JP2006500010A5 - - Google Patents
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- JP2006500010A5 JP2006500010A5 JP2004522470A JP2004522470A JP2006500010A5 JP 2006500010 A5 JP2006500010 A5 JP 2006500010A5 JP 2004522470 A JP2004522470 A JP 2004522470A JP 2004522470 A JP2004522470 A JP 2004522470A JP 2006500010 A5 JP2006500010 A5 JP 2006500010A5
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- Prior art keywords
- oligonucleotide
- oligonucleotides
- iii
- group
- matches
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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- 108091034117 Oligonucleotide Proteins 0.000 claims description 165
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 claims description 51
- 244000005700 microbiome Species 0.000 claims description 41
- 238000000034 method Methods 0.000 claims description 30
- 241000894006 Bacteria Species 0.000 claims description 18
- 230000000295 complement effect Effects 0.000 claims description 16
- 238000009396 hybridization Methods 0.000 claims description 11
- 239000003550 marker Substances 0.000 claims description 8
- 241000186216 Corynebacterium Species 0.000 claims description 7
- 241000191940 Staphylococcus Species 0.000 claims description 5
- 102000003992 Peroxidases Human genes 0.000 claims description 3
- 238000007901 in situ hybridization Methods 0.000 claims description 3
- 108040007629 peroxidase activity proteins Proteins 0.000 claims description 3
- 239000013641 positive control Substances 0.000 claims description 3
- 238000005406 washing Methods 0.000 claims description 3
- 102000002260 Alkaline Phosphatase Human genes 0.000 claims description 2
- 108020004774 Alkaline Phosphatase Proteins 0.000 claims description 2
- 239000003153 chemical reaction reagent Substances 0.000 claims description 2
- 235000013305 food Nutrition 0.000 claims description 2
- 239000000203 mixture Substances 0.000 claims description 2
- 239000000126 substance Substances 0.000 claims description 2
- 238000012360 testing method Methods 0.000 claims description 2
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims 4
- 241000555676 Malassezia Species 0.000 claims 4
- 241000191992 Peptostreptococcus Species 0.000 claims 4
- 241000204388 Sporomusa Species 0.000 claims 4
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 claims 3
- 239000002773 nucleotide Substances 0.000 claims 3
- 125000003729 nucleotide group Chemical group 0.000 claims 3
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 claims 2
- 241000186427 Cutibacterium acnes Species 0.000 claims 2
- 108090000790 Enzymes Proteins 0.000 claims 2
- 102000004190 Enzymes Human genes 0.000 claims 2
- 241000233866 Fungi Species 0.000 claims 2
- 241000186429 Propionibacterium Species 0.000 claims 2
- 229940088598 enzyme Drugs 0.000 claims 2
- 108010067770 Endopeptidase K Proteins 0.000 claims 1
- 101000925662 Enterobacteria phage PRD1 Endolysin Proteins 0.000 claims 1
- SXRSQZLOMIGNAQ-UHFFFAOYSA-N Glutaraldehyde Chemical compound O=CCCCC=O SXRSQZLOMIGNAQ-UHFFFAOYSA-N 0.000 claims 1
- 108010001336 Horseradish Peroxidase Proteins 0.000 claims 1
- 108090000988 Lysostaphin Proteins 0.000 claims 1
- 108010014251 Muramidase Proteins 0.000 claims 1
- 102000016943 Muramidase Human genes 0.000 claims 1
- 108010062010 N-Acetylmuramoyl-L-alanine Amidase Proteins 0.000 claims 1
- 229930040373 Paraformaldehyde Natural products 0.000 claims 1
- 102000045595 Phosphoprotein Phosphatases Human genes 0.000 claims 1
- 108700019535 Phosphoprotein Phosphatases Proteins 0.000 claims 1
- 108010059712 Pronase Proteins 0.000 claims 1
- 239000003570 air Substances 0.000 claims 1
- 230000015556 catabolic process Effects 0.000 claims 1
- 210000002421 cell wall Anatomy 0.000 claims 1
- 239000012141 concentrate Substances 0.000 claims 1
- 239000002537 cosmetic Substances 0.000 claims 1
- 239000003431 cross linking reagent Substances 0.000 claims 1
- 238000006731 degradation reaction Methods 0.000 claims 1
- 239000000834 fixative Substances 0.000 claims 1
- 230000003100 immobilizing effect Effects 0.000 claims 1
- 239000007788 liquid Substances 0.000 claims 1
- 229960000274 lysozyme Drugs 0.000 claims 1
- 239000004325 lysozyme Substances 0.000 claims 1
- 235000010335 lysozyme Nutrition 0.000 claims 1
- WSFSSNUMVMOOMR-NJFSPNSNSA-N methanone Chemical compound O=[14CH2] WSFSSNUMVMOOMR-NJFSPNSNSA-N 0.000 claims 1
- 108010009719 mutanolysin Proteins 0.000 claims 1
- 239000013642 negative control Substances 0.000 claims 1
- 108020004707 nucleic acids Proteins 0.000 claims 1
- 150000007523 nucleic acids Chemical class 0.000 claims 1
- 102000039446 nucleic acids Human genes 0.000 claims 1
- 229920002866 paraformaldehyde Polymers 0.000 claims 1
- 230000008823 permeabilization Effects 0.000 claims 1
- 230000002285 radioactive effect Effects 0.000 claims 1
- 239000010865 sewage Substances 0.000 claims 1
- 239000002689 soil Substances 0.000 claims 1
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims 1
- 239000000523 sample Substances 0.000 description 20
- 230000000813 microbial effect Effects 0.000 description 5
- 241000894007 species Species 0.000 description 5
- 210000004027 cell Anatomy 0.000 description 4
- 238000001514 detection method Methods 0.000 description 4
- 238000005070 sampling Methods 0.000 description 4
- 230000001580 bacterial effect Effects 0.000 description 3
- 230000007613 environmental effect Effects 0.000 description 3
- BZTDTCNHAFUJOG-UHFFFAOYSA-N 6-carboxyfluorescein Chemical compound C12=CC=C(O)C=C2OC2=CC(O)=CC=C2C11OC(=O)C2=CC=C(C(=O)O)C=C21 BZTDTCNHAFUJOG-UHFFFAOYSA-N 0.000 description 2
- 239000000654 additive Substances 0.000 description 2
- 239000002390 adhesive tape Substances 0.000 description 2
- 238000004458 analytical method Methods 0.000 description 2
- 238000006243 chemical reaction Methods 0.000 description 2
- 150000002148 esters Chemical class 0.000 description 2
- 238000011156 evaluation Methods 0.000 description 2
- 238000011065 in-situ storage Methods 0.000 description 2
- 239000003068 molecular probe Substances 0.000 description 2
- 238000011002 quantification Methods 0.000 description 2
- 210000003705 ribosome Anatomy 0.000 description 2
- GZCWLCBFPRFLKL-UHFFFAOYSA-N 1-prop-2-ynoxypropan-2-ol Chemical compound CC(O)COCC#C GZCWLCBFPRFLKL-UHFFFAOYSA-N 0.000 description 1
- 108020004465 16S ribosomal RNA Proteins 0.000 description 1
- FPNZBYLXNYPRLR-UHFFFAOYSA-N 2-(4-carbamimidoylphenyl)-1h-indole-6-carboximidamide;hydron;dichloride Chemical compound Cl.Cl.C1=CC(C(=N)N)=CC=C1C1=CC2=CC=C(C(N)=N)C=C2N1 FPNZBYLXNYPRLR-UHFFFAOYSA-N 0.000 description 1
- FWBHETKCLVMNFS-UHFFFAOYSA-N 4',6-Diamino-2-phenylindol Chemical compound C1=CC(C(=N)N)=CC=C1C1=CC2=CC=C(C(N)=N)C=C2N1 FWBHETKCLVMNFS-UHFFFAOYSA-N 0.000 description 1
- 102000013563 Acid Phosphatase Human genes 0.000 description 1
- 108010051457 Acid Phosphatase Proteins 0.000 description 1
- 208000020154 Acnes Diseases 0.000 description 1
- 241000379991 Anaerococcus Species 0.000 description 1
- 241001464907 Anaerococcus hydrogenalis Species 0.000 description 1
- 241000972773 Aulopiformes Species 0.000 description 1
- 241000186031 Corynebacteriaceae Species 0.000 description 1
- 229920000742 Cotton Polymers 0.000 description 1
- 241000408655 Dispar Species 0.000 description 1
- 241000206602 Eukaryota Species 0.000 description 1
- 241000192016 Finegoldia magna Species 0.000 description 1
- 108010015776 Glucose oxidase Proteins 0.000 description 1
- 239000004366 Glucose oxidase Substances 0.000 description 1
- 108020004711 Nucleic Acid Probes Proteins 0.000 description 1
- 241001464887 Parvimonas micra Species 0.000 description 1
- 241000351207 Peptoniphilus Species 0.000 description 1
- 241001464881 Peptoniphilus lacrimalis Species 0.000 description 1
- 241000192035 Peptostreptococcus anaerobius Species 0.000 description 1
- 239000004952 Polyamide Substances 0.000 description 1
- 239000002202 Polyethylene glycol Substances 0.000 description 1
- 241000589776 Pseudomonas putida Species 0.000 description 1
- 239000004480 active ingredient Substances 0.000 description 1
- 239000002313 adhesive film Substances 0.000 description 1
- 102000005936 beta-Galactosidase Human genes 0.000 description 1
- 108010005774 beta-Galactosidase Proteins 0.000 description 1
- 230000027455 binding Effects 0.000 description 1
- 230000000903 blocking effect Effects 0.000 description 1
- 239000007853 buffer solution Substances 0.000 description 1
- 230000008878 coupling Effects 0.000 description 1
- 238000010168 coupling process Methods 0.000 description 1
- 238000005859 coupling reaction Methods 0.000 description 1
- 238000012136 culture method Methods 0.000 description 1
- 230000001419 dependent effect Effects 0.000 description 1
- 229960000633 dextran sulfate Drugs 0.000 description 1
- 238000003745 diagnosis Methods 0.000 description 1
- 238000013399 early diagnosis Methods 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 235000019688 fish Nutrition 0.000 description 1
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 1
- MHMNJMPURVTYEJ-UHFFFAOYSA-N fluorescein-5-isothiocyanate Chemical compound O1C(=O)C2=CC(N=C=S)=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 MHMNJMPURVTYEJ-UHFFFAOYSA-N 0.000 description 1
- 229940116332 glucose oxidase Drugs 0.000 description 1
- 235000019420 glucose oxidase Nutrition 0.000 description 1
- 238000011534 incubation Methods 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
- 239000006225 natural substrate Substances 0.000 description 1
- 230000009871 nonspecific binding Effects 0.000 description 1
- 239000002853 nucleic acid probe Substances 0.000 description 1
- 235000015097 nutrients Nutrition 0.000 description 1
- 230000003287 optical effect Effects 0.000 description 1
- 238000010422 painting Methods 0.000 description 1
- 229940074571 peptostreptococcus anaerobius Drugs 0.000 description 1
- 230000035699 permeability Effects 0.000 description 1
- 229920003023 plastic Polymers 0.000 description 1
- 239000004033 plastic Substances 0.000 description 1
- 229920002647 polyamide Polymers 0.000 description 1
- 229920001223 polyethylene glycol Polymers 0.000 description 1
- 229920000036 polyvinylpyrrolidone Polymers 0.000 description 1
- 239000001267 polyvinylpyrrolidone Substances 0.000 description 1
- 235000013855 polyvinylpyrrolidone Nutrition 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 238000004445 quantitative analysis Methods 0.000 description 1
- 230000005855 radiation Effects 0.000 description 1
- 229920002477 rna polymer Polymers 0.000 description 1
- 235000019515 salmon Nutrition 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 208000017520 skin disease Diseases 0.000 description 1
- 238000011895 specific detection Methods 0.000 description 1
- JGVWCANSWKRBCS-UHFFFAOYSA-N tetramethylrhodamine thiocyanate Chemical compound [Cl-].C=12C=CC(N(C)C)=CC2=[O+]C2=CC(N(C)C)=CC=C2C=1C1=CC=C(SC#N)C=C1C(O)=O JGVWCANSWKRBCS-UHFFFAOYSA-N 0.000 description 1
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE2002132776 DE10232776A1 (de) | 2002-07-18 | 2002-07-18 | Oligonukleotide zum Nachweis von Mikroorganismen |
| DE2003107732 DE10307732A1 (de) | 2003-02-14 | 2003-02-14 | Oligonukleotide zum Nachweis von Mikroorganismen |
| PCT/EP2003/007717 WO2004009839A2 (de) | 2002-07-18 | 2003-07-16 | Obligonukleotide zum nachweis von mikroorganismen |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JP2006500010A JP2006500010A (ja) | 2006-01-05 |
| JP2006500010A5 true JP2006500010A5 (enExample) | 2006-08-31 |
Family
ID=30771717
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2004522470A Withdrawn JP2006500010A (ja) | 2002-07-18 | 2003-07-16 | 微生物検出用オリゴヌクレオチド |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20050202477A1 (enExample) |
| EP (1) | EP1523579A2 (enExample) |
| JP (1) | JP2006500010A (enExample) |
| CN (1) | CN1668765A (enExample) |
| AU (1) | AU2003250080A1 (enExample) |
| BR (1) | BR0312944A (enExample) |
| RU (1) | RU2005103822A (enExample) |
| WO (1) | WO2004009839A2 (enExample) |
Families Citing this family (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP1523580A2 (de) * | 2002-07-18 | 2005-04-20 | Henkel Kommanditgesellschaft auf Aktien | Nachweis von mikroorganismen |
| DE102004025710A1 (de) * | 2004-05-26 | 2005-12-22 | Eppendorf Ag | Verfahren zur taxonspezifischen Zellidentifizierung und Zellsortierung auf grampositive Bakterien und Vorrichtungen hierfür |
| JP5201818B2 (ja) * | 2006-11-10 | 2013-06-05 | キヤノン株式会社 | プローブセット、プローブ固定担体及び遺伝子検査方法 |
| DE102007021387A1 (de) | 2007-05-04 | 2008-11-06 | Eads Deutschland Gmbh | Detektionsvorrichtung zur Detektion von biologischen Mikropartikeln wie Bakterien, Viren, Sporen, Pollen oder biologische Toxine, sowie Detektionsverfahren |
| US20090269764A1 (en) * | 2008-02-19 | 2009-10-29 | Gen-Probe Incorporated | Compositions and methods for detection of propionibacterium acnes nucleic acid |
| MX2010010309A (es) * | 2008-03-26 | 2010-10-08 | Danisco Us Inc | Ceculas hospederas y metodos para producir proteinas que contienen enlace de disulfuro. |
| US8481302B2 (en) * | 2008-11-03 | 2013-07-09 | General Electric Company | Total bacteria monitoring system |
| JP7081802B2 (ja) * | 2018-06-04 | 2022-06-07 | 日本メナード化粧品株式会社 | 赤ニキビを予測する方法 |
| CN109554490B (zh) * | 2018-12-18 | 2020-09-22 | 蚌埠医学院第一附属医院 | 一种与复发性流产相关的微生物及其应用 |
| USD982375S1 (en) | 2019-06-06 | 2023-04-04 | Sharkninja Operating Llc | Food preparation device |
| KR102855638B1 (ko) * | 2020-01-30 | 2025-09-05 | (주)아모레퍼시픽 | 민감성 피부 및 비민감성 피부의 판별방법 |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5541308A (en) * | 1986-11-24 | 1996-07-30 | Gen-Probe Incorporated | Nucleic acid probes for detection and/or quantitation of non-viral organisms |
| US5474796A (en) * | 1991-09-04 | 1995-12-12 | Protogene Laboratories, Inc. | Method and apparatus for conducting an array of chemical reactions on a support surface |
| US5426025A (en) * | 1992-05-28 | 1995-06-20 | Florida State University | Species-specific DNA probes for vibrio vulnificus methods and kits |
| FR2733755B1 (fr) * | 1995-05-03 | 1997-07-11 | Bio Merieux | Fragment nucleotidique de l'arn ribosomique 16s de corynebacteries, sondes et amorces derivees, reactif et procede de detection |
| US6737248B2 (en) * | 1996-01-05 | 2004-05-18 | Human Genome Sciences, Inc. | Staphylococcus aureus polynucleotides and sequences |
| AU5595200A (en) * | 1999-06-04 | 2000-12-28 | Kairos Scientific Inc. | Multispectral taxonomic identification |
| EP1523580A2 (de) * | 2002-07-18 | 2005-04-20 | Henkel Kommanditgesellschaft auf Aktien | Nachweis von mikroorganismen |
-
2003
- 2003-07-16 CN CNA038170558A patent/CN1668765A/zh active Pending
- 2003-07-16 RU RU2005103822/13A patent/RU2005103822A/ru not_active Application Discontinuation
- 2003-07-16 AU AU2003250080A patent/AU2003250080A1/en not_active Abandoned
- 2003-07-16 WO PCT/EP2003/007717 patent/WO2004009839A2/de not_active Ceased
- 2003-07-16 EP EP03765004A patent/EP1523579A2/de not_active Withdrawn
- 2003-07-16 BR BR0312944-6A patent/BR0312944A/pt not_active IP Right Cessation
- 2003-07-16 JP JP2004522470A patent/JP2006500010A/ja not_active Withdrawn
-
2005
- 2005-01-18 US US11/039,026 patent/US20050202477A1/en not_active Abandoned
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