RU2013115928A - Ингибиторы ezh2 человека и способы их применения - Google Patents
Ингибиторы ezh2 человека и способы их применения Download PDFInfo
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Abstract
1. Способ, включающийa) получение образца ткани от индивидуума;b) выявление уровня диметилирования (me2) H3-K27, если оно присутствует в указанном образце ткани, и сравнение указанного уровня диметилирования (me2) с контрольным уровнем диметилирования (me2);c) необязательно выявление уровня триметилирования (me3) H3-K27, если оно присутствует в указанном образце ткани, и сравнение указанного уровня триметилирования (me3) с контрольным уровнем триметилирования (me3),где указанный индивидуум является отвечающим на ингибитор EZH2, когда указанный уровень диметилирования (me2) отсутствует или ниже указанного контрольного уровня диметилирования (me2), или когда указанный уровень триметилирования (me3) является таким же или более высоким, чем указанный контрольный уровень триметилирования (me3), и указанный уровень диметилирования (me2) отсутствует или ниже указанного контрольного уровня диметилирования (me2).2. Способ по п.1, дополнительно включающийd) получение соотношения уровня диметилирования (me2) и уровня триметилирования (me3) H3-K27 в указанном образце ткани для получения тестируемого соотношения, и сравнение тестируемого соотношения с контрольным соотношением;где указанный индивидуум является отвечающим на ингибитор EZH2, когда указанное тестируемое соотношение является более низким, чем указанное контрольное соотношение.3. Способ по п.1, где указанный индивидуум имеет рак.4. Способ по п.1, где указанное выявление проводят с помощью анализа, выбранного из анализа с использованием вестерн-блоттинга, иммуногистохимии (IHC), иммунофлуоресценции (IF) и масс-спектрометрии (МС).5. Способ по п.1, где указанное выявление включает приведение в контакт ука�
Claims (30)
1. Способ, включающий
a) получение образца ткани от индивидуума;
b) выявление уровня диметилирования (me2) H3-K27, если оно присутствует в указанном образце ткани, и сравнение указанного уровня диметилирования (me2) с контрольным уровнем диметилирования (me2);
c) необязательно выявление уровня триметилирования (me3) H3-K27, если оно присутствует в указанном образце ткани, и сравнение указанного уровня триметилирования (me3) с контрольным уровнем триметилирования (me3),
где указанный индивидуум является отвечающим на ингибитор EZH2, когда указанный уровень диметилирования (me2) отсутствует или ниже указанного контрольного уровня диметилирования (me2), или когда указанный уровень триметилирования (me3) является таким же или более высоким, чем указанный контрольный уровень триметилирования (me3), и указанный уровень диметилирования (me2) отсутствует или ниже указанного контрольного уровня диметилирования (me2).
2. Способ по п.1, дополнительно включающий
d) получение соотношения уровня диметилирования (me2) и уровня триметилирования (me3) H3-K27 в указанном образце ткани для получения тестируемого соотношения, и сравнение тестируемого соотношения с контрольным соотношением;
где указанный индивидуум является отвечающим на ингибитор EZH2, когда указанное тестируемое соотношение является более низким, чем указанное контрольное соотношение.
3. Способ по п.1, где указанный индивидуум имеет рак.
4. Способ по п.1, где указанное выявление проводят с помощью анализа, выбранного из анализа с использованием вестерн-блоттинга, иммуногистохимии (IHC), иммунофлуоресценции (IF) и масс-спектрометрии (МС).
5. Способ по п.1, где указанное выявление включает приведение в контакт указанного образца ткани со средством, которое специфично связывается с диметилированным H3-K27 и/или триметилированным H3-K27.
6. Способ по п.5, где указанное средство представляет собой антитело, полипептид, аптамер или их фрагмент.
7. Способ лечения рака у индивидуума, нуждающегося в этом, включающий введение индивидууму, который был определен как отвечающий на ингибитор EZH2, способом по любому из предшествующих пунктов.
8. Способ по п.3, где указанный рак выбран из фолликулярной лимфомы и диффузной крупно-B-клеточной лимфомы (DLBCL).
9. Способ по п.1, где у указанного индивидуума экспрессируется мутантный по Y641 полипептид EZH2.
10. Способ по п.9, где указанный мутант по Y641 выбран из Y641F, Y641H, Y641N и Y641S.
11. Способ, включающий введение индивидууму, у которого экспрессируется мутант по Y641 полипептида EZH2, терапевтически эффективного количества ингибитора EZH2.
12. Способ, включающий приведение в контакт клетки, экспрессирующей мутант полипептида EZH2 по Y641, с эффективным количеством ингибитора EZH2.
13. Способ, включающий выявление мутанта полипептида EZH2 по Y641, если он присутствует в образце от индивидуума; где присутствие мутанта Y641 указывает на то, что индивидуум является кандидатом для лечения ингибитором EZH2.
14. Способ по п.11, где ингибитор ингибирует активность метилтрансферазы гистонов мутанта полипептида EZH2 по Y641.
15. Способ по п.14, где ингибирование представляет собой селективное ингибирование.
16. Способ по п.11, где мутант полипептида EZH2 по Y641 имеет мутацию, выбранную из группы, состоящей из Y641F, Y641H, Y641N и Y641S.
17. Способ по п.16, где указанное выявление мутанта EZH2 по Y641 проводят:
a. полногеномным ресеквенированием,
b. ресеквенированием области-мишени, которое выявляет нуклеиновую кислоту, кодирующую мутант полипептида EZH2 по Y641,
c. антителом, которое специфично связывается с полипептидом или его фрагментом, характерным для мутанта полипептида EZH2 по Y641; или
d. зондом нуклеиновой кислоты, который гибридизуется с нуклеиновой кислотой, кодирующей полипептид или его фрагмент, характерный для мутанта полипептида EZH2 по Y641.
18. Способ по п.11, где индивидуум имеет рак.
19. Способ по п.18, где рак выбран из группы, состоящей из фолликулярной лимфомы и диффузной крупно-B-клеточной лимфомы (DLBCL).
22. Фармацевтическая композиция, содержащая соединение по п.21.
24. Способ, включающий
комбинирование выделенного мутанта полипептида EZH2 по Y641 с гистонным субстратом, донором метильных групп и тестируемым соединением, где гистонный субстрат содержит форму H3-K27, выбранную из группы, состоящей из неметилированного H3-K27, монометилированного H3-K27, диметилированного H3-K27 и любой их комбинации, с образованием тестируемой смеси; и
выявление метилирования H3-K27 в гистонном субстрате, тем самым идентифицируя тестируемое соединение в качестве ингибитора мутанта EZH2 по Y641, когда метилирование H3-K27 в присутствии тестируемого соединения является меньшим, чем метилирование H3-K27 в отсутствие тестируемого соединения.
25. Способ по п.24, дополнительно включающий
выявление образования триметилированного H3-K27 в гистонном субстрате, тем самым идентифицируя тестируемое соединение в качестве ингибитора мутанта EZH2 по Y641, когда образование триметилированного H3-K27 в присутствии тестируемого соединения является меньшим, чем образование триметилированного H3-K27 в отсутствие тестируемого соединения.
26. Способ по п.25, дополнительно включающий
комбинирование выделенного EZH2 дикого типа с гистонным субстратом, донором метильных групп и тестируемым соединением, где гистонный субстрат содержит форму H3-K27, выбранную из группы, состоящей из монометилированного H3-K27, диметилированного H3-K27 и комбинации монометилированного H3-K27 и диметилированного H3-K27, тем самым получая контрольную смесь;
выявление триметилирования гистонного субстрата в каждой из тестируемой смеси и контрольной смеси;
вычисление соотношения (a) триметилирования с мутантом EZH2 по Y641 и тестируемым соединением (M+) и (b) триметилирования с мутантом EZH2 по Y641 без тестируемого соединения (M-);
вычисление соотношения (c) триметилирования с EZH2 дикого типа и тестируемым соединением (WT+) и (d) триметилирования с EZH2 дикого типа без тестируемого соединения (WT-);
сравнение соотношения (a)/(b) с соотношением (c)/(d); и
идентификацию тестируемого соединения в качестве селективного ингибитора мутанта EZH2 по Y641, когда соотношение (a)/(b) является меньшим, чем соотношение (c)/(d).
27. Способ по п.24, где мутант полипептида EZH2 по Y641 имеет мутацию, выбранную из группы, состоящей из Y641F, Y641H, Y641N и Y641S.
28. Способ по любому из пп.24-27, где указанное выявление включает измерение включения меченных метильных групп.
29. Способ по п.28, где меченные метильные группы представляют собой изотопно меченные метильные группы.
30. Способ по любому из пп.24-26, где указанное выявление включает приведение в контакт гистонного субстрата с антителом, которое специфично связывается с триметилированным H3-K27.
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