JP2016507249A - ナノ構造ベースの核酸配列決定のための方法および組成物 - Google Patents

ナノ構造ベースの核酸配列決定のための方法および組成物 Download PDF

Info

Publication number
JP2016507249A
JP2016507249A JP2015558959A JP2015558959A JP2016507249A JP 2016507249 A JP2016507249 A JP 2016507249A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2016507249 A JP2016507249 A JP 2016507249A
Authority
JP
Japan
Prior art keywords
nucleic acid
acid molecule
target nucleic
sequencing
nanostructure
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2015558959A
Other languages
English (en)
Japanese (ja)
Other versions
JP2016507249A5 (enExample
Inventor
テオフィロス コツェログロ
テオフィロス コツェログロ
ステファーノス パパデメトリオ
ステファーノス パパデメトリオ
Original Assignee
イブ バイオメディカル インコーポレイテッド
イブ バイオメディカル インコーポレイテッド
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by イブ バイオメディカル インコーポレイテッド, イブ バイオメディカル インコーポレイテッド filed Critical イブ バイオメディカル インコーポレイテッド
Publication of JP2016507249A publication Critical patent/JP2016507249A/ja
Publication of JP2016507249A5 publication Critical patent/JP2016507249A5/ja
Pending legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
JP2015558959A 2013-02-20 2014-02-20 ナノ構造ベースの核酸配列決定のための方法および組成物 Pending JP2016507249A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201361766925P 2013-02-20 2013-02-20
US61/766,925 2013-02-20
PCT/US2014/017419 WO2014130686A2 (en) 2013-02-20 2014-02-20 Methods and compositions for nanostructure-based nucleic acid sequencing

Publications (2)

Publication Number Publication Date
JP2016507249A true JP2016507249A (ja) 2016-03-10
JP2016507249A5 JP2016507249A5 (enExample) 2017-03-16

Family

ID=51351616

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2015558959A Pending JP2016507249A (ja) 2013-02-20 2014-02-20 ナノ構造ベースの核酸配列決定のための方法および組成物

Country Status (10)

Country Link
US (2) US9725763B2 (enExample)
EP (1) EP2958927A4 (enExample)
JP (1) JP2016507249A (enExample)
KR (1) KR20150119353A (enExample)
CN (1) CN105308062A (enExample)
AU (1) AU2014218911B2 (enExample)
CA (1) CA2900921A1 (enExample)
HK (1) HK1221227A1 (enExample)
RU (1) RU2015139609A (enExample)
WO (1) WO2014130686A2 (enExample)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3848706B1 (en) 2011-05-27 2023-07-19 Oxford Nanopore Technologies PLC Coupling method
EP2994544B1 (en) 2013-05-06 2019-10-02 Pacific Biosciences Of California, Inc. Real-time electronic sequencing
GB201406155D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
US10337060B2 (en) 2014-04-04 2019-07-02 Oxford Nanopore Technologies Ltd. Method for characterising a double stranded nucleic acid using a nano-pore and anchor molecules at both ends of said nucleic acid
GB201418469D0 (en) 2014-10-17 2014-12-03 Oxford Nanopore Tech Ltd Method
WO2017024017A1 (en) 2015-08-06 2017-02-09 Pacific Biosciences Of California, Inc. Systems and methods for selectively addressing sparsely arranged electronic measurement devices
CN105170209B (zh) * 2015-10-15 2017-05-10 华中科技大学 一种表面图案化修饰的基片及其制备方法
WO2017132586A1 (en) * 2016-01-28 2017-08-03 Roswell Biotechnologies, Inc. Methods and apparatus for measuring analytes using large scale molecular electronics sensor arrays
KR102184637B1 (ko) * 2016-08-04 2020-11-30 연세대학교 원주산학협력단 퀀타매트릭스 어세이 플랫폼 기반 결핵 및 비결핵 항산균의 검출 및 동정과 결핵균의 리팜핀 내성여부를 동시 확인할 수 있는 진단법 및 그 키트
CN106244712B (zh) * 2016-08-31 2019-11-19 北京大学 Dna测序方法
CN110520517A (zh) * 2017-01-19 2019-11-29 罗斯威尔生命技术公司 包括二维层材料的固态测序装置
JP6559814B2 (ja) * 2018-01-26 2019-08-14 株式会社日立ハイテクノロジーズ 生体分子測定方法
EP3987052A4 (en) * 2019-06-18 2023-07-26 Illumina, Inc. ATTACHING POLYMERASE TO A CONDUCTIVE CHANNEL
CN110452817A (zh) * 2019-07-08 2019-11-15 广东工业大学 一种dna测序装置及测序方法
CN111455034B (zh) * 2020-04-09 2024-04-09 苏州罗岛纳米科技有限公司 一种基于固态纳米孔机构的单分子检测方法和系统

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

Family Cites Families (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5693489A (en) 1984-03-30 1997-12-02 Associated Universities, Inc. Cloning and expression of the gene for bacteriophage T7 RNA polymerase
US5795782A (en) * 1995-03-17 1998-08-18 President & Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US20020172953A1 (en) * 1996-07-29 2002-11-21 Mirkin Chad A. Movement of biomolecule-coated nanoparticles in an electric field
WO2000036151A1 (en) 1998-12-14 2000-06-22 Li-Cor, Inc. A heterogeneous assay for pyrophosphate detection
US6529240B2 (en) 1999-11-18 2003-03-04 Agilent Technologies, Inc. Random access memory integrated with CMOS sensors
US7238477B2 (en) * 2001-09-24 2007-07-03 Intel Corporation Methods to increase nucleotide signals by Raman scattering
DE602004021235D1 (de) * 2003-02-21 2009-07-09 Geneform Technologies Ltd Verfahren, kits und reagenzien zur nukleinsäuresequenzierung
US20070077575A1 (en) 2004-03-05 2007-04-05 Mcallister William T Use of rna polymerase as an information-dependent molecular motor
WO2006028508A2 (en) * 2004-03-23 2006-03-16 President And Fellows Of Harvard College Methods and apparatus for characterizing polynucleotides
US7556922B2 (en) * 2006-03-23 2009-07-07 The Board Of Trustees Of The Leland Stanford Junior University Motion resolved molecular sequencing
US8500982B2 (en) * 2007-04-04 2013-08-06 The Regents Of The University Of California Compositions, devices, systems, and methods for using a nanopore
US9395352B2 (en) * 2007-04-06 2016-07-19 Arizona Board Of Regents On Behalf Of Arizona State University Devices and methods for target molecule characterization
US20090208957A1 (en) 2007-12-04 2009-08-20 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
US8815576B2 (en) 2007-12-27 2014-08-26 Lawrence Livermore National Security, Llc. Chip-based sequencing nucleic acids
WO2009117522A2 (en) * 2008-03-18 2009-09-24 Reinhart, Kevin Nanopore and carbon nanotube based dna sequencer and a serial recognition sequencer
US20100255487A1 (en) * 2009-03-27 2010-10-07 Life Technologies Corporation Methods and apparatus for single molecule sequencing using energy transfer detection
US9017937B1 (en) * 2009-04-10 2015-04-28 Pacific Biosciences Of California, Inc. Nanopore sequencing using ratiometric impedance
ES2892158T3 (es) * 2010-02-23 2022-02-02 Univ Washington Membranas artificiales de ácidos micólicos
CN103392008B (zh) * 2010-09-07 2017-10-20 加利福尼亚大学董事会 通过持续性酶以一个核苷酸的精度控制dna在纳米孔中的移动
WO2012116191A1 (en) * 2011-02-23 2012-08-30 Eve Biomedical, Inc. Rotation-dependent transcriptional sequencing systems and methods of using
BR112014001699A2 (pt) * 2011-07-25 2017-06-13 Oxford Nanopore Tech Ltd método para sequenciar de um polinucleotídeo alvo de filamento duplo, kit, métodos para preparar um polinucleotídeo alvo de filamento duplo para sequenciamento e para sequenciar um polinucleotídeo alvo de filamento duplo, e, aparelho
US9164053B2 (en) * 2011-09-26 2015-10-20 The Regents Of The University Of California Electronic device for monitoring single molecule dynamics
US9279154B2 (en) * 2011-12-21 2016-03-08 Illumina, Inc. Apparatus and methods for kinetic analysis and determination of nucleic acid sequences
GB2557509A (en) * 2012-06-08 2018-06-20 Pacific Biosciences California Inc Modified base detection with nanopore sequencing
US20140147833A1 (en) * 2012-11-28 2014-05-29 International Business Machines Corporation Base recognition based on the conformation change of a motor molecule

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

Also Published As

Publication number Publication date
HK1221227A1 (zh) 2017-05-26
AU2014218911A1 (en) 2015-08-27
US20180010181A1 (en) 2018-01-11
WO2014130686A3 (en) 2014-10-09
CA2900921A1 (en) 2014-08-28
AU2014218911B2 (en) 2018-07-12
RU2015139609A (ru) 2017-03-24
WO2014130686A2 (en) 2014-08-28
CN105308062A (zh) 2016-02-03
EP2958927A2 (en) 2015-12-30
US9725763B2 (en) 2017-08-08
US20140235462A1 (en) 2014-08-21
EP2958927A4 (en) 2016-09-14
KR20150119353A (ko) 2015-10-23

Similar Documents

Publication Publication Date Title
AU2014218911B2 (en) Methods and compositions for nanostructure-based nucleic acid sequencing
US12509721B2 (en) Methods and systems for characterizing analytes using nanopores
JP6018092B2 (ja) 回転依存転写配列決定システムおよび使用方法
EP3802877B1 (en) Method
CN109312401B (zh) 连接的核酸的纳米孔测序方法
CN105705656B (zh) 方法
CN116323974A (zh) 多路复用covid-19锁式测定
CN113981055A (zh) 纳米孔rna表征方法
JP2017503517A (ja) 1つまたは複数のポリヌクレオチド結合タンパク質を標的ポリヌクレオチドに付着させる方法
CN116334198A (zh) 分析物的测定和表征方法及试剂盒
CN109196116A (zh) 方法
JP2015516814A (ja) 標的化されたdnaの濃縮および配列決定
JP2022513574A (ja) ポリヌクレオチドを配列決定する方法
HK40096585A (zh) 多路复用covid-19锁式测定
HK40055932B (zh) 一种基於自发光的单通道测序方法

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20151023

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20170203

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20170203

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20180129

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20180423

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20180912

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20181211

A02 Decision of refusal

Free format text: JAPANESE INTERMEDIATE CODE: A02

Effective date: 20190508