CN106434928A - 一组用于肺腺癌早期诊断的circRNA标志物及其应用 - Google Patents

一组用于肺腺癌早期诊断的circRNA标志物及其应用 Download PDF

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CN106434928A
CN106434928A CN201610876817.4A CN201610876817A CN106434928A CN 106434928 A CN106434928 A CN 106434928A CN 201610876817 A CN201610876817 A CN 201610876817A CN 106434928 A CN106434928 A CN 106434928A
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朱晓莉
王西勇
张洪明
韩淑华
陈燕
陈阳
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Abstract

本发明属于生物技术领域,一组用于肺腺癌早期诊断的circRNA标志物及其应用。本发明包括circRNA_100323、circRNA_69774、circRNA_403738、circRNA_ 404449四种circRNA。本发明的有益效果在于提供了一组对肺腺癌有诊断价值的新型生物分子标志物。经临床样本病例验证,本组circRNA对早期肺腺癌的诊断具有较高的诊断特异性和敏感度。

Description

一组用于肺腺癌早期诊断的circRNA标志物及其应用
技术领域
本发明属于肿瘤基因检测技术领域,涉及一种用于肺腺癌早期诊断的circRNA标志物、相关试剂盒及它们的用途。
背景技术
肺癌是严重危害人类健康的第一大恶性肿瘤,其发病率(120万/年)和死亡率(110万/年)均居全球癌症首位。2014年《中国肿瘤登记年报》显示,在我国肺癌也是发病率和死亡率最高的恶性肿瘤(我国每年新发肺癌患者人数60万以上)。肺癌5年生存率仅约15.6%,主要原因是多数患者在诊断时已属晚期,因此肺癌的早期发现早期诊断至关重要。
环状RNA是一类由特殊的选择性剪切产生的首尾相接的非编码RNA。起初它们被认为是基因组转录的“噪音”,不具有生物学功能。然而,近年来的研究表明circRNA在人体中发挥着巨大的基因调节功能。与线性RNA分子相比,circRNA作为生物分子标志物具有如下优势:(1)circRNA形成特殊的共价闭合环状结构,3’端没有多聚腺苷酸尾,不会被核酸外切酶R所酶切,因此稳定性高,便于样品的保存;(2)circRNA可以通过外泌体而进入血液、组织液及痰液中,便于取样;(3)circRNA长度多在200-400碱基,使用qPCR即可定量检测,可操作性强。目前已经在食管癌、胃癌、肝癌等恶性肿瘤中相继发现了具有早期诊断价值的circRNA,但是在肺癌领域中尚未见相关circRNA的报道。
发明内容
解决的技术问题:本发明的目的在于提供一组用于肺腺癌早期诊断的circRNA标志物及其应用,为肺腺癌的早期诊断提供参考依据。本发明所提供的circRNA生物标志物对于人肺腺癌具有很高的灵敏度和特异性,尤其对人早期肺腺癌具有很好的检测效果,可以作为新型的生物标志物用于肺腺癌的检测。
技术方案:一组用于肺腺癌早期诊断的circRNA标志物,标志物包括:SEQ ID No:1所示的circRNA_100323、SEQ ID No:2所示的circRNA_69774、SEQ ID No:3所示的circRNA_403738、SEQ ID No:4所示的circRNA_404449四种circRNA。
上述肺腺癌为人早期肺腺癌。
上述circRNA标志物的引物组合,所述circRNA引物的组合包括:针对circRNA_100323的特异性引物、针对circRNA_69774的特异性引物、针对circRNA_403738的特异性引物、针对circRNA_404449的特异性引物。
上述circRNA标志物的引物组合,所述针对circRNA_100323的特异性引物包括如SEQ ID No:9所示的上游引物,如SEQ IDNo:10所示的下游引物;所述针对circRNA_69774的特异性引物包括如SEQ ID No:11所示的上游引物,如SEQ ID No:12所示的下游引物;所述针对circRNA_403738的特异性引物包括如SEQ ID No:13所示的上游引物,如SEQ ID No:14所示的下游引物;所述针对circRNA_404449的特异性引物包括如SEQ ID No:15所示的上游引物,如SEQ ID No:16所示的下游引物。
上述circRNA标志物的引物组合,所述circRNA引物的组合还包括:针对SEQ IDNo:5所示的circRNA_104855的特异性引物、针对SEQ ID No:6所示的circRNA_100983的特异性引物、针对SEQ ID No:7所示的circRNA_1011969的特异性引物、针对SEQ ID No:8所示的circRNA_006718的特异性引物。
上述circRNA标志物的引物组合,所述针对circRNA_104855的特异性引物包括:如SEQ ID No:17所示的上游引物和如SEQ IDNo:18所示的下游引物;所述针对circRNA_100983的特异性引物包括:如SEQ ID No:19所示的上游引物和如SEQ IDNo:20所示的下游引物;所述针对circRNA_1011969的特异性引物包括:如SEQ ID No:21所示的上游引物和如SEQ IDNo:22所示的下游引物;所述针对circRNA_006718的特异性引物包括:如SEQ ID No:23所示的上游引物和如SEQ ID No:24所示的下游引物。
上述circRNA标志物的引物组合在制备或筛选人肺腺癌的肿瘤诊断药物中的用途。
一种人肺腺癌的肿瘤诊断试剂盒,包括所述的circRNA标志物的引物组合。
一种检测人肺腺癌的circRNA芯片,所述circRNA芯片包括固相载体以及固定于固相载体上的针对如上所述的circRNA生物标志物的探针。
本发明所提供的人肺腺癌早期诊断用circRNA生物标志物,可用于肺腺癌的早期诊断。其区分早期肺腺癌和配对正常肺组织的AUC可达0.841,显著性高于这4个circRNAs单独诊断早期肺腺癌的AUC(P<0.05),其ROC曲线表明这4个circRNAs诊断早期肺腺癌的灵敏度和特异性分别为83.4%和73.5%,显著性高于单个circRNA用于肺腺癌诊断的灵敏度和特异性(P<0.05)。
有益效果:(1)本方法通过定量PCR对一组circRNA的检测,实现对肺腺癌的早期诊断,肺癌的早期发现和诊断提供参考价值。(2)本方法特异性强、敏感性高、结果稳定等优点,具有广泛的临床应用前景和巨大的商业价值。
附图说明
图1.本发明8个circRNA联合起来区分训练集(n=30)肺腺癌及其配对正常肺组织的ROC曲线图;
图2.本发明优化的4个circRNA联合起来区分训练集(n=30)肺腺癌及其配对正常肺组织的ROC曲线图;
图3.本发明优化的4个circRNA联合起来区分验证集(n=30)肺腺癌及其配对正常肺组织的ROC曲线图。
具体实施方式
以下通过特定的具体实例说明本发明的实施方式。
实施例1
1临床样本收集:
收集东南大学附属中大医院2013-2014年期间存档的早期(IA期)肺腺癌石蜡组织标本及其配对正常肺组织60对。所有病人对参与科学研究均签署知情同意书。
2 circRNA定量PCR实验:
2.1 RNA抽提及定量PCR
利用Trizol从组织中抽提总RNA,用微体积分光光度计对RNA进行定量。
2.2引物
本发明所提供的一组circRNA包括circRNA_100323、circRNA_69774、circRNA_403738、circRNA_404449、circRNA_104855、circRNA_100983、circRNA_1011969、circRNA_006718等8种circRNA。它们均是从早期肺腺癌患者circRNA芯片检测的结果中挑选的,以GAPDH为内参基因(SEQ ID No:27),引物序列如表1所示:
表1定量PCR使用的引物序列
2.3逆转录反应
使用TakaRa PrimeScript RT reagent Kit试剂盒进行逆转录,RNA起始量为1μg,逆转录反应组分的用量如表2所示,反应条件:37℃15min,85℃5sec完成后低温保存备用。
表2逆转录反应体系组成
2.4实时定量PCR反应
实时定量PCR使用TaKaRa公司的SYBR Premix Ex Taq(Tli RnaseH Plus)试剂盒,定量仪器为BioRad公司CFX96型实时PCR仪。反应体系如表3所示,反应条件如表5所示步骤,每个实时定量PCR反应分别做三个重复。
表3实时定量PCR反应体系
反应程序为:95℃2min;95℃30sec,56℃50sec,40个循环。
数据以平均值±标准差的形式表示,使用SPSS 18.0软件对数据进行统计分析。除非有特殊的说明。肺腺癌与其配对正常肺组织中circRNA的表达差异统计使用配对样本t检验的方法,所有P值均为双侧,P<0.05被认为有统计学意义。
2.5 8个circRNA区分肺腺癌及其配对正常肺组织的能力评估
我们利用ROC曲线来评估这8个区分肺腺癌及其配对正常肺组织的能力。单个circRNA用于肺腺癌诊断的AUC为0.53-0.75,灵敏度为54.4%-77.4%,特异性为49.1%-77.5%(表4)。我们将这8个circRNA联合起来用于30对肺腺癌样本的诊断,其AUC值可达到0.854(图1),在选择合适阈值之后,灵敏度和特异性分别为80.1%和83.3%。
表4 8个circRNA在训练集(30对样本)中的表达情况
2.6优选的4个circRNA区分肺腺癌及其配对正常肺组织的能力评估
通过线性逻辑回归分析,我们从8个circRNA中分析优选得到了4个circRNA。我们利用ROC曲线来评估4个在训练集中区分肺腺癌及其配对正常肺组织的能力(所用30对样本与2.5相同)。这4个circRNA结合起来区分早期肺腺癌和配对正常肺组织的AUC可达0.820(图2所示),接近8个circRNA联合检测水平,并显著高于这4个circRNA单独诊断早期肺腺癌的AUC(P<0.05)。在选择合适的阈值之后,ROC曲线表明这4个circRNA诊断早期肺腺癌的灵敏度和特异性分别为83.3%和80.0%,显著高于单个circRNA用于肺腺癌诊断的灵敏度和特异性(P<0.05)。
表5 4个circRNA在验证集(30对样本)中的诊断结果
我们在另外一组30例肺腺癌样本及其配对正常肺组织(验证集)中验证从训练集筛选出的这4个circRNA的检测特性。这4个circRNA在肺腺癌及其配对正常肺组织均中有显著性差异表达(P<0.001)。单个circRNA用于检测肺腺癌的AUC为0.73-0.82,灵敏度为65.6%-79.3%,特异性为67.9%-76.3%(表5)。这4个circRNA联合检测60对肺腺癌样本的AUC可达0.841(图3),在选择合适的阈值之后,ROC曲线表明其灵敏度为83.4%,特异性为73.5%,均显著高于任何单个circRNA的检测能力(P<0.05)。并且,这组circRNA在两组独立样本(训练集和验证集)中具有类似的检测能力,说明这组circRNA可以作为肺腺癌早期检测的生物标志物。
以上所述,仅为本发明的较佳实施例,并非对本发明任何形式上和实质上的限制,应当指出,对于本技术领域的普通技术人员,在不脱离本发明方法的前提下,还将可以做出若干改进和补充,这些改进和补充也应视为本发明的保护范围。凡熟悉本专业的技术人员,在不脱离本发明的精神和范围的情况下,当可利用以上所揭示的技术内容而做出的些许更动、修饰与演变的等同变化,均为本发明的等效实施例;同时,凡依据本发明的实质技术对上述实施例所作的任何等同变化的更动、修饰与演变,均仍属于本发明的技术方案的范围内。
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aaaauuuuca aaaaaacuaa aucuuauuua cgugcaaaau aaaauaauuu ugaauaauga 15660
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ugccauauca guuauuauug uaucugaauu gggugauaag acauuuuuua uagcagccau 15840
cauggcaaug cgcuauaacc gccugaccgu gcuggcuggu gcaaugcuug ccuugggacu 15900
aaugacaugc uugucag 15917
<210> 3
<211> 239
<212> RNA
<213> Homo sapiens
<400> 3
gaucagcauu gaggcccgca agucacccaa gcugccccgg gcugcucagg agcucucccg 60
guccccacgg uugccccugc gcaagcccuc ugugggcucg cccagccuga cucggagaga 120
guuuccuuuu gaagacauca cucagcacaa cuaucuugcu caggucacgu cuaauaucug 180
gggaaccaaa uuuaagauug ugggcuuggc ugcuuuccug ccaaccaacc ucggugcag 239
<210> 4
<211> 389
<212> RNA
<213> Homo sapiens
<400> 4
gcaauuuuua cccagaaaag caagccgggg ccugacccgu uggacacgag acgcuugcag 60
ggcuuucggc uggaggagua ucugauaggg caguccauug guaagggcug cagugcugcu 120
guguaugaag ccaccaugcc uacauugccc cagaaccugg aggugacaaa gagcaccggg 180
uugcuuccag ggagaggccc agguaccagu gcaccaggag aagggcagga gcgagcuccg 240
ggggccccug ccuuccccuu ggccaucaag augaugugga acaucucggc agguuccucc 300
agcgaagcca ucuugaacac aaugagccag gagcuggucc cagcgagccg aguggccuug 360
gcuggggagu auggagcagu cacuuacag 389
<210> 5
<211> 471
<212> RNA
<213> Homo sapiens
<400> 5
agggguguuu gaugcuuccc ucaaaauggc uggcuucuau ggauuguaua ccuggcugac 60
ucauacuaug uuuggcauca auauugucuu cauaccauca gcauuagcag caauccuugg 120
agcagugcca uuccugggga cauacugggc agcaguaccu gcaguucuug accuguggcu 180
gacacaaggg uuaggaugca aggccauuuu acuguugauu uuucaucucu ugccaacaua 240
cuuuguagau acugcaaucu acucugacau aucaggaggu ggccauccuu accugacagg 300
cuuggcagug gccgguggag cauacuaccu aggccuggaa ggagcaauca ucgguccuau 360
ucuucucugc auacuugugg uugcuuccaa uaucuauagu gccaugcuag ugagucccac 420
gaauucaguu cccacgccaa accagacccc auggccugcu cagccucagc g 471
<210> 6
<211> 359
<212> RNA
<213> Homo sapiens
<400> 6
guacuuuaau uaucggacua ccagguuccu ggcugaggag ggguuuuaua aauuccauaa 60
cugguuugau gaccgagccu gguacccuuu gggacgaauc auuggaggaa caauuuaccc 120
agguuuaaug aucaccucug cugcaaucua ccauguacuc cauuuuuucc acaucaccau 180
cgacauucgg aaugucugug uguuccuggc cccucucuuc uccuccuuca ccaccaucgu 240
cacguaccac cuuaccaaag agcucaagga ugcaggggcu gggcuucuug cugcugccau 300
gauugcugua guuccuggau auaucucccg aucuguggcu ggcuccuaug auaaugaag 359
<210> 7
<211> 146
<212> RNA
<213> Homo sapiens
<400> 7
uggcuggcgu ggcucaccga uuccacagua cuugcggcaa gaacgucacu cuagaggagg 60
auggcacgag ggcagugcgu gccgcuggcu augcucaugg ccuugucuuc aguaccaagg 120
agcugagggc ugaggaaguc uuugag 146
<210> 8
<211> 266
<212> RNA
<213> Homo sapiens
<400> 8
cuuggcuugu ggagauguug aaggaaaguu ugauauuuua uucaauagag uucaagcaau 60
ucagaagaaa aguggaaacu uugaucugcu guugugugua ggaaauuucu uuggcuccac 120
ccaagaugcu gaaugggagg aguauaagac uggcaucaag aaagcuccua uucagacaua 180
ugugcuuggu gcuaauaacc aggaaacagu aaaauauuuc caggaugcug auggauguga 240
auuagcugaa aacauuacuu aucugg 266
<210> 9
<211> 21
<212> DNA
<213> 人工序列
<400> 9
gtttgctggc tgggcttttc c 21
<210> 10
<211> 24
<212> DNA
<213> 人工序列
<400> 10
gggacctcta atagctgggg gttc 24
<210> 11
<211> 23
<212> DNA
<213> 人工序列
<400> 11
tgcttgcctt gggactaatg aca 23
<210> 12
<211> 20
<212> DNA
<213> 人工序列
<400> 12
cggcggctaa actggagtca 20
<210> 13
<211> 23
<212> DNA
<213> 人工序列
<400> 13
tttaagattg tgggcttggc tgc 23
<210> 14
<211> 17
<212> DNA
<213> 人工序列
<400> 14
gcgggcctca atgctga 17
<210> 15
<211> 20
<212> DNA
<213> 人工序列
<400> 15
gtggccttgg ctggggagta 20
<210> 16
<211> 23
<212> DNA
<213> 人工序列
<400> 16
ccggcttgct tttctgggta aaa 23
<210> 17
<211> 20
<212> DNA
<213> 人工序列
<400> 17
acgccaaacc agaccccatg 20
<210> 18
<211> 22
<212> DNA
<213> 人工序列
<400> 18
agccagccat tttgagggaa gc 22
<210> 19
<211> 24
<212> DNA
<213> 人工序列
<400> 19
tgtggctggc tcctatgata atga 24
<210> 20
<211> 25
<212> DNA
<213> 人工序列
<400> 20
atttataaaa cccctcctca gccag 25
<210> 21
<211> 24
<212> DNA
<213> 人工序列
<400> 21
ctgagggctg aggaagtctt tgag 24
<210> 22
<211> 20
<212> DNA
<213> 人工序列
<400> 22
agagtgacgt tcttgccgca 20
<210> 23
<211> 24
<212> DNA
<213> 人工序列
<400> 23
tgtggctggc tcctatgata atga 24
<210> 24
<211> 25
<212> DNA
<213> 人工序列
<400> 24
atttataaaa cccctcctca gccag 25
<210> 25
<211> 20
<212> DNA
<213> 人工序列
<400> 25
ttcttttgcg tcgccagccg 20
<210> 26
<211> 20
<212> DNA
<213> 人工序列
<400> 26
ggtgaccagg cgcccaatac 20
<210> 27
<211> 1455
<212> RNA
<213> Homo sapiens
<400> 27
ggcaccgcag gccccgggau gcuagugcgc agcgggugca ucccuguccg gaugcugcgc 60
cugcgguaga gcggccgcca uguugcaacc gggaaggaaa ugaaugggca gccguuagga 120
aagccugccg gugacuaacc cugcgcuccu gccucgaugg guggagucgc guguggcggg 180
gaagucaggu ggagcgaggc uagcuggccc gauuucuccu ccgggugaug cuuuuccuag 240
auuauucucu gauuuggucg uauugggcgc cuggucacca gggcugcuuu uaacucuggu 300
aaaguggaua uuguugccau caaugacccc uucauugacc ucaacuacau gguuuacaug 360
uuccaauaug auuccaccca uggcaaauuc cauggcaccg ucaaggcuga gaacgggaag 420
cuugucauca auggaaaucc caucaccauc uuccaggagc gagaucccuc caaaaucaag 480
uggggcgaug cuggcgcuga guacgucgug gaguccacug gcgucuucac caccauggag 540
aaggcugggg cucauuugca ggggggagcc aaaaggguca ucaucucugc ccccucugcu 600
gaugccccca uguucgucau gggugugaac caugagaagu augacaacag ccucaagauc 660
aucagcaaug ccuccugcac caccaacugc uuagcacccc uggccaaggu cauccaugac 720
aacuuuggua ucguggaagg acucaugacc acaguccaug ccaucacugc cacccagaag 780
acuguggaug gccccuccgg gaaacugugg cgugauggcc gcggggcucu ccagaacauc 840
aucccugccu cuacuggcgc ugccaaggcu gugggcaagg ucaucccuga gcugaacggg 900
aagcucacug gcauggccuu ccgugucccc acugccaacg ugucaguggu ggaccugacc 960
ugccgucuag aaaaaccugc caaauaugau gacaucaaga agguggugaa gcaggcgucg 1020
gagggccccc ucaagggcau ccugggcuac acugagcacc agguggucuc cucugacuuc 1080
aacagcgaca cccacuccuc caccuuugac gcuggggcug gcauugcccu caacgaccac 1140
uuugucaagc ucauuuccug guaugacaac gaauuuggcu acagcaacag ggugguggac 1200
cucauggccc acauggccuc caaggaguaa gaccccugga ccaccagccc cagcaagagc 1260
acaagaggaa gagagagacc cucacugcug gggagucccu gccacacuca gucccccacc 1320
acacugaauc uccccuccuc acaguugcca uguagacccc uugaagaggg gaggggccua 1380
gggagccgca ccuugucaug uaccaucaau aaaguacccu gugcucaacc aguuaaaaaa 1440
aaaaaaaaaa aaaaa 1455

Claims (9)

1.一组用于肺腺癌早期诊断的circRNA标志物,其特征在于所示的标志物包括:SEQ IDNo:1 所示的circRNA_100323、SEQ ID No:2 所示的circRNA_69774、SEQ ID No:3 所示的circRNA_403738、SEQ ID No:4 所示的circRNA_ 404449四种circRNA。
2.如权利要求1 所述一组用于肺腺癌早期诊断的circRNA标志物,其特征在于所述肺腺癌为人早期肺腺癌。
3.权利要求1所述circRNA标志物的引物组合,其特征在于所述circRNA 引物的组合包括:针对circRNA_100323的特异性引物、针对circRNA_69774的特异性引物、针对circRNA_403738的特异性引物、针对circRNA_ 404449的特异性引物。
4.如权利要求3所述circRNA标志物的引物组合,其特征在于所述针对circRNA_100323的特异性引物包括如SEQ ID No:9 所示的上游引物,如SEQ IDNo:10 所示的下游引物;所述针对circRNA_69774的特异性引物包括如SEQ ID No:11所示的上游引物,如SEQ ID No:12 所示的下游引物;所述针对circRNA_403738的特异性引物包括如SEQ ID No:13 所示的上游引物,如SEQ ID No:14 所示的下游引物;所述针对circRNA_ 404449的特异性引物包括如SEQ ID No:15所示的上游引物,如SEQ ID No:16所示的下游引物。
5.如权利要求3 所述circRNA标志物的引物组合,其特征在于所述circRNA引物的组合还包括:针对SEQ ID No:5 所示的circRNA_104855的特异性引物、针对SEQ ID No:6所示的circRNA_100983的特异性引物、针对SEQ ID No:7 所示的circRNA_1011969的特异性引物、针对SEQ ID No:8 所示的circRNA_006718的特异性引物。
6.如权利要求5 所述circRNA标志物的引物组合,其特征在于所述针对circRNA_104855的特异性引物包括:如SEQ ID No:17 所示的上游引物和如SEQ IDNo:18 所示的下游引物;所述针对circRNA_100983的特异性引物包括:如SEQ ID No:19 所示的上游引物和如SEQ IDNo:20 所示的下游引物;所述针对circRNA_1011969的特异性引物包括:如SEQ IDNo:21 所示的上游引物和如SEQ IDNo:22 所示的下游引物;所述针对circRNA_006718的特异性引物包括:如SEQ ID No:23 所示的上游引物和如SEQ IDNo:24 所示的下游引物。
7.权利要求3-5任一权利要求所述的circRNA标志物的引物组合在制备或筛选人肺腺癌的肿瘤诊断药物中的用途。
8.一种人肺腺癌的肿瘤诊断试剂盒,其特征在于包括如权利要求3-5任一权利要求所述的circRNA 标志物的引物组合。
9.一种检测人肺腺癌的circRNA 芯片,其特征在于所述circRNA 芯片包括固相载体以及固定于固相载体上的针对如权利要求1所述的circRNA 生物标志物的探针。
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CN116144772B (zh) * 2022-11-18 2023-08-25 昆明医科大学第一附属医院 一种Hsa_circ_0006117在制备治疗肺腺癌药物中的应用
CN116144772A (zh) * 2022-11-18 2023-05-23 昆明医科大学第一附属医院 一种Hsa_circ_0006117在制备治疗肺腺癌药物中的应用

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