GB2597398B - Multivalent binding composition for nucleic acid analysis - Google Patents

Multivalent binding composition for nucleic acid analysis Download PDF

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Publication number
GB2597398B
GB2597398B GB2115667.4A GB202115667A GB2597398B GB 2597398 B GB2597398 B GB 2597398B GB 202115667 A GB202115667 A GB 202115667A GB 2597398 B GB2597398 B GB 2597398B
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United Kingdom
Prior art keywords
nucleic acid
acid analysis
binding composition
multivalent binding
multivalent
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
GB2115667.4A
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English (en)
Other versions
GB202115667D0 (en
GB2597398A (en
Inventor
Arslan Sinan
He Molly
Previte Michael
Kellinger Matthew
Levieux Jake
Zhao Junhua
Zhang Su
Lopez Tyler
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Element Biosciences Inc
Original Assignee
Element Biosciences Inc
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Filing date
Publication date
Priority claimed from US16/579,794 external-priority patent/US10768173B1/en
Application filed by Element Biosciences Inc filed Critical Element Biosciences Inc
Publication of GB202115667D0 publication Critical patent/GB202115667D0/en
Publication of GB2597398A publication Critical patent/GB2597398A/en
Application granted granted Critical
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2521/00Reaction characterised by the enzymatic activity
    • C12Q2521/10Nucleotidyl transfering
    • C12Q2521/101DNA polymerase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2537/00Reactions characterised by the reaction format or use of a specific feature
    • C12Q2537/10Reactions characterised by the reaction format or use of a specific feature the purpose or use of
    • C12Q2537/157A reaction step characterised by the number of molecules incorporated or released
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/107Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/149Particles, e.g. beads

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
GB2115667.4A 2019-05-24 2020-05-22 Multivalent binding composition for nucleic acid analysis Active GB2597398B (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201962852876P 2019-05-24 2019-05-24
US201962897172P 2019-09-06 2019-09-06
US16/579,794 US10768173B1 (en) 2019-09-06 2019-09-23 Multivalent binding composition for nucleic acid analysis
PCT/US2020/034409 WO2020243017A1 (en) 2019-05-24 2020-05-22 Multivalent binding composition for nucleic acid analysis

Publications (3)

Publication Number Publication Date
GB202115667D0 GB202115667D0 (en) 2021-12-15
GB2597398A GB2597398A (en) 2022-01-26
GB2597398B true GB2597398B (en) 2024-03-06

Family

ID=73554179

Family Applications (1)

Application Number Title Priority Date Filing Date
GB2115667.4A Active GB2597398B (en) 2019-05-24 2020-05-22 Multivalent binding composition for nucleic acid analysis

Country Status (11)

Country Link
EP (1) EP3947731A4 (https=)
JP (2) JP7542000B2 (https=)
KR (3) KR102823471B1 (https=)
CN (1) CN113939601A (https=)
AU (3) AU2020285657B2 (https=)
CA (1) CA3137120A1 (https=)
DE (1) DE112020002516B4 (https=)
GB (1) GB2597398B (https=)
IL (3) IL316901A (https=)
SG (1) SG11202112049VA (https=)
WO (1) WO2020243017A1 (https=)

Families Citing this family (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2019241305A1 (en) 2018-06-12 2019-12-19 Element Biosciences, Inc. Improved reverse transcriptase for nucleic acid sequencing
US10768173B1 (en) 2019-09-06 2020-09-08 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
US10704094B1 (en) 2018-11-14 2020-07-07 Element Biosciences, Inc. Multipart reagents having increased avidity for polymerase binding
WO2020102766A2 (en) 2018-11-15 2020-05-22 Element Biosciences, Inc. Methods for generating circular nucleic acid molecules
AU2019392932B2 (en) 2018-12-07 2023-11-02 Element Biosciences, Inc. Flow cell device and use thereof
US12313627B2 (en) 2019-05-01 2025-05-27 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
US12391929B2 (en) 2019-05-24 2025-08-19 Element Biosciences, Inc. Polymerase-nucleotide conjugates for sequencing by trapping
US11287422B2 (en) 2019-09-23 2022-03-29 Element Biosciences, Inc. Multivalent binding composition for nucleic acid analysis
US11060138B1 (en) 2020-01-17 2021-07-13 Element Biosciences, Inc. Nucleic acid sequencing systems
US11198121B1 (en) 2020-06-10 2021-12-14 Element Biosciences, Inc. Flow cell systems and devices
GB2599729A (en) * 2020-10-12 2022-04-13 Sumitomo Chemical Co Method comprising light emitting marker
CA3196800A1 (en) 2020-10-30 2022-05-05 Element Biosciences, Inc. Reagents for massively parallel nucleic acid sequencing
AU2022316142A1 (en) 2021-07-21 2024-02-22 Element Biosciences, Inc. Optical systems for nucleic acid sequencing and methods thereof
KR20230153706A (ko) 2022-04-29 2023-11-07 연세대학교 산학협력단 핵산의 검출 또는 분리용 조성물 및 이를 이용한 핵산의 검출 또는 분리 방법
EP4573213A1 (en) 2022-08-15 2025-06-25 Element Biosciences, Inc. Spatially resolved surface capture of nucleic acids
CN116024315B (zh) * 2022-11-30 2025-09-09 温州医科大学 一种基于链置换反应的多价双锁钥系统及其在核苷酸多态性检测中的应用
WO2026080904A2 (en) 2024-10-11 2026-04-16 Element Biosciences, Inc. Systems and methods for performing dna sequencing

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2005111240A2 (en) * 2004-04-30 2005-11-24 Li-Cor, Inc. Field-switch sequencing
WO2009073201A2 (en) * 2007-12-04 2009-06-11 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
US20090186343A1 (en) * 2003-01-28 2009-07-23 Visigen Biotechnologies, Inc. Methods for preparing modified biomolecules, modified biomolecules and methods for using same
US20100093992A1 (en) * 2004-11-05 2010-04-15 Dmitry Cherkasov Macromolecular Nucleotide Compounds and Methods for Using the Same
WO2012027625A2 (en) * 2010-08-25 2012-03-01 Pacific Biosciences Of California, Inc. Scaffold-based polymerase enzyme substrates
WO2013123258A1 (en) * 2012-02-15 2013-08-22 Pacific Biosciences Of California, Inc. Polymerase enzyme substrates with protein shield

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7056661B2 (en) 1999-05-19 2006-06-06 Cornell Research Foundation, Inc. Method for sequencing nucleic acid molecules
WO2012150035A1 (de) * 2011-05-04 2012-11-08 Genovoxx Gmbh Nukleosid-triphosphat-konjugate und methoden zu deren anwendung
EP3589752B1 (en) 2017-01-26 2021-05-19 QIAGEN GmbH Method for generating a sequencing library
WO2018144854A1 (en) 2017-02-02 2018-08-09 Caris Science, Inc. Targeted oligonucleotides

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20090186343A1 (en) * 2003-01-28 2009-07-23 Visigen Biotechnologies, Inc. Methods for preparing modified biomolecules, modified biomolecules and methods for using same
WO2005111240A2 (en) * 2004-04-30 2005-11-24 Li-Cor, Inc. Field-switch sequencing
US20100093992A1 (en) * 2004-11-05 2010-04-15 Dmitry Cherkasov Macromolecular Nucleotide Compounds and Methods for Using the Same
WO2009073201A2 (en) * 2007-12-04 2009-06-11 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
WO2012027625A2 (en) * 2010-08-25 2012-03-01 Pacific Biosciences Of California, Inc. Scaffold-based polymerase enzyme substrates
WO2013123258A1 (en) * 2012-02-15 2013-08-22 Pacific Biosciences Of California, Inc. Polymerase enzyme substrates with protein shield

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
Anderson, J P. Et al "Flurescent Structural DNA Nanoballs Functionalized with Phospate - Lineked Nucleotide Triphosphates" Nano Letters 2010 10(3): 788-792. doi: 10.1021/nl9039718. Abstract, second last paragraph, Fig 3A *
Technology Spotlight: Illumina Sequencing, 2010, downloaded form https://www.illumina.com/documents/products/techspotlights/techspotlight_sequencing. pdf on 31/07.2020 *

Also Published As

Publication number Publication date
KR20250096873A (ko) 2025-06-27
JP7542000B2 (ja) 2024-08-29
AU2022291540B2 (en) 2024-11-14
IL301380B1 (en) 2025-01-01
IL287528B1 (en) 2023-04-01
IL316901A (en) 2025-01-01
SG11202112049VA (en) 2021-12-30
IL301380A (en) 2023-05-01
DE112020002516T5 (de) 2022-03-24
CA3137120A1 (en) 2020-12-03
EP3947731A4 (en) 2022-06-29
CN113939601A (zh) 2022-01-14
JP2022535187A (ja) 2022-08-05
IL301380B2 (en) 2025-05-01
IL287528B2 (en) 2023-08-01
IL287528A (en) 2021-12-01
DE112020002516B4 (de) 2025-03-13
EP3947731A1 (en) 2022-02-09
KR20230165871A (ko) 2023-12-05
AU2025200380A1 (en) 2025-02-06
GB202115667D0 (en) 2021-12-15
KR102823471B1 (ko) 2025-06-19
KR20210144929A (ko) 2021-11-30
AU2020285657A1 (en) 2021-11-18
WO2020243017A1 (en) 2020-12-03
KR102607124B1 (ko) 2023-11-29
AU2020285657B2 (en) 2022-10-06
AU2022291540A1 (en) 2023-02-02
JP2024174880A (ja) 2024-12-17
GB2597398A (en) 2022-01-26

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