RU2015139609A - Способы и композиции для секвенирования нуклеиновой кислоты, основанные на наноструктуре - Google Patents
Способы и композиции для секвенирования нуклеиновой кислоты, основанные на наноструктуре Download PDFInfo
- Publication number
- RU2015139609A RU2015139609A RU2015139609A RU2015139609A RU2015139609A RU 2015139609 A RU2015139609 A RU 2015139609A RU 2015139609 A RU2015139609 A RU 2015139609A RU 2015139609 A RU2015139609 A RU 2015139609A RU 2015139609 A RU2015139609 A RU 2015139609A
- Authority
- RU
- Russia
- Prior art keywords
- nucleic acid
- target nucleic
- acid molecule
- sequencing
- polymerase
- Prior art date
Links
- 108020004707 nucleic acids Proteins 0.000 title claims 48
- 150000007523 nucleic acids Chemical class 0.000 title claims 48
- 102000039446 nucleic acids Human genes 0.000 title claims 48
- 238000000034 method Methods 0.000 title claims 41
- 239000002086 nanomaterial Substances 0.000 title claims 20
- 239000000203 mixture Substances 0.000 title 1
- 238000012163 sequencing technique Methods 0.000 claims 36
- 239000002777 nucleoside Substances 0.000 claims 30
- -1 nucleoside triphosphate Chemical class 0.000 claims 30
- 235000011178 triphosphate Nutrition 0.000 claims 30
- 239000001226 triphosphate Substances 0.000 claims 30
- 239000007787 solid Substances 0.000 claims 19
- 239000000758 substrate Substances 0.000 claims 15
- 239000000872 buffer Substances 0.000 claims 10
- 102000004163 DNA-directed RNA polymerases Human genes 0.000 claims 8
- 238000001514 detection method Methods 0.000 claims 8
- 239000003153 chemical reaction reagent Substances 0.000 claims 7
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 claims 6
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 claims 6
- 108090000626 DNA-directed RNA polymerases Proteins 0.000 claims 6
- 102000004190 Enzymes Human genes 0.000 claims 3
- 108090000790 Enzymes Proteins 0.000 claims 3
- 238000002360 preparation method Methods 0.000 claims 3
- 108020004513 Bacterial RNA Proteins 0.000 claims 2
- 102000003960 Ligases Human genes 0.000 claims 2
- 108090000364 Ligases Proteins 0.000 claims 2
- PXHVJJICTQNCMI-UHFFFAOYSA-N Nickel Chemical compound [Ni] PXHVJJICTQNCMI-UHFFFAOYSA-N 0.000 claims 2
- 239000012472 biological sample Substances 0.000 claims 2
- 239000011159 matrix material Substances 0.000 claims 2
- 239000002071 nanotube Substances 0.000 claims 2
- 239000002070 nanowire Substances 0.000 claims 2
- 238000006116 polymerization reaction Methods 0.000 claims 2
- 239000000523 sample Substances 0.000 claims 2
- 241001515965 unidentified phage Species 0.000 claims 2
- 239000011534 wash buffer Substances 0.000 claims 2
- 244000063299 Bacillus subtilis Species 0.000 claims 1
- 235000014469 Bacillus subtilis Nutrition 0.000 claims 1
- RYGMFSIKBFXOCR-UHFFFAOYSA-N Copper Chemical compound [Cu] RYGMFSIKBFXOCR-UHFFFAOYSA-N 0.000 claims 1
- 241000588724 Escherichia coli Species 0.000 claims 1
- 101710137500 T7 RNA polymerase Proteins 0.000 claims 1
- 108010006785 Taq Polymerase Proteins 0.000 claims 1
- 108010028263 bacteriophage T3 RNA polymerase Proteins 0.000 claims 1
- 239000011230 binding agent Substances 0.000 claims 1
- 239000012148 binding buffer Substances 0.000 claims 1
- 238000003776 cleavage reaction Methods 0.000 claims 1
- 229910052802 copper Inorganic materials 0.000 claims 1
- 239000010949 copper Substances 0.000 claims 1
- 230000009089 cytolysis Effects 0.000 claims 1
- 239000012530 fluid Substances 0.000 claims 1
- 239000011521 glass Substances 0.000 claims 1
- 238000002955 isolation Methods 0.000 claims 1
- 239000012139 lysis buffer Substances 0.000 claims 1
- 229910052759 nickel Inorganic materials 0.000 claims 1
- 239000002773 nucleotide Substances 0.000 claims 1
- 125000003729 nucleotide group Chemical group 0.000 claims 1
- 230000007017 scission Effects 0.000 claims 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361766925P | 2013-02-20 | 2013-02-20 | |
| US61/766,925 | 2013-02-20 | ||
| PCT/US2014/017419 WO2014130686A2 (en) | 2013-02-20 | 2014-02-20 | Methods and compositions for nanostructure-based nucleic acid sequencing |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| RU2015139609A true RU2015139609A (ru) | 2017-03-24 |
Family
ID=51351616
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2015139609A RU2015139609A (ru) | 2013-02-20 | 2014-02-20 | Способы и композиции для секвенирования нуклеиновой кислоты, основанные на наноструктуре |
Country Status (10)
| Country | Link |
|---|---|
| US (2) | US9725763B2 (enExample) |
| EP (1) | EP2958927A4 (enExample) |
| JP (1) | JP2016507249A (enExample) |
| KR (1) | KR20150119353A (enExample) |
| CN (1) | CN105308062A (enExample) |
| AU (1) | AU2014218911B2 (enExample) |
| CA (1) | CA2900921A1 (enExample) |
| HK (1) | HK1221227A1 (enExample) |
| RU (1) | RU2015139609A (enExample) |
| WO (1) | WO2014130686A2 (enExample) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2808079C2 (ru) * | 2018-12-06 | 2023-11-23 | Эрбер Актиенгезелльшафт | Биомаркер |
Families Citing this family (15)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3633370B1 (en) | 2011-05-27 | 2024-05-01 | Oxford Nanopore Technologies plc | Method and apparatus for determining the presence, absence or characteristics of an analyte |
| EP3575414B1 (en) | 2013-05-06 | 2023-09-06 | Pacific Biosciences of California, Inc. | Real-time electronic sequencing |
| GB201406155D0 (en) | 2014-04-04 | 2014-05-21 | Oxford Nanopore Tech Ltd | Method |
| EP3126515B1 (en) | 2014-04-04 | 2018-08-29 | Oxford Nanopore Technologies Limited | Method for characterising a double stranded nucleic acid using a nano-pore and anchor molecules at both ends of said nucleic acid |
| GB201418469D0 (en) * | 2014-10-17 | 2014-12-03 | Oxford Nanopore Tech Ltd | Method |
| EP3332032B1 (en) | 2015-08-06 | 2023-12-27 | Pacific Biosciences Of California, Inc. | Integrated circuits for selectively addressing sparsely arranged electronic measurement devices |
| CN105170209B (zh) * | 2015-10-15 | 2017-05-10 | 华中科技大学 | 一种表面图案化修饰的基片及其制备方法 |
| JP7280590B2 (ja) * | 2016-01-28 | 2023-05-24 | ロズウェル バイオテクノロジーズ，インコーポレイテッド | 大スケールの分子電子工学センサアレイを使用する被分析物を測定するための方法および装置 |
| KR102184637B1 (ko) * | 2016-08-04 | 2020-11-30 | 연세대학교 원주산학협력단 | 퀀타매트릭스 어세이 플랫폼 기반 결핵 및 비결핵 항산균의 검출 및 동정과 결핵균의 리팜핀 내성여부를 동시 확인할 수 있는 진단법 및 그 키트 |
| CN106244712B (zh) * | 2016-08-31 | 2019-11-19 | 北京大学 | Dna测序方法 |
| CA3052140A1 (en) * | 2017-01-19 | 2018-07-26 | Roswell Biotechnologies, Inc. | Solid state sequencing devices comprising two dimensional layer materials |
| JP6559814B2 (ja) * | 2018-01-26 | 2019-08-14 | 株式会社日立ハイテクノロジーズ | 生体分子測定方法 |
| KR20220022087A (ko) * | 2019-06-18 | 2022-02-24 | 일루미나, 인코포레이티드 | 전도성 채널에 대한 중합효소 부착 |
| CN110452817A (zh) * | 2019-07-08 | 2019-11-15 | 广东工业大学 | 一种dna测序装置及测序方法 |
| CN111455034B (zh) * | 2020-04-09 | 2024-04-09 | 苏州罗岛纳米科技有限公司 | 一种基于固态纳米孔机构的单分子检测方法和系统 |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| US5693489A (en) | 1984-03-30 | 1997-12-02 | Associated Universities, Inc. | Cloning and expression of the gene for bacteriophage T7 RNA polymerase |
| US5795782A (en) * | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
| US20020172953A1 (en) * | 1996-07-29 | 2002-11-21 | Mirkin Chad A. | Movement of biomolecule-coated nanoparticles in an electric field |
| JP4638043B2 (ja) | 1998-12-14 | 2011-02-23 | パシフィック バイオサイエンシーズ オブ カリフォルニア， インコーポレイテッド | ポリメラーゼ合成による、単一分子の核酸の配列決定のためのシステムおよび方法 |
| US6529240B2 (en) | 1999-11-18 | 2003-03-04 | Agilent Technologies, Inc. | Random access memory integrated with CMOS sensors |
| US7238477B2 (en) * | 2001-09-24 | 2007-07-03 | Intel Corporation | Methods to increase nucleotide signals by Raman scattering |
| EP1594987B1 (en) * | 2003-02-21 | 2009-05-27 | GeneForm Technologies Limited | Nucleic acid sequencing methods, kits and reagents |
| US20070077575A1 (en) | 2004-03-05 | 2007-04-05 | Mcallister William T | Use of rna polymerase as an information-dependent molecular motor |
| WO2006028508A2 (en) * | 2004-03-23 | 2006-03-16 | President And Fellows Of Harvard College | Methods and apparatus for characterizing polynucleotides |
| US7556922B2 (en) | 2006-03-23 | 2009-07-07 | The Board Of Trustees Of The Leland Stanford Junior University | Motion resolved molecular sequencing |
| WO2008124107A1 (en) * | 2007-04-04 | 2008-10-16 | The Regents Of The University Of California | Compositions, devices, systems, and methods for using a nanopore |
| WO2008124706A2 (en) * | 2007-04-06 | 2008-10-16 | Arizona Board Of Regents Acting For And On Behalf Of Arizona State University | Devices and methods for target molecule characterization |
| CA2707600C (en) | 2007-12-04 | 2018-02-20 | Pacific Biosciences Of California, Inc. | Alternate labeling strategies for single molecule sequencing |
| US8815576B2 (en) | 2007-12-27 | 2014-08-26 | Lawrence Livermore National Security, Llc. | Chip-based sequencing nucleic acids |
| US8628649B2 (en) * | 2008-03-18 | 2014-01-14 | Arizona Board Of Regents Acting For And On Behalf Of Arizona State University | Nanopore and carbon nanotube based DNA sequencer and a serial recognition sequencer |
| WO2010111691A2 (en) | 2009-03-27 | 2010-09-30 | Life Technologies Corp | Conjugates of biomolecules to nanoparticles |
| US9017937B1 (en) * | 2009-04-10 | 2015-04-28 | Pacific Biosciences Of California, Inc. | Nanopore sequencing using ratiometric impedance |
| WO2011106456A2 (en) * | 2010-02-23 | 2011-09-01 | University Of Washington | Artificial mycolic acid membranes |
| US20140051068A1 (en) * | 2010-09-07 | 2014-02-20 | The Regents Of The University Of California | Control of dna movement in a nanopore at one nucleotide precision by a processive enzyme |
| EP2652153B1 (en) | 2010-12-17 | 2017-07-05 | The Trustees of Columbia University in the City of New York | Dna sequencing by synthesis using modified nucleotides and nanopore detection |
| KR101924665B1 (ko) * | 2011-02-23 | 2018-12-03 | 이브 바이오메디컬, 인크. | 회전-의존성 전사 서열분석 시스템 및 사용 방법 |
| EP3633370B1 (en) | 2011-05-27 | 2024-05-01 | Oxford Nanopore Technologies plc | Method and apparatus for determining the presence, absence or characteristics of an analyte |
| IN2014DN00221A (enExample) * | 2011-07-25 | 2015-06-05 | Oxford Nanopore Tech Ltd | |
| US9164053B2 (en) * | 2011-09-26 | 2015-10-20 | The Regents Of The University Of California | Electronic device for monitoring single molecule dynamics |
| US9279154B2 (en) * | 2011-12-21 | 2016-03-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
| US9116118B2 (en) * | 2012-06-08 | 2015-08-25 | Pacific Biosciences Of California, Inc. | Modified base detection with nanopore sequencing |
| US20140147833A1 (en) * | 2012-11-28 | 2014-05-29 | International Business Machines Corporation | Base recognition based on the conformation change of a motor molecule |
-
2014
- 2014-02-20 JP JP2015558959A patent/JP2016507249A/ja active Pending
- 2014-02-20 CN CN201480022008.6A patent/CN105308062A/zh active Pending
- 2014-02-20 HK HK16109275.9A patent/HK1221227A1/zh unknown
- 2014-02-20 KR KR1020157025411A patent/KR20150119353A/ko not_active Withdrawn
- 2014-02-20 US US14/185,469 patent/US9725763B2/en active Active
- 2014-02-20 WO PCT/US2014/017419 patent/WO2014130686A2/en not_active Ceased
- 2014-02-20 EP EP14754640.2A patent/EP2958927A4/en not_active Withdrawn
- 2014-02-20 RU RU2015139609A patent/RU2015139609A/ru not_active Application Discontinuation
- 2014-02-20 AU AU2014218911A patent/AU2014218911B2/en not_active Ceased
- 2014-02-20 CA CA2900921A patent/CA2900921A1/en not_active Abandoned
-
2017
- 2017-08-02 US US15/666,671 patent/US20180010181A1/en not_active Abandoned
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2808079C2 (ru) * | 2018-12-06 | 2023-11-23 | Эрбер Актиенгезелльшафт | Биомаркер |
Also Published As
| Publication number | Publication date |
|---|---|
| AU2014218911B2 (en) | 2018-07-12 |
| JP2016507249A (ja) | 2016-03-10 |
| WO2014130686A2 (en) | 2014-08-28 |
| CN105308062A (zh) | 2016-02-03 |
| US9725763B2 (en) | 2017-08-08 |
| EP2958927A4 (en) | 2016-09-14 |
| CA2900921A1 (en) | 2014-08-28 |
| EP2958927A2 (en) | 2015-12-30 |
| US20140235462A1 (en) | 2014-08-21 |
| AU2014218911A1 (en) | 2015-08-27 |
| WO2014130686A3 (en) | 2014-10-09 |
| US20180010181A1 (en) | 2018-01-11 |
| HK1221227A1 (zh) | 2017-05-26 |
| KR20150119353A (ko) | 2015-10-23 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| FA92 | Acknowledgement of application withdrawn (lack of supplementary materials submitted) |
Effective date: 20190124 |