JP6674738B2 - Dnaコードライブラリーをタグ付けするための方法 - Google Patents
Dnaコードライブラリーをタグ付けするための方法 Download PDFInfo
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- JP6674738B2 JP6674738B2 JP2014529907A JP2014529907A JP6674738B2 JP 6674738 B2 JP6674738 B2 JP 6674738B2 JP 2014529907 A JP2014529907 A JP 2014529907A JP 2014529907 A JP2014529907 A JP 2014529907A JP 6674738 B2 JP6674738 B2 JP 6674738B2
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- Prior art keywords
- nucleotides
- tag
- headpiece
- building block
- ligation
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- 0 CC(C)*(C(C)C)(C(C)C)C#CCOC(C1OC(CCC(N*(C)*)=O)=O)[C@](COC(c2ccccc2)(c(cc2)ccc2OC)c(cc2)ccc2OC)O[C@]1N(C=CC(N1)=*)C1=O Chemical compound CC(C)*(C(C)C)(C(C)C)C#CCOC(C1OC(CCC(N*(C)*)=O)=O)[C@](COC(c2ccccc2)(c(cc2)ccc2OC)c(cc2)ccc2OC)O[C@]1N(C=CC(N1)=*)C1=O 0.000 description 1
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1068—Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
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- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/14—Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support
- C40B50/16—Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support involving encoding steps
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07B—GENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
- C07B2200/00—Indexing scheme relating to specific properties of organic compounds
- C07B2200/11—Compounds covalently bound to a solid support
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- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Wood Science & Technology (AREA)
- Biomedical Technology (AREA)
- Zoology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Biochemistry (AREA)
- Plant Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Microbiology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Bioinformatics & Computational Biology (AREA)
- Structural Engineering (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Medicinal Chemistry (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
- Polysaccharides And Polysaccharide Derivatives (AREA)
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
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US201161531820P | 2011-09-07 | 2011-09-07 | |
US61/531,820 | 2011-09-07 | ||
US201161536929P | 2011-09-20 | 2011-09-20 | |
US61/536,929 | 2011-09-20 | ||
PCT/US2012/054228 WO2013036810A1 (en) | 2011-09-07 | 2012-09-07 | Methods for tagging dna-encoded libraries |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
JP2018089600A Division JP6703034B2 (ja) | 2011-09-07 | 2018-05-08 | Dnaコードライブラリーをタグ付けするための方法 |
Publications (2)
Publication Number | Publication Date |
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JP2014528713A JP2014528713A (ja) | 2014-10-30 |
JP6674738B2 true JP6674738B2 (ja) | 2020-04-01 |
Family
ID=47832597
Family Applications (3)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
JP2014529907A Expired - Fee Related JP6674738B2 (ja) | 2011-09-07 | 2012-09-07 | Dnaコードライブラリーをタグ付けするための方法 |
JP2018089600A Expired - Fee Related JP6703034B2 (ja) | 2011-09-07 | 2018-05-08 | Dnaコードライブラリーをタグ付けするための方法 |
JP2020081691A Pending JP2020176121A (ja) | 2011-09-07 | 2020-05-07 | Dnaコードライブラリーをタグ付けするための方法 |
Family Applications After (2)
Application Number | Title | Priority Date | Filing Date |
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JP2018089600A Expired - Fee Related JP6703034B2 (ja) | 2011-09-07 | 2018-05-08 | Dnaコードライブラリーをタグ付けするための方法 |
JP2020081691A Pending JP2020176121A (ja) | 2011-09-07 | 2020-05-07 | Dnaコードライブラリーをタグ付けするための方法 |
Country Status (17)
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EP2619329B1 (en) | 2010-09-24 | 2019-05-22 | The Board of Trustees of The Leland Stanford Junior University | Direct capture, amplification and sequencing of target dna using immobilized primers |
MX360438B (es) * | 2011-09-07 | 2018-11-01 | X Chem Inc | Metodos para etiquetar bibliotecas codificadas por adn. |
EP3851529A1 (en) | 2012-07-13 | 2021-07-21 | X-Chem, Inc. | Dna-encoded libraries having encoding oligonucleotide linkages not readable by polymerases |
EP2928914A1 (en) | 2012-12-10 | 2015-10-14 | Fred Hutchinson Cancer Research Center | Methods for screening |
CN103882532B (zh) * | 2012-12-20 | 2015-10-21 | 成都先导药物开发有限公司 | 一种先导化合物的合成及筛选方法与试剂盒 |
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GB201404552D0 (en) * | 2014-03-14 | 2014-04-30 | Philochem Ag | Purification of dna-conjugate products |
US10900065B2 (en) | 2014-11-14 | 2021-01-26 | University Of Washington | Methods and kits for labeling cellular molecules |
MA41298A (fr) * | 2014-12-30 | 2017-11-07 | X Chem Inc | Procédés de marquage de banques codées par de l'adn |
CN104894651B (zh) * | 2015-06-29 | 2017-04-12 | 天津诺禾医学检验所有限公司 | 微量起始dna的高通量测序文库构建方法及其所构建的高通量测序文库 |
EP3472376A4 (en) * | 2016-06-16 | 2019-12-18 | Richard Edward Watts | OLIGONUCLEOTIDE CONTROLLED AND RECORDED COMBINATORY SYNTHESIS OF CODED PROBE MOLECULES |
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WO2018107093A1 (en) * | 2016-12-09 | 2018-06-14 | University Of Southern California | Genome-wide mapping of dna-dna proximities in the nucleus |
EP3360962A1 (en) * | 2017-02-14 | 2018-08-15 | Technische Universität Dortmund | Synthesis of dna-encoded libraries by micellar catalysis |
US20200149034A1 (en) | 2017-03-17 | 2020-05-14 | Hitgen Ltd. | Methods and Compositions for Synthesis of Encoded Libraries |
WO2018204420A1 (en) * | 2017-05-02 | 2018-11-08 | Haystack Sciences Corporation | Molecules for verifying oligonucleotide directed combinatorial synthesis and methods of making and using the same |
US20210404007A1 (en) * | 2017-06-30 | 2021-12-30 | The Regents Of The University Of California | Methods and systems for evaluating dna methylation in cell-free dna |
US20200263163A1 (en) * | 2017-09-25 | 2020-08-20 | Haystack Sciences Corporation | Multinomial encoding for oligonucleotide-directed combinatorial chemistry |
CN108070009B (zh) * | 2017-12-12 | 2021-04-13 | 上海药明康德新药开发有限公司 | 一种制备dna编码化合物文库的方法及起始头片段化合物和制得的dna编码化合物 |
EP3737755B1 (en) * | 2018-01-12 | 2024-08-28 | Camena Bioscience Limited | Method for template-free geometric enzymatic nucleic acid synthesis |
WO2019149198A1 (zh) * | 2018-01-31 | 2019-08-08 | 成都先导药物开发股份有限公司 | 一种dna编码化合物库及化合物筛选方法 |
WO2019157692A1 (zh) * | 2018-02-14 | 2019-08-22 | 深圳劲宇生物科技有限公司 | Dna 编码分子库及无靶点限制的化合物筛选方法 |
WO2019157693A1 (zh) * | 2018-02-14 | 2019-08-22 | 深圳劲宇生物科技有限公司 | Dna编码分子库及应用广的化合物筛选方法 |
CN112166199B (zh) | 2018-04-02 | 2025-04-29 | 埃努梅拉分子股份有限公司 | 用于对核酸分子进行计数的方法、系统和组合物 |
CN110658163A (zh) * | 2018-06-29 | 2020-01-07 | 成都先导药物开发股份有限公司 | 一种合成dna编码化合物中的反应监测方法 |
CN109468310B (zh) * | 2018-10-25 | 2020-12-01 | 深圳劲宇生物科技有限公司 | Dna编码碎片分子库的合成方法和连接基团的筛选方法 |
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CN113439085B (zh) * | 2019-02-18 | 2025-06-27 | 味之素株式会社 | 包含互补部分的修饰寡核苷酸的制造方法 |
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