JP6096672B2 - 検出体、プローブ、および阻害剤を用いた核酸標的検出 - Google Patents

検出体、プローブ、および阻害剤を用いた核酸標的検出 Download PDF

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JP6096672B2
JP6096672B2 JP2013543299A JP2013543299A JP6096672B2 JP 6096672 B2 JP6096672 B2 JP 6096672B2 JP 2013543299 A JP2013543299 A JP 2013543299A JP 2013543299 A JP2013543299 A JP 2013543299A JP 6096672 B2 JP6096672 B2 JP 6096672B2
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nucleic acid
inhibitor
target nucleic
fluorophore
detector
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JP2014500729A5 (enExample
JP2014500729A (ja
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ラズ，タル
メアリー，パスカリーヌ
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ヌビオ，インコーポレイテッド
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    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C12Q1/6818—Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6804—Nucleic acid analysis using immunogens
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6486—Measuring fluorescence of biological material, e.g. DNA, RNA, cells
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
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  • Proteomics, Peptides & Aminoacids (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
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  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Pathology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • General Physics & Mathematics (AREA)
  • Biomedical Technology (AREA)
  • Optics & Photonics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Dispersion Chemistry (AREA)
JP2013543299A 2010-12-07 2011-12-07 検出体、プローブ、および阻害剤を用いた核酸標的検出 Expired - Fee Related JP6096672B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US42074710P 2010-12-07 2010-12-07
US61/420,747 2010-12-07
PCT/US2011/063654 WO2012078710A1 (en) 2010-12-07 2011-12-07 Nucleic acid target detection using a detector, a probe and an inhibitor

Publications (3)

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JP2014500729A JP2014500729A (ja) 2014-01-16
JP2014500729A5 JP2014500729A5 (enExample) 2015-01-29
JP6096672B2 true JP6096672B2 (ja) 2017-03-15

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US (2) US9581549B2 (enExample)
EP (1) EP2649202B1 (enExample)
JP (1) JP6096672B2 (enExample)
CN (2) CN103348017B (enExample)
AU (1) AU2011338502B2 (enExample)
CA (1) CA2820094C (enExample)
SG (1) SG191725A1 (enExample)
WO (1) WO2012078710A1 (enExample)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP6096672B2 (ja) 2010-12-07 2017-03-15 ヌビオ，インコーポレイテッド 検出体、プローブ、および阻害剤を用いた核酸標的検出
SG193436A1 (en) 2011-03-30 2013-10-30 Gnubio Inc Injection of multiple volumes into or out of droplets
EP3056573B1 (en) 2011-03-31 2018-09-26 Bio-Rad Laboratories, Inc. Managing variation in spectroscopic intensity measurements through the use of a reference component
JP5986623B2 (ja) 2011-03-31 2016-09-06 ヌビオ，インコーポレイテッド スケーラブルなスペクトル検出および計測
CN104781386B (zh) 2012-09-12 2018-04-06 基纽拜奥股份有限公司 用于进行试验的集成微流体系统、方法和试剂盒
WO2014117088A1 (en) 2013-01-25 2014-07-31 Gnubio, Inc. System and method for performing droplet inflation
US20160076082A1 (en) 2013-04-26 2016-03-17 Gnubio, Inc. A method for blocking polymerase extension of 3 prime dna ends by stem-loop structure
EP3004813A4 (en) 2013-05-29 2016-12-21 Gnubio Inc COST-EFFECTIVE OPTICAL DISCRETE HIGH-SPEED MEASURING SYSTEM
CN105431553B (zh) * 2013-05-29 2020-02-07 生物辐射实验室股份有限公司 用于在基于乳液的微流体中测序的系统和方法
CN105765055A (zh) 2013-08-27 2016-07-13 基纽拜奥股份有限公司 微流体装置和其使用方法
WO2015048798A1 (en) 2013-09-30 2015-04-02 Gnubio, Inc. Microfluidic cartridge device and methods of use and assembly
WO2015081102A1 (en) 2013-11-27 2015-06-04 Gnubio, Inc. Microfluidic droplet packing
EP3160649B1 (en) 2014-06-30 2019-12-11 Bio-Rad Laboratories, Inc. Floating thermal contact enabled pcr
US11118217B2 (en) 2017-01-30 2021-09-14 Bio-Rad Laboratories, Inc. Emulsion compositions and methods of their use
WO2018175399A1 (en) 2017-03-24 2018-09-27 Bio-Rad Laboratories, Inc. Universal hairpin primers

Family Cites Families (40)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5538848A (en) * 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
US6007994A (en) * 1995-12-22 1999-12-28 Yale University Multiparametric fluorescence in situ hybridization
US6235502B1 (en) * 1998-09-18 2001-05-22 Molecular Staging Inc. Methods for selectively isolating DNA using rolling circle amplification
US20030148303A1 (en) * 2000-09-19 2003-08-07 Nadeau James G. Universal probes and methods for detection of nucleic acids
JP4537053B2 (ja) * 2001-06-25 2010-09-01 ジョージア テック リサーチ コーポレーション 二重共鳴エネルギー転移核酸プローブ
CN1842368B (zh) 2003-08-27 2014-05-28 哈佛大学 流体物种的电子控制
WO2007081385A2 (en) 2006-01-11 2007-07-19 Raindance Technologies, Inc. Microfluidic devices and methods of use in the formation and control of nanoreactors
WO2007133710A2 (en) 2006-05-11 2007-11-22 Raindance Technologies, Inc. Microfluidic devices and methods of use thereof
WO2008021446A2 (en) * 2006-08-15 2008-02-21 Genetag Technology, Inc. Probe-antiprobe compositions and methods for dna or rna detection
US8568979B2 (en) * 2006-10-10 2013-10-29 Illumina, Inc. Compositions and methods for representational selection of nucleic acids from complex mixtures using hybridization
US20100129792A1 (en) 2007-02-06 2010-05-27 Gerassimos Makrigiorgos Direct monitoring and pcr amplification of the dosage and dosage difference between target genetic regions
JP2010528619A (ja) * 2007-05-31 2010-08-26 ベクトン・ディキンソン・アンド・カンパニー インフルエンザａおよびインフルエンザｂウイルスを検出するための配列および方法
JP5738597B2 (ja) 2007-12-21 2015-06-24 プレジデント アンド フェローズ オブ ハーバード カレッジ 核酸の配列決定のためのシステムおよび方法
CN105344389B (zh) 2008-05-16 2018-01-02 哈佛大学 微流体系统、方法和装置
US20110218123A1 (en) 2008-09-19 2011-09-08 President And Fellows Of Harvard College Creation of libraries of droplets and related species
EP3290531B1 (en) 2008-12-19 2019-07-24 President and Fellows of Harvard College Particle-assisted nucleic acid sequencing
WO2010111231A1 (en) 2009-03-23 2010-09-30 Raindance Technologies, Inc. Manipulation of microfluidic droplets
JP5687414B2 (ja) * 2009-04-20 2015-03-18 オリンパス株式会社 多型の識別方法
CA2766795C (en) 2009-06-26 2017-10-03 President And Fellows Of Harvard College Fluid injection
EP2493619B1 (en) 2009-10-27 2018-12-19 President and Fellows of Harvard College Droplet creation techniques
EP4435111A1 (en) 2010-02-12 2024-09-25 Bio-Rad Laboratories, Inc. Digital analyte analysis
JP6096672B2 (ja) 2010-12-07 2017-03-15 ヌビオ，インコーポレイテッド 検出体、プローブ、および阻害剤を用いた核酸標的検出
EP3859011A1 (en) 2011-02-11 2021-08-04 Bio-Rad Laboratories, Inc. Methods for forming mixed droplets
WO2012112804A1 (en) 2011-02-18 2012-08-23 Raindance Technoligies, Inc. Compositions and methods for molecular labeling
SG193436A1 (en) 2011-03-30 2013-10-30 Gnubio Inc Injection of multiple volumes into or out of droplets
EP3056573B1 (en) 2011-03-31 2018-09-26 Bio-Rad Laboratories, Inc. Managing variation in spectroscopic intensity measurements through the use of a reference component
JP5986623B2 (ja) 2011-03-31 2016-09-06 ヌビオ，インコーポレイテッド スケーラブルなスペクトル検出および計測
US8841071B2 (en) 2011-06-02 2014-09-23 Raindance Technologies, Inc. Sample multiplexing
EP2760578B1 (en) 2011-09-28 2020-08-26 President and Fellows of Harvard College Systems and methods for droplet production and/or fluidic manipulation
WO2013122826A1 (en) 2012-02-14 2013-08-22 Gnubio, Inc. Cascaded addition of target specific universal adapters to nucleic acids
WO2013165748A1 (en) 2012-04-30 2013-11-07 Raindance Technologies, Inc Digital analyte analysis
CN104781386B (zh) 2012-09-12 2018-04-06 基纽拜奥股份有限公司 用于进行试验的集成微流体系统、方法和试剂盒
US20150321163A1 (en) 2012-12-14 2015-11-12 Gnubio, Inc. Method for maintaining heterogeneous concentrations of molecules in emulsion droplets
WO2014117088A1 (en) 2013-01-25 2014-07-31 Gnubio, Inc. System and method for performing droplet inflation
US20160076082A1 (en) 2013-04-26 2016-03-17 Gnubio, Inc. A method for blocking polymerase extension of 3 prime dna ends by stem-loop structure
EP3004813A4 (en) 2013-05-29 2016-12-21 Gnubio Inc COST-EFFECTIVE OPTICAL DISCRETE HIGH-SPEED MEASURING SYSTEM
CN105431553B (zh) 2013-05-29 2020-02-07 生物辐射实验室股份有限公司 用于在基于乳液的微流体中测序的系统和方法
CN105765055A (zh) 2013-08-27 2016-07-13 基纽拜奥股份有限公司 微流体装置和其使用方法
WO2015048798A1 (en) 2013-09-30 2015-04-02 Gnubio, Inc. Microfluidic cartridge device and methods of use and assembly
EP3160649B1 (en) 2014-06-30 2019-12-11 Bio-Rad Laboratories, Inc. Floating thermal contact enabled pcr

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WO2012078710A1 (en) 2012-06-14
AU2011338502B2 (en) 2016-08-11
US20170226568A1 (en) 2017-08-10
CA2820094C (en) 2019-02-26
CN105603071A (zh) 2016-05-25
CN105603071B (zh) 2019-06-21
JP2014500729A (ja) 2014-01-16
US10533212B2 (en) 2020-01-14
CA2820094A1 (en) 2012-06-14
EP2649202B1 (en) 2019-02-20
CN103348017B (zh) 2016-01-20
US9581549B2 (en) 2017-02-28
SG191725A1 (en) 2013-08-30
US20130344485A1 (en) 2013-12-26
EP2649202A4 (en) 2015-05-27
AU2011338502A1 (en) 2013-06-13
CN103348017A (zh) 2013-10-09
EP2649202A1 (en) 2013-10-16

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