 201209402 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 轉移流體至微觀級之體積及位置正確性所需。特別是,該 裝置點樣該必要低體積探針之能力提供低探針成本,因而 允許該不貴之檢測系統。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into an oligonucleotide reservoir of the device, and the device ejects the oligonucleotide onto the surface to be spotted" by the oligonucleotide spotting device Automating includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotide specifications stored in the oligonucleotide reservoir, and storing the oligonucleotide size in the digits of the oligonucleotide Remember the body and transfer the oligonucleotide specifications to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediary -136- 201209402 fluid-operated machine, which is required for the volume and positional correctness of the transfer from the fluid to the microscopic level and positional correctness. In particular, the ability of the device to spot the necessary low volume probes provides low probe cost, thus allowing for this inexpensive detection system. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment.
GPD014.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣探針至表面上,該探針具有 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, 該寡核苷酸點樣裝置包含: 射出器之陣列,各射出器具有致動器以用於射出含有 該探針之液體之液滴; CMOS電路,以用於提供驅動脈衝給各該致動器以射 出液滴;其中當使用時, 該射出器陣列係以每秒高於1 00個探針點樣之速率點 樣該探針至該表面上。 GPD014.2 較佳地,該射出器陣列係以每秒高於 1,400個探針點樣之速率點樣該探針至該表面上。 GPD014.3 較佳地,該射出器陣列係以每秒高於 2〇, 000個探針點樣之速率點樣該探針至該表面上。 GPD014.4 較佳地,該射出器陣列係以介於每秒 300,000個探針點樣至每秒1,〇〇〇,〇〇〇個探針點樣之速率點 樣該探針至該表面上。 -137- 201209402 GPD014.5 較佳地,該CMOS電路具有用於連接外 部控制微處理器之銲墊以用於操作控制該射出器陣列。 GPD014.6 較佳地,該CMOS電路具有儲存識別資 料之數位記憶體以供外部微處理控制器識別該裝置。 GPD014.7 較佳地,該數位記憶體儲存探針類型資 料及探針位置資料,該探針類型資料識別在該裝置中之探 針類型且該探針位置資料識別各該探針類型之貯器位置。GPD014.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like probe to a surface having a complementary nucleic acid sequence to be recognized in a biological sample. a nucleic acid sequence, the oligonucleotide spotting device comprising: an array of emitters, each emitter having an actuator for ejecting a droplet of liquid containing the probe; a CMOS circuit for providing a drive pulse to each The actuator emits droplets; wherein, when in use, the array of emitters spot the probe onto the surface at a rate of more than 100 probes per second. GPD 014.2 Preferably, the array of emitters spot the probe onto the surface at a rate of more than 1,400 probes per second. GPD 014.3 Preferably, the array of emitters spot the probe onto the surface at a rate of more than 2 000 probes per second. GPD014.4 Preferably, the emitter array spots the probe to the surface at a rate of between 1,300 probes per second to 1, 〇〇〇, 探针 probe spotting per second. on. - 137 - 201209402 GPD 014.5 Preferably, the CMOS circuit has a pad for connecting an external control microprocessor for operational control of the array of emitters. GPD 014.6 Preferably, the CMOS circuit has digital memory for storing identification data for identification by the external microprocessor controller. GPD014.7 Preferably, the digital memory stores probe type data and probe position data, the probe type data identifies a probe type in the device, and the probe position data identifies each of the probe type storage Location.
GPD014.8 較佳地,該寡核苷酸點樣裝置亦具有支 持基板,該支持基板具有貯器側及與該貯器側相對之射出 器側,該射出器陣列係於該射出器側形成,該貯器陣列係 於該貯器側形成,各該射出器係經組構以分別與該等探針 貯器中之對應一者流體相通,以用於射出含有來自該對應 貯器之探針之液滴至該表面上。 GPD014.9 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。GPD014.8 Preferably, the oligonucleotide spotting device also has a support substrate having a reservoir side and an emitter side opposite the reservoir side, the emitter array being formed on the emitter side The reservoir array is formed on the reservoir side, each of the injectors being configured to be in fluid communication with a respective one of the probe reservoirs for injection containing a probe from the corresponding reservoir Droplets of the needle onto the surface. GPD 014.9 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles.
GPD014.10 較佳地,該射出器具有室及多個致動器 ,該室用於包含由該對應貯器供應之流體,該致動器之一 分別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自 該室之流體之液滴。 GPD014.il 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD014.12 較佳地,在該射出器之一者中之致動器 係經組構以個別致動。 GPD014.13 較佳地,各該射出器具有多個自該貯器 -138- 201209402 延伸至該室之入口通道。 GPD014.14 較佳地,該表面係晶片上實驗室(LOC) 裝置,該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針,該雜交室陣列係經組構以容納該生物樣品之預定 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。GPD014.10 Preferably, the injector has a chamber and a plurality of actuators for containing fluid supplied by the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator Droplets of fluid from the chamber are ejected through the corresponding nozzles. GPD014.il Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD 014.12 Preferably, the actuators in one of the injectors are organized to be individually actuated. GPD014.13 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir - 138 - 201209402 to the chamber. GPD014.14 Preferably, the surface is a laboratory on wafer (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe, the array of hybridization chambers being organized to accommodate the organism The complete series of oligonucleotide probes required for the predetermined analysis of the sample, and the reservoir array is organized to contain the complete series of oligonucleotide probes required for the predetermined analysis by the LOC device.
GPD014.15 較佳地,該貯器陣列具有超過1 000個 貯器》 GPD014.16 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD014.17 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。 GPD014.18 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。 GPD014.19 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以介於每秒3 00,000個探針點 樣至每秒1,000,000個探針點樣之速度點樣該探針至該表 面上。 GPD014.20 較佳地,該貯器陣列係於該單片基板之 貯器側一體形成。 -139- 201209402 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上、接收儲存於寡核苷酸貯器中之寡核苷 酸規格、儲存該寡核苷酸規格於彼之數位記憶體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置之高點樣速率 進而提供高點樣通量且減少該產品檢測系統之整體成本。 該裝置亦可作爲中介流體操作之機轉,該機轉係自巨觀級 之體積及位置正確性轉移流體至微觀級之體積及位置正確 性所需。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD015.1 本發明之此態樣提供一種生化沉積裝置 ,其係用於在表面上無接觸地沉積生化物質,該生化沉積 裝置包含: 支持基板; -140- 201209402 ' 在該基板一側之貯器陣列,該貯器係經組構以用於包 含多種生化物質;及 在該支持基板另一側之射出器陣列,各該射出器係經 組構以用於與該貯器流體相通;其中當使用時, 該射出器陣列以每秒高於1 00個液滴之速率射出含有 該生化物質之液滴至該表面上。 GPD015.2 較佳地,該射出器陣列以每秒高於GPD014.15 Preferably, the reservoir array has more than 1 000 reservoirs. GPD014.16 Preferably, the CMOS circuit is configured to generate drive pulses such that the array of emitters is above 100 per second. The probe spotted the spot to the probe onto the surface. GPD 014.17 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second. GPD 014.18 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second. GPD014.19 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the array of emitters to be spotted at a rate of between 3,000,000 probes per second to 1,000,000 probes per second. The probe is onto the surface. GPD014.20 Preferably, the reservoir array is integrally formed on the reservoir side of the single substrate. -139- 201209402 This mass-produced and inexpensive oligonucleotide spotting device is used as part of a cost-effective automated mass production environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, receiving the oligonucleotides stored in the oligonucleotide reservoir The specification, storage of the oligonucleotide size in the digit memory, and delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The high spotting rate of the device in turn provides high spot throughput and reduces the overall cost of the product inspection system. The device can also be used as an intermediate fluid operation machine, which is required for the volume and position correctness transfer fluid to the microscopic volume and positional correctness. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD015.1 This aspect of the invention provides a biochemical deposition apparatus for depositing a biochemical substance on a surface without contact, the biochemical deposition apparatus comprising: a support substrate; -140-201209402 'Storage on one side of the substrate An array of containers for containing a plurality of biochemical materials; and an array of emitters on the other side of the support substrate, each of the emitters being configured for fluid communication with the reservoir; When in use, the array of emitters ejects droplets containing the biochemical onto the surface at a rate of more than 100 droplets per second. GPD015.2 Preferably, the emitter array is higher than per second
1,400個液滴之速率射出含有該生化物質之液滴至該表面 上。 GPD015.3 較佳地,該射出器陣列以每秒高於 20,000個液滴之速率射出含有該生化物質之液滴至該表面 上。 GPD015.4 較佳地,該射出器陣列以介於每秒 300,000個液滴至每秒1,000,000個液滴之速率射出含有該 生化物質之液滴至該表面上。 GPD015.5 較佳地,該在貯器陣列中之生化物質係 寡核苷酸探針,該寡核苷酸探針具有與欲在生物樣品中檢 測之標的核酸序列互補之核酸序列,且該表面係晶片上實 驗室(LOC)裝置,該LOC裝置具有雜交室陣列以用於接受 該寡核苷酸探針。 GPD015.6 較佳地,該雜交室陣列係經組構以容納 該生物樣品之預定分析所需之完整的寡核苷酸探針系列, 且該貯器陣列係經組構以包含由該LOC裝置進行之預定 分析所需之完整的寡核苷酸探針系列。 -141 - 201209402 GPD015.7 較佳地,該貯器陣列具有超過1 000個 貯器。 GPD015.8 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD015.9 較佳地,該射出器具有室及多個致動器The rate of 1,400 droplets ejects droplets containing the biochemical onto the surface. GPD 015.3 Preferably, the array of emitters ejects droplets containing the biochemical onto the surface at a rate of more than 20,000 droplets per second. GPD 015.4 Preferably, the array of emitters ejects droplets containing the biochemical onto the surface at a rate of between 300,000 droplets per second to 1,000,000 droplets per second. GPD015.5 Preferably, the biochemical substance in the reservoir array is an oligonucleotide probe having a nucleic acid sequence complementary to the target nucleic acid sequence to be detected in the biological sample, and A surface-on-wafer laboratory (LOC) device having an array of hybridization chambers for receiving the oligonucleotide probe. GPD015.6 Preferably, the hybridization chamber array is configured to accommodate a complete series of oligonucleotide probes required for a predetermined analysis of the biological sample, and the reservoir array is configured to comprise the LOC A complete series of oligonucleotide probes required for the intended analysis of the device. -141 - 201209402 GPD015.7 Preferably, the reservoir array has more than 1 000 reservoirs. GPD 015.8 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD015.9 Preferably, the injector has a chamber and a plurality of actuators
,該室用於包含具有由該對應貯器供應之懸浮寡核苷酸探 針之流體,該致動器之一分別對應各該噴嘴以使該致動器 經由該對應噴嘴射出來自該室之流體之液滴》 GPD015.10 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD015.il 較佳地,該射出器係經組構以射出體積 小於1〇〇皮升之液滴。 GPD0 15.12 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPD015.13 較佳地,該射出器係經組構以射出體積a chamber for containing a fluid having a suspension oligonucleotide probe supplied by the corresponding reservoir, one of the actuators corresponding to each of the nozzles for causing the actuator to exit the chamber via the corresponding nozzle Droplets of Fluid" GPD 015.10 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD015.il Preferably, the injector is configured to emit droplets having a volume of less than 1 〇〇 picoliter. GPD0 15.12 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPD015.13 Preferably, the injector is configured to emit volume
小於6皮升之液滴。 GPD015.14 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPD0 15.15 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD015.16 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。Droplets less than 6 picoliters. GPD015.14 Preferably, the injector is configured to emit droplets having a volume between 0.1 picoliter and 1.6 picolitres. GPD0 15.15 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD 015.16 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber.
GPD015.17 較佳地,該生化沉積裝置亦具有CMOS 電路以用於提供驅動脈衝給該致動器,該CMOS電路具有 -142- 201209402 銲墊以用於連接微處理控制器,該微處理控制器操作性控 制該噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移 動。 GPD015.18 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD015.19 較佳地,該射出器陣列係經組構以高於 每平方毫米8個液滴之密度射出含有該生化物質之液滴至GPD015.17 Preferably, the biodeposition device also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a -142-201209402 pad for connecting to the microprocessor controller, the microprocessor control The operability controls the relative movement between the nozzle and the surface to be spotted by the oligonucleotide probe. GPD015.18 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD015.19 Preferably, the emitter array is configured to emit droplets containing the biochemical substance at a density of more than 8 droplets per square millimeter to
GPD015.20 較佳地,該射出器陣列係經組構以高於 每平方毫米60個液滴之密度射出含有該生化物質之液滴 至該表面上。 該大量生產且不貴之生化沉積裝置係用來作爲具成本 效益之自動化大量製造環境中之一部分。生化物質係經裝 載於該裝置之生化貯器中,且該裝置藉由將該生化物質自 彼之生化貯器射出至將被沉積之表面上以將彼等沉積於表 φ 面上。由該生化沉積裝置所提供之資料自動化包括自動化 電腦控制之分配該生化物質至該將被點樣之表面上、接收 儲存於生化物質貯器中之生化物質規格、儲存該生化物質 規格於彼之數位記億體,及傳送該生化物質規格至該自動 化製造環境之部門。 該生化沉積裝置提供自動化、體積及位置精準、快速 且高密度之生化物質沉積技術,以簡化該自動化製造環境 之複雜性、增加該自動化製造環境之可靠性、增加該自動 化製造環境之保全性、增加該自動化製造環境之安全性及 -143- 201209402 減少該自動化製造環境之成本。該裝置之高沉積速率進而 提供高沉積通量且減少該整體產品成本。該裝置亦可作爲 中介流體操作之機轉,該機轉係自巨觀級之體積及位置正 確性轉移流體至微觀級之體積及位置正確性所需。 由該生化物質沉積裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD0 16.1 本發明之此態樣提供一種寡核苷酸點樣 裝置,其係用於無接觸地點樣探針至表面上,該探針具有 與欲在生物樣品中識別之標的核酸序列互補之核酸序列, 該寡核苷酸點樣裝置包含: 射出器之陣列,各射出器具有致動器以用於射出含有 該探針之液體之液滴; CMOS電路,以用於提供驅動脈衝給各該致動器以射 出液滴:其中 該射出器陣列係經組構以高於每平方毫米1個探針點 樣之密度點樣該探針至該表面上。 GPD016.2 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該表面上。 GPD016.3 較佳地’該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該表面上 〇 GPD016.4 較佳地’該射出器陣列係經組構以介於 每平方毫米5 00個探針點樣至每平方毫米1 500個探針點 -144- 201209402 樣之密度點樣該探針至該表面上。 GPD016.5 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1 00個探針點樣之 速度點樣該探針至該表面上。 GPD016.6 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於1,400個探針點樣 之速度點樣該探針至該表面上。GPD 015.20 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density greater than 60 droplets per square millimeter. This mass-produced and inexpensive biochemical deposition unit is used as part of a cost-effective automated mass production environment. The biochemical material is loaded into the bioreactor of the device, and the device is deposited on the surface to be deposited by depositing the biochemical material from the biochemical reservoir onto the surface to be deposited. The data provided by the biochemical deposition device includes automatic computer controlled distribution of the biochemical substance to the surface to be spotted, receiving biochemical material specifications stored in the biochemical material reservoir, and storing the biochemical material specifications in the A number of billions of bodies, and the delivery of the biochemical specifications to the department of the automated manufacturing environment. The biochemical deposition device provides automated, volumetric and positional, fast and high density biochemical deposition techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the security of the automated manufacturing environment. Increase the safety of this automated manufacturing environment and reduce the cost of this automated manufacturing environment. The high deposition rate of the device in turn provides high deposition flux and reduces overall product cost. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctivity of the volume and position of the macroscopic level to be transferred to the microscopic level. The data provided by the biochemical deposition device provides automation, security, preservation and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD0 16.1 This aspect of the invention provides an oligonucleotide spotting device for use in a contactless spot-like probe having a nucleic acid complementary to a target nucleic acid sequence to be recognized in a biological sample. a sequence, the oligonucleotide spotting device comprising: an array of emitters, each emitter having an actuator for ejecting a droplet of liquid containing the probe; a CMOS circuit for providing a drive pulse to each of the The actuator is configured to eject droplets: wherein the array of emitters is configured to spot the probe onto the surface at a density greater than 1 probe spot per square millimeter. GPD 016.2 Preferably, the array of emitters is configured to spot the probe onto the surface at a density greater than 8 probe spots per square millimeter. GPD 016.3 preferably 'the emitter array is configured to spot the probe onto the surface at a density greater than 60 probe spots per square millimeter. 〇GPD016.4 preferably' the emitter array The probe was spotted onto the surface with a density of 5,000 probes per square millimeter to 1,500 probe points per square millimeter - 144 - 201209402. GPD 016.5 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 100 probes per second. GPD 016.6 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot the probe onto the surface at a rate of more than 1,400 probes per second.
GPD016.7 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以每秒高於20,000個探針點 樣之速度點樣該探針至該表面上。 GPD016.8 較佳地,該CMOS電路係經組構以產生 驅動脈衝以使該射出器陣列以介於每秒300,000個探針點 樣至每秒1,000,000個探針點樣之速度點樣該探針至該表 面上。 GPD016.9 較佳地,該CMOS電路具有用於連接外 φ 部控制微處理器之銲墊以用於操作控制該射出器陣列。 GPD016.10 較佳地,該CMOS電路具有儲存識別資 料之數位記憶體以供外部微處理控制器識別該裝置。 GPD016.il 較佳地,該數位記憶體儲存探針類型資 料及探針位置資料,該探針類型資料識別在該裝置中之探 針類型且該探針位置資料識別各該探針類型之貯器位置。 GPD016.12 較佳地,該寡核苷酸點樣裝置亦具有支 持基板,該支持基板具有貯器側及與該貯器側相對之射出 器側,該射出器陣列係於該射出器側形成,該貯器陣列係 -145- 201209402 於該貯器側形成,各該射出器係經組構以分別與該等探針 貯器中之對應一者流體相通’以用於射出含有來自該對應 貯器之探針之液滴至該表面上。 GPD016.13 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD016.14 較佳地,該射出器具有室及多個致動器 ,該室用於包含由該對應貯器供應之流體,該致動器之一 分別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自 該室之流體之液滴。 GPD0 16.15 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD016.16 較佳地,在該射出器之一者中之致動器 係經組構以個別致動。 GPD016.17 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPD016.18 較佳地,該表面係晶片上實驗室(LOC) 裝置’該LOC裝置具有雜交室陣列以用於接受該寡核苷 酸探針’該雜交室陣列係經組構以容納該生物樣品之預定 分析所需之完整的寡核苷酸探針系列,且該貯器陣列係經 組構以包含由該LOC裝置進行之預定分析所需之完整的 寡核苷酸探針系列。 GPD016.19 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。 GPD016.20 較佳地,該貯器陣列係於該單片基板之 -146- 201209402 貯器側一體形成》 該大量生產且不貴之寡核苷酸點樣裝置係用來作爲具 成本效益之自動化大量製造環境中之一部分。寡核苷酸係 經裝載於該裝置之寡核苷酸貯器,且該裝置將該寡核苷酸 射出至將被點樣之表面上。由該寡核苷酸點樣裝置所提供 之資料自動化包括自動化電腦控制之分配該寡核苷酸至該 將被點樣之表面上'接收儲存於寡核苷酸貯器中之寡核苷 φ 酸規格、儲存該寡核苷酸規格於彼之數位記億體,及傳送 該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣裝置提供自動化、體積及位置精準、 快速且高密度之寡核苷酸點樣技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。該裝置亦可作爲中介 流體操作之機轉,該機轉係自巨觀級之體積及位置正確性 φ 轉移流體至微觀級之體積及位置正確性所需。特別是,該 裝置以該必要之高密度點樣之能力提供低終產品尺寸,因 而允許該不貴之檢測系統。 由該寡核苷酸點樣裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GPD017.1 本發明之此態樣提供一種生化沉積裝置 ,其係用於在表面上無接觸地沉積生化物質,該生化沉積 裝置包含: -147- 201209402 支持基板: 在該基板一側之貯器陣列,該貯器係經組構以用於包 含多種生化物質;及 在該支持基板另一側之射出器陣列,該射出器係與該 貯器流體相通,且經組構以高於每平方毫米1個液滴之密 度射出含有該生化物質之液滴至該表面上。 GPD017.2 較佳地,該射出器陣列係經組構以高於 每平方毫米8個液滴之密度射出含有該生化物質之液滴至 該表面上。 GPD017.3 較佳地,該射出器陣列係經組構以高於 每平方毫米60個液滴之密度射出含有該生化物質之液滴 至該表面上。 GPD017.4 較佳地,該射出器陣列係經組構以介於 每平方毫米500個液滴至每平方毫米1 500個液滴之密度 射出含有該生化物質之液滴至該表面上。 GPD017.5 較佳地,該射出器陣列係經組構以每秒 高於1〇〇個液滴之速率射出含有該生化物質之液滴至該表 面上。 GPD017.6 較佳地,該射出器陣列係經組構以每秒 高於1,400個液滴之速率射出含有該生化物質之液滴至該 表面上。 GPD017.7 較佳地,該射出器陣列係經組構以每秒 高於20,000個液滴之速率射出含有該生化物質之液滴至 該表面上。 -148- 201209402 GPD017.8 較佳地,該射出器陣列係經組構以介於 每秒300,000個液滴至每秒1,000,000個液滴之速率射出 含有該生化物質之液滴至該表面上。 GPD017.9 較佳地,該在貯器陣列中之生化物質係GPD 016.7 Preferably, the CMOS circuit is configured to generate drive pulses to cause the emitter array to spot the probe onto the surface at a rate of more than 20,000 probe points per second. GPD016.8 Preferably, the CMOS circuit is configured to generate a drive pulse to cause the emitter array to spot at a rate of between 300,000 probes per second to 1,000,000 probe spots per second. The needle is on the surface. GPD 016.9 Preferably, the CMOS circuit has pads for connecting the external φ portion control microprocessor for operational control of the emitter array. GPD016.10 Preferably, the CMOS circuit has digital memory for storing identification data for identification by the external microprocessor controller. Preferably, the digital memory stores probe type data and probe position data, the probe type data identifies a probe type in the device and the probe position data identifies a storage of each probe type Location. GPD016.12 Preferably, the oligonucleotide spotting device also has a support substrate having a reservoir side and an emitter side opposite the reservoir side, the emitter array being formed on the emitter side The reservoir array -145-201209402 is formed on the reservoir side, each of the injectors being configured to be in fluid communication with a respective one of the probe reservoirs for use in the injection containing the corresponding A droplet of the probe of the reservoir onto the surface. GPD016.13 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPD016.14 Preferably, the injector has a chamber and a plurality of actuators for containing fluid supplied by the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator Droplets of fluid from the chamber are ejected through the corresponding nozzles. GPD0 16.15 Preferably, the actuator is a thermal actuator, each actuator being configured to generate a vapor bubble in the fluid. GPD 016.16 Preferably, the actuators in one of the injectors are organized to be individually actuated. GPD 016.17 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPD016.18 Preferably, the surface-based wafer-on-lab (LOC) device 'the LOC device has an array of hybridization chambers for accepting the oligonucleotide probe'. The hybrid chamber array is organized to accommodate the organism The complete series of oligonucleotide probes required for the predetermined analysis of the sample, and the reservoir array is organized to contain the complete series of oligonucleotide probes required for the predetermined analysis by the LOC device. GPD016.19 Preferably, the reservoir array has more than one reservoir. GPD016.20 Preferably, the reservoir array is integrally formed on the -146-201209402 reservoir side of the monolithic substrate. The mass-produced and inexpensive oligonucleotide spotting device is used as a cost-effective automation. A part of a large manufacturing environment. The oligonucleotide is loaded into the oligonucleotide reservoir of the device and the device ejects the oligonucleotide onto the surface to be spotted. Automated data provided by the oligonucleotide spotting device includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted to receive an oligonucleoside φ stored in an oligonucleotide reservoir The acid specification, the storage of the oligonucleotide specification in the digits of the human body, and the delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting device provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the macroscopic stage φ to transfer the fluid to the microscopic level and positional correctness. In particular, the device provides a low end product size with the necessary high density spotting capabilities, thereby allowing the inexpensive inspection system. The data provided by the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPD017.1 This aspect of the invention provides a biochemical deposition apparatus for depositing a biochemical substance on a surface without contact, the biochemical deposition apparatus comprising: -147- 201209402 support substrate: a reservoir on one side of the substrate An array configured to contain a plurality of biochemical materials; and an array of emitters on the other side of the support substrate, the emitter being in fluid communication with the reservoir and configured to be above each square The density of one droplet of millimeters ejects droplets containing the biochemical onto the surface. GPD 017.2 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density greater than 8 droplets per square millimeter. GPD 017.3 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density greater than 60 droplets per square millimeter. GPD 017.4 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a density of from 500 droplets per square millimeter to 1,500 droplets per square millimeter. GPD 017.5 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a rate of more than one droplet per second. GPD 017.6 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a rate of more than 1,400 droplets per second. GPD 017.7 Preferably, the array of emitters is configured to eject droplets containing the biochemical onto the surface at a rate of more than 20,000 droplets per second. -148- 201209402 GPD017.8 Preferably, the emitter array is configured to emit droplets containing the biochemical to the surface at a rate of between 300,000 droplets per second to 1,000,000 droplets per second. on. GPD017.9 Preferably, the biochemical system in the reservoir array
寡核苷酸探針,該寡核苷酸探針具有與欲在生物樣品中檢 測之標的核酸序列互補之核酸序列,且該表面係晶片上實 驗室(LOC)裝置,該LOC裝置具有雜交室陣列以用於接受 該寡核苷酸探針。 GPD017.10 較佳地,該雜交室陣列係經組構以容納 該生物樣品之預定分析所需之完整的寡核苷酸探針系列, 且該貯器陣列係經組構以包含由該LOC裝置進行之預定 分析所需之完整的寡核苷酸探針系列。 GPD017.il 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。 GPD017.12 較佳地,各該射出器具有多個噴嘴,以 φ 使該射出器係經組構以自各噴嘴分別射出液滴。 GPD017.13 較佳地,該射出器具有室及多個致動器 ,該室用於包含具有由該對應貯器供應之懸浮寡核苷酸探 針之流體,該致動器之一分別對應各該噴嘴以使該致動器 經由該對應噴嘴射出來自該室之流體之液滴。 GPD017.14 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPD017.15 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 -149- 201209402 GPD017.16 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPD017.17 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。An oligonucleotide probe having a nucleic acid sequence complementary to a target nucleic acid sequence to be detected in a biological sample, and the surface is a laboratory on-wafer (LOC) device having a hybridization chamber An array is used to accept the oligonucleotide probe. GPD 017.10 Preferably, the hybridization chamber array is configured to accommodate a complete series of oligonucleotide probes required for predetermined analysis of the biological sample, and the reservoir array is organized to comprise the LOC A complete series of oligonucleotide probes required for the intended analysis of the device. GPD017.il Preferably, the reservoir array has more than one reservoir. GPD 017.12 Preferably, each of the injectors has a plurality of nozzles, and the emitters are configured to emit droplets from the respective nozzles. GPD017.13 Preferably, the injector has a chamber and a plurality of actuators for containing a fluid having a suspension oligonucleotide probe supplied by the corresponding reservoir, one of the actuators corresponding to Each of the nozzles causes the actuator to eject droplets of fluid from the chamber via the corresponding nozzle. GPD 017.14 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPD 017.15 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. - 149 - 201209402 GPD 017.16 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPD 017.17 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber.
GPD017.18 較佳地,該生化沉積裝置亦具有CMOS 電路以用於提供驅動脈衝給該致動器,該CMOS電路具有 銲墊以用於連接微處理控制器,該微處理控制器操作性控 制該噴嘴與將被該寡核苷酸探針點樣之表面之間的相對移 動。 GPD017.19 較佳地,該CMOS電路具有記憶體以用 於儲存與該貯器中之寡核苷酸探針相關之規格資料。 GPD017.20 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。GPD 017.18 Preferably, the biochemical deposition apparatus also has a CMOS circuit for providing a drive pulse to the actuator, the CMOS circuit having a pad for connecting to a microprocessor controller, the microprocessor controller being operatively controlled The relative movement of the nozzle to the surface to be spotted by the oligonucleotide probe. GPD 017.19 Preferably, the CMOS circuit has a memory for storing specifications relating to the oligonucleotide probes in the reservoir. GPD 017.20 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters.
該大量生產且不貴之生化沉積裝置係用來作爲具成本 效益之自動化大量製造環境中之一部分。生化物質係經裝 載於該裝置之生化貯器中,且該裝置藉由將該生化物質自 彼之生化貯器射出至將被沉積之表面上以將彼等沉積於表 面上。由該生化沉積裝置所提供之資料自動化包括自動化 電腦控制之分配該生化物質至該將被點樣之表面上、接收 儲存於生化物質貯器中之生化物質規格、儲存該生化物質 規格於彼之數位記憶體,及傳送該生化物質規格至該自動 化製造環境之部門。 該生化沉積裝置提供自動化、體積及位置精準、快速 且高密度之生化物質沉積技術,以簡化該自動化製造環境 -150- 201209402 之複雜性、增加該自動化製造環境之可靠性、增加該自動 化製造環境之保全性、增加該自動化製造環境之安全性及 減少該自動化製造環境之成本。該裝置亦可作爲中介流體 操作之機轉,該機轉係自巨觀級之體積及位置正確性轉移 流體至微觀級之體積及位置正確性所需。特別是,該裝置 以該必要之高密度沉積生化物質之能力提供低終產品尺寸 ,因而允許該不貴之產品。This mass-produced and inexpensive biochemical deposition unit is used as part of a cost-effective automated mass production environment. The biochemical material is loaded into the bioreactor of the device and the device is deposited on the surface by depositing the biochemical material from the biochemical reservoir onto the surface to be deposited. The data provided by the biochemical deposition device includes automatic computer controlled distribution of the biochemical substance to the surface to be spotted, receiving biochemical material specifications stored in the biochemical material reservoir, and storing the biochemical material specifications in the Digital memory, and the department that delivers the biochemical specifications to the automated manufacturing environment. The biochemical deposition device provides automated, volumetric and positional, fast and high-density biochemical deposition technology to simplify the complexity of the automated manufacturing environment -150-201209402, increase the reliability of the automated manufacturing environment, and increase the automated manufacturing environment. The preservation, the safety of the automated manufacturing environment and the cost of the automated manufacturing environment. The device can also be used as an intermediate fluid operation machine, which is required for the volume and positional correctness of the fluid from the macroscopic level to the volume and positional correctness of the microscopic level. In particular, the device provides a low end product size with the ability to deposit biochemical materials at the necessary high density, thus allowing for this inexpensive product.
由該生化物質沉積裝置所提供之資料自動化提供在該 自動化製造環境中自動化、安全、保全且不貴之資料監測 及管理技術。 GAL001.1 本發明之此態樣提供一種用於點樣寡核 苷酸之機器人系統,其包含: 寡核苷酸點樣裝置,其係用於無接觸地點樣寡核苷酸 至表面上,該寡核苷酸點樣裝置具有射出器陣列、至少一 個與一或多個該射出器流體相通之貯器及CMOS驅動電路 ’各射出器具有液滴射出致動器以用於射出含有該寡核苷 酸之液體的液滴至表面上,該CMOS驅動電路係用於提供 液滴射出之驅動脈衝給各該液滴射出致動器;及 用於裝載寡核苷酸至該寡核苷酸點樣裝置之設備,該 設備具有平台及多個經安裝以相對該平台移動之寡核苷酸 容器,該平台係用於可拆卸地安裝多個該寡核苷酸點樣裝 置,各該寡核苷酸容器具有液滴分配器以射出含有寡核苷 酸之流體液滴至該寡核苷酸點樣裝置之貯器。 GAL001.2 較佳地,該寡核苷酸點樣裝置具有銲墊 -151 - 201209402 以用於電連接該CMOS驅動電路與該設備,以使該設備下 載寡核苷酸資料至該CMOS驅動電路內之記憶體。 GAL001.3 較佳地,該設備具有照相機以光學對準 該平台與該液滴分配器。 GAL001.4 較佳地,該寡核苷酸點樣裝置具有支持 基板以支持該CMOS電路,該支持基板具有貯器側及與該 貯器側相對之射出器側,該至少一個貯器係於該貯器側形 成,該射出器陣列係於該射出器側形成。 GAL001.5 較佳地,該寡核苷酸點樣裝置在該貯器 側具有貯器陣列,各該貯器係與二或多個該射出器流體相 通。 GAL001.6 較佳地,該寡核苷酸係經組構爲與生物 樣品中之標的核酸序列雜交之探針,且該液體係探針溶液 ,以使該液滴射出致動器經由各該射出器所具有之個別噴 嘴射出該探針溶液之液滴。 GAL001.7 較佳地,該寡核苷酸點樣裝置具有至少 一個共同室以用於包含將藉由該多個噴嘴被射出之流體。 GAL001.8 較佳地,各該共同室具有多個與該貯器 流體相通之室入口。 GAL001.9 較佳地,該寡核苷酸點樣裝置具有貯器 陣列及分別與該貯器之一流體相通之共同室陣列。 GAL001.10 較佳地,該液滴射出致動器各具有用於 在該流體中產生蒸氣泡之加熱器,以經由對應該液滴射出 致動器之噴嘴射出液滴。 -152- 201209402 GAL001.11 較佳地,該射出器係各經組構以射出體 積小於1 00皮升之該探針溶液之液滴。 GAL001.12 較佳地,該射出器係各經組構以射出體 積小於25皮升之該探針溶液之液滴。 GAL001.13 較佳地,該射出器係各經組構以射出體 積小於6皮升之該探針溶液之液滴。The data provided by the biochemical deposition device provides automation, security, preservation and inexpensive data monitoring and management techniques in the automated manufacturing environment. GAL001.1 This aspect of the invention provides a robotic system for spotting oligonucleotides comprising: an oligonucleotide spotting device for use in contactless spot-like oligonucleotides onto a surface, The oligonucleotide spotting device has an array of emitters, at least one reservoir in fluid communication with one or more of the injectors, and a CMOS drive circuit each having a droplet ejection actuator for emitting the oligo a droplet of a liquid of a nucleotide to a surface, the CMOS driving circuit for providing a driving pulse for droplet ejection to each of the droplet ejection actuator; and for loading an oligonucleotide to the oligonucleotide A device for spotting a device having a platform and a plurality of oligonucleotide containers mounted for movement relative to the platform, the platform being for detachably mounting a plurality of the oligonucleotide spotting devices, each of the oligo The nucleotide container has a droplet dispenser to eject a droplet of fluid containing the oligonucleotide to a reservoir of the oligonucleotide spotting device. GAL001.2 Preferably, the oligonucleotide spotting device has a pad-151 - 201209402 for electrically connecting the CMOS driver circuit and the device to enable the device to download oligonucleotide data to the CMOS driver circuit Memory inside. GAL001.3 Preferably, the apparatus has a camera to optically align the platform with the drop dispenser. GAL001.4 Preferably, the oligonucleotide spotting device has a support substrate having a reservoir side having an reservoir side and an emitter side opposite the reservoir side, the at least one reservoir being tied to The reservoir side is formed, and the emitter array is formed on the emitter side. GAL001.5 Preferably, the oligonucleotide spotting device has an array of reservoirs on the reservoir side, each of the reservoirs being in fluid communication with two or more of the injectors. GAL001.6 Preferably, the oligonucleotide is configured to be a probe that hybridizes to a target nucleic acid sequence in a biological sample, and the liquid system probe solution is such that the droplet ejection actuator is via the respective The individual nozzles of the injector emit droplets of the probe solution. GAL001.7 Preferably, the oligonucleotide spotting device has at least one common chamber for containing a fluid to be ejected by the plurality of nozzles. GAL001.8 Preferably, each of the common chambers has a plurality of chamber inlets in fluid communication with the reservoir. GAL001.9 Preferably, the oligonucleotide spotting device has a reservoir array and a common chamber array in fluid communication with one of the reservoirs, respectively. GAL 001.10 Preferably, the droplet ejection actuators each have a heater for generating vapor bubbles in the fluid to eject droplets via nozzles corresponding to the droplet ejection actuators. Preferably, the injectors are each configured to emit droplets of the probe solution having a volume of less than 100 picoliters. GAL001.12 Preferably, the injectors are each configured to emit droplets of the probe solution having a volume of less than 25 picoliters. GAL001.13 Preferably, the injectors are each configured to emit droplets of the probe solution having a volume of less than 6 picoliters.
GAL001.14 較佳地,該射出器係各經組構以射出體 積介於0.1皮升至1.6皮升之該探針溶液之液滴。 GAL001.15 較佳地,該容器係用於包含該探針溶液 等分之瓶,各該瓶具有內含記憶體之品質保證晶片以儲存 識別該寡核苷酸之資料。 GAL001.16 較佳地,該瓶各具有液滴分配器及電接 觸件以用於接受致動信號以活化該液滴分配器。 GAL001.17 較佳地,該液滴分配器具有壓電致動器 GAL001.18 較佳地,該設備係經組構以用於自該瓶 之品質保證晶片傳送資料至該寡核苷酸點樣裝置之CMOS 電路。 GAL001.19 較佳地,該瓶係懸於鄰近該平台之一面 上之寡核苷酸點樣裝置之架上,該架係經組構以與各該瓶 建立個別之電連接。 該用於裝載寡核苷酸點樣裝置之設備係用來作爲具成 本效益之自動化大量製造環境中之一部分,以分配包含於 寡核苷酸微量瓶中之寡核苷酸至該寡核苷酸點樣裝置之寡 -153- 201209402 核苷酸貯器中。由該設備所提供之資料自動化包括自動化 電腦控制之分配該寡核苷酸至該寡核苷酸點樣裝置之寡核 苷酸貯器、檢查儲存於該微量瓶之記憶體中的寡核苷酸資 料以與必須被裝載至該寡核苷酸點樣裝置之寡核苷酸的規 格清單比對,及儲存該寡核苷酸資料至該寡核苷酸點樣裝 置之記憶體。 該用於裝載寡核苷酸點樣裝置之設備提供自動化且體 積及位置精準之寡核苷酸分配技術,以簡化該自動化製造 環境之複雜性、增加該自動化製造環境之可靠性、增加該 自動化製造環境之保全性、增加該自動化製造環境之安全 性及減少該自動化製造環境之成本。 由該用於裝載寡核苷酸點樣裝置之設備所提供之資料 自動化提供在該自動化製造環境中自動化、安全、保全且 不貴之資料監測及管理技術。 GPA001 .1 本發明之此態樣提供一種用於點樣寡核 苷酸探針至微流體裝置之寡核苷酸點樣機器人,該微流體 裝置具有關於裝載於該微流體裝置之寡核苷酸探針的資料 之數位記憶體,該寡核苷酸分配機器人包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針; 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通: 安裝表面,其係用於可拆卸地安裝該微流體裝置以供 該微流體裝置相對於該射出器之移動;及 -154-GAL001.14 Preferably, the injectors are each configured to emit droplets of the probe solution having a volume between 0.1 picoliters and 1.6 picoliters. GAL001.15 Preferably, the container is for use in an aliquot of the probe solution, each bottle having a quality assurance wafer containing a memory for storing information identifying the oligonucleotide. GAL001.16 Preferably, the bottles each have a drop dispenser and an electrical contact for receiving an actuation signal to activate the drop dispenser. GAL001.17 Preferably, the droplet dispenser has a piezoelectric actuator GAL001.18. Preferably, the apparatus is configured to transfer data from the quality assurance wafer of the bottle to the oligonucleotide point. The CMOS circuit of the device. GAL001.19 Preferably, the bottle is suspended from a shelf of an oligonucleotide spotting device adjacent one of the platforms, the frame being configured to establish an electrical connection with each of the bottles. The apparatus for loading an oligonucleotide spotting device is used as part of a cost-effective automated mass production environment to dispense oligonucleotides contained in oligonucleotide microbottles to the oligonucleoside Acid spotting device in the oligo-153- 201209402 nucleotide reservoir. The data provided by the apparatus is automated including automated computer controlled distribution of the oligonucleotide to the oligonucleotide reservoir of the oligonucleotide spotting device, and examination of the oligonucleoside stored in the memory of the microbottle. The acid data is aligned with a specification list of oligonucleotides that must be loaded into the oligonucleotide spotting device, and the oligonucleotide data is stored into the memory of the oligonucleotide spotting device. The device for loading an oligonucleotide spotting device provides automated and volumetric and positionally accurate oligonucleotide dispensing techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the automation The preservation of the manufacturing environment, increasing the safety of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. The data provided by the device for loading the oligonucleotide spotting device is automated to provide automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPA001.1 This aspect of the invention provides an oligonucleotide spotting robot for spotting an oligonucleotide probe to a microfluidic device having an oligonucleoside loaded on the microfluidic device a digital memory of the acid probe, the oligonucleotide dispensing robot comprising: a reservoir array for accommodating the oligonucleotide probe suspended in the fluid; an emitter array, each of the emitter systems Arranging to be in fluid communication with a respective one of the reservoirs: a mounting surface for removably mounting the microfluidic device for movement of the microfluidic device relative to the injector; and -154 -
201209402 控制處理器,其係用於操作控制該射出器及 面;其中 該控制處理器係經組構以活化該射出器、移 擇之射出器以活化與該微流體裝置之配準及下載 該數位記憶體。 GPA001.2 較佳地,該寡核苷酸點樣機器 照相機以光學回饋由該控制處理器選擇之射出器 體裝置之間的配準。 GPA001.3 較佳地,該貯器陣列具有超過 貯器》 GPA001.4 較佳地,該寡核苷酸點樣機器 介於該貯器陣列與該射出器陣列之間的CMOS CMOS電路係經組構以根據來自該控制微處理器 號驅動該射出器之陣列,其中該CMOS電路儲存 核苷酸探針之資料。 GPA001 .5 較佳地,該安裝表面係經組構 個正交軸移動之平台,且該射出器之陣列係緊鄰 裝且面對該平台。 GPA001.6 較佳地,該微流體裝置係晶片 (LOC)裝置,該LOC裝置具有雜交室陣列以用於 核苷酸探針,該探針具有與欲在生物樣品中識別 酸序列互補之核酸序列,該雜交室陣列係經組構 生物樣品之預定分析所需之完整的寡核苷酸探針 該貯器陣列係經組構以包含由該LOC裝置進行 該安裝表 動該經選 該資料至 人亦具有 與該微流 1 000 個 人亦具有 電路,該 之控制信 關於該寡 以沿著二 該平台安 上實驗室 接受該寡 之標的核 以容納該 系歹ϋ ,且 之預定分 -155- 201209402 析所需之完整的寡核苷酸探針系列。 GPA001.7 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPA001.8 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。201209402 a control processor for operationally controlling the injector and the face; wherein the control processor is configured to activate the injector, the selective emitter to activate registration with the microfluidic device and to download the Digital memory. GPA 001.2 Preferably, the oligonucleotide spotting machine camera optically feeds the registration between the emitter devices selected by the control processor. GPA001.3 Preferably, the reservoir array has a reservoir CMOS CMOS circuit that exceeds the reservoir GPA001.4. Preferably, the oligonucleotide spotting machine is interposed between the reservoir array and the emitter array. The array is configured to drive the array of emitters based on the microprocessor number from the control, wherein the CMOS circuit stores information of the nucleotide probes. GPA001.5 Preferably, the mounting surface is a platform that is configured to move orthogonal axes, and the array of injectors is immediately adjacent to and facing the platform. GPA001.6 Preferably, the microfluidic device is a wafer (LOC) device having an array of hybridization chambers for nucleotide probes having nucleic acids complementary to the acid sequence to be recognized in the biological sample a sequence, the hybridization chamber array is a complete oligonucleotide probe required for predetermined analysis of a tissue biological sample, the reservoir array being configured to include the installation of the LOC device for the installation of the data The person also has a circuit with the micro-flowing 1 000 people, and the control letter about the oligo to attach the laboratory to the nucleus of the oligo to accommodate the system along the platform, and the predetermined score - 155- 201209402 Analysis of the complete range of oligonucleotide probes required. GPA 001.7 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPA001.8 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator to be The corresponding nozzle emits droplets of fluid from the chamber.
GPA001.9 較佳地,該致動器係熱致動器,各致動GPA001.9 Preferably, the actuator is a thermal actuator, each actuated
I 器係經組構以在該流體中產生蒸氣泡。 GPA001 . 10 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPA001.il 較佳地,該射出器係經組構以射出體積 小於2 5皮升之液滴。 GPA001.12 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。The I device is configured to generate vapor bubbles in the fluid. GPA001. 10 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters. GPA001.il Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPA 001.12 Preferably, the ejector is configured to emit droplets having a volume of less than 6 picoliters.
GPA001.13 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPA001.14 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPA00 1.15 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPA001.16 較佳地,該射出器陣列係經組構以高於 每平方毫米1個探針點樣之密度點樣該寡核苷酸探針至該 LOC裝置上。 -156- 201209402 GPA001.17 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該寡核苷酸至該LOC 裝置上。 GPA001.18 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該寡核苷酸至該 LOC裝置上。GPA 001.13 Preferably, the ejector is configured to eject droplets having a volume ranging from 0.1 picoliter to 1.6 picoliters. GPA 001.14 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPA00 1.15 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPA 001.16 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the LOC device at a density greater than 1 probe spot per square millimeter. Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a density greater than 8 probe spots per square millimeter. GPA 001.18 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a density of more than 60 probe spots per square millimeter.
GPA001.19 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米15〇0個探針點 樣之密度點樣該寡核苷酸至該LOC裝置上。 GPA001.20 較佳地,該射出器陣列係經組構以每秒 高於100個探針點樣之速率點樣該寡核苷酸至該LOC裝 置上。 該寡核苷酸點樣機器人係用來作爲具成本效益之自動 化大量製造環境中之一部分。經裝載之寡核苷酸點樣裝置 被機器人拾起,該機器人放置該寡核苷酸點樣裝置並命令 φ 該裝置射出該寡核苷酸至該將被點樣之表面上。由該寡核 苷酸點樣機器人所提供之資料自動化包括自動化電腦控制 之分配該寡核苷酸至該將被點樣之表面上、讀取儲存於該 寡核苷酸點樣裝置之貯器中的寡核苷酸之規格、檢查儲存 於該寡核苷酸點樣裝置之貯器中的寡核苷酸規格以與該相 關資料庫比對、儲存該寡核苷酸規格於該將被點樣之裝置 的記憶體中,及傳送該寡核苷酸規格至該自動化製造環境 之其他部門。 該寡核苷酸點樣機器人提供自動化、體積及位置精準 -157- 201209402 、快速且高密度之寡核苷酸點樣技術,以簡化該自動化製 造環境之複雜性、增加該自動化製造環境之可靠性'增加 該自動化製造環境之保全性、增加該自動化製造環境之安 全性及減少該自動化製造環境之成本。 由該寡核苷酸點樣機器人所提供之資料自動化提供在 該自動化製造環境中自動化、安全、保全且不貴之資料監 測及管理技術。 GPA003.1 本發明之此態樣提供一種用於點樣寡核 苷酸探針至晶片上實驗室(LOC)裝置之陣列之寡核苷酸點 樣機器人,各LOC裝置具有關於裝載於該LOC裝置之寡 核苷酸探針的資料之數位記憶體,該寡核苷酸分配機器人 包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針: 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通; 安裝表面,其係用於可拆卸地安裝該LOC裝置之陣 列以供該LOC裝置之陣列相對於該射出器之移動;及 控制處理器,其係用於操作控制該射出器及該安裝表 面;其中 該控制處理器係經組構以活化該射出器、移動該經選 擇之射出器以活化與一或多個該LOC裝置之配準及下載 與各該LOC裝置特別相關之資料至該LOC裝置之數位記 億體。 -158- 201209402 GPA003.2 較佳地,該寡核苷酸點樣機器人亦具有 照相機以光學回饋由該控制處理器選擇之射出器與該LOC 裝置之間的配準。 GPA003.3 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。 GPA003.4 較佳地,該寡核苷酸點樣機器人亦具有GPA001.19 Preferably, the emitter array is configured to spot the oligonucleotide at a density of 500 probes per square millimeter to a density of 15 探针0 probes per square millimeter. On the LOC device. GPA 001.20 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a rate of more than 100 probe spots per second. The oligonucleotide spotting robot is used as part of a cost-effective automated mass production environment. The loaded oligonucleotide spotting device is picked up by the robot, which places the oligonucleotide spotting device and commands φ the device to eject the oligonucleotide onto the surface to be spotted. Automating the data provided by the oligonucleotide spotting robot includes automated computer controlled distribution of the oligonucleotide to the surface to be spotted, reading the reservoir stored in the oligonucleotide spotting device Specification of the oligonucleotide in question, checking the oligonucleotide size stored in the reservoir of the oligonucleotide spotting device to compare with the relevant database, storing the oligonucleotide specification in the The memory of the spotted device, and the delivery of the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting robot provides automated, volumetric and positional precision -157-201209402, fast and high-density oligonucleotide spotting technology to simplify the complexity of the automated manufacturing environment and increase the reliability of the automated manufacturing environment Sexuality increases the security of the automated manufacturing environment, increases the security of the automated manufacturing environment, and reduces the cost of the automated manufacturing environment. The data provided by the oligonucleotide spotting robot automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GPA003.1 This aspect of the invention provides an oligonucleotide spotting robot for spotting an oligonucleotide probe to an array of on-wafer laboratory (LOC) devices, each LOC device having a loading on the LOC a digital memory of the data of the oligonucleotide probe of the device, the oligonucleotide dispensing robot comprising: a reservoir array for accommodating the oligonucleotide probe suspended in the fluid: an array of emitters, Each of the injectors is configured to be in fluid communication with a respective one of the reservoirs; a mounting surface for detachably mounting the array of LOC devices for output relative to the array of LOC devices a movement of the device; and a control processor for operatively controlling the injector and the mounting surface; wherein the control processor is configured to activate the emitter, move the selected injector to activate A plurality of the LOC devices are registered and download data that is particularly relevant to each of the LOC devices to the digital device of the LOC device. -158- 201209402 GPA003.2 Preferably, the oligonucleotide spotting robot also has a camera to optically feedback the registration between the emitter selected by the control processor and the LOC device. GPA003.3 Preferably, the reservoir array has more than one reservoir. GPA003.4 Preferably, the oligonucleotide spotting robot also has
介於該貯器陣列與該射出器陣列之間的CMOS電路,該 CMOS電路係經組構以根據來自該控制微處理器之控制信 號驅動該射出器之陣列,其中該CMOS電路儲存關於該寡 核苷酸探針之資料。 GPA003.5 較佳地,該LOC裝置之陣列係安裝至 印刷電路板(PCB),該PCB進而可拆卸地安裝至該安裝表 面,該安裝表面係經組構以沿著二個正交軸移動之平台, 且該射出器之陣列係緊鄰該平台安裝且面對該平台。 GPA003.6 較佳地,各該LOC裝置具有雜交室陣 φ 列以用於接受該寡核苷酸探針,該探針具有與欲在生物樣 品中識別之標的核酸序列互補之核酸序列,該雜交室陣列 係經組構以容納該生物樣品之預定分析所需之完整的寡核 苷酸探針系列,且該貯器陣列係經組構以包含由該LOC 裝置進行之預定分析所需之完整的寡核苷酸探針系列。 GPA003.7 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPA003.8 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 -159- 201209402 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 GPD003.9 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPA003.1 0 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。a CMOS circuit interposed between the reservoir array and the emitter array, the CMOS circuit being configured to drive an array of the emitters according to a control signal from the control microprocessor, wherein the CMOS circuit stores Information on nucleotide probes. GPA003.5 Preferably, the array of LOC devices is mounted to a printed circuit board (PCB), which in turn is detachably mounted to the mounting surface, the mounting surface being configured to move along two orthogonal axes The platform, and the array of injectors is mounted adjacent to the platform and facing the platform. GPA003.6 Preferably, each of the LOC devices has a hybrid array φ column for accepting the oligonucleotide probe having a nucleic acid sequence complementary to the target nucleic acid sequence to be recognized in the biological sample, The hybridization chamber array is configured to accommodate a complete series of oligonucleotide probes required for a predetermined analysis of the biological sample, and the reservoir array is configured to contain the predetermined analysis required by the LOC device Complete range of oligonucleotide probes. GPA 003.7 Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPA003.8 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to -159 - 201209402 corresponding to each of the nozzles The actuator emits droplets of fluid from the chamber via the corresponding nozzle. GPD003.9 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPA003.10 Preferably, the injector is configured to emit droplets having a volume of less than 100 picoliters.
GPA003.il 較佳地,該射出器係經組構以射出體積 小於2 5皮升之液滴。 GPA003.1 2 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPA003.1 3 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPA003.1 4 較佳地,在各該射出器中之致動器係經 組構以個別致動。GPA003.il Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPA003.1 2 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPA 003.1 Preferably, the injector is configured to eject droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPA 003.1 4 Preferably, the actuators in each of the injectors are configured to be individually actuated.
GPA003.1 5 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPA003.1 6 較佳地,該射出器陣列係經組構以高於 每平方毫米1個探針點樣之密度點樣該寡核苷酸探針至該 LOC裝置上。 GPA003.1 7 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該寡核苷酸至該LOC 裝置上。 GP A003.1 8 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該寡核苷酸至該 -160- 201209402 LOC裝置上。 GPA003.19 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米15〇〇個探針點 樣之密度點樣該寡核苷酸至該LOC裝置上。 GPA003.20 較佳地,該射出器陣列係經組構以每秒 高於100個探針點樣之速率點樣該寡核苷酸至該LOC裝 置上。GPA 003.1 5 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPA003.1 6 Preferably, the array of emitters is configured to spot the oligonucleotide probe onto the LOC device at a density greater than 1 probe spot per square millimeter. GPA 003.1 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a density greater than 8 probe spots per square millimeter. GP A003.1 8 Preferably, the array of emitters is configured to spot the oligonucleotide onto the -160-201209402 LOC device at a density of more than 60 probe spots per square millimeter. GPA003.19 Preferably, the emitter array is configured to spot the oligonucleotide at a density of 500 probes per square millimeter to 15 probes per square millimeter. On the LOC device. GPA003.20 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a rate of more than 100 probes per second.
該寡核苷酸點樣機器人係用來作爲具成本效益之自動 化大量製造環境中之一部分。經裝載之寡核苷酸點樣裝置 被機器人拾起’該機器人放置該寡核苷酸點樣裝置並命令 該裝置射出該寡核苷酸至該安裝於PCB晶圓上之LOC裝 置之陣列的雜交室中。由該寡核苷酸點樣機器人所提供之 資料自動化包括自動化電腦控制之分配該寡核苷酸至該安 裝於PCB晶圓上之LOC裝置之陣列的雜交室中、讀取儲 存於該寡核苷酸點樣裝置之貯器中的寡核苷酸之規格、檢 査儲存於該寡核苷酸點樣裝置之貯器中的寡核苷酸規格以 與該相關資料庫比對、儲存該寡核苷酸規格於該將被點樣 之LOC裝置的記憶體中,及傳送該寡核苷酸規格至該自 動化製造環境之其他部門。 該寡核苷酸點樣機器人提供自動化、體積及位置精準 、快速且高密度之寡核苷酸點樣技術,以簡化該自動化製 造環境之複雜性、增加該自動化製造環境之可靠性、增加 該自動化製造環境之保全性、增加該自動化製造環境之安 全性及減少該自動化製造環境之成本。 -161 - 201209402 由該寡核苷酸點樣機器人所提供之資料自動化提供在 該自動化製造環境中自動化、安全、保全且不貴之資料監 測及管理技術。 點樣寡核苷酸至該安裝於PCB晶圓上之LOC裝置之 陣列加速裝載過程並減少該裝載過程之成本,且在安裝該 LOC裝置至該PCB晶圓上並將彼等焊接之後再點樣該 LOC裝置可增進該寡核苷酸之化學及物理完整性。 GPA004.1 本發明之此態樣提供一種用於點樣寡核 苷酸探針至矽晶圓之寡核苷酸點樣機器人,在該矽晶圓上 建造晶片上實驗室(LOC)裝置,各LOC裝置具有關於裝載 於該LOC裝置之試劑的資料之數位記憶體,該寡核苷酸 分配機器人包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針; 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通; 安裝表面,其係用於可拆卸地安裝該LOC裝置之陣 列以供該LOC裝置之陣列相對於該射出器之移動:及 控制處理器,其係用於操作控制該射出器及該安裝表 面;其中 該控制處理器係經組構以活化該射出器、移動該經選 擇之射出器以活化與一或多個該LOC裝置之配準及下載 與各該LOC裝置特別相關之資料至該LOC裝置之數位記 憶體。 -162- 201209402 GPA004.2 較佳地,該寡核苷酸點樣機器人亦具有 照相機以光學回饋由該控制處理器選擇之射出器與該L0C 裝置之間的配準。 GPA004.3 較佳地,該貯器陣列具有超過1〇〇〇個 貯器。The oligonucleotide spotting robot is used as part of a cost-effective automated mass production environment. The loaded oligonucleotide spotting device is picked up by the robot. The robot places the oligonucleotide spotting device and commands the device to emit the oligonucleotide to the array of LOC devices mounted on the PCB wafer. In the hybridization room. The data provided by the oligonucleotide spotting robot includes automated computer controlled distribution of the oligonucleotide to the hybridization chamber of the array of LOC devices mounted on the PCB wafer, read and stored in the oligo Specification of the oligonucleotide in the reservoir of the gluconate spotting device, checking the oligonucleotide specifications stored in the reservoir of the oligonucleotide spotting device to compare with the relevant database, and storing the oligo Nucleotide specifications are in the memory of the LOC device to be spotted, and the oligonucleotide specifications are delivered to other departments of the automated manufacturing environment. The oligonucleotide spotting robot provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. -161 - 201209402 The data provided by the oligonucleotide spotting robot is automated to provide automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. An array of spotted oligonucleotides to the LOC device mounted on the PCB wafer accelerates the loading process and reduces the cost of the loading process, and after mounting the LOC device to the PCB wafer and soldering them, The LOC device enhances the chemical and physical integrity of the oligonucleotide. GPA004.1 This aspect of the invention provides an oligonucleotide spotting robot for spotting an oligonucleotide probe to a wafer, on which a wafer-on-lab (LOC) device is constructed, Each LOC device has a digital memory of data relating to reagents loaded in the LOC device, the oligonucleotide dispensing robot comprising: a reservoir array for containing the oligonucleotide probe suspended in the fluid; An array of injectors, each of the injectors being configured to be in fluid communication with a respective one of the reservoirs; a mounting surface for detachably mounting the array of LOC devices for array of the LOC devices Movement relative to the injector: and a control processor for operatively controlling the injector and the mounting surface; wherein the control processor is configured to activate the emitter and move the selected injector to The registration with one or more of the LOC devices is activated and data associated with each of the LOC devices is downloaded to the digital memory of the LOC device. Preferably, the oligonucleotide spotting robot also has a camera to optically feedback the registration between the injector selected by the control processor and the LOC device. GPA004.3 Preferably, the reservoir array has more than one reservoir.
GPA004.4 較佳地,該寡核苷酸點樣機器人亦具有 介於該貯器陣列與該射出器陣列之間的CMOS電路’該 CMOS電路係經組構以根據來自該控制微處理器之控制信 號驅動該射出器之陣列,其中該CMOS電路儲存關於該寡 核苷酸探針之資料。 GPA004.5 較佳地,該矽晶圓係經部分切割以製備 用於切割成各自分開之LOC裝置,且該矽晶圓係經可拆 卸地安裝至該安裝表面,該安裝表面係經組構以沿著二個 正交軸移動之平台,且該射出器之陣列係緊鄰該平台安裝 且面對該平台。 GPA004.6 較佳地,各該LOC裝置具有雜交室陣 列以用於接受該寡核苷酸探針,該探針具有與欲在生物樣 品中識別之標的核酸序列互補之核酸序列,該雜交室陣列 係經組構以容納該生物樣品之預定分析所需之完整的寡核 苷酸探針系列,且該貯器陣列係經組構以包含由該LOC 裝置進行之預定分析所需之完整的寡核苷酸探針系列◊ GPA004.7 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPA004.8 較佳地,該射出器具有室及多個致動器 -163- 201209402 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 GPA004.9 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPA004.1 0 較佳地,該射出器係經組構以射出體積 小於1 〇〇皮升之液滴。GPA004.4 Preferably, the oligonucleotide spotting robot also has a CMOS circuit between the reservoir array and the emitter array. The CMOS circuit is configured to be based on the microprocessor from the control. A control signal drives an array of the emitters, wherein the CMOS circuitry stores information about the oligonucleotide probes. GPA004.5 Preferably, the germanium wafer is partially cut to prepare for cutting into separate LOC devices, and the germanium wafer is detachably mounted to the mounting surface, the mounting surface being structured The platform is moved along two orthogonal axes, and the array of emitters is mounted adjacent to the platform and facing the platform. GPA004.6 Preferably, each of the LOC devices has an array of hybridization chambers for receiving the oligonucleotide probe having a nucleic acid sequence complementary to a target nucleic acid sequence to be recognized in a biological sample, the hybridization chamber The array is configured to accommodate a complete series of oligonucleotide probes required for a predetermined analysis of the biological sample, and the reservoir array is configured to contain the integrity required for the predetermined analysis performed by the LOC device Oligonucleotide Probe Series ◊ GPA004.7 Preferably, each of the injectors has a plurality of nozzles such that the emitters are configured to eject droplets from each nozzle. GPA004.8 Preferably, the injector has a chamber and a plurality of actuators - 163 - 201209402 for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to An actuator emits droplets of fluid from the chamber via the corresponding nozzle. GPA 04.9 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPA004.1 0 Preferably, the injector is configured to emit droplets having a volume of less than 1 〇〇 picoliter.
GPA004.il 較佳地,該射出器係經組構以射出體積 小於25皮升之液滴。 GPA004.1 2 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPA004.1 3 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPA004.1 4 較佳地,在各該射出器中之致動器係經 組構以個別致動。GPA004.il Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPA004.1 2 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPA004.1 3 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliters to 1.6 picoliters. GPA004.1 4 Preferably, the actuators in each of the injectors are configured to be individually actuated.
GPA004.1 5 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPA004.1 6 較佳地,該射出器陣列係經組構以高於 每平方毫米1個探針點樣之密度點樣該寡核苷酸探針至該 LOC裝置上》 GPA004.1 7 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該寡核苷酸至該LOC 裝置上。 GPA004.1 8 較佳地,該射出器陣列係經組構以高於 -164- 201209402 每平方毫米60個探針點樣之密度點樣該寡核苷酸至該 LOC裝置上》 GPA004.19 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該寡核苷酸至該LOC裝置上。 GPA004.20 較佳地,該射出器陣列係經組構以每秒 高於1〇〇個探針點樣之速率點樣該寡核苷酸至該LOC裝GPA 004.1 5 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPA004.1 6 Preferably, the emitter array is configured to spot the oligonucleotide probe onto the LOC device at a density greater than 1 probe spot per square millimeter" GPA004.1 7 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a density greater than 8 probe spots per square millimeter. GPA004.1 8 Preferably, the emitter array is configured to spot the oligonucleotide onto the LOC device at a density of 60 probe spots per square millimeter above -164 - 201209402" GPA004.19 Preferably, the array of emitters is configured to spot the oligonucleotide onto the LOC device at a density of 500 probes per square millimeter to a density of 1,500 probes per square millimeter. GPA004.20 Preferably, the emitter array is configured to spot the oligonucleotide to the LOC at a rate of more than one probe spot per second.
該寡核苷酸點樣機器人係用來作爲具成本效益之自動 化大量製造環境中之一部分。經裝載之寡核苷酸點樣裝置 被機器人拾起,該機器人放置該寡核苷酸點樣裝置並命令 該裝置射出該寡核苷酸至該經部分深度切割之晶圓上之 LOC裝置之陣列的雜交室中。由該寡核苷酸點樣機器人所 提供之資料自動化包括自動化電腦控制之分配該寡核苷酸 至該經部分深度切割之晶圓上之LOC裝置之陣列的雜交 φ 室中、讀取儲存於該寡核苷酸點樣裝置之貯器中的寡核苷 酸之規格、檢査儲存於該寡核苷酸點樣裝置之貯器中的寡 核苷酸規格以與該相關資料庫比對、儲存該寡核苷酸規格 於該將被點樣之LOC裝置的記億體中,及傳送該寡核苷 酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣機器人提供自動化、體積及位置精準 、快速且高密度之寡核苷酸點樣技術,以簡化該自動化製 造環境之複雜性、增加該自動化製造環境之可靠性、增加 該自動化製造環境之保全性、增加該自動化製造環境之安 -165- 201209402 全性及減少該自動化製造環境之成本。 由該寡核苷酸點樣機器人所提供之資料自動化提供在 該自動化製造環境中自動化、安全、保全且不貴之資料監 測及管理技術。 點樣寡核苷酸至在部分深度切割之晶圓上之LOC裝 置之陣列加速裝載過程並減少該裝載過程之成本。 GPA005.1 本發明之此態樣提供用於點樣寡核苷酸 探針至基板上之寡核苷酸點樣機器人,該寡核苷酸分配機 器人包含: 貯器陣列,其係用於容納該懸浮於流體中之寡核苷酸 探針; 射出器陣列,各該射出器係經組構以分別與該等貯器 中之對應一者流體相通; 安裝表面,其係用於可拆卸地安裝該基板以供該基板 相對於該射出器之移動;及 控制處理器,其係用於操作控制該射出器及該安裝表 面:其中 該射出器陣列係經組構以高於每平方毫米1個探針點 樣之密度點樣該探針至該表面上。 GPA005.2 較佳地,該射出器陣列係經組構以高於 每平方毫米8個探針點樣之密度點樣該探針至該基板上。 GPA005.3 較佳地,該射出器陣列係經組構以高於 每平方毫米60個探針點樣之密度點樣該探針至該基板上 -166- 201209402 GPA005.4 較佳地,該射出器陣列係經組構以介於 每平方毫米500個探針點樣至每平方毫米1 500個探針點 樣之密度點樣該探針至該基板上。 GPA005.5 較佳地,該基板係晶片上實驗室(LOC)The oligonucleotide spotting robot is used as part of a cost-effective automated mass production environment. The loaded oligonucleotide spotting device is picked up by the robot, which places the oligonucleotide spotting device and commands the device to emit the oligonucleotide to the LOC device on the partially deep cut wafer The array is in the hybridization chamber. The data provided by the oligonucleotide spotting robot includes automated computer controlled distribution of the oligonucleotide to the hybridization φ chamber of the array of LOC devices on the partially deep cut wafer, read and stored in The specification of the oligonucleotide in the reservoir of the oligonucleotide spotting device, and the specification of the oligonucleotide stored in the reservoir of the oligonucleotide spotting device are compared with the relevant database, The oligonucleotide is stored in the cell of the LOC device to be spotted, and the oligonucleotide is transferred to other sectors of the automated manufacturing environment. The oligonucleotide spotting robot provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automated manufacturing environment security, increased automation of the automated manufacturing environment and reduced costs of the automated manufacturing environment. The data provided by the oligonucleotide spotting robot automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. The array of oligonucleotides to the LOC device on the partially deep cut wafer accelerates the loading process and reduces the cost of the loading process. GPA005.1 This aspect of the invention provides an oligonucleotide spotting robot for spotting an oligonucleotide probe onto a substrate, the oligonucleotide dispensing robot comprising: a reservoir array for accommodating An oligonucleotide probe suspended in a fluid; an array of emitters, each of the emitters being configured to be in fluid communication with a respective one of the reservoirs; a mounting surface for detachably Mounting the substrate for movement of the substrate relative to the emitter; and controlling a processor for operatively controlling the emitter and the mounting surface: wherein the array of emitters is configured to be higher than 1 mm per square millimeter The density of the probe spotted the probe onto the surface. GPA 005.2 Preferably, the array of emitters is configured to spot the probe onto the substrate at a density greater than 8 probe spots per square millimeter. GPA005.3 Preferably, the array of emitters is configured to spot the probe onto the substrate at a density greater than 60 probe spots per square millimeter - 166 - 201209402 GPA 005.4 preferably, The array of emitters was organized to spot the probe onto the substrate at a density of 500 probes per square millimeter to a density of 1,500 probes per square millimeter. GPA005.5 Preferably, the substrate is on-wafer laboratory (LOC)
裝置,該LOC裝置具有關於裝載於該LOC裝置之寡核苷 酸探針的資料之數位記憶體,且該控制微處理器係經組構 以活化該射出器、移動該經選擇之射出器以活化與該LOC 裝置之配準及下載該資料至該數位記憶體。 GPA005.6 較佳地,該寡核苷酸點樣機器人亦具有 照相機以光學回饋由該控制處理器選擇之射出器與該LOC 裝置之間的配準。 GPA005.7 較佳地,該貯器陣列具有超過1000個 貯器。 GPA005.8 較佳地,該寡核苷酸點樣機器人亦具有 介於該貯器陣列與該射出器陣列之間的CMOS電路,該 φ CMOS電路係經組構以根據來自該控制微處理器之控制信 號驅動該射出器之陣列,其中該CMOS電路儲存關於該寡 核苷酸探針之資料。 GPA005.9 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台’且該射出器之陣列係緊鄰該平台安 裝且面對該平台。 GPA005.1 0 較佳地,該LOC裝置具有雜交室陣列 以用於接受該寡核苷酸探針,該探針具有與欲在生物樣品 中識別之標的核酸序列互補之核酸序列,該雜交室陣列係 -167- 201209402 經組構以容納該生物樣品之預定分析所需之完整的寡核苷 酸探針系列,且該貯器陣列係經組構以包含由該LOC裝 置進行之預定分析所需之完整的寡核苷酸探針系列。 GPA005.il 較佳地,各該射出器具有多個噴嘴,以 使該射出器係經組構以自各噴嘴分別射出液滴。 GPA005.1 2 較佳地,該射出器具有室及多個致動器 ,該室用於包含來自該對應貯器之流體,該致動器之一分 別對應各該噴嘴以使該致動器經由該對應噴嘴射出來自該 室之流體之液滴。 GPA005.1 3 較佳地,該致動器係熱致動器,各致動 器係經組構以在該流體中產生蒸氣泡。 GPA005.1 4 較佳地,該射出器係經組構以射出體積 小於100皮升之液滴。 GPA005.1 5 較佳地,該射出器係經組構以射出體積 小於2 5皮升之液滴。 GPA005.1 6 較佳地,該射出器係經組構以射出體積 小於6皮升之液滴。 GPA005.1 7 較佳地,該射出器係經組構以射出體積 介於0.1皮升至1.6皮升之液滴。 GPA005.1 8 較佳地,在各該射出器中之致動器係經 組構以個別致動。 GPA005.1 9 較佳地,各該射出器具有多個自該貯器 延伸至該室之入口通道。 GPA005.20 較佳地,該射出器陣列係經組構以每秒 -168- 201209402 高於100個探針點樣之速率點樣該寡核苷酸至該基板上。Means, the LOC device having digital memory for data of an oligonucleotide probe loaded on the LOC device, and the control microprocessor is configured to activate the emitter and move the selected emitter to Activating the registration with the LOC device and downloading the data to the digital memory. GPA005.6 Preferably, the oligonucleotide spotting robot also has a camera to optically feedback the registration between the emitter selected by the control processor and the LOC device. GPA005.7 Preferably, the reservoir array has more than 1000 reservoirs. GPA005.8 Preferably, the oligonucleotide spotting robot also has a CMOS circuit between the reservoir array and the emitter array, the φ CMOS circuit being configured to be based on the microprocessor from the control A control signal drives the array of emitters, wherein the CMOS circuit stores information about the oligonucleotide probe. GPA 005.9 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes and the array of emitters is mounted adjacent to the platform and facing the platform. GPA005.1 0 Preferably, the LOC device has an array of hybridization chambers for receiving the oligonucleotide probe having a nucleic acid sequence complementary to the target nucleic acid sequence to be recognized in the biological sample, the hybridization chamber Array-167-201209402 is configured to accommodate a complete series of oligonucleotide probes required for predetermined analysis of the biological sample, and the reservoir array is configured to include a predetermined analysis by the LOC device A complete range of oligonucleotide probes is required. GPA 005. il. Preferably, each of the injectors has a plurality of nozzles such that the injectors are configured to eject droplets from the respective nozzles. GPA005.1 2 Preferably, the injector has a chamber and a plurality of actuators for containing fluid from the corresponding reservoir, one of the actuators corresponding to each of the nozzles to cause the actuator Droplets of fluid from the chamber are ejected through the corresponding nozzles. GPA 005.1 Preferably, the actuator is a thermal actuator, each actuator being configured to create a vapor bubble in the fluid. GPA 005.1 Preferably, the injector is configured to eject droplets having a volume of less than 100 picoliters. GPA 005.1 5 Preferably, the injector is configured to emit droplets having a volume of less than 25 picoliters. GPA 005.1 6 Preferably, the injector is configured to emit droplets having a volume of less than 6 picoliters. GPA 005.1 Preferably, the injector is configured to emit droplets having a volume ranging from 0.1 picoliter to 1.6 picoliters. GPA 005.1 8 Preferably, the actuators in each of the injectors are configured to be individually actuated. GPA 005.1 9 Preferably, each of the injectors has a plurality of inlet passages extending from the reservoir to the chamber. GPA 005.20 Preferably, the array of emitters is organized to spot the oligonucleotide onto the substrate at a rate of -168 to 201209402 per 100 probes per second.
該寡核苷酸點樣機器人係用來作爲具成本效益之自動 化大量製造環境中之一部分。經裝載之寡核苷酸點樣裝置 被機器人拾起,該機器人放置該寡核苷酸點樣裝置並命令 該裝置射出該寡核苷酸至該將被點樣之LOC裝置之雜交 室中。由該寡核苷酸點樣機器人所提供之資料自動化包括 自動化電腦控制之分配該寡核苷酸至該將被點樣之LOC 裝置之雜交室中、讀取儲存於該寡核苷酸點樣裝置之貯器 中的寡核苷酸之規格、檢査儲存於該寡核苷酸點樣裝置之 貯器中的寡核苷酸規格以與該相關資料庫比對、儲存該寡 核苷酸規格於該將被點樣之LOC裝置的記憶體中,及傳 送該寡核苷酸規格至該自動化製造環境之其他部門。 該寡核苷酸點樣機器人提供自動化、體積及位置精準 、快速且高密度之寡核苷酸點樣技術,以簡化該自動化製 造環境之複雜性、增加該自動化製造環境之可靠性、增加 該自動化製造環境之保全性、增加該自動化製造環境之安 全性及減少該自動化製造環境之成本。特別是,該機器人 以該必要之高密度點樣之能力提供低終LOC裝置尺寸, 因而允許該不貴之檢測系統。 由該寡核苷酸點樣機器人所提供之資料自動化提供在 該自動化製造環境中自動化、安全、保全且不貴之資料監 測及管理技術。 GSS 00 1.1本發明之此態樣提供一種用於微陣列點樣及 基因分析之系統,該系統包含: -169- 201209402 容器’該容器含有用於與不同標的核酸序列雜交之探 針; 分別固定於各該容器之積體電路,各該積體電路具有 儲存關於在該容器中之探針的探針規格資料之容器數位記 億體; 用於支持選自該容器之探針陣列之微流體裝置,該經 選擇之探針對應所欲基因測試分析,該微流體裝置具有裝 置數位記憶體; 寡核苷酸點樣機器人’其係用於點樣該經選擇之探針 至該微流體裝置上以形成該探針陣列,該寡核苷酸點樣機 器人具有控制微處理器以用於下載該規格資料至該裝置數 位記億體;及 裝置閱讀器,其係用於存取該裝置數位記憶體之規格 資料以分析來自該微流體裝置之雜交資料。 GSS001.2較佳地,該微流體裝置具有: 支持基板: 用於支持該經選擇之探針陣列之微系統技術(MST)層 :及 介於該MST層與該支持基板之間的CMOS電路,該 CMOS電路具有用於偵測該經選擇之探針陣列中探針雜交 之光感應器。 GSS001.3較佳地,該探針係螢光共振能量轉移(FRET) 探針。 GSS001.4較佳地,該裝置數位記憶體亦儲存用於獨特 -170- 201209402 識別該微流體裝置之裝置識別資料。 GSS001.5較佳地,該系統亦具有其中安裝該微流體裝 置之測試模組,該測試模組係經組構以用於在該裝置數位 記憶體與該閱讀器之間傳輸資料。 GSS00 1.6較佳地,該測試模組經由通用性串列匯流排 (USB)連接件連接該閱讀器。The oligonucleotide spotting robot is used as part of a cost-effective automated mass production environment. The loaded oligonucleotide spotting device is picked up by the robot, which places the oligonucleotide spotting device and instructs the device to eject the oligonucleotide into the hybridization chamber of the LOC device to be spotted. Automating the data provided by the oligonucleotide spotting robot includes automated computer controlled distribution of the oligonucleotide to the hybridization chamber of the LOC device to be spotted, reading and storing in the oligonucleotide spotting The specification of the oligonucleotide in the reservoir of the device, the specification of the oligonucleotide stored in the reservoir of the oligonucleotide spotting device, the alignment with the relevant database, and the storage of the oligonucleotide specification In the memory of the LOC device to be spotted, and transmitting the oligonucleotide specification to other departments of the automated manufacturing environment. The oligonucleotide spotting robot provides automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify the complexity of the automated manufacturing environment, increase the reliability of the automated manufacturing environment, and increase the Automating the manufacturing environment, increasing the security of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. In particular, the robot provides the low end LOC device size with the necessary high density spotting capabilities, thus allowing for this inexpensive inspection system. The data provided by the oligonucleotide spotting robot automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment. GSS 00 1.1 This aspect of the invention provides a system for microarray spotting and genetic analysis, the system comprising: -169- 201209402 a container containing a probe for hybridization to different target nucleic acid sequences; In each of the integrated circuits of the container, each of the integrated circuits has a container for storing probe specifications of probes in the container, and a microfluid for supporting a probe array selected from the container. a device, the selected probe corresponding to a desired genetic test analysis, the microfluidic device having a device digital memory; an oligonucleotide spotting robot configured to spot the selected probe to the microfluidic device Forming the probe array, the oligonucleotide spotting robot having a control microprocessor for downloading the specification data to the device digital device; and a device reader for accessing the device digital device The specification data of the memory is used to analyze the hybridization data from the microfluidic device. GSS001.2 Preferably, the microfluidic device has: a support substrate: a microsystem technology (MST) layer for supporting the selected probe array: and a CMOS circuit interposed between the MST layer and the support substrate The CMOS circuit has a light sensor for detecting probe hybridization in the selected probe array. GSS001.3 Preferably, the probe is a fluorescence resonance energy transfer (FRET) probe. GSS001.4 Preferably, the device digital memory also stores device identification data for uniquely identifying the microfluidic device from -170 to 201209402. Preferably, the system also has a test module in which the microfluidic device is mounted, the test module being configured for transferring data between the device digital memory and the reader. GSS00 1.6 Preferably, the test module is coupled to the reader via a universal serial bus (USB) connector.
GSS00 1.7較佳地,在使用期間,該CMOS電路係由該 閱讀器經由該USB連接件供電。 GSS00 1.8較佳地,該測試模組亦具有用於自該已經與 任何標的核酸序列雜交之FRET探針產生螢光發射之激發 光源。 GSS00 1.9較佳地,在使用期間,該激發光在該光感應 器活化之前熄滅,且該CMOS電路係經組構以在該激發光 源去活化之後的一段預定時間延遲活化該光感應器。 GSS001.10 較佳地,該光感應器與該探針之距離小 φ 於249微米。 GSS001.il 較佳地,該系統亦具有用於接受含有該 標的核酸序列之生物樣品之容器,該容器係與該微流體裝 置之入口流體相通。 GSS001.12 較佳地,該微流體裝置具有自該入口至 該終點感應器之流體流路,該流體流路係經組構以藉由毛 細作用攜帶該標的核酸序列與該探針陣列接觸。 GSS001.13 較佳地,該微流體裝置具有多個處理該 生物樣品所需之不同試劑之試劑貯器。 -171 - 201209402 GSS001.14 較佳地,各該容器數位記億體儲存識別 資料,該識別資料區分該用於點樣該微流體裝置之容器與 其他容器,該控制微處理器係經組構以下載該識別資料至 該將被點樣之微流體裝置之裝置數位記憶體。 GSS001.15 較佳地,該等容器各具有用於射出該探 針懸浮液之液滴至該微流體裝置上之液滴產生器。 GSS001.16 較佳地,該系統亦具有用於安裝該微流 體裝置以供該微流體裝置相對於該容器移動之安裝表面, 以使該控制微處理器控制該容器與該安裝部兩者以活化該 經選擇且移動至與該微流體裝置配準之容器的液滴產生器 〇 GSS001.17 較佳地,該系統亦具有照相機以光學回 饋由該控制微處理器選擇之容器與該微流體裝置之間的配 準。 GSS001.18 較佳地,儲存於該容器數位記億體及該 裝置數位記億體中之資料係經加密。 GSS001.1 9 較佳地,該液滴產生器係經組構以射出 體積小於6皮升之液滴。 GSS001.20 較佳地,該經選擇之探針陣列在小於 1500微米乘1500微米之面積包含超過1〇〇〇個探針。 該用於可變微陣列點樣及基因分析之系統提供自動化 、快速、簡單及低成本地彙總易於使用且不貴之應用特異 性/應用最佳化之檢測系統,該系統使用LOC裝置之庫、 寡核苷酸點樣裝置、用於裝載寡核苷酸點樣裝置之設備、 -172- 201209402 寡核苷酸點樣機器人及儲存於具有數位記億體之微量瓶中 之寡核苷酸探針之庫。所有從探針接受到LOC裝置點樣 之處理步驟皆爲自動化。 GSL001.1本發明之此態樣提供一種用於裝載試劑至微 流體裝置以供基因分析之系統,該系統包含: 含有試劑之容器,該試劑係用於在該微流體裝置中處 理生物樣品:GSS00 1.7 Preferably, during use, the CMOS circuit is powered by the reader via the USB connector. GSS00 1.8 Preferably, the test module also has an excitation source for generating a fluorescent emission from the FRET probe that has hybridized to any of the target nucleic acid sequences. GSS00 1.9 preferably, during use, extinguishes the excitation light prior to activation of the photosensor, and the CMOS circuit is configured to activate the photosensor for a predetermined period of time after deactivation of the excitation source. GSS001.10 Preferably, the distance between the light sensor and the probe is less than 249 microns. GSS001.il Preferably, the system also has a container for receiving a biological sample containing the nucleic acid sequence of the target, the container being in fluid communication with the inlet of the microfluidic device. GSS001.12 Preferably, the microfluidic device has a fluid flow path from the inlet to the endpoint sensor, the fluid flow path being configured to carry the target nucleic acid sequence into contact with the probe array by capillary action. GSS001.13 Preferably, the microfluidic device has a plurality of reagent reservoirs for processing the different reagents required for the biological sample. -171 - 201209402 GSS001.14 Preferably, each of the container digits stores identification data, the identification data distinguishes the container for the microfluidic device from the other containers, and the control microprocessor is configured The identification data is downloaded to the device digital memory of the microfluidic device to be spotted. GSS 001.15 Preferably, the containers each have a droplet generator for ejecting droplets of the probe suspension onto the microfluidic device. GSS001.16 Preferably, the system also has a mounting surface for mounting the microfluidic device for movement of the microfluidic device relative to the container such that the control microprocessor controls both the container and the mounting portion Activating the droplet generator 〇GSS001.17 that is selected and moved to a container that is registered with the microfluidic device. Preferably, the system also has a camera for optically feeding back the container selected by the control microprocessor and the microfluid Registration between devices. GSS001.18 Preferably, the data stored in the container and the digits of the device are encrypted. GSS 001.1 9 Preferably, the droplet generator is configured to emit droplets having a volume of less than 6 picoliters. GSS 001.20 Preferably, the selected probe array comprises more than one probe in an area of less than 1500 microns by 1500 microns. The system for variable microarray spotting and gene analysis provides an automated, fast, simple, and low-cost collection of easy-to-use and inexpensive application-specific/application-optimized detection systems that use a library of LOC devices, Oligonucleotide spotting device, device for loading oligonucleotide spotting device, -172-201209402 oligonucleotide spotting robot and oligonucleotide probe stored in micro-bottle with digital counting body The library of needles. All processing steps from the probe to the LOC device are automated. GSL001.1 This aspect of the invention provides a system for loading reagents into a microfluidic device for genetic analysis, the system comprising: a container containing a reagent for processing a biological sample in the microfluidic device:
分別固定於各該容器之積體電路,各該積體電路具有 儲存關於在該容器中之試劑的試劑規格資料之容器數位記 憶體; 用於進行所欲基因測試分析之微流體裝置,該微流體 裝置具有裝置數位記憶體; 用於裝載選擇試劑至該微流體裝置之試劑分配設備, 該試劑分配設備具有用於存取該容器數位記憶體及傳送該 規格資料至該裝置數位記憶體之控制微處理器;及 裝置閱讀器,其係用於存取該裝置數位記憶體之試劑 規格資料以分析來自該微流體裝置之測試分析結果。 GSL001.2較佳地,該微流體裝置具有: 支持基板; 用於支持寡核苷酸探針陣列之微系統技術(MST)層, 該寡核苷酸探針陣列係用於與該生物樣品中之標的核酸序 列雜交;及 介於該MST層與該支持基板之間的CMOS電路’該 CMOS電路具有用於偵測該探針陣列中之雜交之光感應器 -173- 201209402 GSL001.3較佳地,該探針係螢光共振能量轉移(FRET) 探針。 GSL001.4較佳地,該裝置數位記憶體亦儲存用於獨特 識別該微流體裝置之裝置識別資料。 GSL0 0 1.5較佳地,該系統亦具有其中安裝該微流體裝 置之測試模組,該測試模組係經組構以用於在該裝置數位 記憶體與該閱讀器之間傳輸資料。 G S LO 0 1.6較佳地,該測試模組經由通用性串列匯流排 (USB)連接件連接該閱讀器。 GSL001.7較佳地,在使用期間,該CMOS電路係由該 閱讀器經由該USB連接件供電。 GSL001 .8較佳地,該測試模組亦具有用於自該已經與 任何標的核酸序列雜交之FRET探針產生螢光發射之激發 光源。 GSL00 1.9較佳地,在使用期間,該激發光在該光感應 器活化之前熄滅,且該CMOS電路係經組構以在該激發光 源去活化之後的一段預定時間延遲活化該光感應器。 GSL001 .1 0 較佳地,該光感應器與該探針之距離小 於249微米。 GSL001.il 較佳地,該系統亦具有用於接受含有該 標的核酸序列之生物樣品之容器,該容器係與該微流體裝 置之入口流體相通。 GSL001 .12 較佳地,該微流體裝置具有自該入口至 -174- 201209402 該終點感應器之流體流路,該流體流路係經組構以藉由毛 細作用攜帶該標的核酸序列與該探針陣列接觸。 GSL001.13 較佳地,該微流體裝置具有多個處理該 生物樣品所需之試劑之試劑貯器。Each of the integrated circuits is fixed to an integrated circuit of each of the containers, each of the integrated circuits having a container digital memory for storing reagent specifications of the reagents in the container; and a microfluidic device for performing the desired gene test analysis, the micro-fluid device The fluid device has a device digital memory; a reagent dispensing device for loading a selection reagent to the microfluidic device, the reagent dispensing device having control for accessing the container digital memory and transmitting the specification data to the device digital memory a microprocessor; and a device reader for accessing reagent specification data of the device digital memory to analyze test analysis results from the microfluidic device. GSL001.2 Preferably, the microfluidic device has: a support substrate; a microsystem technology (MST) layer for supporting an oligonucleotide probe array, the oligonucleotide probe array being used for the biological sample a hybridization of the nucleic acid sequence in the target; and a CMOS circuit between the MST layer and the support substrate. The CMOS circuit has a light sensor for detecting hybridization in the probe array - 173 - 201209402 GSL001.3 Preferably, the probe is a fluorescence resonance energy transfer (FRET) probe. Preferably, the device digital memory also stores device identification data for uniquely identifying the microfluidic device. GSL0 0 1.5 Preferably, the system also has a test module in which the microfluidic device is mounted, the test module being configured for transferring data between the device digital memory and the reader. G S LO 0 1.6 Preferably, the test module is coupled to the reader via a universal serial bus (USB) connector. GSL001.7 Preferably, during use, the CMOS circuit is powered by the reader via the USB connector. GSL001.8 Preferably, the test module also has an excitation source for generating a fluorescent emission from the FRET probe that has hybridized to any of the target nucleic acid sequences. Preferably, GSL 00 1.9 extinguishes the excitation light prior to activation of the light sensor during use, and the CMOS circuit is configured to activate the light sensor for a predetermined period of time after deactivation of the excitation light source. GSL001 .1 0 Preferably, the distance of the light sensor from the probe is less than 249 microns. GSL001.il Preferably, the system also has a container for receiving a biological sample containing the nucleic acid sequence of the target, the container being in fluid communication with the inlet of the microfluidic device. GSL001.12 Preferably, the microfluidic device has a fluid flow path from the inlet to the end point sensor of -174-201209402, the fluid flow path being configured to carry the target nucleic acid sequence by capillary action and the probe Needle array contact. GSL001.13 Preferably, the microfluidic device has a plurality of reagent reservoirs for processing the reagents required for the biological sample.
GSL001.14 較佳地,各該容器數位記憶體儲存識別 資料’該識別資料區分該用於點樣該微流體裝置之容器與 其他容器,該控制微處理器係經組構以下載該識別資料至 該將被點樣之微流體裝置之裝置數位記憶體。 GSL001.15 較佳地,該容器各具有液滴產生器以用 於射出該試劑液滴至該試劑貯器。 GSL001.16 較佳地,該系統亦具有用於安裝該微流 體裝置以供該微流體裝置相對於該容器移動之安裝表面, 以使該控制微處理器控制該容器與該安裝部兩者以活化該 經選擇且移動至與該微流體裝置配準之容器的液滴產生器 GSL001.17 較佳地,該系統亦具有照相機以光學回 饋由該控制微處理器選擇之容器與該微流體裝置之間的配 準。 GSL001.18 較佳地,儲存於該容器數位記憶體及該 裝置數位記憶體中之資料係經加密。 GSL001.19 較佳地,該液滴產生器係經組構以射出 體積小於6皮升之液滴。 GSL001.20 較佳地,該探針陣列在小於1500微米 乘1500微米之面積包含超過1000個探針。 -175- 201209402 該用於可變LOC裝置試劑裝載及基因分析之系統提 供自動化、快速、簡單及低成本地彙總易於使用且不貴之 應用特異性/應用最佳化之檢測系統,該系統使用LOC裝 置之庫、試劑分配設備及儲存於具有數位記憶體之微量瓶 中之試劑之庫。所有從試劑接受到LOC裝置裝載之處理 步驟皆爲自動化。GSL001.14 Preferably, each of the container digital memory stores identification data 'the identification data distinguishes the container for the microfluidic device from the other container, and the control microprocessor is configured to download the identification data. To the device digital memory of the microfluidic device to be spotted. GSL001.15 Preferably, the containers each have a droplet generator for ejecting the reagent droplets to the reagent reservoir. GSL001.16 Preferably, the system also has a mounting surface for mounting the microfluidic device for movement of the microfluidic device relative to the container such that the control microprocessor controls both the container and the mounting portion Activating the droplet generator GSL001.17 that is selected and moved to a container that is registered with the microfluidic device. Preferably, the system also has a camera for optically feeding back the container selected by the control microprocessor and the microfluidic device Registration between. GSL001.18 Preferably, the data stored in the container digital memory and the device's digital memory is encrypted. GSL001.19 Preferably, the droplet generator is configured to emit droplets having a volume of less than 6 picoliters. GSL001.20 Preferably, the probe array contains more than 1000 probes in an area of less than 1500 microns by 1500 microns. -175- 201209402 This system for reagent loading and genetic analysis of variable LOC devices provides an automated, fast, simple and cost-effective way to aggregate easy-to-use and inexpensive application-specific/application-optimized detection systems using LOC A library of devices, reagent dispensing devices, and libraries of reagents stored in micro vials with digital memory. All processing steps from reagent receipt to LOC device loading are automated.
GCA001 .1 本發明之此態樣提供一種用於分配試劑 及裝載寡核苷酸點樣裝置之設備,該設備包含: 多個試劑瓶,各該瓶皆有液滴分配器; 多個寡核苷酸瓶,各該瓶皆有液滴分配器; 安裝表面,其係用於可拆卸地安裝微流體裝置以供該 微流體裝置相對於該試劑瓶移動及可拆卸地安裝寡核苷酸 點樣裝置;及GCA001.1 This aspect of the invention provides an apparatus for dispensing a reagent and loading an oligonucleotide spotting device, the apparatus comprising: a plurality of reagent bottles each having a droplet dispenser; a plurality of oligonucleotides a glycoside acid bottle, each of which has a droplet dispenser; a mounting surface for detachably mounting the microfluidic device for movement and detachable mounting of the oligonucleotide point relative to the reagent bottle Sample device; and
控制處理器,其係用於操作控制該試劑瓶及寡核苷酸 瓶及該安裝表面相對於該試劑瓶及寡核苷酸瓶之移動;其 中 該控制處理器係經組構以啓動任何該液滴分配器、移 動該微流體裝置以配準該試劑瓶及移動該寡核苷酸點樣裝 置以配準該寡核苷酸瓶。 GCA001.2 較佳地,各該試劑瓶具有儲存試劑規格 資料之積體電路,各該寡核苷酸瓶具有儲存寡核苷酸規格 資料之積體電路,且該控制處理器係經組構以下載該試劑 規格資料至該微流體裝置中之數位記憶體及下載該寡核苷 酸規格資料至該寡核苷酸點樣裝置中之數位記憶體。 -176- 201209402 GCA001 .3 較佳地,該設備亦具有照相機以光學回 饋由該控制處理器選擇之瓶與該微流體裝置之間的配準。 GCA001.4 較佳地,該試劑瓶及該寡核苷酸瓶係體 積介於282微升至400微升之微量瓶。 GCA001.5 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器。a control processor for operatively controlling movement of the reagent vial and the oligonucleotide vial and the mounting surface relative to the reagent vial and the oligonucleotide vial; wherein the control processor is configured to initiate any of the A droplet dispenser, moving the microfluidic device to register the reagent bottle and moving the oligonucleotide spotting device to register the oligonucleotide vial. GCA001.2 Preferably, each of the reagent bottles has an integrated circuit for storing reagent specification data, and each of the oligonucleotide bottles has an integrated circuit for storing oligonucleotide specification data, and the control processor is configured The reagent specification data is downloaded to the digital memory in the microfluidic device and the oligonucleotide specification data is downloaded to the digital memory in the oligonucleotide spotting device. -176- 201209402 GCA001 .3 Preferably, the apparatus also has a camera to optically feedback the registration between the bottle selected by the control processor and the microfluidic device. GCA001.4 Preferably, the reagent bottle and the oligonucleotide bottle have a volume of between 282 microliters and 400 microliters. GCA001.5 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor.
GCA001.6 較佳地,各該微量瓶具有電接觸件以接 收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GCA001.7 較佳地,該設備亦具有架,其中該等微 量瓶係可拆卸地安裝於該架上以供機電控制該等微量瓶。 GCA001.8 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GCA001.9 較佳地,該液滴分配器具有壓電致動器 GCA001.10 較佳地,該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。 GCA001.11 較佳地,該微流體裝置係供生物樣品基 因分析之LOC裝置,該LOC裝置具有聚合酶連鎖反應 (PCR)部,該試劑清單具有下列一或多項:水、聚合酶、 引子、緩衝液、抗凝血劑、去氧核糖核苷三磷酸(dNTP)、 溶解試劑、連接酶、連接子及限制酶。 GCA001.12 較佳地,該設備亦具有用於施放膜至該 •177- 201209402 LOC裝置以覆蓋在外部表面形成之試劑貯器之設 GCA001.1 3 較佳地,該LOC裝置係建造 上之LOC裝置之陣列之一,該平台係經組構以 安裝該矽晶圓以裝載試劑至該陣列之所有LOC裝 GCA001.14 較佳地,該LOC裝置係安裝 路板(PCB)上之LOC裝置之陣列之一,該平台係 可拆卸地安裝該PCB以裝載試劑至該陣列之所窄 置。, 該經組合之試劑分配設備與用於裝載寡核苷 置之設備係用來作爲具成本效益之自動化大量製 之一部分,其被用來分配包含於試劑微量瓶中之 微流體裝置之試劑貯器及分配包含於寡核苷酸微 寡核苷酸至該寡核苷酸點樣裝置之寡核苷酸貯器 備所提供之資料自動化包括自動化電腦控制之分 至該微流體裝置之試劑貯器及分配該寡核苷酸至 酸點樣裝置之寡核苷酸貯器、檢查儲存於該微量 體中之試劑資料以與必須被裝載於該微流體裝置 格清單比對、檢查儲存於該微量瓶之記憶體中之 資料以與必須被裝載於該寡核苷酸點樣裝置之寡 格清單比對、儲存該試劑資料於該微流體裝置之 ,及儲存該寡核苷酸資料於該寡核苷酸點樣裝置 中〇 該經組合之5式劑分配設備與用於裝載寡核苷 置之設備提供自動化且體積及位置精準之試劑及 施。 於矽晶圓 可拆卸地 置。 在印刷電 經組構以 r l〇c 裝 酸點樣裝 造環境中 試劑至該 量瓶中之 。由該設 配該試劑 該寡核苷 瓶之記憶 之試劑規 寡核苷酸 核苷酸規 記憶體中 之記憶體 酸點樣裝 寡核苷酸 -178- 201209402 分配技術,以簡化該自動化製造環境之複雜性、增加該自 動化製造環境之可靠性、增加該自動化製造環境之保全性 、增加該自動化製造環境之安全性及減少該自動化製造環 境之成本。 由該經組合之試劑分配設備與用於裝載寡核苷酸點樣 裝置之設備所提供之資料自動化提供在該自動化製造環境 中自動化、安全、保全且不貴之資料監測及管理技術。GCA 01.6 Preferably, each of the micro vials has electrical contacts for receiving a firing pulse for the droplet dispenser and allows the control processor to interrogate the integrated circuit. GCA001.7 Preferably, the apparatus also has a shelf, wherein the microcapsules are removably mounted to the shelf for electromechanical control of the micro vials. GCA001.8 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes that extend parallel to one of the orthogonal axes. GCA001.9 Preferably, the droplet dispenser has a piezoelectric actuator GCA001.10. Preferably, the droplet dispenser is configured to emit droplets having a volume between 50 picoliters and 150 picoliters. GCA001.11 Preferably, the microfluidic device is a LOC device for gene analysis of biological samples, the LOC device having a polymerase chain reaction (PCR) portion, the reagent list having one or more of the following: water, polymerase, primer, Buffers, anticoagulants, deoxyribonucleoside triphosphates (dNTPs), lysing reagents, ligases, linkers and restriction enzymes. GCA001.12 Preferably, the apparatus also has a GCA001.1 3 for applying a film to the 177-201209402 LOC device to cover the reagent reservoir formed on the outer surface. Preferably, the LOC device is constructed. One of the arrays of LOC devices that are configured to mount the wafer to load reagents to all LOCs of the array. GCA001.14 Preferably, the LOC device is a LOC device mounted on a circuit board (PCB) In one of the arrays, the platform is detachably mounted to load reagents to the array. The combined reagent dispensing device and apparatus for loading oligonucleosides are used as part of a cost-effective automated mass system for dispensing reagent reservoirs of microfluidic devices contained in reagent microbottles And the data provided by the oligonucleotide reservoir containing the oligonucleotide microoligonucleotide to the oligonucleotide spotting device, including automated computer control, to the reagent storage of the microfluidic device And dispensing the oligonucleotide to the oligonucleotide reservoir of the acid spotting device, inspecting the reagent data stored in the microbody to be compared with the list of microfluidic devices that must be loaded, and inspecting and storing The data in the memory of the micro vial is compared with the list of oligonucleotides that must be loaded on the oligonucleotide spotting device, the reagent data is stored in the microfluidic device, and the oligonucleotide data is stored in the In the oligonucleotide spotting device, the combined 5 agent dispensing device and the device for loading the oligonucleoside are provided with an automated and volumetric and positionally accurate reagent and application. The 矽 wafer is detachable. The reagent is placed in the measuring flask in an acid-spotting environment in the printed electrostructure. The memory acid spot-like oligonucleotide-178-201209402 distribution technique in the memory of the oligodeoxynucleotide in the memory of the oligonucleoside bottle is provided to simplify the automated manufacturing The complexity of the environment, increasing the reliability of the automated manufacturing environment, increasing the security of the automated manufacturing environment, increasing the safety of the automated manufacturing environment, and reducing the cost of the automated manufacturing environment. The data provided by the combined reagent dispensing device and the equipment used to load the oligonucleotide spotting device automatically provides automated, secure, secure and inexpensive data monitoring and management techniques in the automated manufacturing environment.
GCA002.1 本發明之此態樣提供一種用於分配試劑 、裝載寡核苷酸點樣裝置及點樣寡核苷酸探針之設備,該 設備包含: 多個試劑瓶,各該瓶皆有液滴分配器; 多個寡核苷酸瓶,各該瓶皆有液滴分配器; 安裝表面,其係用於可拆卸地安裝微流體裝置以供該 微流體裝置相對於該試劑瓶移動及可拆卸地安裝寡核苷酸 點樣裝置; 夾具’其係用於可拆卸地安裝該寡核苷酸點樣裝置鄰 近安裝表面;及 控制處理器,其係用於操作控制該試劑及寡核苷酸瓶 、安裝於夾具上之寡核苷酸點樣裝置及該安裝表面相對於 該試劑及寡核苷酸瓶之移動,及該寡核苷酸點樣裝置;其 中, 該控制處理器係經組構以啓動任何該液滴分配器、移 動該微流體裝置以配準該試劑瓶及移動該寡核苷酸點樣裝 置以配準該寡核苷酸瓶。 -179- 201209402 GCA002.2 較佳地’該控制處理器係經組構以操作 在該夾具上之寡核苷酸點樣裝置,以點樣寡核苷酸探針至 在該安裝表面上之微流體裝置。 GCA002.3 較佳地’各該試劑瓶具有儲存試劑規格 資料之積體電路,各該寡核苷酸瓶具有儲存寡核苷酸規格 資料之積體電路,且該控制處理器係經組構以下載該試劑 規格資料至該微流體裝置中之數位記憶體及下載該寡核苷 酸規格資料至該寡核苷酸點樣裝置中之數位記憶體。 GCA002.4 較佳地,該設備亦具有照相機以光學回 饋由該控制處理器選擇之瓶與該微流體裝置之間的配準。 GCA002.5 較佳地,該試劑瓶及該寡核苷酸瓶係體 積介於282微升至400微升之微量瓶。 GCA002.6 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器》 GCA002.7 較佳地,各該微量瓶具有電接觸件以接 收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GCA002.8 較佳地,該設備亦具有架,其中該等微 量瓶係可拆卸地安裝於該架上以供機電控制該等微量瓶。 GCA002.9 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GCA002.1 0 較佳地,該液滴分配器具有壓電致動器 -180- 201209402 GCA002.1 1 較佳地,該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。 GCA002.1 2 較佳地,該微流體裝置係供生物樣品基 因分析之LOC裝置’該LOC裝置具有聚合酶連鎖反應 (PCR)部,該試劑清單具有下列一或多項··水、聚合酶、 引子' 緩衝液、抗凝血劑、去氧核糖核苷三磷酸(dNTP)、 溶解試劑、連接酶、連接子及限制酶。GCA002.1 This aspect of the invention provides an apparatus for dispensing reagents, loading oligonucleotide spotting devices, and spotting oligonucleotide probes, the apparatus comprising: a plurality of reagent bottles, each of which has a droplet dispenser; a plurality of oligonucleotide bottles each having a droplet dispenser; a mounting surface for detachably mounting the microfluidic device for movement of the microfluidic device relative to the reagent bottle Removably mounting an oligonucleotide spotting device; a fixture for detachably mounting the oligonucleotide spotting device adjacent to the mounting surface; and a control processor for operating the reagent and the oligo a glycoside bottle, an oligonucleotide spotting device mounted on the jig, and movement of the mounting surface relative to the reagent and the oligonucleotide bottle, and the oligonucleotide spotting device; wherein the control processor is The tissue is configured to activate any of the droplet dispensers, move the microfluidic device to register the reagent bottle, and move the oligonucleotide spotting device to register the oligonucleotide vial. -179- 201209402 GCA002.2 Preferably the control processor is configured to operate an oligonucleotide spotting device on the fixture to spot the oligonucleotide probe onto the mounting surface Microfluidic device. GCA002.3 preferably 'each of the reagent bottles has an integrated circuit for storing reagent specification data, each of the oligonucleotide bottles has an integrated circuit for storing oligonucleotide specification data, and the control processor is configured The reagent specification data is downloaded to the digital memory in the microfluidic device and the oligonucleotide specification data is downloaded to the digital memory in the oligonucleotide spotting device. GCA002.4 Preferably, the apparatus also has a camera to optically feedback the registration between the bottle selected by the control processor and the microfluidic device. GCA002.5 Preferably, the reagent bottle and the oligonucleotide bottle have a volume of between 282 microliters and 400 microliters. GCA002.6 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor, GCA002.7, preferably each The micro vial has an electrical contact to receive a firing pulse for the droplet dispenser and allows the control processor to interrogate the integrated circuit. GCA002.8 Preferably, the apparatus also has a shelf, wherein the microcapsules are removably mounted to the shelf for electromechanical control of the micro vials. GCA002.9 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes that extend parallel to one of the orthogonal axes. GCA002.1 0 Preferably, the droplet dispenser has a piezoelectric actuator - 180 - 201209402 GCA002.1 1 Preferably, the droplet dispenser is configured to have an ejection volume of between 50 picoliters and 150 The droplets of the skin rise. GCA002.1 2 Preferably, the microfluidic device is a LOC device for gene analysis of biological samples. The LOC device has a polymerase chain reaction (PCR) portion, and the reagent list has one or more of the following: water, polymerase, Primer' buffer, anticoagulant, deoxyribonucleoside triphosphate (dNTP), lysing reagent, ligase, linker and restriction enzyme.
GCA002.1 3 較佳地,該設備亦具有用於施放膜至該 LOC裝置以覆蓋在外部表面形成之試劑貯器之設施。 GCA002.14 較佳地’該LOC裝置係建造於矽晶圓 上之LOC裝置之陣列之一,該平台係經組構以可拆卸地 安裝該矽晶圓以裝載試劑至該陣列之所有LOC裝置。 GCA002.1 5 較佳地,該LOC裝置係安裝在印刷電 路板(PCB)上之LOC裝置之陣列之一,該平台係經組構以 可拆卸地安裝該PCB以裝載試劑至該陣列之所有LOC裝 置。 GCA002.1 6 較佳地,該寡核苷酸點樣裝置具有用於 包含寡核苷酸探針之貯器陣列及射出器陣列,且該LOC 裝置具有用於接受寡核苷酸探針之雜交室陣列,該探針具 有與欲在生物樣品中檢測之標的核酸序列互補之核酸序列 ’該雜交室陣列係經組構以容納生物樣品預定分析所需之 完整的寡核苷酸探針系列,該貯器陣列係經組構以包含由 該LOC裝置所進行之預定分析所需之完整的寡核苷酸探 針系列,該控制處理器係經組構以操作射出器正確地點樣 -181 - 201209402 該雜交室陣列及下載來自各貯器之寡核苷酸探 料與定位由各貯器點樣之雜交室的陣列位置資 聯。 GCA002.1 7 較佳地,各該射出器具有多 於包含來自該對應貯器之寡核苷酸探針之懸浮 多個致動器,該致動器之一分別對應各該噴嘴 器自該室經由該對應噴嘴射出液滴,該控制處 構以個別操作各該致動器。 GCA002.1 8 較佳地,該控制處理器係經 該射出器陣列以高於每平方毫米8個探針點樣 寡核苷酸點樣在該LOC裝置上。 GCA002.1 9 較佳地,該控制處理器係經 該射出器陣列以高於每平方毫米60個探針點 該寡核苷酸點樣在該LOC裝置上》 GCA002.20 較佳地,該控制處理器係經 射出器陣列,該射出器陣列以介於每平方毫米 點樣至每平方毫米1 5 00個探針點樣之密度將 樣在LOC裝置上。 該經組合之用於試劑分配、裝載寡核苷酸 與寡核苷酸點樣之設備係用來作爲具成本效益 量製造環境中之一部分,其被用來分配包含於 中之試劑至該微流體裝置之試劑貯器、分配包 酸微量瓶中之寡核苷酸至該寡核苷酸點樣裝置 貯器,及射出該寡核苷酸至該將被點樣之表面 針之規格資 料之間的關 個噴嘴、用 液體之室及 以使該致動 理器係經組 組構以操作 之密度將該 組構以操作 樣之密度將 組構以操作 500個探針 寡核苷酸點 點樣裝置及 之自動化大 試劑微量瓶 含於寡核苷 之寡核苷酸 上。由該設 -182- 201209402GCA002.1 3 Preferably, the apparatus also has means for applying a film to the LOC device to cover a reagent reservoir formed on the outer surface. GCA002.14 preferably 'the LOC device is one of an array of LOC devices built on a germanium wafer, the platform being configured to removably mount the germanium wafer to load reagents to all LOC devices of the array . GCA002.1 5 Preferably, the LOC device is one of an array of LOC devices mounted on a printed circuit board (PCB) that is configured to detachably mount the PCB to load reagents to all of the array LOC device. GCA002.1 6 Preferably, the oligonucleotide spotting device has a reservoir array and an emitter array for comprising an oligonucleotide probe, and the LOC device has an acceptor for receiving an oligonucleotide probe An array of hybridization chambers having a nucleic acid sequence complementary to a target nucleic acid sequence to be detected in a biological sample. The hybridization chamber array is organized to accommodate a complete array of oligonucleotide probes required for predetermined analysis of biological samples. The reservoir array is configured to contain a complete series of oligonucleotide probes required for predetermined analysis by the LOC device, the control processor being configured to operate the correct location of the injector - 181 - 201209402 The hybrid chamber array and the oligonucleotide probes from each reservoir are downloaded and positioned in an array position of the hybridization chambers spotted by each reservoir. GCA002.1 7 Preferably, each of the injectors has more than a plurality of actuators comprising a plurality of oligonucleotide probes from the corresponding reservoir, one of the actuators corresponding to each of the nozzles The chamber ejects droplets via the corresponding nozzle, the control being configured to individually operate each of the actuators. GCA002.1 8 Preferably, the control processor is spotted on the LOC device via the array of emitters at 8 probe spotting oligonucleotides per square millimeter. GCA002.1 9 Preferably, the control processor is spotted on the LOC device via the array of emitters at 60 probe points per square millimeter." GCA002.20 Preferably, The control processor is passed through an array of emitters that are sampled on the LOC device at a density ranging from 1 square inch per square millimeter to 1 500 probe spots per square millimeter. The combined apparatus for reagent dispensing, loading of oligonucleotides and oligonucleotide spotting is used as part of a cost effective manufacturing environment for dispensing reagents contained therein to the micro a reagent reservoir of the fluid device, dispensing the oligonucleotide in the acid-packed micro-bottle to the oligonucleotide spotting device reservoir, and ejecting the oligonucleotide to the specification data of the surface needle to be spotted The nozzles, the chambers with liquids, and the densities of the actuators are organized to operate at a density that manipulates the fabric to manipulate 500 probe oligonucleotides. The spotting device and the automated large reagent micro vial are contained on the oligonucleotide of the oligonucleoside. By the design -182- 201209402
備所提供之資料自動化包括自動化電腦控制之分配該試劑 至該微流體裝置之試劑貯器、分配該寡核苷酸至該寡核苷 酸點樣裝置之寡核苷酸貯器、分配該寡核苷酸至該將被點 樣之表面上、檢查儲存於該微量瓶之記億體中之試劑資料 以與必須被裝載於該微流體裝置之試劑規格清單比對、檢 查儲存於該微量瓶之記憶體中之寡核苷酸資料以與必須被 裝載於該寡核苷酸點樣裝置之寡核苷酸規格清單比對、儲 存該試劑資料於該微流體裝置之記憶體中、儲存該寡核苷 酸規格於該將被點樣之裝置的記億體中,及傳送該試劑及 寡核苷酸規格至該自動化製造環境之其他部門。 該經組合之用於試劑分配、裝載寡核苷酸點樣裝置及 與寡核苷酸點樣之設備提供自動化、體積及位置精準、快 速且高密度之試劑分配及寡核苷酸點樣技術,以簡化該自 動化製造環境之複雜性、增加該自動化製造環境之可靠性 '增加該自動化製造環境之保全性、增加該自動化製造環 境之安全性及減少該自動化製造環境之成本。 由該經組合之用於試劑分配、裝載寡核苷酸點樣裝置 及與寡核苷酸點樣之設備所提供之資料自動化提供在該自 動化製造環境中自動化、安全、保全且不貴之資料監測及 管理技術。 GCA003 · 1 本發明之此態樣提供一種用於裝載寡核 苷酸點樣裝置及點樣寡核苷酸探針之設備,該設備包含: 多個寡核苷酸瓶,各該瓶皆有液滴分配器; 安裝表面,該安裝表面用於可拆卸地安裝寡核苷酸點 -183- 201209402 樣裝置: 夾具,其係用於可拆卸地安裝該寡核苷酸點樣裝置鄰 近安裝表面:及 控制處理器,該控制處理器用於操作控制該等寡核苷 酸瓶、安裝於夾具上之寡核苷酸點樣裝置及安裝表面相對 於寡核苷酸瓶之移動及寡核苷酸點樣裝置;其中, 該控制處理器係經組構以啓動該液滴分配器及移動該 寡核苷酸點樣裝置以配準寡核苷酸瓶。 GCA003.2 較佳地,該控制處理器係經組構以操作 在該夾具上之寡核苷酸點樣裝置,以點樣寡核苷酸探針至 在該安裝表面上之微流體裝置。 GCA003.3 較佳地,各該寡核苷酸瓶具有儲存寡核 苷酸規格資料之積體電路,且該控制處理器係經組構以下 載該寡核苷酸規格資料至該寡核苷酸點樣裝置中.之數位記 憶體》 GCA003.4 較佳地,該設備亦具有照相機以光學回 饋由該控制處理器選擇之瓶與該寡核苷酸點樣裝置之間的 配準。 GCA003.5 較佳地,該寡核苷酸瓶係體積介於282 微升至400微升之微量瓶。 GCA003.6 較佳地,各該微量瓶之積體電路具有獨 特識別符以供個別識別各該微量瓶,該獨特識別符係經傳 送至該控制處理器。 GCA003.7 較佳地,各該微量瓶具有電接觸件以接 -184- 201209402 收用於該液滴分配器之啓動脈衝,並允許該控制處理器詢 答該積體電路。 GCA003.8 較佳地,該設備亦具有架,其中該等微 量瓶係可拆卸地安裝於該架上以供機電控制該等微量瓶。 GCA003.9 較佳地,該安裝表面係經組構以沿著二 個正交軸移動之平台,該架平行延伸於該正交軸之一。 GCA003.1 0 較佳地,該液滴分配器具有壓電致動器The data provided by the preparation includes automated computer controlled dispensing of the reagent to the reagent reservoir of the microfluidic device, dispensing of the oligonucleotide to the oligonucleotide reservoir of the oligonucleotide spotting device, and dispensing of the oligo Nucleotide to the surface to be spotted, and the reagent data stored in the micro-bottle of the micro-bottle is checked for comparison with the reagent specification list that must be loaded on the microfluidic device, and the sample is stored in the micro-bottle. The oligonucleotide data in the memory is aligned with the oligonucleotide specification list that must be loaded on the oligonucleotide spotting device, and the reagent data is stored in the memory of the microfluidic device, and the storage is performed. The oligonucleotides are specified in the cells of the device to be spotted, and the reagents and oligonucleotides are delivered to other departments of the automated manufacturing environment. The combined reagent dispensing, loading oligonucleotide spotting device and oligonucleotide spotting device provide automated, volumetric and positional accurate, fast and high density reagent dispensing and oligonucleotide spotting techniques To simplify the complexity of the automated manufacturing environment and increase the reliability of the automated manufacturing environment 'increasing the security of the automated manufacturing environment, increasing the safety of the automated manufacturing environment and reducing the cost of the automated manufacturing environment. Automated, secure, secure, and inexpensive data monitoring in the automated manufacturing environment is automated by the combined data provided for reagent dispensing, loading oligonucleotide spotting devices, and oligonucleotide spotting equipment And management technology. GCA003 · 1 This aspect of the invention provides an apparatus for loading an oligonucleotide spotting device and a spotting oligonucleotide probe, the device comprising: a plurality of oligonucleotide bottles, each of which has a droplet dispenser; a mounting surface for detachably mounting an oligonucleotide point-183-201209402-like device: a fixture for detachably mounting the oligonucleotide spotting device adjacent to the mounting surface And a control processor for operating the oligonucleotide vial, the oligonucleotide spotting device mounted on the fixture, and the movement of the mounting surface relative to the oligonucleotide vial and the oligonucleotide a spotting device; wherein the control processor is configured to activate the drop dispenser and move the oligonucleotide spotting device to register the oligonucleotide vial. GCA003.2 Preferably, the control processor is configured to operate an oligonucleotide spotting device on the fixture to spot the oligonucleotide probe to the microfluidic device on the mounting surface. GCA003.3 Preferably, each of the oligonucleotide vials has an integrated circuit for storing oligonucleotide specification data, and the control processor is configured to download the oligonucleotide specification data to the oligonucleoside Digital Memory in Acid Spotting Devices GCA003.4 Preferably, the device also has a camera to optically feedback the registration between the bottle selected by the control processor and the oligonucleotide spotting device. GCA003.5 Preferably, the oligonucleotide bottle is in a micro vial having a volume ranging from 282 microliters to 400 microliters. GCA003.6 Preferably, the integrated circuit of each of the micro vials has a unique identifier for individually identifying each of the micro vials, the unique identifier being transmitted to the control processor. GCA003.7 Preferably, each of the micro vials has an electrical contact for receiving a start pulse of the drop dispenser from -184 to 201209402 and allows the control processor to interrogate the integrated circuit. GCA003.8 Preferably, the apparatus also has a rack, wherein the micro vials are removably mounted to the rack for electromechanical control of the micro vials. GCA003.9 Preferably, the mounting surface is a platform that is configured to move along two orthogonal axes that extend parallel to one of the orthogonal axes. GCA003.1 0 Preferably, the droplet dispenser has a piezoelectric actuator
GCA003.il 較佳地,該液滴分配器係經組構以射出 體積介於50皮升至150皮升之液滴。 GCA003.1 2 較佳地,該設備亦具有含有用於處理生 物樣本之試劑之試劑瓶,其中該微流體裝置係供生物樣品 基因分析之LOC裝置,該LOC裝置具有聚合酶連鎖反應 (PCR)部且該試劑清單具有下列一或多項:水、聚合酶、 引子、緩衝液、抗凝血劑' 去氧核糖核苷三磷酸(dNTP)、 φ 溶解試劑、連接酶、連接子及限制酶》 GCA003.1 3 較佳地,該設備亦具有用於施放膜至該 LOC裝置以覆蓋在外部表面形成之試劑貯器之設施。 GCA003.14 較佳地,該LOC裝置係建造於矽晶圓 上之LOC裝置之陣列之一,該平台係經組構以可拆卸地 安裝該矽晶圓以裝載試劑至該陣列之所有LOC裝置。 GCA003.1 5 較佳地,該LOC裝置係安裝在印刷電 路板(PCB)上之LOC裝置之陣列之一,該平台係經組構以 可拆卸地安裝該PCB以裝載試劑至該陣列之所有LOC裝 -185- 201209402 置。 GCA003.1 6 較佳地,該寡核苷酸點樣裝置具有用於 包含寡核苷酸探針之貯器陣列及射出器陣列,且該LOC 裝置具有用於接受寡核苷酸探針之雜交室陣列,該探針具 有與欲在生物樣品中檢測之標的核酸序列互補之核酸序列 ,該雜交室陣列係經組構以容納生物樣品預定分析所需之 完整的寡核苷酸探針系列,該貯器陣列係經組構以包含由 該LOC裝置所進行之預定分析所需之完整的寡核苷酸探 針系列,該控制處理器係經組構以操作射出器正確地點樣 該雜交室陣列及下載來自各貯器之寡核苷酸探針之規格資 料與定位由各貯器點樣之雜交室的陣列位置資料之間的關 聯。 GCA003.1 7 較佳地,各該射出器具有多個噴嘴、用 於包含來自該對應貯器之寡核苷酸探針之懸浮液體之室及 多個致動器,該致動器之一分別對應各該噴嘴以使該致動 器自該室經由該對應噴嘴射出液滴,該控制處理器係經組 構以個別操作各該致動器。 GCA003.1 8 較佳地,該控制處理器係經組構以操作 該射出器陣列以高於每平方毫米8個探針點樣之密度將該 寡核苷酸點樣在該LOC裝置上。 GCA003.1 9 較佳地,該控制處理器係經組構以操作 該射出器陣列以高於每平方毫米60個探針點樣之密度將 該寡核苷酸點樣在該LOC裝置上。 GCA003.20 較佳地,該控制處理器係經組構以操作 -186- 201209402 射出器陣列,該射出器陣列以介於每平方毫米5 00個探蚕十 點樣至每平方毫米1 5〇0個探針點樣之密度將寡核苷酸0占 樣在LOC裝置上。GCA003.il Preferably, the droplet dispenser is configured to eject droplets having a volume between 50 picoliters and 150 picoliters. GCA003.1 2 Preferably, the apparatus also has a reagent bottle containing a reagent for processing a biological sample, wherein the microfluidic device is a LOC device for genetic analysis of a biological sample, the LOC device having a polymerase chain reaction (PCR) And the reagent list has one or more of the following: water, polymerase, primer, buffer, anticoagulant 'deoxyribonucleoside triphosphate (dNTP), φ lysing reagent, ligase, linker and restriction enzymes》 GCA003.1 3 Preferably, the apparatus also has means for applying a film to the LOC device to cover a reagent reservoir formed on the outer surface. GCA003.14 Preferably, the LOC device is one of an array of LOC devices built on a germanium wafer, the platform being configured to removably mount the germanium wafer to load reagents to all LOC devices of the array . GCA003.1 5 Preferably, the LOC device is one of an array of LOC devices mounted on a printed circuit board (PCB) that is configured to detachably mount the PCB to load reagents to all of the array LOC installed -185- 201209402 set. GCA003.1 6 Preferably, the oligonucleotide spotting device has a reservoir array and an emitter array for comprising an oligonucleotide probe, and the LOC device has an acceptor for receiving an oligonucleotide probe A hybridization chamber array having a nucleic acid sequence complementary to a target nucleic acid sequence to be detected in a biological sample, the hybridization chamber array being organized to accommodate a complete array of oligonucleotide probes required for predetermined analysis of the biological sample The reservoir array is configured to contain a complete series of oligonucleotide probes required for predetermined analysis by the LOC device, the control processor being configured to operate the injector in the correct location for the hybridization The chamber array and the specification data of the oligonucleotide probes from each reservoir are downloaded and the correlation between the array position data of the hybridization chambers spotted by each reservoir is located. GCA003.1 7 Preferably, each of the injectors has a plurality of nozzles, a chamber for suspending liquid comprising oligonucleotide probes from the corresponding reservoir, and a plurality of actuators, one of the actuators Each of the nozzles is adapted to cause the actuator to eject droplets from the chamber via the corresponding nozzle, and the control processor is configured to individually operate each of the actuators. GCA003.1 8 Preferably, the control processor is configured to operate the array of emitters to spot the oligonucleotide on the LOC device at a density greater than 8 probe spots per square millimeter. GCA003.1 9 Preferably, the control processor is configured to operate the array of emitters to spot the oligonucleotide on the LOC device at a density greater than 60 probe spots per square millimeter. GCA003.20 Preferably, the control processor is configured to operate an array of -186-201209402 injectors with a range of 10,000 probes per square millimeter to 10 points per square millimeter. The density of 0 probe spottings occupies oligonucleotide 0 on the LOC device.
該經組合之用於裝載寡核苷酸點樣裝置及與寡核苷酸 點樣之設備係用來作爲具成本效益之自動化大量製造環境 中之一部分,其被用來分配包含於寡核苷酸微量瓶中之寡 核苷酸至該寡核苷酸點樣裝置之寡核苷酸貯器及射出該寡 核苷酸至該將被點樣之表面上。由該設備所提供之資料自 動化包括自動化電腦控制之分配該寡核苷酸至該寡核苷酸 點樣裝置之寡核苷酸貯器、分配該寡核苷酸至該將被點樣 之表面上、檢查儲存於該微量瓶之記憶體中的寡核苷酸資 料以與必須被裝載至該寡核苷酸點樣裝置之寡核苷酸的規 格清單比對、儲存該寡核苷酸規格於該將被點樣之裝置之 記憶體中,及傳送該寡核苷酸規格至該自動化製造環境之 其他部門。 該經組合之用於裝載寡核苷酸點樣裝置及與寡核苷酸 點樣之設備提供自動化、體積及位置精準、快速且高密度 之寡核苷酸點樣技術,以簡化該自動化製造環境之複雜性 、增加該自動化製造環境之可靠性、增加該自動化製造環 境之保全性、增加該自動化製造環境之安全性及減少該自 動化製造環境之成本。 由該經組合之用於裝載寡核苷酸點樣裝置及與寡核苷 酸點樣之設備所提供之資料自動化提供在該自動化製造環 境中自動化、安全、保全且不貴之資料監測及管理技術。 -187- 201209402 【實施方式】 本發明之較佳實施態樣之詳細說明 總論 此總論指明倂有本發明之實施態樣之分子診斷系統之 主要組件》系統結構及操作之完整細節於以下說明書中討 論。 參照圖1、2、3、1 04及1 05,系統具有下列最重要的 組件: 測試模組1 〇及1 1之大小如同普通之u S B隨身碟, 其可被非常便宜地生產。測試模組1 〇及1 1各包含通常爲 晶片上實驗室(LOC)裝置30形式之微流體裝置,該裝置預 載試劑及通常1 〇〇〇個以上之探針以用於分子診斷分析(見 圖1及1 04)。圖1槪示之測試模組1 0使用螢光基底之偵 測技術以識別目標分子,然而圖1 04之測試模組1 1使用 電化學發光基底之偵測技術。LOC裝置30具有用於螢光 或電化學發光檢測之整合式光感應器44(於以下詳細描述) 。測試模組1 〇及1 1均使用標準微型-USB接頭1 4以供電 、資料及控制,二種測試模組均具有印刷電路板(PC B)5 7 及外部電源供應電容器3 2及電感器1 5。測試模組1 0及 1 1均爲僅供單次使用,經大量生產及配銷爲可立即使用之 無菌包裝。 外殼13具有可接受生物樣品之大容器24及可移除之 無菌密封膠帶22,該膠帶較佳地具有低黏度黏著劑,以於 -188- 201209402 使用前覆蓋大容器。具有膜防護件410之膜密封件408形 成部份外殼1 3以減少測試模組內之濕度降低,同時在小 氣壓變動時提供釋壓作用。膜防護件410保護膜密封件 408免於損傷》 測試模組閱讀器1 2經由微型-USB埠1 6供電給測試 模組1 〇或1 1。測試模組閱讀器1 2可爲許多不同形式,該 形式之選擇於後描述。圖1、3及104中所示之閱讀器12 φ 版本爲智慧型手機之實施態樣。此閱讀器1 2之方塊圖係 示於圖3。處理器42執行來自程式儲存器43的應用軟體 。處理器42亦與顯示螢幕18及使用者界面(UI)觸控螢幕 17及按鍵19、蜂巢式無線電21、無線網路連接23,以及 衛星導航系統25介接。蜂巢式無線電21及無線網路連接 2 3係用於通訊。衛星導航系統2 5係用於以地點資料更新 流行病學資料庫。該地點資料可選擇性地經由觸控螢幕i 7 或按鍵19手動輸入。資料儲存器27儲存基因及診斷資訊 φ 、測試結果、患者資訊、用於識別各探針及彼之陣列位置 之分析及探針資料。資料儲存器27及程式儲存器43可共 享於共同記憶體設備。測試模組閱讀器1 2中安裝的應用 軟體提供結果分析與其他測試及診斷資訊。 要進行診斷測試時,將測試模組1 〇(或測試模組1 i )插 入至測試模組閱讀器12上的微型- USB埠16。向後撕起無 菌密封膠帶22並將生物樣品(呈液體形式)裝載至樣品大容 器24中。按下開始按鍵20經由應用軟體開始測試。樣品 流進LOC裝置30而該裝置之機載分析對該樣品進行萃取 -189- 201209402 、培養、擴增及以預合成的雜交-反應性寡核苷酸探針與 該樣品核酸(標靶)雜交。以測試模組1 0而言(其使用螢光 基底之檢測),該等探針係經螢光標記且由安裝於殼1 3中 之LED 26提供必要之激發光以誘發經雜交之探針的螢光 發射(見圖1及2)。以測試模組Π而言(其使用電化學發 光(ECL)檢測),LOC裝置30裝載ECL探針(如上述)而 LED 26並非產生發光發射所必需。事實上由電極8 60及 870提供激發電流(見圖1〇5)。該發射(螢光或發光)係由整 合至各LOC裝置之CMOS電路的光感應器44檢測。該檢 測信號經過放大,並轉換成數位輸出以供測試模組閱讀器 12分析。該閱讀器接著顯示結果。 該資料可在當地儲存及/或上傳至包含病患記錄之網 路伺服器。將測試模組1 0或1 1自測試模組閱讀器1 2移 除並加以適當處理。 圖1、3及104顯示設計成行動電話/智慧型手機28 之測試模組閱讀器1 2。其他形式之測試模組閱讀器可爲膝 上型電腦/筆電101、專用閱讀器103、電子書閱讀器107 、平板電腦109或桌上型電腦105以用於醫院、私人診所 或實驗室(見圖106)。該閱讀器可介接一些額外之應用程 式,諸如病患記錄、帳務、線上資料庫及多使用者環境。 其亦可與一些當地或遠端周邊設備介接,諸如印表機及病 患智慧卡。 參照圖1 07,由測試模組1 〇產生之資料可透過閱讀器 1 2及網路1 25用於更新流行病學資料主機系統1 1 1所儲存 -190- 201209402The combined apparatus for loading oligonucleotide spotting devices and spotting oligonucleotides is used as part of a cost-effective automated mass production environment for distribution to oligonucleosides The oligonucleotide in the acid microbottle is transferred to the oligonucleotide reservoir of the oligonucleotide spotting device and the oligonucleotide is emitted onto the surface to be spotted. Automating the data provided by the device includes automated computer controlled dispensing of the oligonucleotide to the oligonucleotide reservoir of the oligonucleotide spotting device, dispensing the oligonucleotide to the surface to be spotted Aligning and checking the oligonucleotide data stored in the memory of the micro-bottle to compare with the specification list of the oligonucleotides that must be loaded into the oligonucleotide spotting device, and storing the oligonucleotide specification In the memory of the device to be spotted, and transmitting the oligonucleotide specifications to other departments of the automated manufacturing environment. The combined oligonucleotide spotting device and oligonucleotide spotting device provide automated, volumetric and positionally accurate, fast and high density oligonucleotide spotting techniques to simplify automated manufacturing The complexity of the environment, increasing the reliability of the automated manufacturing environment, increasing the security of the automated manufacturing environment, increasing the safety of the automated manufacturing environment, and reducing the cost of the automated manufacturing environment. Automated, secure, secure, and inexpensive data monitoring and management techniques in the automated manufacturing environment, automated by the combined data provided for loading oligonucleotide spotting devices and oligonucleotide spotted devices . -187-201209402 [Embodiment] DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS OF THE INVENTION The general description of the main components of the molecular diagnostic system of the embodiment of the present invention is described in detail below. Discussed in the manual. Referring to Figures 1, 2, 3, 104 and 010, the system has the following most important components: The test modules 1 and 1 are the same size as the conventional u S B flash drive, which can be produced very cheaply. Test modules 1 and 1 each comprise a microfluidic device, typically in the form of a lab-on-lab (LOC) device 30, which preloads reagents and typically more than one probe for molecular diagnostic analysis ( See Figures 1 and 1 04). The test module 10 illustrated in Figure 1 uses a fluorescent substrate detection technique to identify the target molecule, whereas the test module 11 of Figure 104 uses the detection technique of the electrochemiluminescence substrate. The LOC device 30 has an integrated light sensor 44 (described in detail below) for fluorescence or electrochemiluminescence detection. Test modules 1 and 1 1 use standard micro-USB connector 14 for power supply, data and control. Both test modules have printed circuit board (PC B) 5 7 and external power supply capacitor 3 2 and inductor. 1 5. Test modules 1 0 and 1 1 are for single use only, and are mass-produced and distributed for aseptic packaging for immediate use. The outer casing 13 has a large container 24 that accepts a biological sample and a removable sterile sealing tape 22, which preferably has a low viscosity adhesive to cover the large container before use -188-201209402. The membrane seal 408 having the membrane shield 410 forms part of the outer casing 13 to reduce the reduction in humidity within the test module while providing a pressure relief when the pressure changes. Membrane guard 410 protects the membrane seal 408 from damage. Test module reader 1 2 supplies power to the test module 1 〇 or 1 1 via the micro-USB 埠1 6 . The test module reader 12 can be in many different forms, the choice of which is described later. The reader 12 φ version shown in Figures 1, 3 and 104 is an implementation of the smart phone. The block diagram of this reader 12 is shown in Figure 3. The processor 42 executes the application software from the program storage 43. The processor 42 is also interfaced with a display screen 18 and a user interface (UI) touch screen 17 and buttons 19, a cellular radio 21, a wireless network connection 23, and a satellite navigation system 25. Honeycomb radio 21 and wireless internet connection 2 3 are used for communication. The satellite navigation system 25 is used to update the epidemiological database with location information. The location data can optionally be manually entered via touch screen i 7 or button 19. The data store 27 stores genetic and diagnostic information φ, test results, patient information, analysis and probe data for identifying the position of each probe and its array. The data store 27 and the program store 43 can be shared by a common memory device. The application software installed in the Test Module Reader 1 2 provides results analysis and other test and diagnostic information. To perform a diagnostic test, the test module 1 〇 (or test module 1 i ) is inserted into the micro-USB port 16 on the test module reader 12. The sterile sealing tape 22 is torn back and the biological sample (in liquid form) is loaded into the sample large container 24. Press the start button 20 to start the test via the application software. The sample flows into the LOC device 30 and the device is subjected to on-board analysis to extract -189-201209402, culture, amplification and pre-synthesized hybrid-reactive oligonucleotide probes with the sample nucleic acid (target) Hybrid. In the case of test module 10 (which uses detection of a fluorescent substrate), the probes are fluorescently labeled and provide the necessary excitation light by LEDs 26 mounted in the housing 13 to induce hybridized probes. Fluorescent emission (see Figures 1 and 2). In the case of a test module (which uses electrochemical luminescence (ECL) detection), the LOC device 30 is loaded with an ECL probe (as described above) and the LED 26 is not required to produce luminescent emissions. In fact, the excitation current is supplied by electrodes 8 60 and 870 (see Fig. 1〇5). The emission (fluorescence or illumination) is detected by a light sensor 44 integrated into the CMOS circuitry of each LOC device. The detection signal is amplified and converted to a digital output for analysis by the test module reader 12. The reader then displays the results. This information can be stored locally and/or uploaded to a network server containing patient records. The test module 10 or 1 1 is removed from the test module reader 1 2 and processed appropriately. 1, 3 and 104 show a test module reader 12 designed as a mobile phone/smartphone 28. Other forms of test module readers may be laptops/notebooks 101, dedicated readers 103, e-book readers 107, tablets 109 or desktop computers 105 for use in hospitals, private clinics or laboratories ( See Figure 106). The reader can interface with additional applications such as patient records, accounting, online databases and multi-user environments. It can also interface with some local or remote peripherals, such as printers and patient smart cards. Referring to FIG. 1 07, the data generated by the test module 1 can be used to update the epidemiological data host system 1 1 1 through the reader 1 2 and the network 1 25 -190- 201209402
之流行病學資料庫、基因資料主機系統1 1 3所儲存之基因 資料庫、電子化健康記錄(EHR)主機系統1 15所儲存之電 子化健康記錄、電子化醫療記錄(EMR)主機系統121所儲 存之電子化醫療記錄,以及個人健康記錄(PHR)主機系統 123所儲存之個人健康記錄。相反地,在流行病學資料主 機系統1 1 1所儲存之流行病學資料、在基因資料主機系統 113所儲存之基因資料、在電子化健康記錄(EHR)主機系 統1 1 5所儲存之電子化健康記錄、在電子化醫療記錄 (EMR)主機系統121所儲存之電子化醫療記錄,以及在個 人健康記錄(PHR)主機系統123所儲存之個人健康記錄可 被用於經由網路125及閱讀器12以更新測試模組10之 LOC 30中的數位記億體。 參照圖1、2、1 04及1 05,行動電話組態中之閱讀器 1 2使用電池電力。該行動電話閱讀器包含所有預載之測試 及診斷資訊。資料亦可經由一些無線或接觸界面下載或上 φ 傳以致能與週邊裝置、電腦或線上伺服器通訊。微型USB 埠16被用於連接電腦或主要電力供應以供電池充電。 圖77顯示用於僅需要特定標靶之陽性或陰性測試結 果之測試模組1 0的實施態樣,諸如用於測試人是否受到 例如A型流行性感冒病毒H1N1之感染。只需要爲特定目 的建造之僅USB電力/指示器模組47。不需要其他閱讀器 或應用軟體。在僅USB電力/指示器模組47上之指示器 45顯示陽性或陰性結果。此組態非常適合大量篩檢。 其他該系統可能提供之物件可包括含有供預處理特定 -191 - 201209402 樣品之試劑的試管及用於樣品收集之抹刀及刺血針。圖7 7 顯示爲求方便而併有加載彈簧之伸縮式刺血針3 9 0及刺血 針釋放鍵3 92之測試模組的實施態樣。衛星電話可於偏遠 地區使用。 測試模組電子學The epidemiological database, the genetic data host system 1 1 3 stored in the gene database, the electronic health record (EHR) host system 1 15 stored electronic health record, electronic medical record (EMR) host system 121 The stored electronic medical record, as well as the personal health record stored by the personal health record (PHR) host system 123. Conversely, the epidemiological data stored in the epidemiological data host system 1 1 1 , the genetic data stored in the genetic data host system 113, and the electronic data stored in the electronic health record (EHR) host system 1 1 5 The health record, the electronic medical record stored in the electronic medical record (EMR) host system 121, and the personal health record stored in the personal health record (PHR) host system 123 can be used to read and read via the network 125 The device 12 updates the digits in the LOC 30 of the test module 10 to count the body. Referring to Figures 1, 2, 104 and 010, the reader in the mobile phone configuration uses battery power. The mobile phone reader contains all pre-loaded test and diagnostic information. Data can also be downloaded or φ transmitted via some wireless or contact interface to communicate with peripheral devices, computers or online servers. The micro USB port 16 is used to connect a computer or a primary power supply for charging the battery. Figure 77 shows an embodiment of a test module 10 for a positive or negative test result requiring only a particular target, such as for testing whether a human is infected with, for example, influenza A virus H1N1. Only the USB power/indicator module 47 built for a particular purpose is required. No other readers or application software is required. The indicator 45 on the USB power/indicator module 47 alone displays a positive or negative result. This configuration is ideal for large screenings. Other items that may be provided by the system may include test tubes containing reagents for pretreatment of specific -191 - 201209402 samples and spatula and lancets for sample collection. Figure 7 7 shows an embodiment of a test module for the convenience of a spring-loaded telescopic lancet 309 and a lancet release button 3 92. Satellite phones can be used in remote areas. Test module electronics
圖2和1 05分別爲測試模組1 0和1 1中之電子組件的 方塊圖。整合於LOC裝置30中之CMOS電路具有USB裝 置驅動器36、控制器34、USB相容性LED驅動器29、時 鐘3 3、電源調節器3 1、RAM 3 8和程式及資料快閃記憶體 40。這些組件提供對整個測試模組1 0或1 1包括光感應器 44、溫度感測器170、液體感測器174和各種加熱器152 、154、182' 234以及相關驅動器37及39和暫存器35及 4 1之控制及記憶。只有LED 26 (以測試模組1 0爲例)、外 部電源電容器32和微型USB接頭14位在LOC裝置30外 部。LOC裝置30包括用於與這些外部組件連接之銲墊。 RAM 38和程式及資料快閃記憶體40具有超過1 000個探 針之應用軟體和診斷及測試資訊(快閃/保全儲存,例如經 由加密)。在經設計以供ECL檢測之測試模組1 1中,該測 試模組11不含LED 26(見圖104和105)。資料係由LOC 裝置3 0加密以供保全儲存及與外部裝置安全通訊。該 LOC裝置30裝載有電化學發光探針,該等雜交室各具有 —對ECL激發電極860和870。 許多類型之測試模組1 〇係經製造爲數種測試形式以 -192- 201209402 供現貨之用。不同試驗形式之間的差異在於機載分析(〇n board assay)之試劑和探針》 可利用此系統快速鑑識之一些感染性疾病實例包括: •流行性感冒-流行性感冒病毒A、B、C、傳染性鮭 魚貧血病毒(Isavirus)、托高土病毒(Thogotovirus) •肺炎-呼吸道融合病毒(RSV)、腺病毒、間質肺炎病 毒、肺炎雙球菌、金黃色葡萄球菌Figures 2 and 105 are block diagrams of the electronic components in test modules 10 and 1 respectively. The CMOS circuit integrated in the LOC device 30 has a USB device driver 36, a controller 34, a USB compatible LED driver 29, a clock 3 3, a power conditioner 3 1 , a RAM 3 8 and a program and data flash memory 40. These components provide for the entire test module 10 or 1 1 including a light sensor 44, a temperature sensor 170, a liquid sensor 174 and various heaters 152, 154, 182' 234 and associated drivers 37 and 39 and a temporary storage Control and memory of devices 35 and 41. Only LED 26 (with test module 10 as an example), external power capacitor 32 and micro USB connector 14 are located outside of LOC device 30. LOC device 30 includes pads for connection to these external components. The RAM 38 and the program and data flash memory 40 have application software and diagnostic and test information (flash/security storage, such as encryption) of more than 1 000 probes. In the test module 1 1 designed for ECL detection, the test module 11 does not contain LEDs 26 (see Figures 104 and 105). The data is encrypted by the LOC device 30 for secure storage and secure communication with external devices. The LOC device 30 is loaded with electrochemiluminescent probes each having a pair of ECL excitation electrodes 860 and 870. Many types of test modules 1 are manufactured in several test formats for use in stock from -192 to 201209402. The difference between the different test formats is that the reagents and probes of the boardn board assay can be quickly identified by this system. Some examples of infectious diseases include: • Influenza-influenza virus A, B, C, infectious salmon anemia virus (Isavirus), tohogovirus (Thogotovirus) • pneumonia-respiratory fusion virus (RSV), adenovirus, interstitial pneumonia virus, pneumococci, Staphylococcus aureus
•結核病·結核分枝桿菌、牛型分枝桿菌、非洲分枝 桿菌、卡氏分枝桿菌和田鼠分枝桿菌 •惡性瘧原蟲、弓漿蟲和其他寄生性原蟲病 •傷寒-傷寒桿菌 •依波拉病毒 •人類免疫不全病毒(HIV) •登革熱-黃熱病毒 •肝炎(A到E) •醫源性感染-例如難養芽孢梭菌、抗萬古黴素腸球 菌以及抗藥性金黃色葡萄球菌 •單純皰疹病毒(HSV) •巨細胞病毒(CMV) •愛彼斯坦-巴爾病毒(EBV) •腦炎-曰本腦炎病毒、章地埔拉病毒 •百日咳-百日咳菌 •麻疼-副黏液病毒 •腦膜炎-肺炎鏈球菌和腦膜炎奈瑟球菌(Neisseria -193- 201209402 meningitidis) •炭疽病-炭疽桿菌 可利用此系統鑑識之一些基因疾病實例包括: •囊腫性纖維化 •血友病 4 •鐮狀細胞貧血病 •黑矇性白癡病• Tuberculosis · Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium africana, Mycobacterium vaccae and Mycobacterium vaccae • Plasmodium falciparum, Toxoplasma gondii and other parasitic protozoa • Typhoid-cold typhoid • Ebola virus • Human immunodeficiency virus (HIV) • Dengue fever – Yellow fever virus • Hepatitis (A to E) • Iatrogenic infections – such as Clostridium difficile, vancomycin-resistant enterococci and drug-resistant golden yellow Staphylococcus • Herpes simplex virus (HSV) • Cytomegalovirus (CMV) • Epstein-Barr virus (EBV) • Encephalitis – Sputum encephalitis virus, Zhangdipula virus • Pertussis- pertussis • Hemp - Paramyxovirus • Meningitis - Streptococcus pneumoniae and Neisseria meningitidis (Neisseria -193- 201209402 meningitidis) • Examples of some genetic diseases that anthrax - anthrax can use this system to identify include: • Cystic fibrosis • Blood Friendship 4 • Sickle cell anemia • Black Mongolian idiot
•血色素沉著症 •腦動脈病 •克隆氏病 •多囊性腎臟病 •先天性心臟病 •蕾特氏症 由該診斷系統鑑別之少數癌症實例包括:• Hemochromatosis • Cerebral artery disease • Crohn's disease • Polycystic kidney disease • Congenital heart disease • Rett's disease A few examples of cancer identified by this diagnostic system include:
•卵巢癌 •結腸癌 •多發性內分泌腫瘤 •視網膜胚細胞瘤 •透克氏症(Turcot syndrome) 上述清單並不完整,該診斷系統可經組態以利用核酸 和蛋白質體分析來檢測更多樣化之疾病及狀況。 系統組件之詳細結構 LOC裝置 -194- 201209402• Ovarian cancer • Colon cancer • Multiple endocrine neoplasms • Retinal blastoma • Turcot syndrome The above list is not complete and the diagnostic system can be configured to detect more samples using nucleic acid and proteomic analysis Diseases and conditions. Detailed structure of system components LOC device -194- 201209402
LOC裝置30係該診斷系統之核心。該裝置在微流體 平台上快速地進行核酸基底分子診斷分析之四個主要步驟 ’即樣品準備、核酸萃取、核酸擴增和檢測。該L Ο C裝 置亦具有選擇性用途’並將詳述於下。如上述討論,測試 模組1 〇及1 1可採取許多不同組態以檢測不同的標靶。同 樣地,LO C裝置3 0亦可針對所關注之標靶以打造各種不 同之實施例。其中一種形式之LOC裝置30係用於螢光檢 測全血樣品中之病原體的標靶核酸序列之L Ο C裝置3 0 1。 爲了闡述之目的’ LOC裝置301的結構和操作現參照圖4 至26及27至57加以詳細說明。 圖4係LOC裝置3 01之結構之代表圖式。爲了方便 起見,顯示於圖4的處理階段係以相應於實施該處理階段 之LOC裝置301的功能部之元件符號表示。與核酸基底 分子診斷分析之各個主要步驟有關的處理階段亦被顯示: 樣品輸入及製備288、萃取2 90、培養291、擴增2 92及檢 φ 測294。LOC裝置301之各種貯器、室、閥及其他組件將 於以下更仔細的描述。 圖5係LOC裝置301之透視圖。該裝置係利用高容 積CMOS和MST(微系統技術)製造技術製造。LOC裝置 3 0 1之分層構造係以圖1 2之示意性(非按比例)部分剖面圖 闡述。該LOC裝置301具有支持COMS + MST晶片48之 矽基板84,該晶片包含CMOS電路86和MST層87並有 覆蓋MST層87之上蓋46。爲了本專利說明書之目的,術 語「MST層j係指以各種試劑處理樣品之結構和層之集合。 -195- \\ 201209402 因此,這些結構和組件係經組構以定義具有特徵尺寸之流 動路徑,該特徵尺寸將支持以毛細作用驅動與處理階段之 樣品的物理特性類似之液體的流動。有鑑於此,該MS T 層和組件通常利用表面微機械加工技術及/或立體微機械 加工技術製造。然而,其他製造方法亦可生產尺寸適用於 毛細驅動流及處理非常少量樣品之結構和組件。在本說明 書中描述之特定實施例顯示該MST層係由CMOS電路86 所支持之結構及主動組件,但不具有上蓋46之特徵。然 而,熟此技藝者將理解該MST層不需要其下之CMOS或 甚至其上之上蓋即可處理樣品。 顯示於下列圖式之LOC裝置的整體尺寸爲1 760微米 X5824微米。當然,爲不同應用所製造之LOC裝置可具有 不同的尺寸。 圖6顯示MST層87之特徵,其與上蓋之特徵重疊。 顯示於圖6中之AA至AD、AG及AH區分別放大於圖13 、14、35、56、55及67,並於以下詳細說明以充分了解 該LOC裝置301內之各個結構。圖7至10獨立顯示上蓋 46之特徵,而圖11獨立顯示CMOS + MST裝置48之結構 分層結構 圖12和22以圖解說明CMOS + MST裝置48、上蓋46 及二者之間流體交互作用之分層結構。該些圖式爲了闡述 之目的而未依比例繪製。圖12爲通過樣品入口 68之截面 -196- 201209402 示意圖,圖22爲通過貯器54之截面示意圖。圖12清楚 顯示,CMOS + MST裝置48具有支持CMOS電路86之矽 基板84,該CMOS電路86操作其上之MST層87內之主 動元件。鈍化層88密封及保護CMOS層86以免流經MST 層8 7之液體流入。 液體分別流經上蓋層46及MST通道層100中之上蓋The LOC device 30 is the heart of the diagnostic system. The device rapidly performs the four major steps of molecular diagnostic analysis of nucleic acid substrates on a microfluidic platform, namely sample preparation, nucleic acid extraction, nucleic acid amplification and detection. The L Ο C device also has a selective use' and will be described in detail below. As discussed above, test modules 1 and 11 can take many different configurations to detect different targets. Similarly, the LO C device 30 can also be used to create a variety of different embodiments for the target of interest. One form of LOC device 30 is used for fluorescent detection of the L Ο C device 310 of the target nucleic acid sequence of the pathogen in a whole blood sample. For the purpose of explanation, the structure and operation of the LOC device 301 will now be described in detail with reference to Figs. 4 to 26 and 27 to 57. Figure 4 is a representation of the structure of the LOC device 301. For the sake of convenience, the processing stages shown in Fig. 4 are denoted by the component symbols corresponding to the functional portions of the LOC device 301 that implements the processing stage. The processing stages associated with each of the major steps in the molecular diagnostic analysis of the nucleic acid substrate are also shown: sample input and preparation 288, extraction 2 90, culture 291, amplification 2 92 and detection φ 294. The various reservoirs, chambers, valves and other components of the LOC device 301 will be described more closely below. Figure 5 is a perspective view of the LOC device 301. The device is fabricated using high volume CMOS and MST (microsystem technology) fabrication techniques. The layered structure of the LOC device 301 is illustrated in a schematic (not to scale) partial cross-sectional view of Fig. 12. The LOC device 301 has a germanium substrate 84 that supports a COMS + MST wafer 48 that includes a CMOS circuit 86 and an MST layer 87 and has a cover 46 overlying the MST layer 87. For the purposes of this patent specification, the term "MST layer j" refers to a collection of structures and layers of a sample treated with various reagents. -195- \\ 201209402 Accordingly, these structures and components are organized to define flow paths having characteristic dimensions. The feature size will support the capillary action to drive the flow of liquid similar to the physical properties of the sample at the processing stage. In view of this, the MS T layer and assembly are typically fabricated using surface micromachining techniques and/or stereo micromachining techniques. However, other manufacturing methods can also produce structures and components that are sized for capillary drive flow and for processing very small samples. The specific embodiments described in this specification show that the MST layer is a structure and active component supported by CMOS circuitry 86. However, it does not have the features of the upper cover 46. However, those skilled in the art will understand that the MST layer does not require the CMOS or even the upper cover to process the sample. The overall size of the LOC device shown in the following figure is 1. 760 microns X 5824 microns. Of course, LOC devices manufactured for different applications can have different sizes. Figure 6 shows the MST layer 87 The features are overlapped with the features of the upper cover. The AA to AD, AG, and AH regions shown in Figure 6 are enlarged in Figures 13, 14, 35, 56, 55, and 67, respectively, and are described in detail below to fully understand the LOC device. The various structures within 301. Figures 7 through 10 show the features of the upper cover 46 independently, while Figure 11 shows the structural layered structure of the CMOS + MST device 48 independently. Figures 12 and 22 illustrate the CMOS + MST device 48, the upper cover 46, and both. The hierarchical structure of the interaction between the fluids is not drawn to scale for the purpose of illustration. Figure 12 is a schematic view through section 196-201209402 of sample inlet 68, and Figure 22 is a schematic cross-sectional view through reservoir 54. Figure 12 clearly shows that the CMOS + MST device 48 has a germanium substrate 84 supporting a CMOS circuit 86 that operates the active components within the MST layer 87 thereon. The passivation layer 88 seals and protects the CMOS layer 86 from flowing through the MST layer. The liquid of 8 7 flows in. The liquid flows through the upper cover layer 46 and the upper cover of the MST channel layer 100, respectively.
通道94及MST通道90兩者(見例如圖7及16)。細胞輸 送發生在製造於上蓋46中之較大通道94,而生化處理則 在較小之MST通道90進行。細胞輸送通道之大小係經設 計以便能輸送樣品中之細胞至M S T通道9 0中之預定部位 。輸送大於20微米之細胞(例如某些白血球)需要大於20 微米之通道尺寸,因此橫越液流之截面積必須大於400平 方微米。MS Τ通道特別是在不需要輸送細胞之l〇C中之 位置可以顯著地較小。 將理解的是’上蓋通道94和MST通道90爲通稱, 特定MST通道90亦可因其特定功能而被稱爲(例如)加熱 微通道或透析MST通道。MST通道90係藉由蝕刻沉積在 鈍化層88上之MST通道層1〇〇形成,並由光阻劑形成圖 案。該MST通道90被頂部層66封閉,該頂部層形成 CMOS + MST裝置Μ之頂部(如圖式方向所示)。 雖然有時以分開之層顯示,但該上蓋通道層80和貯 器層78係由單—材料片形成。當然,該片材料亦可爲非 單一性。該片材料之兩面被蝕刻以形成上蓋通道層與 貯器層78 ’在上蓋通道層8〇中蝕刻出上蓋通道94,在貯 -197- 201209402 器層7 8中蝕刻出貯器5 4、5 6、5 8、6 0和6 2。或者,該貯 器和上蓋通道係由微模塑法形成。蝕刻和微模塑技術皆被 用來製造具有橫越流體之截面積最大20,000平方微米且 最小8平方微米之通道。 針對LOC裝置中之不同位置’可以選擇各種適當之 橫越流體之通道截面積。當通道中容納大量樣品或具有大 組分之樣品時,最大20,000平方微米之截面積(例如在厚 度100微米之層中寬度爲200微米之通道)係爲適當。當 通道中容納少量液體或無大細胞存在之混合物時’較佳之 橫越流體之截面積係非常小。 下密封層64封閉上蓋通道94,上密封層82封閉貯器 54 、 56 、 58 、 60 和 62 » 五個貯器54、56、58、60和62預載特定分析之試劑 。於此描述之實施例中,該等貯器預載下列試劑,但可輕 易地更換爲其他試劑: •貯器54 :抗凝血劑,選擇性包括紅血球溶胞液 •貯器5 6 :溶胞試劑 •貯器5 8 :限制酶、接合酶和連接子(用於連接子引 發 PCR(見圖 76,節錄自 T. Stachan et al·,Human Molecular Genetics 2,Garland Science, NY and London, 1 999)) .貯器6 0 :擴增混合物(d N T P、引子、緩衝液),及 •貯器62 : DNA聚合酶。 上蓋46和CMOS+ MST層48經由在下密封64和頂部 層60中之對應開口呈流體相通。這些開口根據流體係自 198- 201209402 MST通道90流至上蓋通道94或相反而被稱爲上升口 96 及下降口 92。 LOC裝置操作Both channel 94 and MST channel 90 (see, for example, Figures 7 and 16). Cell transport occurs in the larger channel 94 made in the upper cap 46, while biochemical treatment takes place in the smaller MST channel 90. The size of the cell delivery channel is designed to deliver cells in the sample to a predetermined location in the M S T channel 90. Cells that transport greater than 20 microns (e.g., certain white blood cells) require channel sizes greater than 20 microns, so the cross-sectional area across the flow must be greater than 400 square microns. The MS Τ channel can be significantly smaller, especially in the case where it is not necessary to transport cells. It will be understood that the 'top cover channel 94 and the MST channel 90 are generic, and the particular MST channel 90 may also be referred to as, for example, a heated microchannel or a dialysis MST channel due to its particular function. The MST channel 90 is formed by etching a MST channel layer 1 deposited on the passivation layer 88 and patterned by a photoresist. The MST channel 90 is closed by a top layer 66 which forms the top of the CMOS + MST device (shown in the figure direction). Although sometimes shown in separate layers, the upper cover channel layer 80 and the reservoir layer 78 are formed from a single sheet of material. Of course, the sheet material can also be non-unitary. Both sides of the sheet material are etched to form an upper cover channel layer and a reservoir layer 78'. The upper cover channel 94 is etched in the upper cover channel layer 8 and the reservoirs 5 4, 5 are etched in the reservoir layer 197-201209402. 6, 5 8, 6 0 and 6 2. Alternatively, the reservoir and the upper cover channel are formed by micromolding. Both etching and micromolding techniques are used to fabricate channels having a cross-sectional area across the fluid of up to 20,000 square microns and a minimum of 8 square microns. A variety of suitable channel cross-sectional areas across the fluid can be selected for different locations in the LOC device. When a large number of samples or samples having a large composition are accommodated in the channel, a cross-sectional area of up to 20,000 square micrometers (e.g., a channel having a width of 200 micrometers in a layer having a thickness of 100 micrometers) is suitable. When the channel contains a small amount of liquid or a mixture free of large cells, the cross-sectional area of the traversing fluid is preferably very small. The lower sealing layer 64 encloses the upper cover passage 94, and the upper sealing layer 82 closes the reservoirs 54, 56, 58, 60 and 62 » The five reservoirs 54, 56, 58, 60 and 62 preload the reagents for the particular analysis. In the embodiments described herein, the reservoirs are preloaded with the following reagents, but can be easily replaced with other reagents: • Reservoir 54: Anticoagulant, optionally including red blood cell lysate • Reservoir 5 6 : Dissolving Cytokines • Reservoirs 5 8 : Restriction enzymes, ligases and linkers (for linker-primed PCR (see Figure 76, excerpt from T. Stachan et al, Human Molecular Genetics 2, Garland Science, NY and London, 1 999)) Reservoir 60: amplification mixture (d NTP, primer, buffer), and • reservoir 62: DNA polymerase. Upper cover 46 and CMOS+ MST layer 48 are in fluid communication via corresponding openings in lower seal 64 and top layer 60. These openings are referred to as riser 96 and descending port 92 depending on the flow system flowing from the 198-201209402 MST channel 90 to the upper cover channel 94 or vice versa. LOC device operation
LOC裝置301之操作以血液樣品中致病性DNA之分 析爲例逐步描述於下。當然,其他類型之生物或非生物流 體亦可利用適當之試劑、試驗規程、LOC變體和檢測系統 之組或組合加以分析。參考圖4,分析生物樣品主要分成 五個步驟,包含樣品輸入及製備288、核酸萃取290、核 酸培養291、核酸擴增292和檢測及分析294。 樣品輸入及製備步驟288涉及混合血液與抗凝血劑 116,接著在病原體透析部70分離病原體與白血球及紅血 球。如圖7及1 2所清楚顯示,血液樣品經由樣品入口 68 進入裝置。毛細作用吸引該血液樣品沿著上蓋通道94到 達貯器54。當樣品血液流開啓貯器54之表面張力閥1 1 8 時,抗凝血劑自貯器54釋出(見圖15和22)。抗凝血劑防 止血塊形成以免阻礙流動。 如圖22最佳顯示,抗凝血劑116係藉由毛細作用自 貯器54吸出及經由下降口 92進入MST通道90。下降口 92具有毛細起始特徵(CIF) 1〇2以控制彎液面之幾何形狀 以使彎液面不固定在下降口 92之邊緣。在上密封層82之 通氣孔1 22能讓空氣取代自貯器54被吸出之抗凝血劑1 1 6 圖22所示之MST通道90爲表面張力閥118之一部 -199- 201209402 分。抗凝血劑116充滿表面張力閥118,並固定彎液面 120於上升口 96之彎液面錨定器98。在使用前,彎液面 120保持固定於上升口 96處,因此抗凝血劑不會流入上蓋 通道94。當血液流經上蓋通道94到達上升口 96時,該彎 液面120被移除並將抗凝血劑吸入液流中。The operation of the LOC device 301 is described step by step as an example of the analysis of pathogenic DNA in a blood sample. Of course, other types of biological or non-biological fluids can also be analyzed using appropriate combinations of reagents, test protocols, LOC variants, and detection systems. Referring to Figure 4, the analytical biological sample is largely divided into five steps, including sample input and preparation 288, nucleic acid extraction 290, nucleic acid culture 291, nucleic acid amplification 292, and detection and analysis 294. The sample input and preparation step 288 involves mixing the blood with the anticoagulant 116, followed by separation of the pathogen from the pathogen dialysis unit 70 with white blood cells and red blood cells. As best seen in Figures 7 and 12, the blood sample enters the device via sample inlet 68. Capillary action draws the blood sample along the upper cover channel 94 to the reservoir 54. When the sample blood flow opens the surface tension valve 1 18 of the reservoir 54, the anticoagulant is released from the reservoir 54 (see Figures 15 and 22). Anticoagulants prevent clot formation from obstructing flow. As best shown in Fig. 22, the anticoagulant 116 is aspirated from the reservoir 54 by capillary action and enters the MST channel 90 via the descending port 92. The drop port 92 has a capillary initiation feature (CIF) 1〇2 to control the geometry of the meniscus such that the meniscus is not fixed at the edge of the drop port 92. The venting opening 12 in the upper sealing layer 82 allows air to replace the anticoagulant that is aspirated from the reservoir 54. The MST channel 90 shown in Figure 22 is part of the surface tension valve 118 -199 - 201209402. The anticoagulant 116 fills the surface tension valve 118 and secures the meniscus 120 to the meniscus anchor 98 of the riser 96. The meniscus 120 remains fixed to the riser 96 prior to use so that the anticoagulant does not flow into the upper cover passage 94. As blood flows through the upper cover passage 94 to the ascending port 96, the meniscus 120 is removed and the anticoagulant is drawn into the flow.
圖15至21顯示AE區,該AE區係圖13所示之AA 區之一部分。如圖15、16和17所示,表面張力閥118具 有三個分開之MST通道90,這些通道延伸於各別之下降 口 92及上升口 96之間。在表面張力閥中之MST通道90 之數目可以不同以改變試劑進入樣品混合物之流速。當樣 品混合物和試劑係藉由擴散混合時,流出貯器之流速決定 試劑在樣品流中之濃度。因此,各貯器之表面張力閥係經 組構以符合所需之試劑濃度。Figures 15 through 21 show the AE zone, which is part of the AA zone shown in Figure 13. As shown in Figures 15, 16 and 17, surface tension valve 118 has three separate MST passages 90 extending between respective lower and upper risers 92, 96. The number of MST channels 90 in the surface tension valve can vary to change the flow rate of reagent into the sample mixture. When the sample mixture and reagents are mixed by diffusion, the flow rate out of the reservoir determines the concentration of the reagent in the sample stream. Thus, the surface tension valves of each reservoir are configured to meet the desired reagent concentration.
血液進入病原體透析部70(見圖4和15),該處利用根 據預定閥値制定大小之孔陣列1 64自樣品濃縮標靶細胞。 小於閥値之細胞通過該孔,而大細胞不能通過該孔。非所 欲之細胞不是被孔陣列1 64阻擋之較大細胞就是通過該孔 之較小細胞,它們被轉導至廢料單元76,然而標靶細胞仍 爲分析之一部分。 在此處描述之病原體透析部70中,來自全血樣品之 病原體係經濃縮以供微生物DNA分析。孔陣列係由眾多3 微米直徑之孔1 64形成,該孔流體連通上蓋通道94中之 輸入流至標靶通道74。該3微米直徑之孔164和標靶通道 74中之透析上升孔168係由一系列透析MST通道204連 -200- 201209402 接(最佳顯示於圖15和21)。病原體之體積很小,因此可 通過3微米直徑之孔164並經由透析MST通道204充滿 標靶通道74。大於3微米之細胞諸如紅血球和白血球留在 上蓋46之廢料通道72中,該廢料通道通向廢料貯器76( 見圖7)。The blood enters the pathogen dialysis section 70 (see Figures 4 and 15) where the target cells are concentrated from the sample using a well-sized array of holes 1 64 according to a predetermined valve. Cells smaller than the valve plaque pass through the well, while large cells cannot pass through the well. The undesired cells are either larger cells that are blocked by well array 1 64 or smaller cells that pass through the well, which are transduced to waste unit 76, whereas the target cells are still part of the assay. In the pathogen dialysis section 70 described herein, the pathogen system from the whole blood sample is concentrated for microbial DNA analysis. The array of holes is formed by a plurality of 3 micron diameter holes 1 64 that fluidly communicate with the input in the upper cover channel 94 to the target channel 74. The 3 micron diameter aperture 164 and the dialysis riser aperture 168 in the target channel 74 are connected by a series of dialysis MST channels 204 -200 - 201209402 (best shown in Figures 15 and 21). The pathogen is small in volume and can therefore be filled through the 3 micron diameter well 164 and filled through the target channel 74 via the dialysis MST channel 204. Cells larger than 3 microns, such as red blood cells and white blood cells, remain in the waste channel 72 of the upper cover 46, which leads to the waste receptacle 76 (see Figure 7).
可利用其他孔形狀、大小和長寬比以分離特定病原體 或其他標靶細胞,諸如用於人DNA分析之白血球。有關 透析部和透析變體之詳細說明於後提供。 再次參照圖6和7,流體被吸入通過標靶通道74而到 達溶胞試劑貯器56之表面張力閥128。表面張力閥128具 有七個MST通道90,該等通道延伸於溶胞試劑貯器56和 標靶通道74之間。當彎液面被樣品流移除時,來自所有 七個MS T通道90之流速將大於來自抗凝血劑貯器54之 流速,其中貯器54之表面張力閥118具有三個MST通道 9〇(假設該些液體之物理特性爲大致相等)。因此溶胞試劑 於樣品混合物中之比例係大於抗凝血劑於樣品混合物中之 比例。 溶胞試劑和標靶細胞在化學溶胞部130內之標靶通道 74中藉由擴散混合。沸騰啓動閥1 26停止該液流,直到經 過足以發生擴散和溶胞之時間,以使基因物質自該標靶細 胞釋放(見圖6和7)。沸騰啓動閥之結構和操作參考圖3 1 和32於下詳細描述。其他主動閥類型(與像是表面張力閥 118之被動閥相反)亦已由申請人開發,該些其他類型之主 動閥可被用於此處以取代沸騰啓動閥。這些替代閥設計亦 -201 - 201209402 描述於下。 當沸騰啓動閥1 2 6打開時,經溶胞之細胞流入混合部 1 3 1以進行擴增前之限制酶剪切以及連接子接合。 參考圖13,當流體移除在混合部131起始處之表面張 力閥132之彎液面時’限制酶、連接子和接合酶自貯器58 釋放。該混合物流經混合部1 3 1之長度以擴散混合。混合 部131之末端爲通向培養部114之培養器入口通道133的 下降口 134(見圖13)。該培養器入口通道133將混合物饋 入呈彎繞配置之加熱微通道210,該微通道提供在限制酶 剪切以及連接子接合期間用來容納樣品之培養室(見圖1 3 及 1 4) » 圖 23、24、25、26、27、28 及 29 顯示 LOC 裝置 301 在圖6之AB區內之層。各圖顯示連續疊加(addition)之層 以形成CMOS + MST層48和上蓋46之結構。AB區顯示培 養部114之終點和擴增部112之起點。如圖14及23最佳 顯示’流體充滿培養部1 1 4之微通道2 1 0直到抵達沸騰啓 動閥1〇6’流體停在該處以令擴散發生。如上討論,在沸 騰啓動閥1 06上游之微通道2 1 0成爲含有樣品、限制酶、 接合酶和連接子之培養室。加熱器丨54接著啓動並於一段 特定時間維持穩定溫度以使限制酶剪切和連接子接合發生 〇 熟此技藝者將理解此培養步驟29丨(見圖4)係可任選的 ’僅爲一些核酸擴增分析類型所需。另外在一些例子中, 可會g需要在培養期結束時提供加熱步驟以使溫度急升至培 -202- 201209402 »溫度以± •該溫度急升會使限制酶和接合酶在進入擴增 部Π2前去活。去活限制酶和接合酶對於採用等溫核酸擴 增時特別重要。 在培養後’沸騰啓動閥106被啓動(打開)並使流體繼 續進入擴增部112。參考圖31及32,該混合物充滿呈彎 繞配置之加熱微通道158直到到達沸騰啓動閥108,該微 通道形成一或更多擴增室。如圖30之剖面示意圖清楚顯 φ 示,擴增混合物(dNTP、引子、緩衝液)自貯器60釋放及 聚合酶接著自貯器62釋放而進入連接培養部和擴增部(分 別爲114及112)之中間MST通道212。 圖35至51顯示LOC裝置301在圖6之AC區內之層 。各圖顯示連續疊加(addition)之層以形成CMOS + MST裝 置48和上蓋46之結構。AC區係擴增部1 12之終點和雜 交及檢測部5 2之起點。該經培養之樣品、擴增混合物和 聚合酶流經微通道158到達沸騰啓動閥108。在經足夠時 φ 間之擴散混合後,在微通道158中之加熱器154被啓動以 進行熱循環或等溫擴增。該擴增混合物經歷預定次數的熱 循環或預設之擴增時間以擴增足夠之標靶DNA。在核酸擴 增程序之後,沸騰啓動閥1 08打開且流體繼續進入雜交及 檢測部52。沸騰啓動閥之操作於下詳加描述。 如圖52所示,該雜交及檢測部52具有雜交室陣列 110。圖52、53、54及56詳細顯示雜交室陣列110和單 —雜交室180。在雜交室180之入口設有擴散屏障175, 其可防止標靶核酸、探針股和經雜交之探針在雜交期間於 -203- 201209402 雜交室1 8 0之間擴散,以防止錯誤的雜交檢測結果。擴散 屏障1 75代表長度夠長之流動路徑’以防止標靶序列和探 針在該探針和核酸雜交及訊號被檢 '測所需之時間內擴散出 一室且污染另一室’因此避免錯誤結果。 另一防止錯誤結果之機制是在多個雜交室中含有相同 探針。CMOS電路86自對應於包含相同探針之雜交室180 的光電二極體184導出單一結果。在推導單一結果時’異 常結果可被忽略或給予不同權重。 雜交所需之熱能係由CMOS控制之加熱器182提供( 於下詳加描述)。在啓動加熱器後’雜交發生於互補之標 靶-探針序列之間。CMOS電路86中之LED驅動器29傳 送訊息給位於測試模組1 〇中之LED 26以使之發光。這些 探針僅於雜交發生時發出螢光,因此省略爲了移除未結合 之股通常所需之清洗和乾燥步驟。雜交強制FRET探針 1 86之莖環結構打開,這使得螢光團得以回應LED激發光 而發射螢光能量,於下詳加描述。螢光係由位於各雜交室 180下方之CMOS電路86中之光電二極體184所檢測(見 以下關於雜交室之說明)。用於所有雜交室之光電二極體 184及相關之電子裝置共同形成光感應器44(見圖68)。在 其他實施例,光感應器可爲電荷耦合裝置之陣列(CCD陣 列)。該來自光電二極體1 84之檢測信號經過放大,並轉 換成數位輸出以供測試模組閱讀器1 2分析。檢測方法之 進一步細節係描述於下。 -204- 201209402 LOC裝置之其他詳細說明 模組化設計 L〇C裝置301具有許多功能部(包括試劑貯器54、56 、58、60及62、透析部70、溶胞部13〇、培養部114及 擴增部112)、閥類型、增濕器及濕度感測器。於其他實施 態樣之LOC裝置中,這些功能部可被省略,然可增加另 外的功能部或該等功能部可被用於與上述不同之用途。Other pore shapes, sizes, and aspect ratios can be utilized to isolate specific pathogens or other target cells, such as white blood cells for human DNA analysis. Detailed instructions for the dialysis section and dialysis variants are provided below. Referring again to Figures 6 and 7, fluid is drawn through target channel 74 to surface tension valve 128 of lysis reagent reservoir 56. The surface tension valve 128 has seven MST channels 90 that extend between the lysis reagent reservoir 56 and the target channel 74. When the meniscus is removed by the sample stream, the flow rate from all seven MS T channels 90 will be greater than the flow rate from the anticoagulant reservoir 54, where the surface tension valve 118 of the reservoir 54 has three MST channels 9 (Assume that the physical properties of the liquids are approximately equal). Thus the ratio of lytic reagent to the sample mixture is greater than the ratio of anticoagulant to the sample mixture. The lysis reagent and the target cells are mixed by diffusion in the target channel 74 in the chemical lysis unit 130. The boiling start valve 126 stops the flow until sufficient time for diffusion and lysis has occurred to release the genetic material from the target cells (see Figures 6 and 7). The structure and operation of the boiling start valve are described in detail below with reference to Figures 31 and 32. Other active valve types (as opposed to passive valves such as surface tension valve 118) have also been developed by the applicant, and other types of active valves can be used herein to replace the boiling start valve. These alternative valve designs are also described below -201 - 201209402. When the boiling start valve 1 26 is opened, the lysed cells flow into the mixing portion 1 3 1 to perform restriction enzyme cleavage and linker ligation before amplification. Referring to Figure 13, the restriction enzyme, linker and ligase are released from the reservoir 58 when the fluid is removed from the meniscus of the surface tension valve 132 at the beginning of the mixing portion 131. The mixture flows through the length of the mixing section 133 to diffusely mix. The end of the mixing portion 131 is a descending port 134 (see Fig. 13) leading to the incubator inlet passage 133 of the culture portion 114. The incubator inlet channel 133 feeds the mixture into a heated microchannel 210 in a crimped configuration that provides a culture chamber for holding the sample during restriction enzyme cleavage and linker ligation (see Figures 13 and 14). » Figures 23, 24, 25, 26, 27, 28 and 29 show the layers of the LOC device 301 in the AB zone of Figure 6. The figures show successive layers of addition to form the structure of CMOS + MST layer 48 and upper cover 46. The AB area shows the end point of the culture unit 114 and the starting point of the amplification unit 112. As best shown in Figures 14 and 23, the fluid fills the microchannel 2 1 0 of the culture portion 1 1 4 until it reaches the boiling start valve 1〇6' where the fluid stops to allow diffusion to occur. As discussed above, the microchannels 210 in the upstream of the boiling start valve 106 become the culture chamber containing the sample, restriction enzyme, ligase, and linker. The heater crucible 54 is then activated and maintains a stable temperature for a specific period of time to allow for restriction enzyme cleavage and linker engagement to occur. Those skilled in the art will appreciate that this culturing step 29 (see Figure 4) is optional. Some types of nucleic acid amplification assays are required. In addition, in some cases, it may be desirable to provide a heating step at the end of the incubation period to allow the temperature to rise sharply to a temperature of -202 - 201209402 » the temperature rises to cause the restriction enzyme and ligase to enter the amplification section. Go to live before Π2. Deactivation of restriction enzymes and ligases is particularly important when using isothermal nucleic acid amplification. After the incubation, the boiling start valve 106 is activated (opened) and the fluid continues to enter the amplifying portion 112. Referring to Figures 31 and 32, the mixture is filled with heated microchannels 158 in a curved configuration until reaching a boiling start valve 108 which forms one or more amplification chambers. As shown in the schematic cross-sectional view of Fig. 30, the amplification mixture (dNTP, primer, buffer) is released from the reservoir 60 and the polymerase is then released from the reservoir 62 to enter the junction culture section and the amplification section (114 and 112) The intermediate MST channel 212. Figures 35 through 51 show the layers of the LOC device 301 in the AC region of Figure 6. The figures show the layers of successive additions to form the structure of the CMOS + MST device 48 and the upper cover 46. The end of the AC zone amplification unit 1 12 and the start of the hybridization and detection unit 52. The cultured sample, amplification mixture, and polymerase flow through microchannel 158 to boiling start valve 108. After sufficient diffusion mixing between φ, the heater 154 in the microchannel 158 is activated for thermal cycling or isothermal amplification. The amplification mixture undergoes a predetermined number of thermal cycles or a predetermined amplification time to amplify sufficient target DNA. After the nucleic acid amplification procedure, the boiling start valve 108 is opened and the fluid continues to enter the hybridization and detection portion 52. The operation of the boiling start valve is described in detail below. As shown in Fig. 52, the hybridization and detection unit 52 has a hybridization chamber array 110. Figures 52, 53, 54, and 56 show the hybridization chamber array 110 and the single-hybridization chamber 180 in detail. A diffusion barrier 175 is provided at the entrance of the hybridization chamber 180 to prevent the target nucleic acid, the probe strand and the hybridized probe from diffusing between the -203-201209402 hybridization chambers during the hybridization to prevent erroneous hybridization. Test results. The diffusion barrier 1 75 represents a flow path that is long enough to prevent the target sequence and probe from diffusing out of one chamber and contaminating another chamber during the time required for the probe and nucleic acid hybridization and signal detection to be detected. Wrong result. Another mechanism to prevent erroneous results is to include the same probe in multiple hybridization chambers. CMOS circuit 86 derives a single result from photodiode 184 corresponding to hybridization chamber 180 containing the same probe. When extrapolating a single result, the anomalous results can be ignored or given different weights. The thermal energy required for hybridization is provided by a CMOS controlled heater 182 (described in more detail below). Hybridization occurs between the complementary target-probe sequences after the heater is activated. The LED driver 29 in the CMOS circuit 86 transmits a message to the LED 26 located in the test module 1 to illuminate it. These probes only fluoresce when hybridization occurs, so the cleaning and drying steps typically required to remove unbound strands are omitted. The hybrid forced FRET probe 1 86 has a stem-loop structure that allows the fluorophore to emit fluorescent energy in response to the LED excitation light, as described in more detail below. Fluorescence is detected by photodiode 184 located in CMOS circuit 86 below each hybridization chamber 180 (see description of hybridization chamber below). The photodiode 184 and associated electronics for all of the hybridization chambers together form a light sensor 44 (see Figure 68). In other embodiments, the light sensor can be an array of charge coupled devices (CCD arrays). The detection signal from the photodiode 1 84 is amplified and converted to a digital output for analysis by the test module reader 12. Further details of the detection method are described below. -204- 201209402 Other Detailed Description of LOC Device The modular design L〇C device 301 has many functional parts (including reagent reservoirs 54, 56, 58, 60 and 62, dialysis unit 70, lysis unit 13〇, culture department). 114 and amplification unit 112), valve type, humidifier and humidity sensor. In other embodiments of the LOC device, these functional portions may be omitted, but additional functional portions may be added or the functional portions may be used for different purposes than those described above.
舉例來說,培養部114可被用來作爲串聯擴增分析系 統之第一擴增部112,且該化學溶胞試劑貯器56被用來添 加第一擴增之引子、dNTP及緩衝液之混合物,及試劑貯 器58被用來添加反轉錄酶及/或聚合酶。若樣品需進行化 學溶胞,亦可在貯器56中加入化學溶胞試劑(連同擴增混 合物)’或替代性地,可藉由加熱樣品一段預定的時間以 在培養部中發生熱溶胞。在一些實施態樣中,若需要化學 溶胞並且希望使化學溶胞試劑與引子、dNTP及緩衝液之 混合物分開,可在緊鄰該混合物之貯器58之上游處倂入 額外貯器。 於一些情況中可能希望省略步驟,諸如培養步驟2 9 1 。於此情況中’可特別製造L0C裝置以免去試劑貯器58 及培養部114,或可簡單地不在該貯器裝載試劑,或者若 存有主動閥時’該主動閥不被啓動以釋放試劑至樣品流中 ,因此該培養部就變成僅將樣品自溶胞部1 3 0傳送至擴增 部1 1 2之通道。加熱器係可獨立操作,因此當反應仰賴加 熱時,諸如熱溶胞反應,設定加熱器不於此步驟期間啓動 -205- 201209402 可確保熱溶胞不會發生在不需熱溶胞之L0C裝置中。透 析部70可位於如圖4所示之微流體裝置內之流體系統之 起點’或可位於該微流體裝置內之任何其他位置。舉例來 說’在一些情況下,於擴增階段292之後透析以在雜交及 檢測步驟294之前移除細胞碎片可能有利。或者,可於 LOC裝置中之任何位置倂入二或多個透析部。同樣地,有 可能倂入額外之擴增部1 1 2以使得多重標靶在雜交室陣列 1 1 0中以特定核酸探針進行檢測之前,能同時或連續進行 擴增。以分析例如全血之樣品而言不需要進行透析,因此 簡單地於LOC設計之樣品輸入及製備部288省略透析部 70。在一些情況下,並不一定要省略L〇c裝置之透析部 70’即使該分析不需進行透析。若透析部的存在不會對該 分析造成幾何性阻礙,仍可使用於樣品輸入及製備部具有 透析部70之LOC而不喪失所需之功能。 此外’檢測部294可包括蛋白質體室陣列,其係與雜 交室陣列相同,但載有設計成與存在於非擴增之樣品中之 樣品標靶蛋白質共軛或雜交之探針,而不是設計用來與標 靶核酸序列雜交之核酸探針。 將了解的是,爲用於此診斷系統而製造之.LOC裝置 係根據特定LOC應用加以選擇之功能部的不同組合。絕 大部分之功能部對許多LOC裝置而言係爲相同,而針對 新應用之額外LOC裝置之設計係關於自現存LOC裝置中 所使用之各種功能部選項中彙整適當之功能部組合。 本說明中僅顯示少數LOC裝置,更多LOC裝置係以 -206- 201209402 圖式說明以闡述爲此系統製造之LOC裝置的設計彈性。 熟此技藝者將可輕易地明白本說明書所說明之LOC裝置 並非窮舉,且許多另外的LOC設計係關於彙整適當之功 能部組合。 樣品類型For example, the culture portion 114 can be used as the first amplification portion 112 of the tandem amplification analysis system, and the chemical lysis reagent reservoir 56 is used to add the first amplification primer, dNTP, and buffer. The mixture, and reagent reservoir 58 are used to add reverse transcriptase and/or polymerase. If the sample is to be chemically lysed, a chemical lysing reagent (along with the amplification mixture) may also be added to the reservoir 56' or alternatively, the sample may be heated for a predetermined period of time to cause thermal lysis in the culture section. . In some embodiments, if chemical lysis is desired and it is desirable to separate the chemical lysis reagent from the primer, dNTP, and buffer mixture, an additional reservoir can be introduced upstream of the reservoir 58 immediately adjacent to the mixture. In some cases it may be desirable to omit steps such as incubation step 2 1 1 . In this case, the L0C device may be specially manufactured to avoid the reagent reservoir 58 and the culture portion 114, or may simply not be loaded with the reagent, or if an active valve is present, the active valve is not activated to release the reagent to In the sample stream, the culture portion becomes a channel for transferring only the sample from the lysis portion 1 30 to the amplification portion 112. The heater can be operated independently, so when the reaction depends on heating, such as hot lysis, setting the heater not to start during this step -205- 201209402 ensures that hot lysis does not occur in L0C devices that do not require hot lysis in. The dialysis unit 70 can be located at the beginning of the fluid system within the microfluidic device as shown in Figure 4 or can be located at any other location within the microfluidic device. By way of example, in some cases, it may be advantageous to dialyze after amplification stage 292 to remove cell debris prior to hybridization and detection step 294. Alternatively, two or more dialysis sections can be inserted at any location in the LOC device. Similarly, it is possible to break in additional amplifications 1 1 2 so that the multiplex targets can be amplified simultaneously or sequentially before detection of the specific nucleic acid probes in the hybridization chamber array 110. Since dialysis is not required for analysis of a sample such as whole blood, the dialysis portion 70 is simply omitted from the sample input and preparation portion 288 of the LOC design. In some cases, it is not necessary to omit the dialysis section 70' of the L〇c device even if the analysis does not require dialysis. If the presence of the dialysis section does not cause a geometrical impediment to the analysis, the sample input and preparation section can still be used to have the LOC of the dialysis section 70 without losing the desired function. Further, the detection portion 294 can include a protein body chamber array that is identical to the hybrid chamber array but carries a probe that is designed to conjugate or hybridize to a sample target protein present in the non-amplified sample, rather than a design. A nucleic acid probe for hybridization to a target nucleic acid sequence. It will be appreciated that the LOC devices manufactured for use in this diagnostic system are different combinations of functional components selected for a particular LOC application. The vast majority of functional units are the same for many LOC devices, and the design of additional LOC devices for new applications relates to the combination of appropriate functional components from the various functional options used in existing LOC devices. Only a few LOC devices are shown in this description, and more LOC devices are illustrated in the -206-201209402 schema to illustrate the design flexibility of the LOC devices manufactured for this system. Those skilled in the art will readily appreciate that the LOC devices described in this specification are not exhaustive, and that many additional LOC designs are related to integrating appropriate functional combinations. Sample type
LOC變體可接受及分析各種呈液體形式之樣品類型之 核酸或蛋白質內容,該樣品類型包括但不限於血液及血液 產物、唾液、腦脊髓液、尿液、精液、羊膜液、臍帶血、 母乳、汗液、肋膜積液、淚液、心囊液、腹腔液、環境水 樣品及飮料樣品。自巨觀核酸擴增獲得之擴增子亦可利用 該LOC裝置進行分析;於此情況中,所有試劑貯器將爲 空的或經組構爲不釋出其內容物,而該透析、溶胞、培養 及擴增部將僅被用來將樣品從樣品入口 68輸送至雜交室 180以如上述進行核酸檢測。 一些樣品類型在輸入LOC裝置之前需要預處理之步 驟,例如精液可能需要經液化及黏液可能需要經酵素預處 理以減低黏性。 樣品輸入 參照圖1及1 2,樣品被添加至測試模組1 〇之大容器 24。該大容器24係經截短之圓錐體,其藉由毛細作用饋 入LOC裝置301之入口 68。樣品於此處流入64μιη寬X 6 Ομηι深之上蓋通道94中,並亦藉由毛細作用被吸引至抗 -207- 201209402 凝血劑貯器54。 試劑貯器 使用微流體裝置諸如LOC裝置301之分析系統所需 之小量試劑,允許該等試劑貯器以各個具有小體積之試劑 貯器包含生化處理所需之所有試劑。此體積一定小於 1,000,000,000立方微米,多半小於300,000,000立方微米 ,通常小於70,000,000立方微米,而以圖式顯示之LOC 裝置301而言小於20,000,000立方微米。 透析部 參照圖1 5至21、3 3及3 4,病原體透析部70係經設 計以濃縮來自樣品之病原體標靶細胞。如前所述,複數個 在頂部層66中呈3微米直徑洞口之孔164過濾來自樣品 主體之標靶細胞。當樣品流經3微米直徑之孔1 64時,微 生物病原體通過洞口而進入一系列透析MST通道204並 經由16μιη透析上升孔168流回標靶通道74中(見圖33及 34)。剩餘之樣品(紅血球等)留在上蓋通道94中。於病原 體透析部70之下游,上蓋通道94變成通往廢料儲器76 之廢料通道72。對於產生大量廢物之生物樣品類型,測試 模組10之外殼13內之泡沫體(foam)插入物或其他多孔元 件49係經組構成與廢料貯器76呈流體相通(見圖丨)。 病原體透析部7 〇之功能完全依賴流體樣品之毛細作 用。在病原體透析部70上游端之直徑3微米之孔丨64具 -208- 201209402 有毛細起始特徵(CIF)166(見圖33),以使流體被向下吸引 至其下方之透析MST通道204之中。標靶通道74之第一 上升孔198亦具有CIF 202(見圖15)以防止流體在透析上 升孔168輕易地形成彎液面。LOC variants can accept and analyze a variety of nucleic acid or protein contents in a liquid form, including but not limited to blood and blood products, saliva, cerebrospinal fluid, urine, semen, amniotic fluid, cord blood, breast milk , sweat, pleural effusion, tears, pericardial fluid, peritoneal fluid, environmental water samples and dip samples. Amplicon obtained from macroscopic nucleic acid amplification can also be analyzed using the LOC device; in this case, all reagent reservoirs will be empty or configured to not release their contents, and the dialysis, dissolution The cell, culture and amplification sections will only be used to deliver the sample from sample inlet 68 to hybridization chamber 180 for nucleic acid detection as described above. Some sample types require a pre-treatment step prior to input into the LOC device. For example, semen may require liquefaction and mucus may require pre-treatment with enzyme to reduce viscosity. Sample Input Referring to Figures 1 and 12, the sample is added to the large container 24 of the test module 1 . The large container 24 is a truncated cone that is fed by capillary action into the inlet 68 of the LOC unit 301. The sample is here flowed into a 64 μιη wide X 6 Ομηι deep cap channel 94 and is also attracted to the anti-207-201209402 coagulant reservoir 54 by capillary action. Reagent Reservoirs A small amount of reagents required for the analysis system of a microfluidic device, such as LOC device 301, are used to allow the reagent reservoirs to contain all of the reagents required for biochemical treatment in each of the reagent reservoirs having a small volume. This volume must be less than 1,000,000,000 cubic microns, mostly less than 300,000,000 cubic microns, typically less than 70,000,000 cubic microns, and less than 20,000,000 cubic microns in the LOC device 301 shown. Dialysis section Referring to Figures 15 to 21, 3 3 and 3 4, the pathogen dialysis section 70 is designed to concentrate the pathogen target cells from the sample. As previously described, a plurality of wells 164 having a 3 micron diameter opening in the top layer 66 filter the target cells from the sample body. As the sample flows through a 3 micron diameter well 1 64, the microbial pathogen enters a series of dialysis MST channels 204 through the opening and flows back into the target channel 74 via the 16 μιη dialysis riser 168 (see Figures 33 and 34). The remaining sample (red blood cells, etc.) remains in the upper cover channel 94. Downstream of the pathogen dialysis section 70, the upper cover passage 94 becomes a waste passage 72 to the waste reservoir 76. For a biological sample type that produces a large amount of waste, a foam insert or other porous member 49 within the outer casing 13 of the test module 10 is configured to be in fluid communication with the waste reservoir 76 (see Figure 丨). The function of the pathogen dialysis unit is completely dependent on the capillary action of the fluid sample. A 3 micron diameter bore 64 at the upstream end of the pathogen dialysis section 70 has a capillary initiation feature (CIF) 166 (see Figure 33) -208-201209402 to allow fluid to be drawn downwardly to the dialysis MST channel 204 below it. Among them. The first rising aperture 198 of the target channel 74 also has a CIF 202 (see Figure 15) to prevent fluid from easily forming a meniscus on the dialysis upwell 168.
圖81槪要顯示之小組分透析部682可具有與病原體 透析部70類似之結構。該小組分透析部藉由孔之大小(及 形狀若有需要)以分離來自樣品之任何小標靶細胞或分子 ,該孔適合允許小標靶細胞或分子通過進入標靶通道並繼 續進一步分析。大尺寸之細胞或分子被移除至廢料貯器 766。因此,該LOC裝置30(見圖1及104)並不受限於分 離尺寸小於3 μιη之病原體,亦可用於分離任何所欲尺寸 之細胞或分子。 溶胞部 再次參照圖7、1 1及1 3,樣品中之基因物質係藉化學 φ 溶胞處理自細胞釋出。如上所述,來自溶胞貯器56之溶 胞試劑係與溶胞貯器56之表面張力閥1 28下游之標靶通 道74中之樣品流混合。然而,一些診斷分析較適合使用 熱溶胞處理,或甚至是標靶細胞之化學及熱溶胞的組合。 該LOC裝置301將此配合培養部114之加熱微通道210。 該樣品流充滿培養部1 1 4並停止於沸騰啓動閥1 06。該培 養微通道2 1 0將樣品加熱至細胞膜破裂之溫度。 在一些熱溶胞應用中不需要化學溶胞部130中之酶反 應,由熱溶胞完全取代化學溶胞部130中之酶反應。 •209- 201209402 沸騰啓動閥 如上所述,該LOC裝置301具有三個沸騰啓震 、106及108。這些閥之位置係顯示於圖6。圖31 顯示之沸騰啓動閥108之放大平面圖,其位於擴增 之加熱微通道158之末端。 該樣品流1 1 9藉由毛細作用被吸引通過該加熱 1 58直至到達該沸騰啓動閥1 08 »該樣品流之前導 120固定於該閥入口 146之彎液面錨定器98。該彎 定器98之幾何形狀停止該前進彎液面以阻止毛細 。如圖31及32中所示,該彎液面錨定器98係由 通道90至上蓋通道94之上升開口所提供之孔。該 120之表面張力使該閥保持閉合。環形加熱器152 入口 146之周圍。該環形加熱器152係經由沸騰啓 熱器接點〗53而受CMOS控制。 要打開該閥,該CMOS電路86傳送電脈衝至 熱器接點1 53。該環形加熱器1 52經電阻加熱直到 樣品1 1 9沸騰爲止。該沸騰使彎液面1 20自閥入口 除並開始濕潤上蓋通道94。一旦開始濕潤該上蓋廷 ’便可恢復毛細作用。該流體樣品1 1 9充滿上蓋狂 且流經閥下降口 1 5 0至閥出口 1 4 8,該處之毛細作 之液流繼續沿著擴增部出口通道1 60前進至雜交及 52。液體感測器1 74被置於該閥之前及之後以供診 ]閥 1 26 爲單獨 部112 微通道 彎液面 液面固 作用流 自MST 彎液面 位於閥 動閥加 該閥加 該液體 146移 I道94 I道 94 用驅動 檢測部 斷之用 -210- 201209402 將了解的是,一旦沸騰啓動閥被打開就無法再被關上 。然而由於該LOC裝置301及該測試模組1〇係單次使用 裝置,因此不需要再關閉該閥。 % 4 ZJ 11 增3' 擴 1 酸7' 核、 及6 部圖 養 培 2 3 至 1Λ 5 及 顯不培養部114及擴增部112。培養部114具有單一條力口 熱培養微通道210,其係於MST通道層1〇〇中經蝕刻成彎 繞圖案’始於下降口 134及終於沸騰啓動閥ι〇6(見圖I: 及1 4)。控制培養部1 1 4之溫度能讓酶反應以更高效率發 生。類似地,擴增部112具有始於沸騰啓動閥1〇6通向沸 騰啓動閥108之呈彎繞結構之加熱擴增微通道158(見圖^ 及14)。當混合 '培養及核酸擴增發生時,這些閥停止液 流,以保留該等標靶細胞於該經加熱之培養或擴增微通道 210或158中。該等微通道之彎繞圖案亦促進(在某種程度 上)標靶細胞與試劑之混合。 在該培養部1 1 4及擴增部1 1 2中,樣品細胞及試劑係 經由使用脈衝寬度調變(PWM)之CMOS電路86所控制之 加熱器154加熱。該經加熱之培養微通道210及擴增微通 道158之彎繞結構的每個彎道具有三個可獨立操作之加熱 器154(延伸於彼等之個別加熱器接點156之間(見圖14): ,其提供輸入熱通量密度之二維控制。如最佳於圖5 1中 所示者,該加熱器154係由頂部層66支持並包埋於下密 封層64。該加熱器之材料爲TiAl,但許多其他的傳導性 -211 - 201209402 金屬也適用。該長型加熱器154係與形成彎繞結構之寬彎 道的各通道部之縱向長度平行。於擴增部112中,各個寬 彎道可經由個別加熱器控制以作爲分開之PCR室。The small component dialysis section 682 shown in Fig. 81 may have a structure similar to that of the pathogen dialysis section 70. The small component dialysis section separates any small target cells or molecules from the sample by the size of the well (and shape if desired) which is adapted to allow small target cells or molecules to pass through the target channel and continue to be further analyzed. Large size cells or molecules are removed to waste receptacle 766. Thus, the LOC device 30 (see Figures 1 and 104) is not limited to pathogens having a size of less than 3 μηη, and can be used to isolate cells or molecules of any desired size. Lysis section Referring again to Figures 7, 1 1 and 13 , the gene material in the sample is released from the cell by chemical φ lysis treatment. As described above, the lysing reagent from lysis vessel 56 is mixed with the sample stream in target channel 74 downstream of surface damper valve 128 of lysis vessel 56. However, some diagnostic assays are more suitable for use with hot lysis, or even a combination of chemical and thermal lysis of target cells. The LOC device 301 cooperates with the heating microchannel 210 of the culture portion 114. The sample stream is filled with the culture portion 1 14 and stopped at the boiling start valve 106. The culture microchannel 210 heats the sample to a temperature at which the cell membrane ruptures. The enzyme reaction in the chemical lysis unit 130 is not required in some hot lysis applications, and the enzyme reaction in the chemical lysis unit 130 is completely replaced by the hot lysis. • 209- 201209402 Boiling Start Valve As mentioned above, the LOC unit 301 has three boiling shocks, 106 and 108. The position of these valves is shown in Figure 6. Figure 31 shows an enlarged plan view of the boiling start valve 108 at the end of the augmented heating microchannel 158. The sample stream 1 1 9 is attracted by the capillary through the heating 1 58 until the boiling start valve 108 is reached. The sample flow guide 120 is fixed to the meniscus anchor 98 of the valve inlet 146. The geometry of the bender 98 stops the advancing meniscus to prevent capillary movement. As shown in Figures 31 and 32, the meniscus anchor 98 is a hole provided by the passage 90 to the raised opening of the upper cover passage 94. The surface tension of the 120 keeps the valve closed. The annular heater 152 is surrounded by the inlet 146. The ring heater 152 is CMOS controlled via a boiling heater contact 53. To open the valve, the CMOS circuit 86 delivers an electrical pulse to the heater junction 153. The ring heater 152 is heated by resistance until the sample 1 19 is boiled. This boiling removes the meniscus 110 from the valve inlet and begins to wet the upper cover passage 94. Once the upper cover is started, the capillary action can be restored. The fluid sample 1 1 9 is filled with a cap and flows through the valve lower port 150 to the valve outlet 1 4 8 , where the capillary flow continues to advance along the amplifying outlet channel 1 60 to the hybrid and 52. The liquid sensor 1 74 is placed before and after the valve for diagnosis] valve 1 26 is a separate part 112 microchannel meniscus liquid surface solid flow from the MST meniscus at the valve valve plus the valve plus the liquid 146 shift I channel 94 I channel 94 with the drive detection section off -210- 201209402 It will be understood that once the boiling start valve is opened, it can no longer be closed. However, since the LOC device 301 and the test module 1 are single-use devices, there is no need to close the valve. % 4 ZJ 11 is increased by 3' expansion 1 acid 7' core, and 6 parts are cultured 2 3 to 1 Λ 5 and the culture portion 114 and the amplification portion 112 are shown. The culture portion 114 has a single strip of hot culture microchannels 210 which are etched into a meandering pattern in the MST channel layer 1 'starting at the lowering opening 134 and finally boiling the starting valve ι 6 (see Figure I: 1 4). Controlling the temperature of the culture section 1 14 allows the enzyme reaction to occur with higher efficiency. Similarly, the amplifying portion 112 has a heating amplifying microchannel 158 (see Figs. 14 and 14) which is a bouncing structure that starts from the boiling start valve 1〇6 to the boiling start valve 108. When mixed 'culture and nucleic acid amplification occurs, these valves stop the flow to retain the target cells in the heated culture or amplification microchannel 210 or 158. The curved pattern of the microchannels also promotes (to some extent) the mixing of the target cells with the reagents. In the culture unit 1 14 and the amplification unit 1 1 2, the sample cells and reagents are heated by a heater 154 controlled by a pulse width modulation (PWM) CMOS circuit 86. Each curved corner of the heated culture microchannel 210 and the expanded microchannel 158 has three independently operable heaters 154 extending between the individual heater contacts 156 (see Figure 14). It provides a two-dimensional control of the input heat flux density. As best shown in Figure 51, the heater 154 is supported by the top layer 66 and embedded in the lower sealing layer 64. The heater The material is TiAl, but many other conductive -211 - 201209402 metals are also suitable. The long heater 154 is parallel to the longitudinal length of each channel portion forming a wide curve of the curved structure. In the amplifying portion 112, Each wide curve can be controlled via a separate heater as a separate PCR chamber.
使用微流體裝置諸如LOC裝置301之分析系統所需 之小體積的擴增子,允許於擴增部1 1 2中使用小體積之擴 增混合物以供擴增。此體積一定小於4 0 0奈升,多半小於 170奈升,通常小於70奈升,而以該LOC裝置301爲例 係介於2奈升至30奈升。 加熱速率增加及較佳擴散混合The use of a small volume of amplicons required for the analysis system of a microfluidic device, such as LOC device 301, allows for the use of a small volume of amplification mixture in amplification portion 1 1 2 for amplification. This volume must be less than 4,000 liters, mostly less than 170 liters, typically less than 70 nanoliters, and the LOC device 301 is exemplified by 2 nanoliters to 30 nanoliters. Increased heating rate and better diffusion mixing
各通道部的小截面積提高擴增流體混合物之加熱速率 。所有流體與加熱器1 54之間的距離都相當短。減少該通 道截面積(即擴增微通道158截面)至小於1〇〇,〇〇〇平方微 米相較於“大規模”設備可達顯著較高之加熱速率。微影 製造技術使得該擴增微通道158具有小於1 6,000平方微 米之橫越液流路徑之截面積,其提供實質上較高之加熱速 率。利用微影製造技術可輕易地獲得1微米級之尺寸特徵 。若僅需要非常小量之擴增子(以LOC裝置301而言),可 使該截面積減少至小於2,5 00平方微米。以在具有1,〇〇〇 至2,000個探針之LOC裝置上進行且要求在1分鐘內“輸 入樣品、得到結果”之診斷分析而言,介於400平方微米 至1平方微米之間的橫越流體之截面積係爲適當。 在擴增微通道1 5 8中之加熱器元件以每秒大於8 0絕 對溫度(K)之速率加熱核酸序列,大多數之情況下爲每秒 -212- 201209402 大於100 K之速率。通常該加熱器元件以每秒大於1,000 Κ之速率加熱核酸序列,且該加熱器元件經常以每秒大於 10,000 Κ之速率加熱核酸序列。通常根據分析系統之需求 ,該加熱器元件以每秒大於100,000 Κ、每秒大於1,000,000 Κ、每秒大於10,000,000 Κ、每秒大於20,000,000 Κ、每秒大 於 40,000,000 Κ、每秒大於 80,000,000 Κ及每秒大於 160,000,000 Κ之速率加熱核酸序列。The small cross-sectional area of each channel portion increases the heating rate of the amplification fluid mixture. The distance between all fluids and heaters 154 is quite short. Reducing the cross-sectional area of the channel (i.e., the cross section of the augmented microchannel 158) to less than 1 〇〇, the squared micrometer can achieve a significantly higher heating rate than the "large scale" device. The lithography manufacturing technique allows the amplifying microchannel 158 to have a cross-sectional area of less than 1 6,000 square micrometers across the flow path, which provides a substantially higher heating rate. Dimensional features of 1 micron are easily obtained using lithography manufacturing techniques. If only a very small amount of amplicons are required (in the case of LOC device 301), the cross-sectional area can be reduced to less than 2,500 square microns. For a diagnostic analysis performed on a LOC device with 1, 〇〇〇 to 2,000 probes and requiring "input of the sample, yielding results" within 1 minute, a cross between 400 square microns and 1 square micron The cross-sectional area of the fluid is appropriate. The heater element in the amplification microchannel 158 heats the nucleic acid sequence at a rate of greater than 80 absolute temperatures (K) per second, in most cases at a rate of -212 to 201209402 per second greater than 100 K. Typically, the heater element heats the nucleic acid sequence at a rate greater than 1,000 psi per second, and the heater element often heats the nucleic acid sequence at a rate greater than 10,000 Torr per second. Typically, depending on the requirements of the analytical system, the heater element is greater than 100,000 sec per second, greater than 1,000,000 sec per second, greater than 10,000,000 sec per second, greater than 20,000,000 sec per second, greater than 40,000,000 sec per second, greater than 80,000,000 sec per second, and The nucleic acid sequence is heated at a rate of greater than 160,000,000 ticks per second.
小截面積通道亦有益於任何試劑與樣品流體之擴散性 混合。於擴散性混合完成之前,一種液體擴散至另一液體 之現象在靠近兩液體間之界面處最爲顯著。濃度隨著與界 面之距離增加而減少。使用具有相對微小之橫越流體方向 之截面積的微通道使兩種流體流動靠近界面以更爲快速地 擴散混合。減少該通道截面積至小於1 00,000平方微米相 較於“大規模”設備可達顯著較高之混合速率。微影製造 技術允許微通道之橫越液流路徑之截面積小於1 6000平方 Φ 微米,其提供顯著較高之混合速率。若僅需要非常小量之 體積(以LOC裝置30 1而言),可使該截面積減少至小於 2500平方微米。以在具有1000至2000個探針之LOC裝 置上進行且要求在1分鐘內“輸入樣品、得到結果”之診 斷分析而言,介於400平方微米至1平方微米之間的橫越 流體之截面積係爲適當。 快速熱循環時間 使樣品混合物保持接近加熱器且使用極小之流體量得 -213- 201209402 以在核酸擴增期間進行快速之熱循環。以最多1 50鹼基對 (bp)長度之標靶序列而言,每次熱循環(即變性、黏著及引 子延伸)係於不到3 0秒內完成。在絕大多數之診斷分析中 ,該個別熱循環時間係小於1 1秒,大部分係小於4秒。 以進行一些最常見診斷分析之LOC裝置30而言,最多 150鹼基對(bp)長之標靶序列的熱循環時間係介於0.45秒 至1 . 5秒之間。此速度之熱循環允許該測試模組能在遠短 於10分鐘之內完成核酸擴增程序:通常不到220秒即可 完成。針對大多數分析而言,該擴增部在樣品流體進入樣 品入口 80秒以內產生足夠之擴增子。許多分析在30秒內 即產生足夠之擴增子。 當完成預設數目之擴增循環時,該擴增子係經由沸騰 啓動閥108饋入雜交及檢測部52。 雜交室 v 圖52、53、54、56及57顯示在雜交室陣列110中之 雜交室180。該雜交及檢測部52具有24x45陣列1 10之雜 交室180,該雜交室各具有雜交-反應性FRET探針186、 加熱器元件182及整合之光電二極體184。該光電二極體 1 8 4係經倂入以檢測由標靶核酸序列或蛋白質與該FRET 探針186雜交所產生之螢光。各個光電二極體184係由 CMOS電路86獨立控制。在該FRET探針186與該光電二 極體1 84之間的任何物質必須可被發射光穿透。因此,在 該探針186與光電二極體184之間的壁部97亦可被發射 -214- 201209402 光光學穿透。於LOC裝置301中’壁部97爲二氧化矽之 薄層(約0.5微米)。The small cross-sectional area channel is also beneficial for the diffusive mixing of any reagent with the sample fluid. The phenomenon of one liquid diffusing to another liquid is most pronounced near the interface between the two liquids before diffusion mixing is completed. The concentration decreases as the distance from the interface increases. The use of microchannels having a relatively small cross-sectional area across the fluid direction causes the two fluids to flow closer to the interface for faster diffusion mixing. Reducing the cross-sectional area of the channel to less than 100,000 square microns provides a significantly higher mixing rate than "large scale" equipment. The lithography manufacturing technique allows the microchannel to cross the flow path with a cross-sectional area of less than 16,000 square Φ microns, which provides a significantly higher mixing rate. If only a very small volume is required (in the case of LOC unit 30 1), the cross-sectional area can be reduced to less than 2500 square microns. Cross-fluid section between 400 square microns and 1 square micron for diagnostic analysis on a LOC device with 1000 to 2000 probes and requiring "input sample, result" in 1 minute The area is appropriate. Rapid Thermal Cycle Time Keep the sample mixture close to the heater and use a very small amount of fluid -213-201209402 to perform a rapid thermal cycle during nucleic acid amplification. For a target sequence of up to 1 50 base pairs (bp) in length, each thermal cycle (i.e., denaturation, adhesion, and extension of the primer) is completed in less than 30 seconds. In most diagnostic analyses, the individual thermal cycle time is less than 11 seconds and most are less than 4 seconds. For LOC device 30, which performs some of the most common diagnostic assays, the thermal cycle time of a target sequence of up to 150 base pairs (bp) is between 0.45 seconds and 1.5 seconds. This rate of thermal cycling allows the test module to complete the nucleic acid amplification process in as little as 10 minutes: usually less than 220 seconds. For most analyses, the amplification produces enough amplicons within 80 seconds of the sample fluid entering the sample inlet. Many analyses produce enough amplicons in 30 seconds. When a predetermined number of amplification cycles are completed, the amplicon is fed to the hybridization and detection portion 52 via the boiling start valve 108. Hybridization Chamber v Figures 52, 53, 54, 56 and 57 show the hybridization chamber 180 in the hybridization chamber array 110. The hybridization and detection section 52 has a 24x45 array 1 10 of hybrid chambers 180 each having a hybrid-reactive FRET probe 186, a heater element 182, and an integrated photodiode 184. The photodiode 1 8 4 is introgressed to detect fluorescence produced by hybridization of the target nucleic acid sequence or protein to the FRET probe 186. Each photodiode 184 is independently controlled by a CMOS circuit 86. Any substance between the FRET probe 186 and the photodiode 1 84 must be transparent to the emitted light. Therefore, the wall portion 97 between the probe 186 and the photodiode 184 can also be optically penetrated by the emission -214 - 201209402. In the LOC device 301, the wall portion 97 is a thin layer of cerium oxide (about 0.5 μm).
於各雜交室180下方直接倂入光電二極體184允許由 雖然極小之探針-標靶雜交體體積但仍產生可檢測之螢光 信號(見圖5 4)。該小量允許使用小體積之雜交室。可檢測 之探針-標靶雜交體之量所需之雜交前之探針量一定小於 2 70微微克〇1<:(^^111)(對應900,000立方微米),於大多數 的情況中小於60微微克(對應2 00,000立方微米),通常小 於12微微克(對應4 0,000立方微米),並以隨附圖式所示 之LOC裝置301爲例係小於2.7微微克(對應9,000立方 微米之室體積)。當然,縮小雜交室之尺寸容許更高密度 之室,因此容許該LOC裝置具有更多探針。於LOC裝置 301中,該雜交部在1,500微米乘1,5 00微米之面積內具 有超過1,000個室(即每個室小於2,250平方微米)》較小 之體積亦減少反應時間,因此雜交及檢測可更爲快速。另 一個在各室中需要少量探針之優點在於,在製造該LOC 裝置期間僅需點樣極小量之探針溶液至各室之中。本發明 之L0C裝置之實施態樣可利用體積1奈升或更少之探針 溶液點樣。 於核酸擴增之後,沸騰啓動閥108被啓動且該擴增子 沿著流路176流動並流進各雜交室180(見圖52及56)。終 點液體感測器178顯示雜交室180充滿擴增子及可啓動加 熱器182之時點。 經過充分之雜交時間後,LED 26 (見圖2)係經啓動。 -215- 201209402Direct incorporation of photodiode 184 beneath each hybridization chamber 180 allows for a detectable fluorescent signal to be produced by the extremely small probe-target hybrid volume (see Figure 5 4). This small amount allows the use of a small volume of hybridization chamber. The amount of probe before hybridization required for the amount of detectable probe-target hybrid must be less than 2 70 pg 〇 1 <: (^^111) (corresponding to 900,000 cubic microns), in most cases less than 60 picograms (corresponding to 200,000 cubic micrometers), typically less than 12 picograms (corresponding to 40,000 cubic micrometers), and less than 2.7 picograms (corresponding to a chamber of 9,000 cubic micrometers) using the LOC device 301 as shown in the accompanying drawings. volume). Of course, reducing the size of the hybridization chamber allows for a higher density chamber, thus allowing the LOC device to have more probes. In the LOC device 301, the hybrid has more than 1,000 chambers in an area of 1,500 micrometers by 1,500 micrometers (i.e., less than 2,250 square micrometers per chamber). The smaller volume also reduces reaction time, thus hybridization. And testing can be faster. Another advantage of requiring a small number of probes in each chamber is that only a very small amount of probe solution needs to be spotted into each chamber during manufacture of the LOC device. Embodiments of the LOC device of the present invention can be spotted using a probe solution having a volume of 1 liter or less. After nucleic acid amplification, the boiling start valve 108 is activated and the amplicon flows along the flow path 176 and flows into each of the hybridization chambers 180 (see Figures 52 and 56). Endpoint liquid sensor 178 displays the point at which hybridization chamber 180 is filled with amplicon and priming heater 182. After a sufficient hybridization time, LED 26 (see Figure 2) is activated. -215- 201209402
各雜交室180中之開口設有光窗136以暴露FRET探針 186至激發輻射(見圖52、54及56)。該LED 26發光夠長 的時間以誘發來自探針之高強度螢光信號。於激發期間, 光電二極體184短路(short ed)。經預編程延遲300(見圖2) 之後’該光電二極體184係在無激發光存在下被致能 (enabled)及檢測螢光發射。在該光電二極體184之主動區 185(見圖54)上的入射光轉換成接著可利用CMOS電路86 測量之光電流。The opening in each hybrid chamber 180 is provided with a light window 136 to expose the FRET probe 186 to the excitation radiation (see Figures 52, 54 and 56). The LED 26 emits light for a time long enough to induce a high intensity fluorescent signal from the probe. During the excitation, the photodiode 184 is shorted. After pre-programmed delay 300 (see Figure 2), the photodiode 184 is enabled and detects fluorescent emissions in the absence of excitation light. The incident light on the active region 185 (see FIG. 54) of the photodiode 184 is converted into a photocurrent that can then be measured by the CMOS circuit 86.
雜交室180各載有供檢測單一標靶核酸序列之探針。 若有需要,各雜交室180可載有檢測超過1,000種不同標 靶之探針。或者’許多或所有雜交室可載有相同探針以重 複檢測相同之標靶核酸。以此方式在雜交室陣列1 1 0中複 製探針導致所獲得之結果的可信度增加,若希望可藉由合 併相鄰該些雜交室之光電二極體的結果以提供單一結果。 熟此技藝者將了解,於雜交室陣列110上有可能具有1至 超過1,000種不同的探針,依據該分析規格而定。 增濕器及濕度感測器 圖6之AG區指示增濕器1 96的位置。增濕器防止試 劑及探針在LOC裝置301操作期間蒸發。最佳如圖55之 放大圖所示,貯水器1 88係與三個蒸發器1 90流體相通。 貯水器1 8 8盛裝分子生物等級用水且於製造期間被密封。 最佳如圖5 5及74所示,水藉由毛細作用被抽吸至三個下 降口 194且沿著個別供水通道192到達蒸發器190之三個 -216- 201209402 上升口 193組。彎液面固定於各個上升口 193以保留水。 蒸發器具有環形加熱器191,其環繞上升口 193。該環形 加熱器191係藉由導電柱376連接至CMOS電路86之頂 金屬層195(見圖37)。於啓動時,環形加熱器191加熱該 水使之蒸發並濕潤周圍的裝置。Hybridization chambers 180 each carry a probe for detecting a single target nucleic acid sequence. Each hybridization chamber 180 can carry probes that detect more than 1,000 different targets, if desired. Alternatively, many or all of the hybridization chambers may carry the same probe to repeatedly detect the same target nucleic acid. Copying the probes in the hybridization chamber array 110 in this manner results in increased confidence in the results obtained, if desired to provide a single result by combining the results of the photodiodes adjacent to the hybridization chambers. Those skilled in the art will appreciate that there may be from 1 to more than 1,000 different probes on the hybrid chamber array 110, depending on the analytical specifications. Humidifier and Humidity Sensor The AG zone of Figure 6 indicates the location of the humidifier 1 96. The humidifier prevents the reagents and probes from evaporating during operation of the LOC device 301. Preferably, as shown in the enlarged view of Figure 55, the reservoir 188 is in fluid communication with the three evaporators 1 90. The water reservoir 1 8 8 holds the molecular bio-grade water and is sealed during manufacture. As best seen in Figures 5 and 74, water is drawn by capillary action to three lowering ports 194 and along the individual water supply passages 192 to three of the evaporators 190 - 216 - 201209402 ascending port 193 sets. The meniscus is fixed to each of the risers 193 to retain water. The evaporator has a ring heater 191 that surrounds the riser 193. The ring heater 191 is connected to the top metal layer 195 of the CMOS circuit 86 by a conductive post 376 (see Figure 37). At startup, the ring heater 191 heats the water to evaporate and wet the surrounding devices.
圖6亦顯示濕度感測器232之位置。然而,最佳如圖 .6 7之AH區的放大圖所示,該濕度感測器具有電容式梳狀 結構。經微影蝕刻之第一電極296與經微影蝕刻之第二電 極298彼此相對’使得彼等之齒交插。該相對之電極形成 電容器,其具有可由CMOS電路86監測之電容。隨著濕 度增加,該等電極間之空氣隙的電容率增加,致使電容亦 增加。該濕度感測器2 3 2係鄰接雜交室陣列1 1 〇,該處之 濕度測量至爲重要以減緩含有該暴露探針之溶液蒸發。 反饋感測器 溫度及液體感測器被倂入LO C裝置3 0 1各處以提供 裝置操作期間之反饋及診斷。參照圖35,九個溫度感測器 1 7 〇被分配至擴增部1 1 2各處。同樣地,培養部1 1 4亦具 有九個溫度感測器1 7 0。這些感測器各使用2 X 2陣列之雙 極接面電晶體(BJT)以監測流體溫度及提供反饋至CMOS 電路86。該CMOS電路86利用此以準確地控制核酸擴增 期間的熱循環以及熱溶胞及培養期間之任何加熱。 於雜交室1 80中,CMOS電路86使用雜交加熱器182 作爲溫度感測器(見圖56)。該雜交加熱器182之電阻係溫 -217- 201209402 度依賴性,且該CMOS電路86利用此以導出各 180之溫度讀數。 該LOC裝置301亦具有一些MST通道液體 174及上蓋通道液體感測器208。圖35顯示在加熱 158之每隔一個彎道之一端的一排MST通道液體 174。最佳如圖37所示,該MST通道液體感測器 由該CMOS結構86中之頂金屬層195之暴露區域 之一對電極。液體封閉電極間的電流以指示其存在 器的位置。 圖25顯示上蓋通道液體感測器208之放大透 相對之TiAl電極對218及22 0係沉積於頂部層66 電極21 8及220之間爲間隙222,該間隙用於在缺 之情況下保持電路開啓。液體存在時關閉該電 CMOS電路86利用此反饋以監測流動。 非重力依賴性 測試模組1 〇係非方向依賴性。該等模組不需 至平穩表面才能操作》因毛細作用驅動之流體流以 連接至輔助設備之外部管路,使該模組確實爲可攜 簡易地插入至類似的可攜式手持閱讀器,諸如行動 具有非重力依賴性之操作代表該等測試模組亦有助 於所有實用範圍。彼等可耐受衝擊及振動,它們能 之載具上操作,或是當行動電話在移動時操作。 雜交室 感測器 微通道 感測器 174係 所形成 於感測 視圖。 上。在 少液體 络且該 被固定 及不須 式並可 電話。 於獨立 在移動 -218- 201209402Figure 6 also shows the location of the humidity sensor 232. However, as shown in the enlarged view of the AH zone of Fig. 67, the humidity sensor has a capacitive comb structure. The lithographically etched first electrode 296 and the lithographically etched second electrode 298 are opposite each other' such that their teeth are interleaved. The opposing electrode forms a capacitor having a capacitance that can be monitored by CMOS circuit 86. As the humidity increases, the permittivity of the air gap between the electrodes increases, causing the capacitance to increase. The humidity sensor 232 is adjacent to the array of hybridization chambers 1 1 where the humidity measurement is important to slow the evaporation of the solution containing the exposed probe. The feedback sensor temperature and liquid sensors are shunted into the LO C unit 310 to provide feedback and diagnostics during operation of the unit. Referring to Fig. 35, nine temperature sensors 1 7 〇 are assigned to the amplification unit 1 1 2 everywhere. Similarly, the culture unit 1 14 also has nine temperature sensors 170. These sensors each use a 2 X 2 array of bipolar junction transistors (BJT) to monitor fluid temperature and provide feedback to CMOS circuitry 86. The CMOS circuit 86 utilizes this to accurately control thermal cycling during nucleic acid amplification as well as thermal lysis and any heating during incubation. In hybrid chamber 180, CMOS circuit 86 uses hybridization heater 182 as a temperature sensor (see Figure 56). The resistance of the hybrid heater 182 is -217 - 201209402 degree dependent, and the CMOS circuit 86 utilizes this to derive temperature readings for each 180. The LOC device 301 also has a number of MST channel liquids 174 and an upper cover channel liquid sensor 208. Figure 35 shows a row of MST channel liquids 174 at one of the other corners of the heating 158. As best seen in Figure 37, the MST channel liquid sensor is opposed to one of the exposed regions of the top metal layer 195 in the CMOS structure 86. The liquid closes the current between the electrodes to indicate the location of their presence. Figure 25 shows an enlarged cross-sectional view of the upper lid channel liquid sensor 208. The TiAl electrode pairs 218 and 22 are deposited between the top layer 66 electrodes 21 8 and 220 as a gap 222 for holding the circuit in the absence of a circuit. Open. The electrical CMOS circuit 86 is turned off when the liquid is present to monitor the flow. Non-gravity dependent test module 1 is non-directional dependent. These modules do not require a smooth surface to operate. The fluid flow driven by the capillary action is connected to the external piping of the auxiliary device, so that the module is simply portable and can be easily inserted into a similar portable handheld reader. Operations such as non-gravity-dependent operations on behalf of these test modules also contribute to all practical areas. They can withstand shock and vibration, they can operate on the carrier, or when the mobile phone is moving. The hybrid chamber sensor microchannel sensor 174 is formed in the sensing view. on. In the case of less liquid, it is fixed and not required and can be telephone. Independence on the move -218- 201209402
核酸擴增變體 直接PCRNucleic acid amplification variant
習慣上,PCR需要在製備反應混合物之前廣泛地純化 標靶DNA。然而,利用化學性質及樣品濃度之適當變化, 有可能僅需最少之DNA純化即可進行核酸擴增或直接擴 增。當該核酸擴增程序係PCR時,此方法便稱做直接PCR 。當核酸擴增係於經控制之恆溫下之LOC裝置中進行時 ,此方法係直接恆溫擴增。直接核酸擴增技術用於LOC 裝置時具有顯著優勢,尤其是關於簡化所需之流體設計。 直接PCR或直接恆溫擴增之擴增化學的調整包括提高緩衝 液強度,使用具高活性及處理性(processivity)之聚合酶及 與潛在聚合酶抑制劑螯合之添加物。稀釋樣品中之抑制劑 亦爲重要的。 爲了利用直接核酸擴增技術,該LOC裝置設計併入 兩個額外特徵。該第一特徵爲試劑貯器(例如圖8中之貯 器58),其係經適當地尺寸化以供應充分量之擴增反應混 合物或稀釋劑,以使可能干擾擴增化學之該樣品成分的最 終濃度夠低以允許成功地進行核酸擴增。該非細胞性樣品 成分之所欲稀釋倍數係介於5倍至20倍。當適當時會使 用不同的L0C結構以確認維持夠高之標靶核酸序列濃度 以供擴增及檢測,例如圖4中之病原體透析部70。於此實 施態樣中(進一步於圖6中說明),在樣品萃取部290上游 使用有效地濃縮小到得以進入擴增部292之病原體的濃度 並將較大細胞排出至廢料容器76之透析部。於另一實施 -219 - 201209402 態樣中,使用透析部以選擇性地去除血漿中之蛋白質及鹽 而保留受到關注之細胞。Conventionally, PCR requires extensive purification of the target DNA prior to preparation of the reaction mixture. However, with appropriate changes in chemical properties and sample concentrations, it is possible to perform nucleic acid amplification or direct amplification with minimal DNA purification. When the nucleic acid amplification program is PCR, this method is called direct PCR. When the nucleic acid amplification is carried out in a controlled constant temperature LOC unit, the method is directly thermostated. Direct nucleic acid amplification techniques have significant advantages when used in LOC devices, especially with regard to simplifying the fluid design required. Adjustments to the amplification chemistry of direct PCR or direct isothermal amplification include increasing buffer strength, using high activity and processivity polymerases and additions to potential polymerase inhibitors. It is also important to dilute the inhibitor in the sample. To take advantage of direct nucleic acid amplification techniques, the LOC device design incorporates two additional features. The first feature is a reagent reservoir (e.g., reservoir 58 in Figure 8) that is suitably sized to supply a sufficient amount of amplification reaction mixture or diluent to cause the sample component that may interfere with the amplification chemistry. The final concentration is low enough to allow for successful nucleic acid amplification. The desired dilution factor of the non-cellular sample component is between 5 and 20 times. Different L0C structures are used where appropriate to confirm that a sufficiently high target nucleic acid sequence concentration is maintained for amplification and detection, such as the pathogen dialysis section 70 of Figure 4. In this embodiment (further illustrated in Figure 6), a concentration that effectively concentrates the pathogens that are small enough to enter the amplification section 292 and discharges the larger cells to the dialysis section of the waste container 76 is used upstream of the sample extraction section 290. . In another embodiment -219 - 201209402, a dialysis section is used to selectively remove proteins and salts in plasma while retaining cells of interest.
支持直接核酸擴增之第二LOC結構性特徵爲通道深 寬比之設計以調整該樣品及擴增混合成分之間的混合比。 舉例來說,爲確保與該樣品有關之抑制劑經由單一混合步 驟而被稀釋至較佳的5倍至20倍範圍中,該樣品及試劑 通道之長度與截面係經設計以使位於混合開始位置之上游 的樣品通道具有相較於該試劑混合物流動之通道的流阻抗 高出4倍至1 9倍之流阻抗。經由控制設計幾何可輕易地 控制微通道之流阻抗。以固定之截面積而言,微通道之流 阻抗隨通道長度呈線性增加。對於混合設計而言重要的是 ,微通道中之流阻抗最主要取決於最小之截面積尺寸。例 如,當深寬比極爲不均一時,具有方形截面之微通道的流 組抗與最小垂直尺寸之立方成反比。A second LOC structural feature that supports direct nucleic acid amplification is the channel aspect ratio design to adjust the mixing ratio between the sample and the amplified mixed components. For example, to ensure that the inhibitor associated with the sample is diluted to a preferred range of 5 to 20 times via a single mixing step, the length and cross-section of the sample and reagent channels are designed to be at the beginning of the mixing The upstream sample channel has a flow impedance that is 4 to 19 times higher than the flow impedance of the channel through which the reagent mixture flows. The flow impedance of the microchannel can be easily controlled by controlling the design geometry. In terms of a fixed cross-sectional area, the flow impedance of the microchannel increases linearly with the length of the channel. Important for hybrid designs, the flow impedance in the microchannel is most dependent on the smallest cross-sectional area. For example, when the aspect ratio is extremely non-uniform, the flow resistance of a microchannel having a square cross section is inversely proportional to the cube of the smallest vertical dimension.
反轉錄酶PCR(RT-PCR) 當分析或萃取之樣品核酸種類係RNA時,諸如來自 RNA病毒或信使RNA,首先必須將RNA反轉錄爲互補 DNA(cDNA)然後才能進行PCR擴增。該反轉錄反應可於 與PCR相同之室中實施(一步驟RT-PCR),或是其可爲分 開進行之初始反應(二步驟RT-PCR)。於此所述之LOC變 體中,一步驟RT-PCR可簡單地藉由添加反轉錄酶至含有 聚合酶之試劑貯器62及程式化該加熱器1 54以先進行反 轉錄步驟然後才進行核酸擴增步驟加以實施。二步驟RT- -220- 201209402 PCR亦可藉由利用該試劑貯器58以儲存及分配該等緩衝 液、引子、dNTP及反轉錄酶,利用培養部114以進行反 轉錄步驟,接著於擴增部112中以普通方式進行擴增加以 簡單地完成。 恆溫核酸擴增 針對一些應用而言,恆溫核酸擴增係較佳之核酸擴增Reverse Transcriptase PCR (RT-PCR) When the sample nucleic acid species analyzed or extracted are RNA, such as from RNA viruses or messenger RNAs, the RNA must first be reverse transcribed into complementary DNA (cDNA) before PCR amplification. The reverse transcription reaction can be carried out in the same chamber as the PCR (one-step RT-PCR), or it can be an initial reaction (two-step RT-PCR). In the LOC variants described herein, a one-step RT-PCR can be performed by simply adding a reverse transcriptase to a reagent reservoir 62 containing the polymerase and staging the heater 1 54 to perform the reverse transcription step. The nucleic acid amplification step is carried out. The second step RT-220-201209402 PCR can also use the reagent reservoir 58 to store and distribute the buffer, primer, dNTP and reverse transcriptase, and use the culture unit 114 to perform the reverse transcription step, followed by amplification. Amplification in the section 112 in a conventional manner is simply accomplished. Thermostatic Nucleic Acid Amplification For some applications, thermophilic nucleic acid amplification is preferred for nucleic acid amplification.
方法,因此該反應成分不需要經過不同溫度之重複循環, 而是使該擴增部維持於通常約爲37°C至41°C之恆溫下。 —些恆溫核酸擴增方法已被描述,包括股取代擴增(SDA) 、轉錄介導擴增(TMA)、核酸序列基底擴增(NASBA)、重 組酶聚合酶擴增(RPA)、解螺旋酶依賴性恆溫DNA擴增 (HDA)、滾動循環擴增(RCA)、分枝型擴增(RAM)及環媒介 性恆溫擴增(LAMP) ’這些方法中之任何方法或其他恆溫 擴增方法可被用於此處所述之LOC裝置之特定實施態樣 • 中。 爲了實施恆溫核酸擴增,該鄰接擴增部之試劑貯器6〇 及62將載有用於特定恆溫方法之適當的試劑而不是載有 P C R擴增混合物及聚合酶。例如以s D A而言,該試劑貯 器60含有擴增緩衝液、引子及dNTP,該試劑貯器62含 有適當之核酸內切酶及外切-DN A聚合酶。以RPA而言, 該試劑F'T器0 0含有擴增緩衝液、引子、d Ν τ P及重組酶蛋 白,該試劑貯器62含有股取代DNA聚合酶,諸如Bsu〇 同樣地,以HDA而言,該試劑貯器6〇含有擴增緩衝液、 -221 201209402 引子及dNTP,該試劑貯器62含有適當之DNA聚合酶及 解螺旋酶以解開雙股DNA而非使用熱。熟此技藝者將了 解’可將必要試劑以任何適用於該核酸擴增法之方式分配 於該兩個試劑貯器》 以擴增來自RNA病毒諸如HIV或C型肝炎病毒之病 毒性核酸而言,NASBA或TMA係適當的因其不需先將 RNA轉錄成cdNA。於此實例中,試劑貯器60塡充有擴 增緩衝液' 引子及dNTP,試劑貯器62塡充有RNA聚合 酶、反轉錄酶及任意的RNase Η。 一些恆溫核酸擴增之形式必須具有初始變性循環以分 開雙股之DNA模板,然後才維持適合恆溫核酸擴增之溫 度以利反應進行。此可於本文描述之所有LOC裝置之實 施態樣中輕易達成,因爲在擴增部112中之混合的溫度可 藉由該擴增微通道158中之加熱器154加以仔細控制(見 圖 14)。 恆溫核酸擴增對於樣品中潛在的抑制劑之耐受性較高 ,因而通常適用於希望自樣品進行直接核酸擴增之情況。 因此,恆溫核酸擴增有時可用於分別顯示於圖82、83及 84 中之 LOC 變體 XLIII 673、LOC 變體 XLIV 674 及 LOC 變體XLVII 677等。直接恆溫擴增亦可與如圖82及84中 所示之一或多個擴增前透析步驟70、686或682,及/或如 圖83中所示之雜交前透析步驟682組合,以分別於核酸 擴增之前幫助樣品中之標靶細胞的部份濃縮,或是於樣品 進入雜交室陣列110前移除不想要之細胞碎片。熟此技藝 -222- 201209402 者將了解任何擴增前透析及雜交前透析之組合皆可被使用 0 恆溫核酸擴增亦可於平行的擴增部諸如圖78、79及 80所示意者中進行,多工及一些恆溫核酸擴增之方法諸如 LAMP係與初始反轉錄步驟相容以擴增rnA。 螢光檢測系統之其他細節By the method, therefore, the reaction components do not need to be subjected to repeated cycles of different temperatures, but the amplifying portion is maintained at a constant temperature of usually about 37 ° C to 41 ° C. Some thermostated nucleic acid amplification methods have been described, including strand-substituted amplification (SDA), transcription-mediated amplification (TMA), nucleic acid sequence basal amplification (NASBA), recombinase polymerase amplification (RPA), unwinding Any of these methods, or other isostatic amplification methods, for enzyme-dependent isothermal DNA amplification (HDA), rolling cycle amplification (RCA), branched-type amplification (RAM), and circular media constant temperature amplification (LAMP) It can be used in specific implementations of the LOC devices described herein. In order to perform a thermostatic nucleic acid amplification, the reagent reservoirs 6A and 62 of the adjacent amplification section will carry an appropriate reagent for a specific constant temperature method instead of carrying the PCR amplification mixture and the polymerase. For example, in the case of s D A , the reagent reservoir 60 contains an amplification buffer, an primer, and dNTP, and the reagent reservoir 62 contains an appropriate endonuclease and an exo-DN A polymerase. In the case of RPA, the reagent F'T0 0 contains amplification buffer, primer, d Ν τ P and recombinase protein, and the reagent reservoir 62 contains a strand-substituted DNA polymerase, such as Bsu 〇, similarly to HDA. For example, the reagent reservoir 6 contains an amplification buffer, -221 201209402 primer and dNTP, and the reagent reservoir 62 contains a suitable DNA polymerase and helicase to unwind the double strand DNA instead of using heat. Those skilled in the art will appreciate that 'the necessary reagents can be dispensed into the two reagent reservoirs in any manner suitable for the nucleic acid amplification method to amplify viral nucleic acids from RNA viruses such as HIV or hepatitis C virus. NASBA or TMA is appropriate because it does not require the transcription of RNA into cdNA. In this example, the reagent reservoir 60 is filled with an expansion buffer' primer and dNTP, and the reagent reservoir 62 is filled with an RNA polymerase, a reverse transcriptase, and an arbitrary RNase. Some forms of thermostatic nucleic acid amplification must have an initial denaturation cycle to separate the double stranded DNA template before maintaining the temperature suitable for constant temperature nucleic acid amplification for the reaction to proceed. This can be easily achieved in embodiments of all of the LOC devices described herein because the temperature of the mixing in the amplification section 112 can be carefully controlled by the heater 154 in the amplification microchannel 158 (see Figure 14). . Thermostatic nucleic acid amplification is more tolerant to potential inhibitors in the sample and is therefore generally suitable for situations where direct nucleic acid amplification from the sample is desired. Therefore, thermostatic nucleic acid amplification can sometimes be used for LOC variant XLIII 673, LOC variant XLIV 674 and LOC variant XLVII 677, etc., respectively, shown in Figures 82, 83 and 84. Direct thermostatic amplification can also be combined with one or more of the pre-amplification dialysis steps 70, 686 or 682 as shown in Figures 82 and 84, and/or the pre-hybridization dialysis step 682 as shown in Figure 83, respectively. Part of the target cells in the sample are concentrated prior to nucleic acid amplification, or unwanted cell debris is removed before the sample enters the hybridization chamber array 110. Those skilled in the art will appreciate that any combination of pre-amplification dialysis and pre-hybridization dialysis can be used. 0 Constant temperature nucleic acid amplification can also be performed in parallel amplifications such as those shown in Figures 78, 79 and 80. Multiplex and some methods of constant temperature nucleic acid amplification such as the LAMP line are compatible with the initial reverse transcription step to amplify rnA. Other details of the fluorescent detection system
圖58及59顯示雜交-反應性FRET探針236。這些探 針經常被稱爲分子信標,係爲由單股核酸產生之莖環探針 ’當與互補核酸雜交時發出螢光。圖58顯示於與標靶核 酸序列23 8雜交前之單一FRET探針23 6。該探針具有環 240、莖242、於5'端之螢光團246及於3'端之淬熄劑248 。該環240係由與標靶核酸序列23 8互補之序列組成。該 探針序列兩側之互補序列黏合在一起以形成莖242。 當互補性標靶序列不存在時,該探針如圖58所示維 持閉合。該莖242保持該螢光團-淬熄劑對互相靠近,以 使彼等之間可發生顯著之共振能量轉移,實質上消除該營 光團被激發光244照射時發射螢光之能力。 圖59顯示呈打開或經雜交構型之FRET探針23 6。當 與互補性標靶核酸序列238雜交時,該莖環結構被破壞, 該螢光團及淬熄劑於空間上分離,因此恢復該螢光團246 發出螢光的能力。該螢光發射250係經光學檢測以作爲該 探針已雜交之指標。 該探針以極高之專一性與互補標靶雜交,因爲該探針 223- 201209402 之莖螺旋被設計成相較於具有不互補之單一核苷酸之探 針-標靶螺旋更爲穩定。由於雙股DNA相當堅固,因此該 探針-標靶螺旋與莖螺旋不可能在立體空間中共存。 與引子連接之探針 與引子連接之莖環探針及與引子連接之線性探針(又 名蠍子型探針)係替代性之分子信標,可被用於LOC裝置 中以供即時及定量核酸擴增。即時擴增可直接在該LOC 裝置之雜交室中進行。使用與引子連接之探針之優點爲該 探針元件係實際與引子連接,因此在核酸擴增期間僅需發 生單次雜交事件而不需要分開的引子雜交及探針雜交。此 確保即時有效地反應,相較於使用分開的引子及探針時產 生更強的信號 '更短的反應時間且具有更佳的識別度。該 等探針(與聚合酶及擴增混合物)將於製造期間被沉積在雜 交室180中,不需在該LOC裝置上設置分開之擴增部。 或者,該擴增部未被使用或用於其他反應》 與引子連接之線性探針 圖85及86分別顯示在第一輪核酸擴增期間與引子連 接之線性探針692及在後續核酸擴增期間呈雜交組態之與 引子連接之線性探針。參照圖85,該與引子連接之線性探 針692具有雙股之莖區段242。其中一股倂入與標靶核酸 上之區域696同源之與引子連接之探針序列696,且在彼 之5'端係以螢光團246標記,在彼之3’端係經擴增阻斷物 -224- 201209402 6 94與寡核苷酸引子700連接。該莖242之另一股之3’端 係以淬熄劑基團248標記。在完成第一輪之核酸擴增之後 ,該探針可捲起並與具有序列698(現呈互補)之延伸股雜Figures 58 and 59 show hybridization-reactive FRET probes 236. These probes are often referred to as molecular beacons, which are stem-loop probes produced by single-stranded nucleic acids that emit fluorescence when hybridized to complementary nucleic acids. Figure 58 shows a single FRET probe 23 6 prior to hybridization to the target nucleic acid sequence 23 8 . The probe has a ring 240, a stem 242, a fluorophore 246 at the 5' end, and a quencher 248 at the 3' end. This loop 240 is composed of a sequence complementary to the target nucleic acid sequence 238. The complementary sequences flanking the probe sequence are bonded together to form stem 242. When the complementary target sequence is absent, the probe is closed as shown in Figure 58. The stem 242 maintains the fluorophore-quenching agent pairs in close proximity to each other such that significant resonance energy transfer can occur between them, substantially eliminating the ability of the luminaire to emit fluorescence upon exposure to the excitation light 244. Figure 59 shows FRET probe 23 6 in an open or hybridized configuration. Upon hybridization to the complementary target nucleic acid sequence 238, the stem-loop structure is disrupted and the fluorophore and quencher are spatially separated, thereby restoring the ability of the fluorophore 246 to emit fluorescence. The fluorescent emission 250 is optically detected as an indicator that the probe has hybridized. The probe hybridizes to the complementary target with very high specificity because the stem helix of probe 223-201209402 is designed to be more stable than the probe-target helix with a non-complementary single nucleotide. Since the double-stranded DNA is quite robust, the probe-target helix and the stem helix cannot coexist in the stereoscopic space. The probe-attached probe and primer-attached stem-loop probe and the primer-connected linear probe (also known as the scorpion-type probe) are alternative molecular beacons that can be used in LOC devices for immediate and quantitative Nucleic acid amplification. Immediate amplification can be performed directly in the hybridization chamber of the LOC device. An advantage of using a probe coupled to a primer is that the probe element is actually linked to the primer, so that only a single hybridization event is required during nucleic acid amplification without the need for separate primer hybridization and probe hybridization. This ensures an immediate and efficient response, resulting in a stronger signal than the use of separate primers and probes, 'shorter reaction time and better recognition. The probes (and polymerase and amplification mixture) will be deposited in the hybrid chamber 180 during manufacture without the need to provide separate amplifications on the LOC device. Alternatively, the amplification portion is not used or used for other reactions. Linear probes linked to the primers. Figures 85 and 86 show linear probes 692 linked to the primer during the first round of nucleic acid amplification, respectively, and subsequent nucleic acid amplification. A linear probe that is hybridized to the primer during the hybrid configuration. Referring to Figure 85, the linear probe 692 coupled to the lead has a double stem section 242. One of the probes 696, which is homologous to the region 696 on the target nucleic acid, is linked to the primer, and is labeled with a fluorophore 246 at the 5' end thereof, and amplified at the 3' end of the other. Blocker-224-201209402 6 94 was ligated to oligonucleotide primer 700. The 3' end of the other strand of the stem 242 is labeled with a quencher group 248. After completing the first round of nucleic acid amplification, the probe can be rolled up and extended with a stretch of strands having sequence 698 (now complementary)
交。於首輪核酸擴增期間,該寡核苷酸引子700與該標靶 DNA 23 8 (圖85)黏合然後延伸,形成含有該探針序列及擴 增產物兩者之DNA股。該擴增阻斷物694防止聚合酶讀 取及複製該探針區域696。當後續變性時,該經延伸之寡 核苷酸引子700/模板雜交體係經分離,該與引子連接之線 性探針之雙股莖242亦經分離,因此釋放淬熄劑248。當 溫度降低以進行黏合及延伸步驟時,該與引子連接之線性 探針的與引子連接之探針序列696捲起,並與該延伸股上 經擴增之互補序列698雜交,並可檢測出顯示該標靶DNA 存在之螢光。未經延伸的與引子連接之線性探針保留彼之 雙股莖且螢光保持淬熄。此檢測方法特別適用於快速檢測 系統,因其只需單一分子處理。cross. During the first round of nucleic acid amplification, the oligonucleotide primer 700 is affixed to the target DNA 23 8 (Fig. 85) and then extended to form a DNA strand containing both the probe sequence and the amplification product. The amplification blocker 694 prevents the polymerase from reading and replicating the probe region 696. Upon subsequent denaturation, the extended oligonucleotide primer 700/template hybridization system is separated, and the double stem 242 of the linear probe linked to the primer is also separated, thereby releasing the quencher 248. When the temperature is lowered for the bonding and extension step, the primer-linked probe sequence 696 of the linear probe linked to the primer is rolled up and hybridized with the amplified complementary sequence 698 on the extended strand, and the display can be detected. Fluorescence of the target DNA. The unexpanded linear probe attached to the primer retains the double stem and the fluorescence remains quenched. This test method is especially suitable for fast detection systems because it requires only a single molecule treatment.
與引子連接之莖環探針 圖87A至87F顯示與引子連接之莖環探針704之操作 。參照圖87A,該與引子連接之莖環探針7 04具有互補雙 股DNA之莖242及倂有探針序列之環240。其中一個莖股 708之5’端係經螢光團246標記。另一股710係經3’-端淬 熄劑248標記,且帶有擴增阻斷物694及寡核苷酸引子 700兩者。於初始變性相期間(見圖87B),該標靶核酸238 之股分開,該與引子連接之莖環探針704之莖242亦分開 -225- 201209402 。當溫度冷卻以進行黏合相時(見圖87C),在該與引子連 接之莖環探針704上之寡核苷酸引子700與該標靶核酸序 列2 3 8雜交。於延伸期間(見圖8 7D),該標靶核酸序列 23 8之互補序列706係經合成以形成含有該探針序列704 及擴增產物兩者之DNA股。該擴增阻斷物694防止聚合 酶讀取及複製該探針區域704。當該探針在變性之後進行 黏合時,該與引子連接之莖環探針之環區段240之探針序 列(見圖8 7F)與該延伸股上之互補序列706黏合。此構型 使得該螢光團246與淬熄劑248相距甚遠,造成顯著增強 之螢光發射。 對照探針 雜交室陣列1 1 〇包括具有用於分析品質控制之陽性及 陰性對照探針之一些雜交室180。圖100及101示意說明 不含螢光團796之陰性對照探針,圖1〇2及103顯示不含 淬熄劑79 8之陽性對照探針。該陽性及陰性對照探針具有 如前述之FRET探針之莖環結構。然而,不論該等探針係 雜交成爲開放構型或保持封閉,該陽性對照探針7 9 8 —定 會發射螢光信號2 5 0,而該陰性對照探針796永遠不發射 螢光信號2 50 » 參照圖1〇〇及101,該陰性對照探針796不具螢光團( 其可具有或不具有淬熄劑248)。因此,不論該標靶核酸序 列23 8與探針雜交(見圖1〇1)或是該探針保持彼之莖環構 型(見圖1〇〇),皆可忽略對激發光244之反應。或者,可 -226- 201209402 設計陰性對照探針796使得其永遠保持淬熄。舉例來說, 藉由合成具有不與該硏究樣品中之任何核酸序列雜交之探 針序列的環240,該探針分子之莖242將自行重新雜交, 而使該螢光團及淬熄劑保持緊密相鄰而不發射可見之螢光 信號。此陰性對照信號對應於來自雜交室180之少量發射 ’其中該等探針未經雜交但該淬熄劑並未淬熄來自報導劑 之所有發射。Stem ring probe attached to the primer Figure 87A to 87F show the operation of the stem probe 704 attached to the primer. Referring to Fig. 87A, the primer-connected stem-loop probe 76 has a stem 242 of complementary double-stranded DNA and a loop 240 having a probe sequence. The 5' end of one of the stems 708 is labeled with a fluorophore 246. Another 710 line is labeled with a 3'-end quencher 248 and carries both amplification blocker 694 and oligonucleotide primer 700. During the initial denaturing phase (see Figure 87B), the strands of the target nucleic acid 238 are separated, and the stem 242 of the stem-loop probe 704 attached to the primer is also separated -225-201209402. When the temperature is cooled to effect the binding phase (see Figure 87C), the oligonucleotide primer 700 on the stem loop probe 704 attached to the primer hybridizes to the target nucleic acid sequence 2 3 8 . During extension (see Figure 8 7D), the complementary sequence 706 of the target nucleic acid sequence 23 is synthesized to form a DNA strand containing both the probe sequence 704 and the amplification product. The amplification blocker 694 prevents the polymerase from reading and replicating the probe region 704. When the probe is bonded after denaturation, the probe sequence of the loop segment 240 of the stem-loop probe attached to the primer (see Figure 8 7F) is bonded to the complementary sequence 706 on the stretched strand. This configuration causes the fluorophore 246 to be at a great distance from the quencher 248, resulting in significantly enhanced fluorescence emission. Control Probes Hybridization chamber arrays 1 1 〇 include some hybridization chambers 180 with positive and negative control probes for analytical quality control. Figures 100 and 101 schematically illustrate negative control probes without fluorophore 796, and Figures 〇2 and 103 show positive control probes without quencher 79 8 . The positive and negative control probes have a stem-loop structure as described above for the FRET probe. However, regardless of whether the probes hybridize to an open configuration or remain closed, the positive control probe 79 will emit a fluorescent signal 250, and the negative control probe 796 will never emit a fluorescent signal 2 50 » Referring to Figures 1A and 101, the negative control probe 796 does not have a fluorophore (which may or may not have a quencher 248). Thus, regardless of whether the target nucleic acid sequence 23 8 hybridizes to the probe (see Figure 1-1) or the probe maintains its stem-loop configuration (see Figure 1A), the reaction to excitation light 244 can be ignored. . Alternatively, the negative control probe 796 can be designed to keep quenching forever. For example, by synthesizing a loop 240 having a probe sequence that does not hybridize to any of the nucleic acid sequences in the study sample, the stem 242 of the probe molecule will self-hybridize itself, allowing the fluorophore and quencher Stay close together without emitting visible fluorescent signals. This negative control signal corresponds to a small amount of emission from the hybridization chamber 180 where the probes are not hybridized but the quencher does not quench all of the emission from the reporter.
相反地’不含淬熄劑之陽性對照探針7 9 8係如圖1 0 2 及103中所示建構。不論該陽性對照探針798是否與標靶 核酸序列238雜交,皆無物質會使來自螢光團246回應激 發光244之螢光發射250淬熄。 圖52顯示雜交室陣列110中陽性及陰性對照探針(分 別爲3 78及3 80)之可能分佈。該對照探針3 78及3 8 0被放 置在位於橫越雜交室陣列1 1 0之線上的雜交室1 8 0中。然 而,該等對照探針於陣列內之配置係任意的(如同雜交室 陣列1 1 〇之組態)。 螢光團設計 需要具有長螢光壽命之螢光團,這是爲了讓激發光有 足夠之時間得以衰變至相較於在致能光感應器44時之螢 光發射的強度爲低之強度,藉此提供足夠之信噪比。而且 ,較長之螢光壽命代表較大之整合的螢光光子計數。 該螢光團246(見圖59)之螢光壽命大於100奈秒、經 常大於200奈秒、更常見爲大於3 00奈秒,以及於大多數 -227- 201209402 的情況中大於4 0 0奈秒。 以過渡金屬或鑭系金屬爲底的金屬-配位子錯合物具 長壽命(自數百奈秒至毫秒)、適當的量子產率及高度熱、 化學及光化學穩定性,此等特性均爲對螢光檢測系統需求 有利之特性。 特別經徹底硏究之以過渡金屬離子釕(Ru(ii))爲底之 金屬-配位子錯合物爲參(2,2'-聯吡啶)釕(11)([1111〇?7)3]2 + ) ,彼之壽命約Ιμδ。此錯合物可購自Biosearch Technologies ,其商品名爲Pulsar 650。 表1 : Pulsar 6 5 0(釕螯合物)之光物理性質Conversely, the positive control probe without the quencher was constructed as shown in Figures 102 and 103. Regardless of whether the positive control probe 798 is hybridized to the target nucleic acid sequence 238, no material will quench the fluorescent emission 250 from the fluorophore 246 back to the luminescent 244. Figure 52 shows the possible distribution of positive and negative control probes (3 78 and 380, respectively) in hybridization chamber array 110. The control probes 3 78 and 380 were placed in a hybridization chamber 1 80 located on the line across the hybridization chamber array 110. However, the configuration of the control probes within the array is arbitrary (like the configuration of the hybrid chamber array 1 1 )). The fluorophore design requires a fluorophore with a long fluorescent lifetime, which is to allow the excitation light to have sufficient time to decay to a low intensity compared to the intensity of the fluorescent emission when the photosensor 44 is enabled. This provides a sufficient signal to noise ratio. Moreover, a longer fluorescent lifetime represents a larger integrated fluorescence photon count. The fluorescence lifetime of the fluorophore 246 (see Figure 59) is greater than 100 nanoseconds, often greater than 200 nanoseconds, more typically greater than 300 nanoseconds, and greater than 4000 in most cases of -227-201209402. second. Metal-coordination complexes based on transition metals or lanthanide metals have long lifetimes (from hundreds of nanoseconds to milliseconds), appropriate quantum yields, and high thermal, chemical, and photochemical stability. Both are advantageous for the needs of fluorescent detection systems. In particular, the metal-coordination complex based on the transition metal ion ruthenium (Ru(ii)) is ginseng (2,2'-bipyridyl) ruthenium (11) ([1111〇?7). 3] 2 + ), the life of the latter is about Ιμδ. This complex is commercially available from Biosearch Technologies under the trade name Pulsar 650. Table 1: Photophysical properties of Pulsar 6 5 0 (钌 chelate)
參數 符號 値 單元 吸收波長 ^abs 460 nm 發射波長 ^em 650 nm 吸光係數 E 14800 M-1 cm·1 螢光壽命 Tf 1.0 μδ 量子產率 Η 1(去氧的) N/A 铽螯合物是一種鑭系金屬-配位子錯合物,其已被證 實可成功作爲FRET探針系統之螢光報導劑,且具有 1 600μβ之長壽命。 -228- 201209402 表2 :铽螯合物之光物理性質 參數 符號 値 單元 吸收波長 ^abs 330-350 nm 發射波長 λέπι 548 nm 吸光係數 Ε 13800 (具Us及配位子依賴性,可高至30000 @ Xe=340nm) 螢光壽命 Xf 1600 (雜交的探針) μδ 量子產率 Η 1 (配位子依賴性) Ν/ΑParameter symbol 値 unit absorption wavelength ^abs 460 nm emission wavelength ^em 650 nm absorption coefficient E 14800 M-1 cm·1 fluorescence lifetime Tf 1.0 μδ quantum yield Η 1 (deoxidized) N/A 铽 chelate is A lanthanide metal-coordination complex that has been shown to be successful as a fluorescent reporter for the FRET probe system and has a long lifetime of 1 600 μβ. -228- 201209402 Table 2: Photophysical properties of ruthenium chelate parameters Symbol 値 Unit absorption wavelength ^abs 330-350 nm Emission wavelength λέπι 548 nm Absorption coefficient Ε 13800 (with Us and ligand dependence, up to 30,000 @ Xe=340nm) Fluorescence lifetime Xf 1600 (hybridized probe) μδ quantum yield Η 1 (coordination dependent) Ν/Α
該LOC裝置3 0 1所使用之螢光檢測系統不利用過濾 器移除不想要之背景螢光。因此若該淬熄劑248爲了增 加信噪比而無天然發射則具有優勢。無天然發射之淬熄 劑248就不會貢獻背景螢光。高淬熄效率亦爲重要,因 此在雜交事件發生前沒有螢光。購自加州Novato市之 Biosearch Technologies, Inc.的黑洞萍熄劑(BHQ)不具有天 φ 然發射且具有高淬熄效率,係適用於本系統之淬熄劑。 BHQ-1之最大吸收値發生於534 nm,淬熄範圍爲480-580 nm,使其適合用於淬熄Tb-螯合螢光團。BHQ-2之最大吸 收値發生於579 nm,淬熄範圍爲560-670 nm,使其適合 用於淬媳Pulsar 650。 購自愛荷華州 Coralville 市之 Integrated DNA Technologies 的愛荷華黑淬熄劑(Iowa Black FQ及RQ)爲合適之替代性 淬熄劑,其具有少許或無背景發射。Iowa Black FQ之淬 熄範圍自420至620 nm,於531 nm具有最大吸收値,因 -229- 201209402 此適合用來作爲Tb-螯合螢光團之淬熄劑。Iowa Black RQ 之最大吸收値發生於656 nm,淬熄範圍自500至700 nm ,使其成爲Pulsar 6 5 0之理想淬熄劑。 於本文所述之實施態樣中,淬熄劑2 4 8爲初始時即附 著於探針之功能性基團,但於其他實施態樣中,淬熄劑有 可能是游離於溶液中之分開分子。The fluorescent detection system used by the LOC device 310 does not utilize filters to remove unwanted background fluorescence. Therefore, if the quencher 248 has no natural emission in order to increase the signal to noise ratio, it is advantageous. The quencher 248 without natural emission does not contribute to background fluorescence. High quenching efficiency is also important, so there is no fluorescence before the hybridization event occurs. Black Hole Cleaner (BHQ), available from Biosearch Technologies, Inc. of Novato, Calif., does not have a natural emission and has high quenching efficiency and is suitable for use in the quenching agent of this system. The maximum absorption enthalpy of BHQ-1 occurs at 534 nm and the quenching range is 480-580 nm, making it suitable for quenching Tb-chelating fluorophores. The maximum absorption enthalpy of BHQ-2 occurs at 579 nm and the quenching range is 560-670 nm, making it suitable for quenching Pulsar 650. Iowa Black FQ and RQ from Integrated DNA Technologies, Coralville, Iowa, are suitable alternative quenchers with little or no background emission. The Iowa Black FQ has a quenching range from 420 to 620 nm with a maximum absorption enthalpy at 531 nm, which is suitable for use as a quencher for Tb-chelating fluorophores at -229-201209402. The maximum absorption enthalpy of Iowa Black RQ occurs at 656 nm and the quenching range is from 500 to 700 nm, making it an ideal quencher for Pulsar 6 50. In the embodiment described herein, the quencher 248 is a functional group attached to the probe initially, but in other embodiments, the quencher may be separated from the solution. molecule.
激發源 在本文描述之以螢光檢測爲基底之實施態樣中,選擇 LED作爲激發源以替代雷射二極體、高功率燈或雷射,因 爲LED之低功率消耗、低成本和小尺寸。參照圖88, LED 26係直接安置於該LOC裝置301之外部表面的雜交 室陣列1 1 0之上。在該雜交室陣列1 1 0之對側爲光感應器 44,其由用於檢測來自各室之螢光訊號之光電二極體184 的陣列組成(見圖53、54及68)。Excitation source In the implementation of the fluorescence detection as the substrate described in this paper, the LED is selected as the excitation source instead of the laser diode, high power lamp or laser because of the low power consumption, low cost and small size of the LED. . Referring to Fig. 88, LEDs 26 are disposed directly above hybrid array array 110 of the outer surface of LOC device 301. Opposite the array of hybridization chambers 110 is a light sensor 44 consisting of an array of photodiodes 184 for detecting fluorescent signals from the chambers (see Figures 53, 54 and 68).
圖89、90及91示意性說明用於暴露探針於激發光之 其他實施態樣。在如圖89所示之LOC裝置30中,由激 發LED 26所產生之激發光2 44係由透鏡254導向雜交室 陣列1 10之上。該激發LED 26係經脈衝且由光感應器44 檢測螢光發射。 在如圖90所示之LOC裝置30中,由激發LED 26所 產生之激發光244係由透鏡254、第一光學稜鏡712和第 二光學稜鏡714導向雜交室陣列110之上。該激發LED 26係經脈衝且由光感應器44檢測螢光發射。 -230- 201209402 同樣地,在如圖91所示之LOC裝置30中,由激發 LED 26所產生之激發光244係由透鏡254、第一鏡716和 第二鏡718導向雜交室陣列11〇之上。再者,該激發[ED 26係經脈衝且由光感應器44檢測螢光發射。Figures 89, 90 and 91 schematically illustrate other embodiments for exposing the probe to excitation light. In the LOC device 30 shown in Fig. 89, the excitation light 2 44 generated by the excitation LED 26 is directed by the lens 254 onto the hybridization cell array 110. The excitation LED 26 is pulsed and the fluorescent sensor 44 detects the fluorescent emission. In the LOC device 30 as shown in Fig. 90, the excitation light 244 generated by the excitation LED 26 is directed by the lens 254, the first optical stop 712 and the second optical stop 714 over the hybridization chamber array 110. The excitation LED 26 is pulsed and the fluorescent sensor 44 detects the fluorescent emission. Similarly, in the LOC device 30 shown in FIG. 91, the excitation light 244 generated by the excitation LED 26 is directed to the hybridization chamber array 11 by the lens 254, the first mirror 716, and the second mirror 718. on. Furthermore, the excitation [ED 26 is pulsed and the fluorescence emission is detected by the light sensor 44.
該LED 26之激發波長係取決於蛋光染料的選擇。 Philips LXK2-PR14-R00 係針對 Pulsar 650 染料之適當激 發源。SET UVT0P3 3 5T039BL LED係針對铽螯合物標'記 之適當激發源。 表 3 : Philips LXK2-PR14-R00 LED 規格The excitation wavelength of the LED 26 is dependent on the choice of egg light dye. Philips LXK2-PR14-R00 is the appropriate source of excitation for Pulsar 650 dyes. SET UVT0P3 3 5T039BL LED is the appropriate excitation source for the ruthenium chelate. Table 3: Philips LXK2-PR14-R00 LED Specifications
參數 符號 値 ρα — 單兀 波長 λβχ 460 nm 發射頻率 Vem 6.52(10)14 Hz 輸出功率 Pi 0.515(min)@ ΙΑ W 發射模式 Lambertian數據圖 N/A 表 4 : SET UVTOP33 4T039BL LED 規格Parameter Symbol 値 ρα — Single 兀 Wavelength λβχ 460 nm Transmit frequency Vem 6.52(10)14 Hz Output power Pi 0.515(min)@ ΙΑ W Transmit mode Lambertian data graph N/A Table 4 : SET UVTOP33 4T039BL LED Specifications
參數 符號 値 單元 波長 λβ 340 nm 發射頻率 Ve 8.82(10)14 Hz 功率 Pi 0.000240(min)@ 20mA W 脈衝順向電流 I 200 mA 發射模式 Lambertian N/A 紫外激發光 矽吸收少量之紫外光。因此,使用紫外激發光是有利 的。可使用紫外光之LED激發源,但LED 26之寬光譜降 -231 - 201209402 低此方法之效果。爲解決此問題,可使用經過濾之紫外光 LED。隨意地,紫外線雷射可作爲激發源,除非該雷射相 對較高之花費對於特定的測試模組市場並不實用》 LED驅動器 LED驅動器29以固定電流驅動該LED 26所需之時間 。低功率USB2.0認證裝置可供電最高1單位負載(!〇〇毫 安培),最小操作電壓4.4伏特。標準功率調節電路係用於 此目的。 光電二極體 圖54顯示光電二極體184,其倂入LOC裝置301之 CMOS電路86。該光電二極體184係在沒有額外遮罩或步 驟下製成CMOS電路86之部分。此爲CMOS光電二極體 優於CCD之顯著優點,CCD是一種替代性感測技術,其 可使用非標準處理步驟被整合於相同晶片上或於鄰近晶片 上製造。晶片上檢測之花費低廉且縮小陣列系統之尺寸。 該較短之光學路徑長度降低來自週遭環境的雜訊以有效收 集螢光訊號,以及減少對於透鏡及濾鏡之傳統光學總成之 需求。 光電二極體184之量子效率係指衝撞其主動區185之 光子中被有效轉換成光電子之光子的分率。以標準矽處理 而言,可見光之量子效率係介於0.3至0.5之範圍,根據 處理參數諸如覆蓋層之量及吸收特性而定。 -232- 201209402 光電二極體184之檢測閥値決定可被檢測之螢光訊號 的最小強度。該檢測閥値亦決定該光電二極體1 84之尺寸 大小,因此亦決定在該雜交及檢測部52中之雜交室180 之數目(見圖52)。該等室之尺寸大小和數量係受限於該 LOC裝置之尺寸(以LOC裝置301爲例,其尺寸爲1760 微米X5 8 24微米)以及倂入其他功能性模組諸如病原體透析 部70及擴增部112之後可用空間之尺寸的技術參數。Parameter Symbol 单元 Element Wavelength λβ 340 nm Transmit frequency Ve 8.82(10)14 Hz Power Pi 0.000240(min)@ 20mA W Pulse forward current I 200 mA Emission mode Lambertian N/A UV excitation 矽 Absorbs a small amount of UV light. Therefore, it is advantageous to use ultraviolet excitation light. The LED excitation source can be used with ultraviolet light, but the wide spectral drop of LED 26 -231 - 201209402 is lower than this method. To solve this problem, a filtered UV LED can be used. Optionally, an ultraviolet laser can be used as an excitation source unless the relatively high cost of the laser is not practical for a particular test module market. LED Driver The time required for the LED driver 29 to drive the LED 26 at a fixed current. The low-power USB 2.0-certified unit can supply up to 1 unit load (! 〇〇 mA) with a minimum operating voltage of 4.4 volts. Standard power conditioning circuits are used for this purpose. Photodiode Figure 54 shows a photodiode 184 that breaks into the CMOS circuit 86 of the LOC device 301. The photodiode 184 is part of the CMOS circuit 86 without additional masking or steps. This is a significant advantage of CMOS photodiodes over CCDs, an alternative sensing technique that can be integrated on the same wafer or fabricated on adjacent wafers using non-standard processing steps. On-wafer inspection is inexpensive and reduces the size of the array system. This shorter optical path length reduces noise from the surrounding environment to effectively collect fluorescent signals and reduce the need for conventional optical assemblies for lenses and filters. The quantum efficiency of the photodiode 184 is the fraction of photons that are effectively converted into photoelectrons in the photons that collide with their active regions 185. In terms of standard enthalpy treatment, the quantum efficiency of visible light ranges from 0.3 to 0.5, depending on processing parameters such as the amount of cover layer and absorption characteristics. -232- 201209402 The detection valve of photodiode 184 determines the minimum intensity of the fluorescent signal that can be detected. The detection valve 値 also determines the size of the photodiode 184 and therefore the number of hybridization chambers 180 in the hybridization and detection section 52 (see Figure 52). The size and number of such chambers are limited by the size of the LOC device (in the case of the LOC device 301, which is 1760 microns X 5 8 24 microns) and into other functional modules such as the pathogen dialysis unit 70 and The technical parameters of the size of the available space after the addition 112.
以標準矽處理而言,該光電二極體184檢測最低5個 光子。然而,爲了確保可信賴之檢測,最小値可被設爲10 個光子。因此以0.3至0.5之量子效率範圍而言(如上所討 論),自該等探針之螢光發射最少應爲17個光子,但30 個光子將包含可靠檢測之適當誤差範圍。 校準室 光電二極體184之電學特性的不均一性、自動螢光和 φ 尙未完全衰減之剩餘激發光子通量將背景雜訊及偏移導入 輸出訊號。此背景係利用一或多種校準訊號自各輸出訊號 移除。校準訊號係藉由暴露一或多種在陣列中之校準光電 二極體1 84至個別校準源而產生。低校準源係用來測定其 中標靶尙未與探針反應之陰性結果。高校準源係來自探 針-標靶複合物之陽性結果的指徵。在此處所述之實施態 樣中’該低校準光源係由在雜交室陣列110中之校準室 382所提供,該校準室382: 不含任何探針; -233- 201209402 包含不具有螢光報導劑之探針;或 包含具有報導劑及淬熄劑的探針,該淬熄劑係經組態 以使永遠預期淬熄發生。 來自該校準室3 82之輸出訊號非常接近來自該LOC 裝置中之所有雜交室的輸出訊號中之雜訊和偏差。自其他 雜交室所產生之輸出訊號減去校準訊號實質上移除背景, 留下由該螢光發射(若有的話)所產生之訊號。自室陣列之 區域中的環境光線所產生之訊號亦被去除。 將理解的是,如上述參考圖1〇〇至103之陰性對照探 針可被用於校準室。然而,如圖94及95所示(其爲如圖 93所述之LOC變體X 728之DG和DH區的放大圖),另 —選項爲使該校準室382與該擴增子流體性隔離。該背景 雜訊和偏差可藉由保持該流體隔離室淨空,或藉由包含無 報導劑之探針或事實上具有報導劑與淬熄劑兩者之任何“ 標準”探針加以測定,因爲雜交被流體隔離所阻止。 該校準室382可提供高校準源以在對應之光電二極體 產生高訊號。該高訊號對應在室中已被雜交之所有探針。 點樣具有報導劑但無淬熄劑之探針,或僅具有報導劑之探 針將一致地提供近似於雜交室中大多數探針已被雜交之訊 號。亦將理解的是’校準室382可被用來取代對照探針, 或除了對照探針以外附加使用。 校準室382在雜交室陣列各處之數量和安排係隨意的 。然而,若光電二極體184係由相對較近之校準室382校 準,該校準將更爲準確。參考圖56,該雜交室陣列11〇針 -234- 201209402 對每八個雜交室180具有一個校準室382。也就是說,校 準室382係安置於每三乘三之雜交室180方塊的中間。在 此組態中,該等雜交室180係由緊鄰的校準室3 82校準。The photodiode 184 detects a minimum of 5 photons in terms of standard 矽 processing. However, to ensure reliable detection, the minimum chirp can be set to 10 photons. Thus, in the quantum efficiency range of 0.3 to 0.5 (as discussed above), the fluorescence emission from the probes should be a minimum of 17 photons, but 30 photons will contain an appropriate margin of error for reliable detection. Calibration Chamber The inhomogeneity of the electrical characteristics of the photodiode 184, autofluorescence, and residual excitation photon flux that is not fully attenuated by φ 导入 introduces background noise and offset into the output signal. This background is removed from each output signal using one or more calibration signals. The calibration signal is generated by exposing one or more of the calibrated photodiodes 184 in the array to individual calibration sources. The low calibration source is used to determine the negative result of the target 尙 not reacting with the probe. The high calibration source is indicative of a positive result from the probe-target complex. In the embodiment described herein, the low calibration source is provided by a calibration chamber 382 in the hybrid chamber array 110, the calibration chamber 382: does not contain any probes; -233-201209402 contains no fluorescence a probe for the reporter; or a probe having a reporter and a quencher configured to cause quenching to occur forever. The output signal from the calibration chamber 382 is very close to the noise and bias in the output signals from all of the hybrid chambers in the LOC device. The output signal generated by the other hybridization chamber minus the calibration signal substantially removes the background, leaving the signal generated by the fluorescent emission (if any). Signals generated by ambient light in the area of the chamber array are also removed. It will be appreciated that a negative control probe as described above with reference to Figures 1A through 103 can be used in the calibration chamber. However, as shown in Figures 94 and 95 (which is an enlarged view of the DG and DH regions of the LOC variant X 728 as described in Figure 93), another option is to fluidly isolate the calibration chamber 382 from the amplicons. . The background noise and bias can be determined by maintaining the fluid isolation chamber clearance or by using a probe containing no reporter or indeed any "standard" probe having both a reporter and a quencher, as hybridization Blocked by fluid isolation. The calibration chamber 382 can provide a high calibration source to produce a high signal at the corresponding photodiode. This high signal corresponds to all probes that have been hybridized in the chamber. Spotting a probe with a reporter but no quencher, or a probe with only a reporter will consistently provide a signal that approximates that most of the probes in the hybridization chamber have been hybridized. It will also be understood that the 'calibration chamber 382 can be used in place of or in addition to the control probe. The number and arrangement of calibration chambers 382 throughout the array of hybrid chambers is arbitrary. However, if the photodiode 184 is calibrated by a relatively close calibration chamber 382, the calibration will be more accurate. Referring to Figure 56, the hybridization chamber array 11 --234-201209402 has one calibration chamber 382 for every eight hybridization chambers 180. That is, the calibration chamber 382 is placed in the middle of each of the three-by-three hybrid chambers 180 squares. In this configuration, the hybridization chambers 180 are calibrated by the immediately adjacent calibration chamber 382.
圖99顯示差分成像儀電路78 8,該差分成像儀係用來 從該周圍之雜交室180的螢光訊號減去對應該校準室382 之光電二極體184因爲激發光而產生之訊號。該差分成像 儀電路788自像素790和“虛擬”像素792取樣訊號。在 —實施態樣中’該“虛擬”像素792係被遮住以防光照射 ,所以其輸出訊號提供暗參考。或者,該“虛擬”像素 792可與該陣列之其他部分一起暴露於激發光。在該“虛 擬”像素792係暴露於光之實施態樣中,由室陣列之區域 中的環境光線所產生之訊號亦被減除。來自像素790的訊 號非常微弱(即接近暗訊號),在沒有暗訊號位準之參考下 將難以分辨背景値與非常微弱之訊號。 在使用期間,該“讀取_列” 794和“讀取_列_(1” 795 係經啓動,且M4 797和MD4 80 1電晶體被開啓。開關 807和809被關閉以使來自該像素79〇及“虛擬”像素 792之輸出被分別儲存於像素電容器803及虛擬像素電容 器805。在該像素訊號被儲存後,停用開關807和809。 接著該“讀取-行”開關8 1 1和虛擬“讀取_行”開關8 1 3 被關閉’在輸出處之開關電容放大器815放大該示差訊號 8 17« 光電二極體之抑制及致能 -235- 201209402 該光電二極體184於LED 26激發期間必須被抑制且 於螢光期間必須被致能。圖69係單一光電二極體丨84之 電路圖,圖70爲光電二極體控制信號之時序圖。該電路 具有光電二極體184及六個MOS電晶體Mshunt 3 94、Mtx 396、Mreset 3 98、Msf 400、Mread 402 及 Mbias 404。於激 發循環tl開始時,藉由拉高Mshunt閘極3 84及重設閘極 3 8 8而開啓電晶體Mshunt 3 94及Mreset 3 98。於此期間,該 激發光子於光電二極體184中產生載波。這些載波必須被 移除,因爲該產生之載波量足以使該光電二極體184飽和 。於此循環期間,Mshunt 3 94直接移除光電二極體184中 產生之載波,而Mreset 398重設任何因爲電晶體洩漏或在 基板中因激發產生之載波擴散而聚積於節點‘NS’ 406之載 波。於激發後,俘獲循環始於t4»於此循環中,來自螢光 團之發射反應被俘獲並整合入節點‘NS’ 406上之電路。此 藉由拉高tx閘極3 86達成,此開啓電晶體M,x 396並將聚 積於光電二極體184上之任何載波轉移至節點‘NS’ 406。 俘獲循環之期間長度可和螢光團發射一樣長。來自雜交室 陣列110中之所有光電二極體184的輸出同時被俘獲。 在俘獲循環t5結束與讀取循環t6開始之間具有延遲 。此延遲是因爲需要在俘獲循環之後分開讀取雜交室陣列 110中之各個光電二極體184(見圖52)。第一個被讀取之 光電二極體184將具有最短的讀取循環前之延遲,而最後 一個光電二極體184將具有最長的讀取循環前之延遲。在 讀取循環期間,藉由拉高閱讀閘極393而開啓電晶體 -236- 201209402Figure 99 shows a differential imager circuit 78 8 for subtracting the signal from the fluorescent signal of the surrounding hybridization chamber 180 corresponding to the photodiode 184 of the calibration chamber 382 due to the excitation light. The differential imager circuit 788 samples the signal from the pixel 790 and the "virtual" pixel 792. In the embodiment - the "virtual" pixel 792 is shielded from light illumination, so its output signal provides a dark reference. Alternatively, the "virtual" pixel 792 can be exposed to the excitation light along with other portions of the array. In the embodiment in which the "virtual" pixel 792 is exposed to light, the signal generated by ambient light in the area of the array of cells is also subtracted. The signal from pixel 790 is very weak (i.e., close to the dark signal), and it will be difficult to distinguish between background and very weak signals without reference to the dark signal level. During use, the "read_column" 794 and "read_column_(1" 795 are activated, and the M4 797 and MD4 80 1 transistors are turned on. The switches 807 and 809 are turned off to enable the pixel from The outputs of the 79" and "virtual" pixels 792 are stored in pixel capacitor 803 and virtual pixel capacitor 805, respectively. After the pixel signal is stored, switches 807 and 809 are disabled. Next, the "read-line" switch 8 1 1 And the virtual "read_row" switch 8 1 3 is turned off 'the switched capacitor amplifier 815 at the output amplifies the differential signal 8 17 « suppression and enabling of the photodiode - 235 - 201209402 The photodiode 184 LED 26 must be suppressed during excitation and must be enabled during fluorescence. Figure 69 is a circuit diagram of a single photodiode 丨 84, and Figure 70 is a timing diagram of a photodiode control signal. The circuit has a photodiode 184 and six MOS transistors Mshunt 3 94, Mtx 396, Mreset 3 98, Msf 400, Mread 402 and Mbias 404. At the beginning of the excitation cycle t1, by pulling up the Mshunt gate 3 84 and resetting the gate 3 8 8 and turn on the crystal Mshunt 3 94 and Mreset 3 98. During this period, The excitation photons generate a carrier in the photodiode 184. These carriers must be removed because the amount of carrier generated is sufficient to saturate the photodiode 184. During this cycle, Mshunt 3 94 directly removes the photodiode The carrier generated in body 184, and Mreset 398 resets any carrier that accumulates at node 'NS' 406 due to transistor leakage or carrier diffusion due to excitation in the substrate. After excitation, the capture cycle begins at t4» During the cycle, the emission reaction from the fluorophore is captured and integrated into the circuit on the node 'NS' 406. This is achieved by pulling up the tx gate 3 86, which turns on the transistor M, x 396 and accumulates in the photodiode Any carrier on pole 184 is transferred to node 'NS' 406. The length of the capture cycle can be as long as the fluorophore emission. The output from all of the photodiodes 184 in hybrid array 110 is simultaneously captured. There is a delay between the end of cycle t5 and the beginning of read cycle t6. This delay is due to the need to separately read each photodiode 184 in hybrid cell array 110 after the capture cycle (see Figure 52). The photodiode 184 will have the shortest read cycle delay, and the last photodiode 184 will have the longest read cycle delay. During the read cycle, the read gate is pulled high. 393 and turn on the transistor -236- 201209402
Mread 402。該‘NS’節點406之電壓係利用源極隨耦電晶體 Msf 400加以緩衝及讀出。 以下討論其他啓動或抑制該光電二極體之可任選之方 法: 1. 抑制方法Mread 402. The voltage of the 'NS' node 406 is buffered and read using the source follower transistor Msf 400. Other optional methods for activating or suppressing the photodiode are discussed below: 1. Suppression method
圖96、97及98顯示Mshunt電晶體3 94之三種可能的 組態 77 8、780、7 82。該 Mshunt 電晶體 394 在最大 |FCS| = 5 V 時具有非常高的關閉比,其在激發期間被致能。如圖96 所示,該Mshunt閘極3 84係經組態於該光電二極體184之 邊緣。可任意選擇地,如圖97所示,該Mshunt閘極384 係經組態以環繞該光電二極體1 84。第三個選擇係將該 Mshunt閘極3 84組態於該光電二極體184之內,如圖98所 示。在第三種選擇下,光電二極體之主動區185將較小。 這三種構型778、780及782減少自該光電二極體184 中之所有位置到Mshunt閘極3 84之平均路徑長度。在圖96 中,該Mshunt閘極3 84係位於該光電二極體1 84之一側❶ 此組態係最容易製造,且最不會佔用光電二極體之主動區 1 85。然而,滯留於光電二極體1 84遠端側之任何載波需 要較長時間以通過Mshunt閘極3 84。 在圖97中,該Mshunt閘極W4環繞該光電二極體184 。此進一步減少光電二極體184中之載波到Mshunt閘極 3 84之平均路徑長度。然而,沿著光電二極體184之周圍 延伸之Mshunt閘極384造成光電二極體主動區185較大之 -237- 201209402 縮減。圖98中之組態782將Mshunt閘極3 84定位於主 區185中。此提供了至Mshunt閘極384的最短平均路徑 度,因此過渡時間最短。然而,對於主動區185之侵佔 大。其亦造成較寬之洩漏路徑。 2. 致能方法 a. 觸發光電二極體以固定延遲來驅動該分流電晶體。 b. 觸發光電二極體以可程控延遲來驅動該分流電晶體 c. 由LED驅動脈衝以固定延遲來驅動該分流電晶體。 d. 如2c般但以可程控延遲來驅動該分流電晶體。 圖75爲切過雜交室180之截面示意圖,顯示埋入 CMOS電路86中之光電二極體184及觸發光電二極體1 。以觸發光電二極體187取代光電二極體184之角落中 小面積。具有小面積之觸發光電二極體187即已足夠, 爲激發光之強度相較於螢光發射將爲高。該觸發光電二 體187係對激發光244敏感。該觸發光電二極體187暫 該激發光2 44已熄滅,並於短暫延遲Δί 300之後啓動該 電二極體184(見圖2)。此延遲允許該螢光光電二極體1 得以在沒有激發光244時檢測來自FRET探針186之螢 發射。此致能檢測及增進信號噪比。 光電二極體184及觸發光電二極體187兩者均位於 各雜交室180下之CMOS電路86中。光電二極體之陣 組合連同適當之電子組件形成光感應器44(見圖68)。該 電二極體184爲CMOS結構製造期間所製成之pn接面 動 長 最 於 87 的 因 極 存 光 84 光 於 列 光 -238- 201209402 不需要額外之遮罩或步驟。於MST製造期間,光電二極 體184之上的介電層(未顯示)係利用標準MST光蝕刻技術 而任意地薄化以允許更多螢光照射該光電二極體1 84之主 動區185。該光電二極體184具有視場,以使來自雜交室 180內之探針-標靶雜交體之螢光信號入射至感測器表面上 。該螢光被轉換成光電流,該光電流接著可利用CMOS電 路86測量。Figures 96, 97 and 98 show three possible configurations of Mshunt transistor 3 94 77 8, 780, 7 82. The Mshunt transistor 394 has a very high turn-off ratio at maximum |FCS| = 5 V, which is enabled during excitation. As shown in FIG. 96, the Mshunt gate 3 84 is configured at the edge of the photodiode 184. Optionally, as shown in FIG. 97, the Mshunt gate 384 is configured to surround the photodiode 184. The third option is to configure the Mshunt gate 3 84 within the photodiode 184, as shown in FIG. In the third option, the active region 185 of the photodiode will be smaller. These three configurations 778, 780, and 782 reduce the average path length from all locations in the photodiode 184 to the Mshunt gate 3 84. In Figure 96, the Mshunt Gate 3 84 is located on one side of the photodiode 1 84. This configuration is the easiest to fabricate and does not occupy the active region of the photodiode 1 85. However, any carrier remaining on the far-end side of the photodiode 1 84 takes a long time to pass through the Mshunt gate 3 84. In FIG. 97, the Mshunt gate W4 surrounds the photodiode 184. This further reduces the average path length of the carrier in the photodiode 184 to the Mshunt gate 3 84. However, the Mshunt gate 384 extending around the periphery of the photodiode 184 causes the larger photodiode active region 185 to be reduced from -237 to 201209402. Configuration 782 in Figure 98 positions Mshunt Gate 3 84 in main area 185. This provides the shortest average path to the Mshunt gate 384, so the transition time is the shortest. However, the encroachment of the active zone 185 is large. It also creates a wider leak path. 2. Enable method a. Trigger the photodiode to drive the shunt transistor with a fixed delay. b. Triggering the photodiode to drive the shunt transistor with a programmable delay c. The shunt transistor is driven by the LED drive pulse with a fixed delay. d. Drive the shunt transistor as a 2c but with a programmable delay. Figure 75 is a schematic cross-sectional view showing the cross-cutting cell 180 showing the photodiode 184 and the trigger photodiode 1 embedded in the CMOS circuit 86. The small area of the corner of the photodiode 184 is replaced by the trigger photodiode 187. Triggering photodiode 187 with a small area is sufficient, and the intensity of the excitation light will be higher than that of the fluorescent emission. The trigger photodiode 187 is sensitive to excitation light 244. The trigger photodiode 187 temporarily extinguishes the excitation light 2 44 and activates the electrical diode 184 after a short delay of Δί 300 (see Fig. 2). This delay allows the fluorescent photodiode 1 to detect the fire emission from the FRET probe 186 when there is no excitation light 244. This enables detection and enhancement of signal to noise ratio. Both photodiode 184 and trigger photodiode 187 are located in CMOS circuitry 86 under each hybrid cell 180. The combination of photodiodes is combined with appropriate electronic components to form a photosensor 44 (see Figure 68). The electric diode 184 is a pn junction made during the manufacture of the CMOS structure. The maximum length of the light is 84. The light is stored in the light - 238-201209402. No additional mask or step is required. During MST fabrication, the dielectric layer (not shown) over the photodiode 184 is arbitrarily thinned using standard MST photolithography techniques to allow more phosphor to illuminate the active region 185 of the photodiode 184. . The photodiode 184 has a field of view such that a fluorescent signal from the probe-target hybrid within the hybridization chamber 180 is incident on the surface of the sensor. The fluorescence is converted to a photocurrent which can then be measured using CMOS circuitry 86.
或者,一或多個雜交室180可僅配置觸發光電二極體 187。這些選擇可與上述之2a及2b組合使用。 螢光之延遲檢測 下述推導說明使用長壽命螢光團以供上述LED/螢光 團組合之螢光的延遲檢測。螢光強度係以固定強度Ie之理 想脈衝在時間Μ及h之間激發後,由時間函數推導而來 ,如圖6 0所示。 令[Sl](t)等於在時間t之激發態的強度,然後在激發 期間及激發之後,每單位體積每單位時間之激發態的數量 係由下面微分方程式描述_· d[Sl] dt (0 + _) τρAlternatively, one or more of the hybridization chambers 180 can be configured to only trigger the photodiode 187. These choices can be used in combination with 2a and 2b above. Fluorescence Delay Detection The following derivation illustrates the use of long-lived fluorophores for delayed detection of the above-described LED/fluorescent combination of fluorescence. The fluorescence intensity is derived from the time function by the ideal pulse of the fixed intensity Ie after excitation between time Μ and h, as shown in Fig. 60. Let [Sl](t) be equal to the intensity of the excited state at time t, then the number of excited states per unit volume per unit time during and after excitation is described by the following differential equation _· d[Sl] dt ( 0 + _) τρ
hve (1) 其中c爲螢光團之莫耳濃度,ε爲莫耳淬熄係數,ve爲激 發頻率,且h = 6.62606896(1 0)_34 JS爲普朗克常數。 此微分方程式具有一般式: -239- 201209402 ^- + p(x)y = g(x) αχ 其有解法: y(x) = jpWdx q(x)dx + k jpU)dx (2) 現在使用此來解答式(1)Hve (1) where c is the molar concentration of the fluorophore, ε is the molar quenching factor, ve is the excitation frequency, and h = 6.62606896(1 0)_34 JS is the Planck constant. This differential equation has the general formula: -239- 201209402 ^- + p(x)y = g(x) αχ There is a solution: y(x) = jpWdx q(x)dx + k jpU)dx (2) Now used This solution (1)
[叫W = ^_ + fe-"v…(3) hvM 於時間h時,[们]⑺)=〇,且自(3) (4)[called W = ^_ + fe-"v...(3) hvM at time h, [we](7))=〇, and from (3) (4)
,1e^T/ /ι; k =--e / …,1e^T/ /ι; k =--e / ...
hvB 將(4)代入(3): [s\m-hvB Substitutes (4) into (3): [s\m-
Iescrf Iescrf hve hveIescrf Iescrf hve hve
於時間t2時: 當 hvo κ …(5)該激發態呈指數衰減且以式(6)描述 -240- 201209402 [幻](〇 =[幻]Ο—(ί—…(6) 將(5)代入(6): [51](〇 = Ie£CTf [1 -]e—(,_,2)/r’ …(7 ) hyeAt time t2: when hvo κ ... (5) the excited state is exponentially decayed and described by equation (6) -240 - 201209402 [magic] (〇=[幻]Ο—(ί—...(6) will (5 Substitute (6): [51](〇= Ie£CTf [1 -]e—(,_,2)/r' ...(7 ) hye
該螢光強度係由下列等式得到: (8) //(0 = — αχ 其中ν/爲該螢光頻率,η爲量子產率,且1爲光學路徑長 度。 於是自(7):The fluorescence intensity is obtained by the following equation: (8) //(0 = - αχ where ν/ is the fluorescence frequency, η is the quantum yield, and 1 is the optical path length. Then from (7):
dt kVe ... (9) 將(9)代入(8):Dt kVe ... (9) Substituting (9) into (8):
If{t) = Ie£Clv^-[l-e~{,2'l')lTf ]e-(,-i2)/r/ ve …(1 0) 當^14 〇〇,々⑺-> /#/;/立,-,2)/r,If{t) = Ie£Clv^-[le~{,2'l')lTf ]e-(,-i2)/r/ ve ...(1 0) When ^14 〇〇,々(7)-> / #/;/立,-,2)/r,
Tf Ve 因此’我們可以寫出下列的近似式,此式描述該螢光 -241 - 201209402 強度在充分長的激發脈衝((2-h>>rf)之後衰減: 當 ikt2,1八〇 = 1細\”Tf Ve therefore 'we can write the following approximation, which describes the intensity of the fluorescence -241 - 201209402 after a sufficiently long excitation pulse ((2-h>>rf) decays: when ikt2,1 gossip = 1 fine\"
Ve …(1 1) 在上一節,我們針對的情況做總結, 當 tkt2,If(t) = Iescl7j丄e””。Ve ...(1 1) In the previous section, we summarized the situation, when tkt2, If(t) = Iescl7j丄e””.
Ve 從上述等式,我們可以導出下列式子: 心(,)=>ye£c/77e_(,w:)/r/ …(1 2) 其中 = ^爲每單位面積每單位時間之螢光光子數且 hvf 弋=·^-爲每單位面積每單位時間之激發光子數。 hye 因此, 00 nf{t) = \nf{t)dt- (13) h 其中&爲每單位面積之螢光光子數且ί3爲光電二極體開啓 的時間點。將(12)代入(13): 00Ve From the above equation, we can derive the following formula: heart (,) => y £ c / 77e_ (, w:) / r / ... (1 2) where = ^ is the fire per unit area per unit time The photon number and hvf 弋=·^- are the number of excitation photons per unit area per unit time. Hye Therefore, 00 nf{t) = \nf{t)dt- (13) h where & is the number of fluorescent photons per unit area and ί3 is the time point at which the photodiode is turned on. Substituting (12) into (13): 00
Hf=jyie€chje-(HWr/dt …(14) h -242- 201209402 目前,到達光電二極體每單位面積每單位時間之螢光 光子數^(0係由下式獲得: 属…(15)Hf=jyie€chje-(HWr/dt ...(14) h -242- 201209402 At present, the number of fluorescent photons per unit area per unit area of the photodiode is obtained ^(0 is obtained by the following formula: genus...(15 )
其中么爲光學系統之光收集效率。 將(12)代入(15)我們發現 氓_((_<2)/、··(16) 同樣地,到達光電二極體每單位螢光面積之螢光光子 數圮將如下述: 〇〇 且代入(16)並積分:Among them is the light collection efficiency of the optical system. Substituting (12) into (15) we find 氓_((_<2)/, (16) Similarly, the number of fluorescent photons per unit of fluorescent area reaching the photodiode will be as follows: And substitute (16) and integrate:
=φ0ηΐεοΙητ/ε'((ί~,ι),Τί 因此, η^φ^εοίητ^'^ · (17) t3的理想値係於當該光電二極體184內因爲螢光光子 所產生之電子率變成等於該光電二極體184內由激發光子 -243- 201209402 所產生之電子率時’因爲激發光子通量衰減比螢光光子通 量衰減快更多。 感測器每單位螢光面積因爲螢光而輸出之電子率爲: έ>(〇 = ^η;(〇 其中"爲該感測器在該螢光波長下之量子效率。=φ0ηΐεοΙητ/ε'((ί~,ι),Τί Therefore, η^φ^εοίητ^'^ · (17) The ideal 値 of t3 is the electron generated in the photodiode 184 due to the photon photons The rate becomes equal to the electron rate generated by the excitation photon -243-201209402 in the photodiode 184' because the excitation photon flux decays more rapidly than the fluorescence photon flux. The sensor per unit of fluorescent area is The electron ratio of the fluorescent output is: έ > (〇 = ^η; (〇 where " is the quantum efficiency of the sensor at the fluorescent wavelength.
代入(17)我們得到: = (卜’2)/r/ …(1 8 ) 同樣地,感測器每單位螢光面積因爲激發光子而輸出 之電子率爲: έ;(0 = ^>'("2)/Γ,- (19)Substituting (17) we get: = (b '2) / r / ... (1 8 ) Similarly, the electron rate per unit of fluorescent area of the sensor due to excitation of photons is: έ; (0 = ^>'("2)/Γ,- (19)
其中九爲該感測器在該激發波長下之量子效率,且%爲對 應該激發LED之『切斷』特性的時間常數。在時間t2之 後,LED之衰減光子通量將增加螢光訊號的強度且延長螢 光訊號之衰減時間,但我們假設此對If(t)之影響可被忽略 ,因此我們採取保守(conservative)的方法。 目前,如先前所提及,^的理想値係當:Nine of them are the quantum efficiencies of the sensor at the excitation wavelength, and % is the time constant corresponding to the "off" characteristic of the LED. After time t2, the attenuated photon flux of the LED will increase the intensity of the fluorescent signal and extend the decay time of the fluorescent signal, but we assume that the effect on If(t) can be ignored, so we take a conservative method. Currently, as mentioned earlier, the ideal system of ^ is:
-244- 201209402 因此,由(18)和(19)我們得到: 並且重整之後我們得到:-244- 201209402 Therefore, we get from (18) and (19): and after the reorganization we get:
\η{εοΙη^^~) h~h = —i~^——(20) -—一 丨.\η{εοΙη^^~) h~h = —i~^——(20) -—一丨.
Tf ^ 由上面兩段,我們得到下列兩個運算式: ' =iWr/e_Ai/r/…(2 1 ) △,=」「V-... (22)Tf ^ From the above two paragraphs, we get the following two expressions: ' =iWr/e_Ai/r/...(2 1 ) △,=”“V-... (22)
Tf Te 其中f = £c/;7且Δί = ί3-ί2。我們亦了解實際上/2_ii>>iV。 用於螢光檢測的理想時間及利用Philips LXK2-PR 14-ROO LED和Pulsar 650染料所檢測的螢光光子數如下述決 定。該理想檢測時間係使用式(2 2)決定: 回想擴增子的濃度’且假設所有擴增子皆雜交,則發 螢光的螢光團濃度爲:c = 2.89(l〇)-6mol/L。 室的高度爲光學路徑長度1 = 8( 10)·6 m。 -245- 201209402 已將螢光區域視爲等同於光電二極體區域,然而實際 的螢光區域實質上大於光電二極體區域;因此可大槪假設 么=〇.5爲光學系統之光採集效率。從光電二極體的特性來 說,^1 = 10係極爲保守之該光電二極體在該螢光波長下之 <Pe 量子效率對彼在該激發波長下之量子效率之比値。 以典型的LED衰減壽命& = 〇.5奈秒和使用Pulsar 65〇 規格,可決定心: F = [\ .48(10)6 ][2.89(10)-6 ][8(10)-6 ](1) = 3.42(10)-5 1η([3.42(1〇Γ5](10)(0.5)) Δ^= 1 Γ ια 0)-6 ~ 0.5(10)-9 = 4.34(10)-9 s 偵測到之光子數係使用式(2 1)決定。首先,每單位時 間發射之激發光子數目七係由檢驗照明幾何而決定。Tf Te where f = £c/;7 and Δί = ί3-ί2. We also know that in fact /2_ii>>iV. The ideal time for fluorescence detection and the number of fluorescent photons detected using Philips LXK2-PR 14-ROO LED and Pulsar 650 dye are as follows. The ideal detection time is determined using equation (2 2): recalling the concentration of the amplicon' and assuming that all amplicons are hybridized, the fluorescing fluorophore concentration is: c = 2.89 (l〇)-6 mol/ L. The height of the chamber is the optical path length 1 = 8 (10) · 6 m. -245- 201209402 The fluorescent region has been regarded as equivalent to the photodiode region, but the actual fluorescent region is substantially larger than the photodiode region; therefore, it can be assumed that the optical system is optically collected. effectiveness. From the characteristics of the photodiode, the ^1 = 10 series is extremely conservative. The ratio of the <Pe quantum efficiency of the photodiode at the fluorescence wavelength to the quantum efficiency at the excitation wavelength. With a typical LED decay life & = 〇.5 nanoseconds and using the Pulsar 65〇 specification, the heart can be determined: F = [\ .48(10)6 ][2.89(10)-6 ][8(10)- 6 ](1) = 3.42(10)-5 1η([3.42(1〇Γ5](10)(0.5)) Δ^= 1 Γ ια 0)-6 ~ 0.5(10)-9 = 4.34(10) The number of photons detected by -9 s is determined using equation (2 1). First, the number of excitation photons emitted per unit time is determined by examining the illumination geometry.
Philips LXK2 -PR 1 4-R00 LED 具有 Lambertian 發射模 式,因此: W/〇C_)…(2 3) 其中Η•,爲與LED的順向軸線方向之角度爲Θ之每單位立體 角每單位時間發射的光子數目,且&。爲Κ,在順向軸線方向 之値。 由該LED每單位時間所發射的光子之總數爲: -246- 201209402Philips LXK2 -PR 1 The 4-R00 LED has a Lambertian emission mode, so: W/〇C_)...(2 3) where Η•, the angle to the direction of the axis of the LED is 每 per unit solid angle per unit time The number of photons emitted, and &. For Κ, in the direction of the forward axis. The total number of photons emitted by the LED per unit time is: -246- 201209402
=J ril0 cos(0)dQ ω ..· (24) 現在,=J ril0 cos(0)dQ ω ..· (24) Now,
ΔΩ = 2<1 - cos(0+A0)] - 2;r[l - cos(0)] ΔΩ = 2^[cos(0) - cos(0 + Δ0)] 广Δ0、 = 4^sin(0)cos dCl = 2π siii(^)d Θ 將此代入(24): ΑΘ + 4^cos(0)sin2 ΑΘΎ. ή; = J 27fnl0 cos(e)sm(6)de 〇 = ^10 重新排列,我們得到:ΔΩ = 2<1 - cos(0+A0)] - 2;r[l - cos(0)] ΔΩ = 2^[cos(0) - cos(0 + Δ0)] Δ0, = 4^sin( 0)cos dCl = 2π siii(^)d Θ Substituting this into (24): ΑΘ + 4^cos(0)sin2 ΑΘΎ. ή; = J 27fnl0 cos(e)sm(6)de 〇= ^10 Rearrange ,we got:
·ή·丨。…(26) π LED的輸出功率爲0.515瓦且ve = 6.52(1 Ο)14赫茲,因 此:·ή·丨. ...(26) π LED output power is 0.515 watts and ve = 6.52 (1 Ο) 14 Hz, therefore:
Pi hve …(27) __0515_ ~ [6.63(10)-34][6.52(10)14] =1.19(10)18 光子 / 秒 將此値帶入(26)我們得到: -247- 201209402 …1.19(10)18 n,o=~ir~ = 3.79(10)17光子/秒/球面度 參照圖61,LED 26之光學中心252和透鏡254係示 意顯示。該光電二極體係16微米xl6微米’且對於在陣列 中間的光電二極體,自LED 26發射至光電二極體184的 光錐的立體角(Ω)係大約: Ω =感測器面積/r2 [16 (10)-6][16(10)-6] 2.825(10)-3]2 =3.21(10)_5球面度 將理解光電二極體陣列44之中央光電二極體184被 用於這些計算之用途。位於陣列邊緣的感測器在使用 L a m b e r t i a η激發源強度分佈之雜交事件時僅接收低於2 % 之光子。 每單位時間發射的激發光子數: he = η,Ω ... (28) =[3.79(10),7][3.21(10)"5] = 1.22(10)13 光子 / 秒 現在參考等式(29): -248 - 201209402 η!=Φ〇ΚΡτ^'Τ' ns = (0.5)[1.22(10)13][3.42(10)-5][l(10)^]e^34(,〇r9/1(10)'< = 208光子/感測器 因此,使用 Philips LXK2-PR14-R00 LED 和 Pulsar 65 0螢光團,我們可以輕易地檢測任何造成此等數目之光 子被發射的雜交事件。Pi hve ...(27) __0515_ ~ [6.63(10)-34][6.52(10)14] =1.19(10)18 photons/sec. Bring this 値 into (26) we get: -247- 201209402 ...1.19( 10) 18 n,o=~ir~ = 3.79(10)17 photons/sec/sphericity Referring to Fig. 61, the optical center 252 and lens 254 of the LED 26 are schematically shown. The photodiode system is 16 micrometers x 16 micrometers and for the photodiode in the middle of the array, the solid angle (Ω) of the light cone emitted from the LED 26 to the photodiode 184 is approximately: Ω = sensor area / R2 [16 (10)-6][16(10)-6] 2.825(10)-3]2 = 3.21(10)_5 Sphericality It will be understood that the central photodiode 184 of the photodiode array 44 is used. For the purposes of these calculations. Sensors located at the edge of the array receive only less than 2% of photons when using L a m b e r t i a η to excite the hybridization event of the source intensity distribution. Number of excitation photons emitted per unit time: he = η, Ω ... (28) = [3.79(10),7][3.21(10)"5] = 1.22(10)13 Photons/sec Reference now Equation (29): -248 - 201209402 η!=Φ〇ΚΡτ^'Τ' ns = (0.5)[1.22(10)13][3.42(10)-5][l(10)^]e^34( , 〇r9/1(10)'< = 208 Photon/Sensor So, with Philips LXK2-PR14-R00 LED and Pulsar 65 0 fluorophore, we can easily detect any photons that are emitted Hybrid event.
該SET LED照明幾何係顯示於圖62。當ID = 20毫安 培時,該LED具有最小光學功率輸出Pl = 240微瓦,波長 中心於λβ = 340奈米(铽螯合物之吸收波長)。以ID = 200毫 安培驅動該LED將線性增加輸出功率至Pl = 2.4毫瓦。藉 由將LED的光學中心252置於距離雜交室陣列11〇約 17.5毫米處,我們大約將此輸出通量集中於具有最大直徑 爲2毫米的圓點大小。The SET LED illumination geometry is shown in Figure 62. When ID = 20 mA, the LED has a minimum optical power output of Pl = 240 microwatts and a wavelength center at λβ = 340 nm (absorption wavelength of the ruthenium chelate). Driving the LED with ID = 200 mA will linearly increase the output power to Pl = 2.4 mW. By placing the optical center 252 of the LED about 17.5 mm from the array of hybridization chambers 11, we concentrated this output flux on a dot size having a maximum diameter of 2 mm.
在雜交陣列平面之2毫米直徑點中的光子通量由等式 2 7得到。 h =1l. 1 hve 2.4(10)-3 _ [6.63(1〇Γ34][8·82(10)14] = 4.10(10)15 光子 / 秒 使用等式2 8我們得到:The photon flux in the 2 mm diameter dots of the hybrid array plane is obtained from Equation 27. h =1l. 1 hve 2.4(10)-3 _ [6.63(1〇Γ34][8·82(10)14] = 4.10(10)15 photons/sec Using equation 2 8 we get:
= 4.10(10)15 [16(10)6]2 41(1〇)·3]2 -249- 201209402 = 3.34(10)11 光子 /秒 現在,回到等式22及使用先前列舉的Tb螯合物特性 ln[(6.94(l 0)-5)(10)(0·5)] Δ/= 1 1- 1(10)-3 ~ 0.5(10)-9 =3.98(10)_9 秒 現在自等式21 : n3 = (0.5)[3.34(10)n][6.94(10)-5][l(10)-3]e-398(10)',/1(,〇r5 = 11,600光子/感測器 由使用SET LED和铽螯合物系統之雜交事件所發射 之光子的理論數値係可簡單的檢測,且遠超過如上述之光 感應器可靠檢測所需之3 0個光子之低限値。 探針與光電二極體之間的最大間隔 在晶片上檢測雜交不需要以共軛焦顯微鏡(見先前技 術)進行檢測。此項與傳統檢測技術不同之處代表此系統 得以節省時間和成本上之重要因素。傳統檢測需要必須使 用透鏡和彎曲鏡面之成像光學。藉由採用非成像光學’該 診斷系統避免複雜及笨重的光學元件串之需求。將光電二 極體放置於非常靠近探針具有極高收集效率之優點:當在 該探針和光電二極體之間的材料厚度爲1微米級時’該發 -250-= 4.10(10)15 [16(10)6]2 41(1〇)·3]2 -249- 201209402 = 3.34(10)11 Photons/sec Now, return to Equation 22 and use the previously listed Tb chelate Compound property ln[(6.94(l 0)-5)(10)(0·5)] Δ/= 1 1- 1(10)-3 ~ 0.5(10)-9 =3.98(10)_9 seconds now Self-condition 21: n3 = (0.5)[3.34(10)n][6.94(10)-5][l(10)-3]e-398(10)', /1(,〇r5 = 11,600 photons The sensor is simple to detect by the theoretical number of photons emitted by the hybridization event using the SET LED and the ruthenium chelate system, and far exceeds the 30 photons required for reliable detection of the photosensor as described above. The lower limit between the probe and the photodiode The detection of hybridization on the wafer does not require detection with a conjugated focal microscope (see prior art). This difference from conventional detection techniques represents a savings in this system. An important factor in time and cost. Traditional inspection requires the use of lens and curved mirror imaging optics. By using non-imaging optics, the diagnostic system avoids the need for complex and cumbersome strings of optical components. Place the photodiode very Close to the probe for extremely high collection efficiency The advantage: when the material thickness between the probe and the photodiode is 1 micron 'the hair -250-
201209402 射光之收集角係高達173。。此角度藉由考慮自最靠近 電二極體之雜交室表面中心的探針發射的光來計算, 電二極體具有平行於該室表面的平面主動表面區。在 射角錐內之光可被光電二極體吸收,該發射角錐係定 在其頂點和在其平面之周圍上的感測器角落具有發射 。以1 6微米X 1 6微米之感測器爲例,此角錐之頂角爲 ;在該光電二極體經擴展使得其面積符合該29役 19.75微米之雜交室面積的限制例中,該頂角爲173。 該室表面和光電二極體主動表面之間的間隔爲1微米 小是容易達成的。 應用非成像光學方法確實需要該光電二極體184 靠近雜交室以收集足量之螢光發射光子。該光電二極 探針之間的最大間隔係如下述參照圖54決定。 利用铽螯合物螢光團和 SET UVT0P 3 3 5T039BL ,我們算出1 1 600個光子自個別雜交室180到達16拐 16微米之光電二極體184。在實施此計算時,我們假 雜交室180之光收集區域具有與該光電二極體主動區 相同之底面積,且雜交光子之總數的一半到達該光電 體184»也就是說,該光學系統之光收集效率爲九=0.5 更精確的說,我們可以寫出九=[(雜交室之光收集 的底面積)/(光電二極體面積)][Ω/4 7:],其中Ω =在雜 之基底上的代表點之光電二極體所對向之立體角。以 方錐之幾何而言: Q = 4arcsin(a2/(4d〇2 + a2)),其中 d〇 =該室與光電二極體 該光 該光 光發 義爲 探針 170。 ΐί米X 。在 或更 非常 體和 LED 交米X 設該 185 二極 〇 區域 交室 正四 之間 -251 - 201209402 的距離,且a爲該光電二極體之尺寸》 各雜交室釋放232 00個光子。該經選擇之光電 具有1 7個光子之檢測低限値,因此該所需之最小 率爲: 么=17/23200=7.33x10 該雜交室180之光收集區域的底面積爲29 1 9.75微米。 解出dQ,將得到在該雜交室與光電二極體184 最大限制距離爲d〇 = 249微米。在此限制下,如上 之收集錐角僅爲0.8°。應注意的是此分析忽略折射 之影響。 具有透析裝置、LOC及相連上蓋之微流體裝置的測 用於分析含有標的分子之樣品流體的測試模組 顯示於圖1 09。該測試模組1 1包含具有用於接受該 體之容器24的外殻13、在使用前覆蓋該容器24之 之無菌密封膠帶22、具有膜防護件410之膜密封件 成部份外殼1 3以減少該測試模組內之濕度降低同 氣壓變動時由該膜防護件410提供釋壓作用以防止 封件408損害、印刷電路板(PCB)57、微流體裝置 多孔元件49、標準微型USB接頭14以用於供電、 控制、外部電源供應電容器3 2及電感器1 5。 二極體 光學效 微米X 之間的 所定義 可忽略 試模組 "係 樣品流 可移除 408形 時在小 該膜密 7 83 > 資料及 -252- 201209402 該微流體裝置783具有與該容器24流體相通且經組 構以分離該標的分子與該樣品之其他組分之透析裝置7 8 4 、用於分析該標的分子之LOC裝置785,及覆蓋該LOC 裝置785及該透析裝置784以用於建立該LOC裝置785 與該透析裝置784之間的流體相通之上蓋5 1。 試劑裝載及探針點樣系統201209402 The collection angle of the light is as high as 173. . This angle is calculated by considering the light emitted from the probe closest to the center of the surface of the hybridization chamber of the electric diode, the electric diode having a planar active surface area parallel to the surface of the chamber. Light within the pyramid can be absorbed by the photodiode, which has an emission at its apex and at the sensor corners around its plane. Taking a 16 micron X 16 micron sensor as an example, the apex angle of the pyramid is; in the case where the photodiode is expanded such that its area conforms to the 29th. The angle is 173. The spacing between the surface of the chamber and the active surface of the photodiode is as small as 1 micron, which is easily achieved. The application of non-imaging optical methods does require that the photodiode 184 be placed close to the hybridization chamber to collect a sufficient amount of fluorescent emission photons. The maximum spacing between the photodiode probes is determined as described below with reference to Fig. 54. Using the ruthenium chelate fluorophore and SET UVT0P 3 3 5T039BL, we calculated that 1,600 photons were from individual hybridization chambers 180 to 16 turns of 16 micron photodiodes 184. In carrying out this calculation, the light collection region of our pseudo hybrid chamber 180 has the same bottom area as the active region of the photodiode, and half of the total number of hybrid photons reaches the photovoltaic body 184»that is, the optical system The light collection efficiency is nine = 0.5. More precisely, we can write nine = [(the bottom area of the light collection in the hybrid chamber) / (photodiode area)] [Ω / 4 7:], where Ω = The solid angle of the photodiode of the representative point on the hybrid substrate. In terms of the geometry of the square cone: Q = 4arcsin(a2/(4d〇2 + a2)), where d〇 = the chamber and the photodiode. The light is defined as probe 170. Ϊ́ί米 X. In the more or more body and LED intersection meter X set the distance between the 185 two-pole area intersection room -251 - 201209402, and a is the size of the photodiode. Each hybrid chamber releases 232 00 photons. The selected optoelectronics has a detection low limit of 17 photons, so the minimum required: ? = 17/23200 = 7.33 x 10 The bottom area of the light collection region of the hybridization chamber 180 is 29 1 9.75 microns. Solving dQ will result in a maximum limiting distance between the hybridization chamber and the photodiode 184 of d 〇 = 249 μm. Under this limitation, the collecting cone angle as above is only 0.8°. It should be noted that this analysis ignores the effects of refraction. Test module for dialysis device, LOC, and microfluidic device with attached caps The test module for analyzing sample fluids containing the target molecules is shown in Figure 109. The test module 1 1 includes a housing 13 having a container 24 for receiving the body, a sterile sealing tape 22 covering the container 24 before use, and a membrane seal having a membrane guard 410 as a partial housing 13 To reduce the humidity in the test module and provide pressure relief by the membrane guard 410 to prevent damage to the seal 408, the printed circuit board (PCB) 57, the microfluidic device porous member 49, and the standard micro USB connector. 14 for power supply, control, external power supply capacitor 3 2 and inductor 15. The defined negligible test module between the diode optical effect micrometer X" is a sample stream that can be removed at 408 when the film is dense 7 83 > data and -252-201209402 the microfluidic device 783 has The container 24 is in fluid communication and is configured to separate the target molecule from the other components of the sample, the dialysis device 784, the LOC device 785 for analyzing the target molecule, and the LOC device 785 and the dialysis device 784. The upper cover 51 is used to establish fluid communication between the LOC device 785 and the dialysis device 784. Reagent loading and probe spotting system
試劑貯器54、56、58、60及62(見圖6)係經如圖63 至66所示之機器人液滴射出系統塡充試劑及水。該機器 人系統亦點樣該寡核苷酸FRET探針186或ECL探針237 至該雜交室180之中。液滴分配技術是一種不貴之點樣技 術,該技術遞送可再現體積之小型液滴且許多不同溶液之 液滴可被同時分配。此允許該LOC裝置以極度高產量及 低成本的大量生產。 該試劑及探針點樣系統包括三種機器人子系統: 1.試劑分配機器人256(見圖63) -各具有液滴分配器 262之微量瓶258(見圖64)分配試劑至該貯器54、56、58 ' 60及62及分配水至該貯水器188(見圖6)。該機器人接 著施放該圖案上密封層82(若需要)至該上蓋46。 2.0NEC再塡充機器人274(見圖65)-具有液滴分配器 262之微量瓶25 8分配探針至該寡核苷酸射出器晶片 (ONEC)272之貯器278(見圖71及72)。該ONEC貯器278 饋料至熱液滴產生器271之陣列。該ONEC接著被用於該 第三機器人子系統,即LOC點樣機器人。 -253- 201209402 3.LOC點樣機器人289(以圖66示意說明)-ONEC 272 利用熱液滴產生器271點樣探針至該LOC裝置30之各雜 交室180(見圖72)。 微量瓶 該試劑分配機器人2 56及該ON EC再塡充機器人274 皆使用如圖64所示之微量瓶2 5 8。探針及試劑係從大瓶中 之供應器直接預定(未顯示)。液體從該大瓶中被微量吸取 至各該微量瓶25 8上之容器25 9以形成小等分(通常介於 28 2微升至4 00微升),該等分可與微量瓶一起冷藏直到需 要時。各微量瓶2W具有壓電液滴分配器262及附屬之品 質保證晶片(即積體電路)266,該晶片具有快閃記憶體及用 於電力及資料傳送之電接觸件2 64。該液滴分配器26 2具 有經組構以射出體積介於5 0皮升至1 5 0皮升之液滴的壓 電致動器26 1,以用於合理快速地試劑裝載同時維持正確 之液滴位置。 探針及試劑識別系統 該品質保證晶片266(見圖64)具有用於儲存、識別及 追蹤規格資料之數位記憶體,該規格資料特徵化在該微量 瓶2 5 8內之試劑或寡核苷酸探針溶液。在該點樣及裝載過 程結束時,來自各微量瓶2·5 8之資料以及其他裝載及點樣 資料經由控制該試劑分配機器人或探針分配機器人之控制 微處理器263被下載及儲存至該LOC裝置30之程式及資 -254- 201209402 料快閃記憶體40。此資料係用於診斷資訊及處理任務、品 質控制及審核。 參照圖73,ONEC 272亦具有數位記憶體諸如在 ONEC CMOS結構2 8 5中之快閃記憶體281以儲存寡核苷 酸規格資料諸如探針識別資料、批號等。和該LOC裝置 —樣,該ONEC再塡充機器人274自該微量瓶258上之品 質保證晶片266下載該規格資料至該ONEC快閃記憶體Reagent reservoirs 54, 56, 58, 60, and 62 (see Figure 6) are filled with reagents and water via a robotic droplet ejection system as shown in Figures 63-66. The robotic system also spots the oligonucleotide FRET probe 186 or ECL probe 237 into the hybridization chamber 180. Droplet dispensing technology is an inexpensive spotting technique that delivers small volumes of reproducible volume and droplets of many different solutions can be dispensed simultaneously. This allows the LOC device to be mass produced with extremely high throughput and low cost. The reagent and probe spotting system includes three robotic subsystems: 1. Reagent dispensing robot 256 (see Figure 63) - each vial 258 (see Figure 64) having a droplet dispenser 262 dispenses reagents to the reservoir 54, 56, 58 '60 and 62 and distribute water to the reservoir 188 (see Figure 6). The robot then applies the patterned upper sealing layer 82 (if desired) to the upper cover 46. The 2.0 NEC refill robot 274 (see Figure 65) - a micro vial 25 8 with a drop dispenser 262 dispenses a probe to the reservoir 278 of the oligonucleotide emitter wafer (ONEC) 272 (see Figures 71 and 72). ). The ONEC receptacle 278 is fed to an array of thermal droplet generators 271. The ONEC is then used for the third robotic subsystem, the LOC spotting robot. - 253 - 201209402 3. LOC Staking Robot 289 (illustrated schematically in Figure 66) - ONEC 272 uses thermal droplet generator 271 to spot probes to each of the hybrid chambers 180 of the LOC device 30 (see Figure 72). Micro vial The reagent dispensing robot 2 56 and the ON EC refilling robot 274 both use a micro vial 2 5 8 as shown in FIG. Probes and reagents are ordered directly from the supplier in the large bottle (not shown). The liquid is drawn from the large vial to a container 25 9 on each of the micro vials 25 8 to form a small aliquot (typically between 28 2 microliters and 400 microliters), which can be refrigerated with the micro vials until When needed. Each micro vial 2W has a piezoelectric droplet dispenser 262 and an associated quality assurance wafer (i.e., integrated circuit) 266 having flash memory and electrical contacts 2 64 for power and data transfer. The droplet dispenser 26 2 has a piezoelectric actuator 26 1 configured to emit droplets having a volume between 50 picoliters and 150 microliters for a reasonably fast reagent loading while maintaining correct Droplet position. Probe and Reagent Identification System The quality assurance wafer 266 (see Figure 64) has a digital memory for storing, identifying, and tracking specification data that characterizes reagents or oligonucleosides in the microbottle 258. Acid probe solution. At the end of the spotting and loading process, the data from each of the micro vials 2·5 8 and other loading and spotting data are downloaded and stored to the control microprocessor 263 which controls the reagent dispensing robot or probe dispensing robot. The program of the LOC device 30 and the resource - 254 - 201209402 flash memory 40. This information is used for diagnostic information and processing tasks, quality control and auditing. Referring to Fig. 73, ONEC 272 also has a digital memory such as flash memory 281 in ONEC CMOS structure 285 to store oligonucleotide specification data such as probe identification data, lot number, and the like. As with the LOC device, the ONEC refill robot 274 downloads the specification material from the quality assurance wafer 266 on the micro vial 258 to the ONEC flash memory.
自動化資訊傳遞極小化錯誤發生之可能性,若使用錯 誤之微量瓶,該測試模組閱讀器1 2或其他系統組件在處 理該診斷資訊時會識別此錯誤。 試劑分配機器人 該試劑分配機器人256之簡化上視圖及側視圖係如圖 63及108所示。其包括:Automated information transfer minimizes the possibility of errors that can be identified by the test module reader 12 or other system components when processing the diagnostic information if the wrong micro vial is used. Reagent Dispensing Robot The simplified top view and side view of the reagent dispensing robot 256 are shown in Figures 63 and 108. It includes:
•微量瓶25 8,其含有試劑及分子生物級水(僅顯示部 分微量瓶) •機械/電氣架286(僅顯示輪廓),其固定住微量瓶 258並提供電連接至微量瓶258 • XY平台268,其提供表面以用於可拆卸地安裝部 分深度切割之矽晶圓260或其他固定陣列諸如可分離之 PCB晶圓720 •配準相機270,其提供反饋給該控制微處理器263 以定位該壓電液滴分配器262之確切位置 -255- 201209402 在該微量瓶2 5 8上之壓電液滴分配器262係用於直接 分別分配該試劑及水至該LOC裝置貯器54、56、58、60 及62及該增濕器貯水器188。 ONEC再塡充機器人 該ONEC再塡充機器人274係顯示於圖65。其類似該 試劑分配機器人256,包括:• Micro vials 25 8 containing reagents and molecular bio-grade water (only partial micro-bottles are displayed) • Mechanical/electrical racks 286 (only outlines shown), which hold the micro vials 258 and provide electrical connection to the micro vials 258 • XY platform 268, which provides a surface for detachably mounting a portion of the deep cut wafer 260 or other fixed array such as a detachable PCB wafer 720. • A registration camera 270 that provides feedback to the control microprocessor 263 for positioning The exact position of the piezoelectric droplet dispenser 262 - 255 - 201209402 The piezoelectric droplet dispenser 262 on the micro vial 258 is used to directly dispense the reagent and water to the LOC device reservoir 54, 56, respectively. , 58, 60 and 62 and the humidifier reservoir 188. ONEC Refill Robot The ONEC Refill Robot 274 is shown in Figure 65. It is similar to the reagent dispensing robot 256 and includes:
• 1080個微量瓶258,其含有寡核苷酸探針之溶液( 僅供說明,未顯示所有微量瓶) •機械/電氣架286(僅顯示輪廓)-其固定住微量瓶258 並提供電連接至微量瓶258 •寡核苷酸射出器晶片(〇NEC)272-共1 080個ONEC 貯器27 8供應各自的射出器2 8 7,該射出器2 8 7各具有四 個ONEC熱液滴產生器271(見圖71及72)• 1080 micro-bottles 258 containing solutions of oligonucleotide probes (for illustration only, not all micro-bottles) • Mechanical/electrical rack 286 (profile only) - it holds the micro-bottle 258 and provides electrical connection To micro vial 258 • Oligonucleotide emitter wafer (〇NEC) 272 - a total of 1 080 ONEC reservoirs 27 8 supply respective emitters 2 8 7 , each of which has four ONEC thermal droplets Generator 271 (see Figures 71 and 72)
• XY平台268 :固定該寡核苷酸射出器晶片(ONEC) 2 72 •配準相機270,其提供反饋給該控制微處理器263 以定位該熱液滴產生器2 7 1之確切位置 該ONEC 2 72係在該機械/電氣架2 8 6下移動。獨特之 探針溶液係自各微量瓶25 8分配至各ONEC貯器27 8。該 ONEC 2 72接著被用於該探針點樣機器人273以用單一液 滴之探針溶液點樣該LOC裝置雜交室180。• XY stage 268: immobilizing the oligonucleotide emitter wafer (ONEC) 2 72 • registration camera 270 that provides feedback to the control microprocessor 263 to locate the exact location of the thermal droplet generator 2 7 1 The ONEC 2 72 is moved under the mechanical/electrical frame 286. A unique probe solution is dispensed from each vial 258 to each of the ONEC reservoirs 278. The ONEC 2 72 is then used in the probe spotting robot 273 to spot the LOC device hybridization chamber 180 with a single drop of probe solution.
ONECONEC
圖71 ' 72及73顯示該ONEC 2 72之細節。該ONEC -256- 201209402Figure 71 '72 and 73 show the details of the ONEC 2 72. The ONEC -256 - 201209402
2 72係用於無接觸地點樣探針至表面上(諸如在任何該L〇c 裝置中之雜交室陣列)之寡核苷酸點樣裝置。其整體尺寸 爲23,296微米xi,760微米,係利用發展成熟之高量光蝕 刻製造技術製造。各ONEC具有1 080個蝕刻在單片矽基 板2 75之貯器側2 77的貯器278 (見圖73)。由於具有超過 1〇〇〇個貯器278,各ONEC具有點樣該此處所述之LOC 裝置所需之完整探針系列。此允許各LOC之點樣過程得 以成爲單一步驟,因爲不需要使用超過一個ONEC以點樣 經組構以用於每種特定分析之LOC。該ONEC貯器278具 有長方形底(96微米χ208微米),深度爲2 00微米。各 ONEC貯器27 8饋入探針懸浮液至各自的射出器28 7。該 探針之液體懸浮液經由一對室入口 284塡充共同室282(見 圖72)。該室入口 2 84係二個自該貯器27 8至該共同室 282之直徑21微米之洞。四個熱液滴產生器271之一者藉 由加熱該致動器28 0以產生蒸氣泡,以經由在該射出器側 279之噴嘴2 8 3射出探針液滴至該雜交室180。四個熱液 滴產生器271允許備援,以防液滴產生器故障。 LOC探針點樣機器人 該LOC探針點樣機器人289係如圖66及92所示。 爲了清楚起見,在該PCB晶圓720上不是該LOC裝置30 之組件未被顯示。其包括下列: • ONEC 2 72-具有1080個貯器278之寡核苷酸射出器 晶片,各貯器裝有探針溶液(見圖71及72) -257- 201209402 • XY平台268:固定該部分深度切割之矽LOC晶圓 260(見圖66)或者該可分離之PCB晶圓720(見圖92) •配準相機270,其提供反饋給該控制處理器263以 定位該ONEC熱液滴產生器271之確切位置 該LOC矽晶圓260或該可分離之PCB晶圓720係可 拆卸地安裝在可沿著兩個正交軸移動之平台上。該ONEC 272係可拆卸地由夾具265固定,該夾具265係緊鄰該平 台’該射出器287面向該平台(見圖66)。該LOC矽晶圓 260或該可分離之PCB晶圓720係由該控制處理器26 3相 對該ONEC 272移動。各LOC裝置雜交室180係由該射出 器在該控制處理器263之操作控制下點樣。使用小於1 〇〇 皮升之體積減少反應時間且使該雜交室陣列之密度得以增 加。點樣低體積之探針液滴先前不曾被採用過,因爲要精 準且可靠地射出非常小的液滴具有困難度。被錯誤引導之 液滴無法點樣至正確之室,且可能汙染鄰近之室。 該ONEC 2 72可經驅動以產生一系列之液滴體積。爲 了正確分配,該由ONEC 272所產生之液滴將小於100皮 升。爲了改善該經分配之探針及試劑之正確性(就體積及 在該LOC裝置上之位置而言),由該ONEC所產生之液滴 可被縮小至小於25皮升,且較佳地小於6皮升。該ONEC 272以液滴形式分配探針溶液至該1080個雜交室180,該 液滴之體積介於〇_1皮升至1.6皮升且具有高度位置正確 性。 該雜交室陣列〗1 〇係經組構爲24行,每行具有45個 -258- 2012094022 72 is an oligonucleotide spotting device for contactless spot-like probes onto a surface, such as an array of hybridization chambers in any of the L〇c devices. Its overall size is 23,296 micrometers xi, 760 micrometers, and is manufactured using sophisticated, high-quality photo-etching manufacturing techniques. Each ONEC has 1,080 reservoirs 278 etched on the reservoir side 2 77 of the monolithic substrate 2 75 (see Figure 73). With more than one reservoir 278, each ONEC has a complete series of probes required to spot the LOC device described herein. This allows the LOC spotting process to be a single step because there is no need to use more than one ONEC to spot the LOC for each particular analysis. The ONEC receptacle 278 has a rectangular base (96 microns χ 208 microns) and a depth of 200 microns. Each ONEC receptacle 27 8 feeds the probe suspension to a respective injector 28 7 . The liquid suspension of the probe fills the common chamber 282 via a pair of chamber inlets 284 (see Figure 72). The chamber inlet 2 84 is a two-micron diameter hole from the reservoir 27 8 to the common chamber 282. One of the four thermal droplet generators 271 generates a vapor bubble by heating the actuator 28 to eject probe droplets to the hybrid chamber 180 via a nozzle 283 at the emitter side 279. Four hot drop generators 271 allow for backup to prevent the drop generator from malfunctioning. LOC Probe Staking Robot The LOC Probe Staking Robot 289 is shown in Figures 66 and 92. For the sake of clarity, components that are not on the PCB wafer 720 that are not the LOC device 30 are not shown. It includes the following: • ONEC 2 72 - an oligonucleotide emitter wafer with 1080 reservoirs 278, each reservoir containing a probe solution (see Figures 71 and 72) -257- 201209402 • XY Stage 268: Fixed A partially deep cut LOC wafer 260 (see FIG. 66) or the detachable PCB wafer 720 (see FIG. 92) • a registration camera 270 that provides feedback to the control processor 263 to locate the ONEC thermal droplet The exact location of the generator 271 The LOC wafer 260 or the detachable PCB wafer 720 is detachably mounted on a platform that is movable along two orthogonal axes. The ONEC 272 is removably secured by a clamp 265 that is in close proximity to the platform 'the injector 287 faces the platform (see Figure 66). The LOC wafer 260 or the detachable PCB wafer 720 is moved by the control processor 26 3 to the ONEC 272. Each LOC device hybridization chamber 180 is spotted by the injector under the operational control of the control processor 263. Using a volume of less than 1 皮 picoliter reduces the reaction time and increases the density of the array of hybrid chambers. Spotted low volume probe droplets have not been previously used, as it is difficult to accurately and reliably eject very small droplets. Drops that are misdirected cannot be spotted into the correct room and may contaminate adjacent chambers. TheONEC 2 72 can be driven to produce a series of droplet volumes. For proper dispensing, the droplets produced by the ONEC 272 will be less than 100 picolitres. To improve the correctness of the dispensed probe and reagent (in terms of volume and position on the LOC device), droplets produced by the ONEC can be reduced to less than 25 picoliters, and preferably less than 6 pics. The ONEC 272 dispenses the probe solution in droplet form to the 1080 hybridization chambers 180, the volume of which varies from 〇_1 skin to 1.6 picoliters and is highly positionally correct. The hybrid chamber array 11 〇 system is organized into 24 rows, each row has 45 -258- 201209402
相鄰之室(見圖52)。該樣品流路176通過每二行之間以使 得整體陣列具有實質上正方之形狀,以供該LED 26大約 —致地照射。由於該雜交室陣列1 1 〇係侷限於小於1 5 0 0 微米乘1 500微米之面積,因此該ONEC 272之點樣正確 性必須非常高。配準相機2 7 0係由該控制處理器2 6 3使用 以決定該ONEC熱液滴產生器271之確實位置,且該液滴 產生器之驅動脈衝係經由該ONEC銲墊276以與該XY平 台268同步化。 該使用ONEC 272及相機270之LOC探針點樣機器人 273可輕易地以每秒高於100個探針之速率點樣探針至表 面上(諸如該雜交室陣列11〇);在大部分情況之速率高於 每秒1,400個探針。通常,該液滴產生器之陣列以每秒高 於20,000個探針之速率點樣該探針至該表面上,且在許 多情況中,該液滴產生器之陣列以介於每秒3 00,000個探 針至每秒1,〇〇〇,〇〇〇個探針之速率點樣該探針至該表面上 該在矽基板上微影建造之液滴產生器陣列允許該 ONEC 272以遠高於現有探針點樣器之點樣密度點樣寡核 苷酸至表面上。ONEC 272輕易地以每平方毫米超過1個 探針之密度點樣。在絕大部分之情況中,該點樣密度係超 過每平方毫米8個探針。在大部分情況中,該點樣密度係 超過每平方毫米60個探針,且通常該密度係介於每平方 毫米5 00個探針至每平方毫米1,500個探針。 該使用ONEC 272作爲生化沉積裝置之LOC探針點樣 -259- 201209402 機器人273可輕易地以每秒高於loo個液滴之速率沉積生 化物質至表面上’在大部分情況之速率高於每秒1,4 〇〇個 液滴。通常,該液滴產生器之陣列以每秒高於20,〇〇〇個 液滴之速率點樣該液滴至該表面上,且在許多情況中,該 液滴產生器之陣列以介於每秒300,000個液滴至每秒 1,000,000個液滴之速率點樣該液滴至該表面上。 該使用ONEC 272作爲生化沉積裝置之LOC探針點樣 機器人273可輕易地以每平方毫米超過1個液滴之密度沉 積生化物質至表面上。在絕大部分之情況中,該點樣密度 係超過每平方毫米8個液滴。在大部分情況中,該點樣密 度係超過每平方毫米60個液滴,且通常該密度係介於每 平方毫米500個液滴至每平方毫米1,500個液滴。 結論 本文所述之裝置、系統及方法促進快速便宜及適合就 地醫護之分子診斷試驗。上述之系統及其成分僅爲說明用 途,且在不背離本發明的精神及廣義發明槪念的範圍下, 此領域中之熟知技藝者將輕易地了解許多變化及修飾。 【圖式簡單說明】 本發明之較佳實施態樣現將參照隨附之圖式僅作爲示 範說明,其中: 圖1顯示經組構以用於螢光偵測之測試模組及測試模 組閱讀器; -260- 201209402 圖2係經組構以用於螢光偵測之測試模組中之電子組 件之圖式槪要; 圖3係測試模組閱讀器中之電子組件之圖式槪要; 圖4係LOC裝置之結構之代表圖式; 圖5係LOC裝置之透視圖; 圖6係LOC裝置之平面圖,所有層之特徵及結構彼 此交疊顯示;Adjacent rooms (see Figure 52). The sample flow path 176 passes between every two rows such that the overall array has a substantially square shape for the LED 26 to illuminate approximately. Since the hybrid array 1 1 is limited to an area of less than 1 500 μm by 1500 μm, the correctness of the ONEC 272 must be very high. The registration camera 270 is used by the control processor 263 to determine the exact position of the ONEC thermal droplet generator 271, and the drive pulse of the droplet generator is via the ONEC pad 276 to the XY Platform 268 is synchronized. The LOC probe spotting robot 273 using the ONEC 272 and camera 270 can easily spot the probe onto the surface at a rate of more than 100 probes per second (such as the hybrid chamber array 11); in most cases The rate is higher than 1,400 probes per second. Typically, the array of droplet generators spot the probe onto the surface at a rate of more than 20,000 probes per second, and in many cases, the array of droplet generators is at 30,000,000 per second. Spotting the probe to a rate of 1, 〇〇〇, 探针 probes per second. The probe onto the surface. The droplet generator array constructed on the ruthenium substrate allows the ONEC 272 to be much higher. The spotting density of the existing probe spotter spots the oligonucleotide to the surface. ONEC 272 easily spotted at a density of more than one probe per square millimeter. In the vast majority of cases, the spot density is more than 8 probes per square millimeter. In most cases, the spot density is more than 60 probes per square millimeter, and typically the density is between 50,000 probes per square millimeter and 1,500 probes per square millimeter. The LOC probe spotting using the ONEC 272 as a biochemical deposition device - 259 - 201209402 The robot 273 can easily deposit biochemical substances onto the surface at a rate higher than loo droplets per second 'in most cases, the rate is higher than 1, 4 drops per second. Typically, the array of droplet generators spot the droplet onto the surface at a rate of more than 20 per second per droplet, and in many cases, the array of droplet generators is interposed The droplets are spotted onto the surface at a rate of 300,000 droplets per second to 1,000,000 droplets per second. The LOC probe spotting robot 273 using the ONEC 272 as a biochemical deposition device can easily deposit biochemical substances onto the surface at a density of more than one droplet per square millimeter. In the vast majority of cases, the spot density is more than 8 droplets per square millimeter. In most cases, the spot density is more than 60 droplets per square millimeter, and typically the density is between 500 droplets per square millimeter to 1,500 droplets per square millimeter. Conclusion The devices, systems, and methods described herein facilitate rapid, inexpensive, and suitable molecular diagnostic testing for local care. The above-described system and its components are merely illustrative, and many variations and modifications will be readily apparent to those skilled in the art without departing from the scope of the invention. BRIEF DESCRIPTION OF THE DRAWINGS The preferred embodiments of the present invention will now be described by way of example only with reference to the accompanying drawings in which: FIG. 1 shows a test module and test module configured for fluorescence detection. Reader; -260- 201209402 Figure 2 is a schematic diagram of the electronic components assembled in the test module for fluorescence detection; Figure 3 is a diagram of the electronic components in the test module reader槪Figure 4 is a schematic view of the structure of the LOC device; Figure 5 is a perspective view of the LOC device; Figure 6 is a plan view of the LOC device, with features and structures of all layers overlapping each other;
圖7係LOC裝置之平面圖,其單獨顯示上蓋之結構 圖8爲上蓋之上視圖,以虛線顯示內部通道及貯器; 圖9爲上蓋之分解上視圖,以虛線顯示內部通道及貯 器; 圖10爲上蓋之下視圖,其顯示上方通道之配置:Figure 7 is a plan view of the LOC device, showing the structure of the upper cover separately. Figure 8 is a top view of the upper cover, showing the internal passage and the reservoir in broken lines; Figure 9 is an exploded top view of the upper cover, showing the internal passage and the reservoir in broken lines; 10 is the lower cover view, which shows the configuration of the upper channel:
圖1 1係LOC裝置之平面圖,其獨立顯示CMOS + MST 裝置之結構;Figure 1 is a plan view of the LOC device, which independently shows the structure of the CMOS + MST device;
圖12係LOC裝置之樣本入口之截面示意圖; 圖13係圖6所示之AA區的放大圖; 圖14係圖6所示之AB區的放大圖; 圖I5係圖U所示之AE區的放大圖; 圖16之部份透視圖說明AE區內LOC裝置之分層結 圖17之部份透視圖說明AE區內LOC裝置之分層結 圖18之部份透視圖說明AE區內LOC裝置之分層結 -261 - 201209402 構; 圖19之部份透視圖說明AE區內LOC裝置之分層結 構; 圖20之部份透視圖說明AE區內LOC裝置之分層結 挫 . 稱, 圖21之部份透視圖說明AE區內LOC裝置之分層結 構; 圖22係圖21所示之溶胞試劑貯器之截面示意圖; 圖23之部份透視圖說明AB區內LOC裝置之分層結 構; 圖24之部份透視圖說明AB區內LOC裝置之分層結 構; 圖25之部份透視圖說明AI區內LOC裝置之分層結 構; 圖26之部份透視圖說明AB區內LOC裝置之分層結 構; 圖27之部份透視圖說明AB區內LOC裝置之分層結 挫 · 稱, 圖28之部份透視圖說明AB區內LOC裝置之分層結 構; 圖29之部份透視圖說明AB區內LOC裝置之分層結 稱, 圖3 0係擴增混合貯器及聚合酶貯器之截面示意圖; 圖31獨立顯示沸騰啓動閥之特徵; -262- 201209402 圖32係沸騰啓動閥之截面示意圖,該截面沿著圖31 中所示之線33-33取得; 圖33係圖15所示之AF區的放大圖; 圖34係透析部之上游端之截面示意圖,該截面沿著 圖33中所示之線3 5 -3 5取得; 圖35係圖6所示之AC區的放大圖; 圖36係AC區之再放大圖,該圖顯示擴增部;Figure 12 is a schematic cross-sectional view of the sample inlet of the LOC device; Figure 13 is an enlarged view of the AA region shown in Figure 6; Figure 14 is an enlarged view of the AB region shown in Figure 6; Figure I5 is the AE region shown in Figure U Figure 16 is a partial perspective view showing the layered junction of the LOC device in the AE area. Figure 17 is a perspective view showing the layered junction of the LOC device in the AE area. Figure 18 is a perspective view showing the LOC in the AE area. The layered structure of the device is -261 - 201209402; the partial perspective view of Figure 19 illustrates the layered structure of the LOC device in the AE area; the partial perspective view of Figure 20 illustrates the layered setback of the LOC device in the AE area. Figure 21 is a partial perspective view showing the layered structure of the LOC device in the AE area; Figure 22 is a schematic cross-sectional view of the lysis reagent reservoir shown in Figure 21; and a partial perspective view of Figure 23 illustrating the LOC device in the AB area Layer structure; Fig. 24 is a partial perspective view showing the layered structure of the LOC device in the AB zone; Fig. 25 is a partial perspective view showing the layered structure of the LOC device in the AI zone; The layered structure of the LOC device; a partial perspective view of Figure 27 illustrates the layered frustration of the LOC device in the AB zone, the portion of Figure 28 The view illustrates the layered structure of the LOC device in the AB zone; the partial perspective view of FIG. 29 illustrates the layered nomenclature of the LOC device in the AB zone, and FIG. 30 is a schematic cross-sectional view of the amplification mixing reservoir and the polymerase reservoir; 31 shows the characteristics of the boiling start valve independently; -262- 201209402 Figure 32 is a schematic cross-sectional view of the boiling start valve taken along line 33-33 shown in Figure 31; Figure 33 is the AF area shown in Figure 15. Figure 34 is a schematic cross-sectional view of the upstream end of the dialysis section taken along line 3 5 - 3 5 shown in Figure 33; Figure 35 is an enlarged view of the AC zone shown in Figure 6; A re-enlarged view of the AC area, which shows an amplification section;
圖37係AC區之再放大圖,該圖顯示擴增部; 圖38係AC區之再放大圖,該圖顯示擴增部; 圖39係圖38所示之AK區的再放大圖; 圖40係AC區之再放大圖,該圖顯示擴增室; 圖41係AC區之再放大圖,該圖顯示擴增部; 圖42係AC區之再放大圖,該圖顯示擴增室; 圖43係圖42所示之AL區的再放大圖; 圖44係AC區之再放大圖,該圖顯示擴增部; 圖45係圖44所示之AM區的再放大圖; 圖46係AC區之再放大圖,該圖顯示擴增室: 圖47係圖46所示之AN區的再放大圖; 圖48係AC區之再放大圖,該圖顯示擴增室; 圖49係AC區之再放大圖,該圖顯示擴增室; 圖50係AC區之再放大圖,該圖顯示擴增部; 圖51係擴增部之截面示意圖; 圖52係雜交部之放大平面圖; 圖53係二個獨立雜交室之再放大平面圖; -263- 201209402 圖54係單一雜交室之截面示意圖; 圖55係圖6所示之AG區中之增濕器的放大圖; 圖56係圖52所示之AD區的放大圖; 圖57係AD區之LOC裝置之分解透視圖; 圖58係呈封閉構型之FRET探針之圖式; 圖59係呈開放及經雜交構型之FRET探針之圖式; 圖60係激發光之時間-強度圖;Figure 37 is a re-enlarged view of the AC region, which shows an amplification portion; Figure 38 is a re-enlarged view of the AC region, which shows an amplification portion; Figure 39 is a re-enlarged view of the AK region shown in Figure 38; FIG. 41 is a re-enlarged view of the AC region, and FIG. 42 is a re-enlarged view of the AC region, which shows an amplification chamber; Figure 43 is a re-enlarged view of the AL region shown in Figure 42; Figure 44 is a re-enlarged view of the AC region, showing the amplification portion; Figure 45 is a re-enlargement view of the AM region shown in Figure 44; A re-enlarged view of the AC region, which shows an amplification chamber: Figure 47 is a re-enlarged view of the AN region shown in Figure 46; Figure 48 is a re-enlarged view of the AC region, which shows an amplification chamber; Figure 49 is an AC A re-enlarged view of the area, the figure shows an amplification chamber; FIG. 50 is a re-enlarged view of the AC area, which shows an amplification section; FIG. 51 is a schematic cross-sectional view of the amplification section; FIG. 52 is an enlarged plan view of the hybridization section; A re-enlarged plan view of two independent hybridization chambers of 53; -263- 201209402 Figure 54 is a schematic cross-sectional view of a single hybridization chamber; Figure 55 is an enlarged view of the humidifier in the AG region shown in Figure 6; Figure 52 is an enlarged perspective view of the LOC device of the AD region; Figure 58 is a schematic view of the FRET probe in a closed configuration; Figure 59 is an open and hybridized configuration. Figure of the FRET probe; Figure 60 is a time-intensity diagram of the excitation light;
圖61係雜交室陣列之激發光照幾何學之圖; 圖62係感應器電子技術LED光照幾何學之圖; 圖63係試劑分配機器人之平面示意圖: 圖64係具有內建液滴產生器之試劑微量瓶之透視圖 圖6 5係用於裝載經選擇之探針至探針射出器晶片之 寡核苷酸射出器機器人之平面示意圖;Figure 61 is a diagram of the excitation illumination geometry of the hybrid chamber array; Figure 62 is a diagram of the sensor electronics technology LED illumination geometry; Figure 63 is a schematic diagram of the reagent dispensing robot: Figure 64 is a reagent with a built-in droplet generator Perspective view of the micro vial Figure 6 5 is a schematic plan view of an oligonucleotide injector robot for loading a selected probe to a probe injector wafer;
圖66係用於裝載探針至部分深度切割之矽晶圓上的 LOC裝置中之探針點樣機器人之平面示意圖; 圖67係圖6之AH區所示之濕度感測器之放大平面 圖; 圖68示意顯示光感應器之光電二極體陣列之部分; 圖69係單一光電二極體之電路圖; 圖70係光電二極體控制信號之時間圖; 圖71顯示寡核苷酸射出器晶片(ONEC); 圖72顯示如圖71之AO區中所示之ONEC的液滴產 生器之陣列: -264- 201209402 圖73係該液滴產生器之陣列之截面示意圖,該截面 沿著圖72中所示之線73 -73取得; 圖74係圖55之AP區所示之蒸發器之放大圖; 圖75爲具有偵測光電二極體和觸發光電二極體之雜 交室的截面示意圖; 圖76顯示連接子引發之PCR ; 圖77爲具刺血針之測試模組之代表圖;Figure 66 is a plan view of a probe spotting robot used in a LOC device for loading a probe onto a partially deep cut germanium wafer; Figure 67 is an enlarged plan view of the humidity sensor shown in the AH region of Figure 6; Figure 68 is a schematic view showing a portion of a photodiode array of a photosensor; Figure 69 is a circuit diagram of a single photodiode; Figure 70 is a timing diagram of a photodiode control signal; and Figure 71 is an illustration of an oligonucleotide emitter wafer. (ONEC); Figure 72 shows an array of droplet generators for the ONEC shown in the AO region of Figure 71: -264 - 201209402 Figure 73 is a schematic cross-sectional view of the array of droplet generators, the section along Figure 72 Figure 74 is an enlarged view of the evaporator shown in the AP area of Figure 55; Figure 75 is a schematic cross-sectional view of the hybridization chamber having the detecting photodiode and the triggering photodiode; Figure 76 shows the PCR initiated by the linker; Figure 77 is a representative view of the test module with the lancet;
圖78爲LOC變體VII之結構之代表圖; 圖79爲LOC變體VIII之結構之代表圖; 圖80爲LOC變體XIV之結構之代表圖; 圖81爲LOC變體XLI之結構之代表圖; 圖82爲LOC變體XLIII之結構之代表圖; 圖83爲LOC變體XLIV之結構之代表圖; 圖84爲LOC變體XLVII之結構之代表圖; 圖8 5爲第一輪擴增期間與引子連接之線性螢光探針 之圖; 圖86爲後續擴增週期期間與引子連接之線性螢光探 針之圖; 圖87A至87F以圖式說明與引子連接之螢光莖環探針 之加熱循環; 圖88爲激發LED相對於雜交室陣列及光電二極體之 示意圖; 圖89爲用於引導光照至LOC裝置之雜交室陣列之激 發LED和光學透鏡之示意圖; -265- 201209402 圖90爲用於引導光照至LOC裝置之雜交室陣列之激 發LED、光學透鏡和光學稜鏡之示意圖; 圖91爲用於引導光照至LOC裝置之雜交室陣列之激 發LED、光學透鏡和鏡子排列之示意圖; 圖92係用於裝載探針至可分離之PCB上的LOC裝置 中之探針點樣機器人之平面示意圖; 圖93係顯示所有特徵彼此互相交疊之平面圖,並標 不DA至DK區之位置; 圖94係圖93所示之DG區的放大圖; 圖95係圖93所示之DH區的放大圖; 圖96顯示光電二極體之分流電晶體之一個實施態樣 t 圖97顯示光電二極體之分流電晶體之一個實施態樣 » 圖98顯示光電二極體之分流電晶體之一個實施態樣 » 圖99係差分成像儀之電路圖; 圖100示意說明陰性對照螢光探針之莖環構型: 圖1 〇 1示意說明圖1 〇〇之陰性對照螢光探針之開放構 型; 圖1 02示意說明陽性對照螢光探針之莖環構型; 圖1 03示意說明圖1 02之陽性對照螢光探針之開放構 型; 圖1 04顯示經組構以用於ECL偵測之測試模組及測試 -266- 201209402 模組閱讀器; 圖1 05係經組構以用於ECL偵測之測試模組中之電子 組件之圖式槪要; 圖1 06顯示測試模組及選擇性測試模組閱讀器; 圖1 07顯示測試模組及測試模組閱讀器與儲存各種資 料庫的主機系統; 圖1 08係試劑點樣機器人之側視示意圖;Figure 78 is a representation of the structure of LOC variant VII; Figure 79 is a representative representation of the structure of LOC variant VIII; Figure 80 is a representative representation of the structure of LOC variant XIV; Figure 81 is representative of the structure of LOC variant XLI Figure 82 is a representative view of the structure of the LOC variant XLIII; Figure 83 is a representative view of the structure of the LOC variant XLIV; Figure 84 is a representative representation of the structure of the LOC variant XLVII; Figure 8 is a first round of amplification Figure of linear fluorescent probe connected to the primer during the period; Figure 86 is a diagram of the linear fluorescent probe connected to the primer during the subsequent amplification cycle; Figure 87A to 87F illustrate the fluorescent stem probe connected to the primer Figure 88 is a schematic diagram of an excitation LED relative to a hybridization chamber array and a photodiode; Figure 89 is a schematic diagram of an excitation LED and an optical lens for directing illumination to an array of hybridization chambers of a LOC device; -265- 201209402 Figure 90 is a schematic illustration of an excitation LED, an optical lens, and an optical raft for directing illumination to an array of hybrid chambers of a LOC device; Figure 91 is an excitation LED, optical lens, and mirror arrangement for an array of hybridization chambers for directing illumination to the LOC device Schematic diagram; Figure 92 is for loading A schematic plan view of the probe spotting robot in the LOC device on the detachable PCB; Fig. 93 is a plan view showing that all the features overlap each other, and the position of the DA to the DK area is not indicated; Fig. 94 is Fig. 93 An enlarged view of the DG region shown; Fig. 95 is an enlarged view of the DH region shown in Fig. 93; Fig. 96 shows an embodiment of the shunt transistor of the photodiode t. Fig. 97 shows the shunt of the photodiode One embodiment of the crystal» Figure 98 shows an embodiment of a shunt transistor for a photodiode. Figure 99 is a circuit diagram of a differential imager. Figure 100 is a schematic illustration of the stem-loop configuration of a negative control fluorescent probe: 1 〇1 schematically illustrates the open configuration of the negative control fluorescent probe of Fig. 1; Fig. 1 02 schematically illustrates the stem loop configuration of the positive control fluorescent probe; Fig. 1 03 schematically illustrates the positive control fluorescing of Fig. 102 The open configuration of the optical probe; Figure 1 04 shows the test module configured for ECL detection and the test -266-201209402 module reader; Figure 1 05 is configured for ECL detection The schematic diagram of the electronic components in the test module; Figure 1 06 shows the test Test groups and optionally reader module; FIG. 107 shows the host system test module and the test module reader and stores various materials library resources; schematic side view 108 of the robot-based spotting agents;
圖109爲具多裝置微流體裝置之電化學發光基底測試 模組之代表圖。 【主要元件符號說明】 1 〇 :測試模組 1 1 :測試模組 1 2 ’·測試模組閱讀器 13 :外殼 14 :微型USB接頭 15 :電感器 16 :微型USB埠 1 7 :觸控螢幕 18 :顯示螢幕 19 :按鍵 20 :開始鍵 - 21 :蜂巢式無線電 22 :無菌密封膠帶 -267- 201209402 2 3 :無線網路連接 24 :大容器 2 5 :衛星導航系統 26 :發光二極體 2 7 :資料儲存器 29 : USB相容性LED驅動器 30 :實驗室晶片(LOC)裝置Figure 109 is a representation of an electrochemiluminescent substrate test module with a multi-device microfluidic device. [Main component symbol description] 1 〇: Test module 1 1 : Test module 1 2 '· Test module reader 13 : Shell 14 : Micro USB connector 15 : Inductor 16: Micro USB 埠 1 7 : Touch screen 18 : Display screen 19 : Button 20 : Start button - 21 : Honeycomb radio 22 : Aseptic sealing tape -267- 201209402 2 3 : Wireless network connection 24 : Large container 2 5 : Satellite navigation system 26 : Light-emitting diode 2 7: Data Storage 29: USB Compatibility LED Driver 30: Laboratory Chip (LOC) Device
3 1 :電源調節器 32 :電容器 33 :時鐘 34 :控制器 35 :暫存器 36: USB裝置驅動器 37 :驅動器3 1 : Power conditioner 32 : Capacitor 33 : Clock 34 : Controller 35 : Register 36 : USB device driver 37 : Driver
38 : RAM38 : RAM
39 : ECL激發驅動器 40 :程式及資料快閃記憶體 41 :暫存器 42 :處理器 43 :程式儲存器 44 :光感應器 45 :指示器 46 :上蓋 47 :僅USB電力/指示器模組 -268- 201209402 48: COMS + MST 晶片 49 :多孔元件 51 :上蓋 52 :雜交及檢測部 54 :貯器 56 :貯器39 : ECL excitation driver 40 : program and data flash memory 41 : register 42 : processor 43 : program memory 44 : light sensor 45 : indicator 46 : upper cover 47 : USB power / indicator module only -268- 201209402 48: COMS + MST Wafer 49: Porous Element 51: Upper Cover 52: Hybridization and Detection Section 54: Reservoir 56: Reservoir
57 :印刷電路板(PCB) 5 8 :貯器 60 :貯器 62 :貯器 64 :下密封層 66 :頂部層 68 :樣品入口 70 :病原體透析部 72 :廢料通道 74 :標靶通道 76 :廢料單元(貯器) 78 :貯器層 80 :上蓋通道層 8 2 :上密封層 84 :矽基板 86 : CMOS 電路 87 : MST 層 8 8 :鈍化層 -269 - 201209402 90 : MST通道 92 :下降口 94 :上蓋通道 96 :上升口 97 :壁部 98 :彎液面錨定器 1 00 : MST通道層57: Printed Circuit Board (PCB) 5 8 : Reservoir 60: Reservoir 62: Reservoir 64: Lower Sealing Layer 66: Top Layer 68: Sample Inlet 70: Pathogen Dialysis Section 72: Waste Channel 74: Target Channel 76: Waste unit (reservoir) 78: reservoir layer 80: upper cover channel layer 8 2: upper sealing layer 84: 矽 substrate 86: CMOS circuit 87: MST layer 8 8 : passivation layer - 269 - 201209402 90 : MST channel 92: descent Port 94: Upper cover channel 96: Ascending port 97: Wall 98: Meniscus anchor 1 00 : MST channel layer
101 :膝上型電腦/筆電 102 :毛細起始特徵(CIF) 103 :專用閱讀器 105 :桌上型電腦 106 :沸騰啓動閥 107 :電子書閱讀器 108 :沸騰啓動閥 109 :平板電腦101: laptop/notebook 102: capillary start feature (CIF) 103: dedicated reader 105: desktop computer 106: boiling start valve 107: e-book reader 108: boiling start valve 109: tablet
1 1 〇 :雜交室陣列 1 1 1 :流行病學資料主機系統 1 1 2 :擴增部 1 1 4 :培養部 1 1 5 :電子化健康記錄(EHR)主機系統 1 1 6 :抗凝血劑 1 1 8 :表面張力閥 1 20 :彎液面 121 :電子化醫療記錄(EMR)主機系統 -270- 201209402 122 :通氣孔 123 :個人健康記錄(PHR)主機系統 125 :網路1 1 〇: hybridization chamber array 1 1 1 : epidemiological data host system 1 1 2 : amplification unit 1 1 4 : culture unit 1 1 5 : electronic health record (EHR) host system 1 1 6 : anticoagulation Agent 1 1 8 : Surface tension valve 1 20 : Meniscus 121 : Electronic Medical Record (EMR) Host System - 270 - 201209402 122 : Vent 123 : Personal Health Record (PHR) Host System 125 : Network
126 :沸騰啓動閥 1 28 :表面張力閥 1 3 0 :化學溶胞部 1 3 1 :混合部 132:表面張力閥 1 3 3 :培養器入口通道 1 34 :下降口 136 :光窗 146 :閥入口 1 4 8 :閥出口 1 50 :下降口 1 5 2 :加熱器 153 :閥加熱器接點 1 5 4 :加熱器 1 5 6 :加熱器接點 1 5 8 :擴增微通道 160 :擴增部出口通道 164 :孔陣列 166 :毛細起始特徵 168 :透析上升孔 170 :溫度感測器 -271 - 201209402 174 :液體感測器 1 7 5 :擴散屏障 1 7 6 :流路 1 7 8 :終點液體感測器 1 80 :雜交室 1 8 2 :加熱器 1 84 :光電二極體 18 5:主動區 186 :寡核苷酸FRET探針 187:觸發光電二極體 1 8 8 :貯水器 190 :蒸發器 1 9 1 :加熱器 192 :供水通道 1 93 :上升口 1 94 :下降口 1 9 5 :頂金屬層 196 :增濕器 198 :第一上升孔 202 :毛細起始特徵 204:透析MST通道 208 :液體感測器 2 1 0 :培養微通道 2 1 2 中間M S T通道 201209402 218 : TiAl 電極 220 : TiAl 電極 222 :間隙 232 :濕度感測器 2 3 4 :加熱器 236 : FRET 探針 237 : ECL 探針126: boiling start valve 1 28 : surface tension valve 1 3 0 : chemical lysis unit 1 3 1 : mixing portion 132: surface tension valve 1 3 3 : incubator inlet passage 1 34 : lowering port 136: light window 146 : valve Inlet 1 4 8 : Valve outlet 1 50 : Drop port 1 5 2 : Heater 153 : Valve heater contact 1 5 4 : Heater 1 5 6 : Heater contact 1 5 8 : Amplification microchannel 160 : Expansion Addition exit channel 164: aperture array 166: capillary initiation feature 168: dialysis riser aperture 170: temperature sensor - 271 - 201209402 174: liquid sensor 1 7 5 : diffusion barrier 1 7 6 : flow path 1 7 8 : Endpoint liquid sensor 1 80 : Hybridization chamber 1 8 2 : Heater 1 84 : Photodiode 18 5: Active region 186: Oligonucleotide FRET probe 187: Trigger photodiode 1 8 8 : Water storage 190: evaporator 1 9 1 : heater 192 : water supply passage 1 93 : rising port 1 94 : lowering port 1 9 5 : top metal layer 196 : humidifier 198 : first rising hole 202 : capillary starting feature 204 : Dialysis MST channel 208: Liquid sensor 2 1 0 : Culture microchannel 2 1 2 Intermediate MST channel 201209402 218 : TiAl electrode 220 : TiAl electrode 222 : Gap 232 : Humidity sensor 2 3 4 : Heat 236: FRET Probe 237: ECL Probe
23 8 :標靶核酸序列 240 :環 242 :莖 244 :激發光 246 :螢光團 2 4 8 :淬熄劑 250 :螢光發射 252 :光學中心23 8 : Target nucleic acid sequence 240 : Ring 242 : Stem 244 : Excitation light 246 : Fluorescent group 2 4 8 : Quencher 250 : Fluorescence emission 252 : Optical center
256 :試劑分配機器人 25 8 :微量瓶 2 5 9 :容器 260 :部分深度切割之矽晶圓 2 6 1 :壓電致動器 262 :液滴分配器 263 :控制微處理器 264 :電接觸件 -273- 201209402 265 :夾具 266 :品質保證晶片 26 8 : XY平台 270 :配準相機 2 7 1 :熱液滴產生器 272 :寡核苷酸射出器晶片(ONEC) 273 :探針點樣機器人256: Reagent dispensing robot 25 8 : Micro vial 2 5 9 : Container 260 : Partially deep cut 矽 wafer 2 6 1 : Piezoelectric actuator 262 : Droplet dispenser 263 : Control microprocessor 264 : Electrical contact -273- 201209402 265 : Fixture 266 : Quality Assurance Wafer 26 8 : XY Stage 270 : Registration Camera 2 7 1 : Thermal Drop Generator 272 : Oligonucleotide Injector Wafer (ONEC) 273 : Probe Spotting Robot
274 : ONEC再塡充機器人 275 :單片矽基板 276 : ONEC 銲墊 2 7 7 :貯器側 2 7 8 :貯器 279 :射出器側 2 8 0 :致動器 2 8 1 :快閃記憶體274 : ONEC refill robot 275 : Monolithic 矽 substrate 276 : ONEC pad 2 7 7 : Reservoir side 2 7 8 : Reservoir 279 : Emitter side 2 8 0 : Actuator 2 8 1 : Flash memory body
28 2 :共同室 28 3 :噴嘴 2 8 4 :室入口 2 8 5 : ONEC CMOS 結構 286:機械/電氣架 2 8 7 :射出器 2 8 8 :樣品輸入及製備 2 8 9 : LOC點樣機器人 290 :萃取 -274- 201209402 2 9 1 :培養 292 :擴增 294 :檢測 296 :第一電極 298 :第二電極 300:預編程延遲 301 :實驗室晶片(LOC)裝置28 2 : Common room 28 3 : Nozzle 2 8 4 : Chamber entrance 2 8 5 : ONEC CMOS structure 286: Mechanical / electrical frame 2 8 7 : Injector 2 8 8 : Sample input and preparation 2 8 9 : LOC spotting robot 290: Extraction - 274 - 201209402 2 9 1 : Culture 292 : Amplification 294 : Detection 296 : First electrode 298 : Second electrode 300 : Preprogrammed delay 301 : Laboratory wafer (LOC) device
3 76 :導電柱 3 78 :陽性對照探針 3 80 :陰性對照探針 3 82 :校準室 3 8 4 :閘極 3 8 6 :閑極 3 8 8 :閘極 3 9 0 :刺血針 3 92 :刺血針釋放鍵 3 9 3 :閘極 3 94 : Mshunt 電晶體 3 96 : MOS電晶體 398: MOS電晶體 400: MOS電晶體 402: MOS電晶體 404 : MOS電晶體 4 0 6 :節點 -275- 201209402 408 :膜密封件 4 1 0 :膜防護件 6 8 2 :小組分透析部 6 8 6 :透析部 692 :與引子連接之線性探針 694 :擴增阻斷物 696 :探針序列3 76 : Conductive column 3 78 : Positive control probe 3 80 : Negative control probe 3 82 : Calibration chamber 3 8 4 : Gate 3 8 6 : Idle 3 8 8 : Gate 3 9 0 : Lancet 3 92: lancet release button 3 9 3 : gate 3 94 : Mshunt transistor 3 96 : MOS transistor 398: MOS transistor 400: MOS transistor 402: MOS transistor 404 : MOS transistor 4 0 6 : node -275- 201209402 408: Membrane seal 4 1 0 : Membrane guard 6 8 2 : Small component dialysis section 6 8 6 : Dialysis section 692 : Linear probe 694 connected to the primer: Amplification blocker 696 : Probe sequence
6 9 8 :序列 700 :寡核苷酸引子 704 :與引子連接之莖環探針 706 :互補序列 708 :莖股 710 :另一股6 9 8 : Sequence 700 : Oligonucleotide primer 704 : Stem loop probe linked to primer 706 : Complementary sequence 708 : Stem strand 710 : Another strand
7 1 2 :第一光學稜鏡 7 1 4 :第二光學稜鏡 7 1 6 :第一鏡 7 1 8 :第二鏡 720 : PCB 晶圓 728 : LOC 變體 X 766 :廢料貯器 778 :構型 780 :構型 7 82 :構型 783 :微流體裝置 -276- 201209402 784 :透析裝置 78 5 : LOC 裝置 78 8 :差分成像儀電路 7 9 0 :像素 7 9 2 :虛擬像素 794 :讀取_列 795 :讀取_列_d7 1 2 : first optical 稜鏡 7 1 4 : second optical 稜鏡 7 1 6 : first mirror 7 1 8 : second mirror 720 : PCB wafer 728 : LOC variant X 766 : waste receptacle 778 : Configuration 780: Configuration 7 82: Configuration 783: Microfluidic Device - 276 - 201209402 784: Dialysis Device 78 5 : LOC Device 78 8 : Differential Imager Circuit 7 9 0 : Pixel 7 9 2 : Virtual Pixel 794: Read Take _column 795: read_column_d
796 :陰性對照探針 797 : M4 798 :陽性對照探針 801 : MD4 8 0 3 :像素電容器 8 05 :虛擬像素電容器 8 0 7 :開關 809 :開關 811 : “讀取—行”開關 8 13 :虛擬“讀取_行”開 8 1 5 :開關電容放大器 817 :示差訊號 8 60 : ECL激發電極 8 70 : ECL激發電極796: Negative control probe 797 : M4 798 : Positive control probe 801 : MD4 8 0 3 : Pixel capacitor 8 05 : Virtual pixel capacitor 8 0 7 : Switch 809 : Switch 811 : "Read - line" switch 8 13 : Virtual "read_row" open 8 1 5: switched capacitor amplifier 817: differential signal 8 60 : ECL excitation electrode 8 70 : ECL excitation electrode
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TW100119245A TW201209405A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with flow-channel structure having active valve for capillary-driven fluidic propulsion without trapped air bubbles |
TW100119238A TW201211532A (en) | 2010-06-17 | 2011-06-01 | LOC device with parallel incubation and parallel DNA and RNA amplification functionality |
TW100119241A TW201211533A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device for simultaneous detection of multiple conditions in a patient |
TW100119227A TW201211538A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection with dialysis, chemical lysis and tandem nucleic acid amplification |
TW100119250A TW201211244A (en) | 2010-06-17 | 2011-06-01 | Test module with diffusive mixing in small cross sectional area microchannel |
TW100119243A TW201211242A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device for genetic and mitochondrial analysis of a biological sample |
TW100119231A TW201211539A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection and genetic analysis with chemical lysis, incubation and tandem nucleic acid amplification |
TW100119224A TW201209402A (en) | 2010-06-17 | 2011-06-01 | Apparatus for loading oligonucleotide spotting devices and spotting oligonucleotide probes |
TW100119223A TW201219770A (en) | 2010-06-17 | 2011-06-01 | Test module incorporating spectrometer |
TW100119248A TW201211243A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with dialysis section having stomata tapering counter to flow direction |
TW100119252A TW201219115A (en) | 2010-06-17 | 2011-06-01 | Microfluidic test module with flexible membrane for internal microenvironment pressure-relief |
TW100119249A TW201211534A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with PCR section and diffusion mixer |
TW100119237A TW201209404A (en) | 2010-06-17 | 2011-06-01 | LOC device for genetic analysis which performs nucleic acid amplification before removing non-nucleic acid constituents in a dialysis section |
TW100119234A TW201211540A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection and genetic analysis with dialysis and nucleic acid amplification |
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TW100119246A TW201209406A (en) | 2010-06-17 | 2011-06-01 | Test module with microfluidic device having LOC and dialysis device for separating pathogens from other constituents in a biological sample |
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TW100119238A TW201211532A (en) | 2010-06-17 | 2011-06-01 | LOC device with parallel incubation and parallel DNA and RNA amplification functionality |
TW100119241A TW201211533A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device for simultaneous detection of multiple conditions in a patient |
TW100119227A TW201211538A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection with dialysis, chemical lysis and tandem nucleic acid amplification |
TW100119250A TW201211244A (en) | 2010-06-17 | 2011-06-01 | Test module with diffusive mixing in small cross sectional area microchannel |
TW100119243A TW201211242A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device for genetic and mitochondrial analysis of a biological sample |
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TW100119223A TW201219770A (en) | 2010-06-17 | 2011-06-01 | Test module incorporating spectrometer |
TW100119248A TW201211243A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with dialysis section having stomata tapering counter to flow direction |
TW100119252A TW201219115A (en) | 2010-06-17 | 2011-06-01 | Microfluidic test module with flexible membrane for internal microenvironment pressure-relief |
TW100119249A TW201211534A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with PCR section and diffusion mixer |
TW100119237A TW201209404A (en) | 2010-06-17 | 2011-06-01 | LOC device for genetic analysis which performs nucleic acid amplification before removing non-nucleic acid constituents in a dialysis section |
TW100119234A TW201211540A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection and genetic analysis with dialysis and nucleic acid amplification |
TW100119228A TW201209158A (en) | 2010-06-17 | 2011-06-01 | LOC device for genetic analysis with dialysis, chemical lysis and tandem nucleic acid amplification |
TW100119226A TW201211240A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection with dialysis, thermal lysis, nucleic acid amplification and prehybridization filtering |
TW100119251A TW201209159A (en) | 2010-06-17 | 2011-06-01 | Genetic analysis LOC with non-specific nucleic acid amplification section and subsequent specific amplification of particular sequences in a separate section |
TW100119253A TW201219776A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with conductivity sensor |
TW100119235A TW201209403A (en) | 2010-06-17 | 2011-06-01 | LOC device for genetic analysis which performs nucleic acid amplification after sample preparation in a dialysis section |
TW100119246A TW201209406A (en) | 2010-06-17 | 2011-06-01 | Test module with microfluidic device having LOC and dialysis device for separating pathogens from other constituents in a biological sample |
TW100119254A TW201209407A (en) | 2010-06-17 | 2011-06-01 | Microfluidic device with reagent mixing proportions determined by number of active outlet valves |
TW100119232A TW201211241A (en) | 2010-06-17 | 2011-06-01 | LOC device for pathogen detection, genetic analysis and proteomic analysis with dialysis, chemical lysis, incubation and tandem nucleic acid amplification |
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2011
- 2011-06-01 TW TW100119245A patent/TW201209405A/en unknown
- 2011-06-01 TW TW100119238A patent/TW201211532A/en unknown
- 2011-06-01 TW TW100119241A patent/TW201211533A/en unknown
- 2011-06-01 TW TW100119227A patent/TW201211538A/en unknown
- 2011-06-01 TW TW100119250A patent/TW201211244A/en unknown
- 2011-06-01 TW TW100119243A patent/TW201211242A/en unknown
- 2011-06-01 TW TW100119231A patent/TW201211539A/en unknown
- 2011-06-01 TW TW100119224A patent/TW201209402A/en unknown
- 2011-06-01 TW TW100119223A patent/TW201219770A/en unknown
- 2011-06-01 TW TW100119248A patent/TW201211243A/en unknown
- 2011-06-01 TW TW100119252A patent/TW201219115A/en unknown
- 2011-06-01 TW TW100119249A patent/TW201211534A/en unknown
- 2011-06-01 TW TW100119237A patent/TW201209404A/en unknown
- 2011-06-01 TW TW100119234A patent/TW201211540A/en unknown
- 2011-06-01 TW TW100119228A patent/TW201209158A/en unknown
- 2011-06-01 TW TW100119226A patent/TW201211240A/en unknown
- 2011-06-01 TW TW100119251A patent/TW201209159A/en unknown
- 2011-06-01 TW TW100119253A patent/TW201219776A/en unknown
- 2011-06-01 TW TW100119235A patent/TW201209403A/en unknown
- 2011-06-01 TW TW100119246A patent/TW201209406A/en unknown
- 2011-06-01 TW TW100119254A patent/TW201209407A/en unknown
- 2011-06-01 TW TW100119232A patent/TW201211241A/en unknown
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
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TWI818596B (en) * | 2022-06-22 | 2023-10-11 | 嘉碩生醫電子股份有限公司 | Shear-mode liquid-phase sensor having groove structure and methods of manufacturing and using the same |
TWI840226B (en) * | 2023-05-17 | 2024-04-21 | 博錸生技股份有限公司 | Automatic sample preparation system |
Also Published As
Publication number | Publication date |
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TW201209406A (en) | 2012-03-01 |
TW201219115A (en) | 2012-05-16 |
TW201211243A (en) | 2012-03-16 |
TW201219770A (en) | 2012-05-16 |
TW201211533A (en) | 2012-03-16 |
TW201211539A (en) | 2012-03-16 |
TW201209405A (en) | 2012-03-01 |
TW201209159A (en) | 2012-03-01 |
TW201211242A (en) | 2012-03-16 |
TW201211241A (en) | 2012-03-16 |
TW201209158A (en) | 2012-03-01 |
TW201209403A (en) | 2012-03-01 |
TW201209407A (en) | 2012-03-01 |
TW201219776A (en) | 2012-05-16 |
TW201209404A (en) | 2012-03-01 |
TW201211538A (en) | 2012-03-16 |
TW201211540A (en) | 2012-03-16 |
TW201211244A (en) | 2012-03-16 |
TW201211534A (en) | 2012-03-16 |
TW201211240A (en) | 2012-03-16 |
TW201211532A (en) | 2012-03-16 |
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