CN102187215A - 基于回归的多级pcr分析系统 - Google Patents

基于回归的多级pcr分析系统 Download PDF

Info

Publication number
CN102187215A
CN102187215A CN2009801405572A CN200980140557A CN102187215A CN 102187215 A CN102187215 A CN 102187215A CN 2009801405572 A CN2009801405572 A CN 2009801405572A CN 200980140557 A CN200980140557 A CN 200980140557A CN 102187215 A CN102187215 A CN 102187215A
Authority
CN
China
Prior art keywords
function
derivative
amplification
data
baseline
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN2009801405572A
Other languages
English (en)
Chinese (zh)
Inventor
J·雷纳
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Bio Rad Laboratories Inc
Original Assignee
Bio Rad Laboratories Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Bio Rad Laboratories Inc filed Critical Bio Rad Laboratories Inc
Publication of CN102187215A publication Critical patent/CN102187215A/zh
Pending legal-status Critical Current

Links

Images

Classifications

    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06FELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10Complex mathematical operations
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]

Landscapes

  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Data Mining & Analysis (AREA)
  • Theoretical Computer Science (AREA)
  • Mathematical Physics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Mathematical Analysis (AREA)
  • Mathematical Optimization (AREA)
  • Computational Mathematics (AREA)
  • Pure & Applied Mathematics (AREA)
  • Databases & Information Systems (AREA)
  • Software Systems (AREA)
  • Algebra (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CN2009801405572A 2008-09-09 2009-09-09 基于回归的多级pcr分析系统 Pending CN102187215A (zh)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US9541008P 2008-09-09 2008-09-09
US61/095,410 2008-09-09
PCT/US2009/056384 WO2010030686A1 (en) 2008-09-09 2009-09-09 Multi-stage, regression-based pcr analysis system

Publications (1)

Publication Number Publication Date
CN102187215A true CN102187215A (zh) 2011-09-14

Family

ID=42005454

Family Applications (1)

Application Number Title Priority Date Filing Date
CN2009801405572A Pending CN102187215A (zh) 2008-09-09 2009-09-09 基于回归的多级pcr分析系统

Country Status (6)

Country Link
US (3) US8285489B2 (https=)
EP (1) EP2326949A1 (https=)
JP (1) JP5166608B2 (https=)
CN (1) CN102187215A (https=)
CA (1) CA2736243A1 (https=)
WO (1) WO2010030686A1 (https=)

Cited By (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105755159A (zh) * 2016-05-13 2016-07-13 苏州国科闻普生物科技有限公司 自动快速判别荧光定量pcr结果的方法
CN106908655A (zh) * 2017-03-06 2017-06-30 广东顺德工业设计研究院(广东顺德创新设计研究院) 光电信号峰值检测方法与系统
CN111149170A (zh) * 2017-09-28 2020-05-12 Seegene株式会社 分析试样内靶分析物的方法及装置
CN111433372A (zh) * 2017-10-19 2020-07-17 生物辐射实验室股份有限公司 具有光致发光的非常规和/或反向变化的数字扩增试验
CN112685686A (zh) * 2020-08-25 2021-04-20 杭州博日科技股份有限公司 一种熔解曲线平滑方法
CN114065120A (zh) * 2022-01-14 2022-02-18 深圳市刚竹医疗科技有限公司 测定pcr的直线-s形生长曲线的循环阈值的方法
CN114058683A (zh) * 2021-11-17 2022-02-18 杭州优思达生物技术有限公司 一种核酸扩增结果判定方法
CN116564411A (zh) * 2023-07-12 2023-08-08 广州普世君安生物科技有限公司 等温扩增核酸的结果判定方法、系统、设备及存储介质
WO2024153009A1 (zh) * 2023-01-19 2024-07-25 江苏普瑞悉恩生物科技有限公司 核酸样本检测定量方法及装置、存储介质及电子设备

Families Citing this family (26)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010030686A1 (en) * 2008-09-09 2010-03-18 Bio-Rad Laboratories, Inc. Multi-stage, regression-based pcr analysis system
EP2475987B1 (en) 2009-09-12 2021-12-15 Azure Vault Ltd Identifying transition points in chemical reactions
EP2558971B1 (en) * 2010-04-11 2021-02-17 Life Technologies Corporation SYSTEMS AND METHODS FOR MODEL-BASED qPCR
US8666673B2 (en) 2010-05-14 2014-03-04 Biomerieux, Inc Identification and/or characterization of a microbial agent using taxonomic hierarchical classification
US9988675B2 (en) 2011-03-15 2018-06-05 Azure Vault Ltd. Rate based identification of reaction points
AU2013203281A1 (en) * 2012-02-03 2013-08-22 Axxin Pty Ltd Nucleic acid amplification and detection apparatus and method
US10475527B2 (en) 2012-03-22 2019-11-12 Biomerieux, Inc. Method and system for detection of microbial growth in a specimen container
US9932629B2 (en) 2012-06-26 2018-04-03 Axxin Pty Ltd Nucleic acid amplification and detection kit
US9607128B2 (en) 2013-12-30 2017-03-28 Roche Molecular Systems, Inc. Detection and correction of jumps in real-time PCR signals
KR20160039529A (ko) * 2014-10-01 2016-04-11 주식회사 씨젠 증폭곡선을 보정하는 방법 및 시료 분석을 위한 정보를 획득하는 방법, 그 기록매체, 그 컴퓨터 프로그램, 컴퓨터 장치
EP3218698B1 (en) 2014-11-14 2020-05-13 Axxin Pty Ltd Biological sample collection and storage assembly
US10470090B2 (en) * 2014-11-14 2019-11-05 Qualcomm Incorporated Data compression techniques for handover and radio link failure recovery
EP3325156A4 (en) 2015-07-17 2019-01-16 Axxin Pty Ltd DIAGNOSTIC TEST ASSEMBLY, APPARATUS, METHOD
EP3353697B1 (en) * 2015-09-24 2025-11-05 Seegene, Inc. Multiple dataset analysis for determining the presence or absence of target analyte
WO2017135756A1 (en) 2016-02-05 2017-08-10 Seegene, Inc. Method for reducing noise level of data set for a target analyte
EP3688465B1 (en) 2017-09-27 2025-11-12 Axxin Pty Ltd Diagnostic test system and method
US11209417B2 (en) * 2017-10-12 2021-12-28 Carrot, Inc. Breath sensor apparatus and methods of use
CN113966535A (zh) 2019-06-14 2022-01-21 Seegene 株式会社 用于协同开发用于检测靶核酸的试剂的计算机实施的方法
CN114901139B (zh) 2019-12-31 2025-10-28 麦克内尔股份公司 呼吸传感器校准方法和装置
DE102020116178A1 (de) * 2020-06-18 2021-12-23 Analytik Jena Gmbh Verfahren zum Erkennen einer Amplifikationsphase in einer Amplifikation
CN112257754B (zh) * 2020-09-24 2023-07-28 北京航天测控技术有限公司 航天器运行状态的分析方法和装置
EP4421814A4 (en) 2021-10-21 2025-11-12 Seegene Inc APPROVAL AND METHOD FOR READING A POSITIVE/NEGATIVE RESULT WITH RESPECT TO A TARGET TEST SUBSTANCE IN A SAMPLE
KR20250020611A (ko) 2022-07-05 2025-02-11 주식회사 씨젠 복수의 표적 분석물 각각에 대한 근사 신호의 획득 방법 및 이를 수행하는 컴퓨터 장치
IL320357A (en) 2022-10-20 2025-06-01 Seegene Inc Method of guiding multiple detailed performance experiments required for developing reagent for detecting target nucleic acid molecule, and organizing experiment result record sheets
KR20250124154A (ko) 2023-01-05 2025-08-19 주식회사 씨젠 분자진단 분석 결과의 획득 방법, 분자진단 분석 결과를 추정하는 모델의 획득 방법 및 이를 수행하는 컴퓨터 장치
WO2026005528A1 (ko) * 2024-06-28 2026-01-02 주식회사 씨젠 시료 내 타겟 분석물에 대한 데이터 세트의 보정 방법 및 장치

Family Cites Families (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5766889A (en) * 1994-06-08 1998-06-16 The Perkin-Elmer Corporation Method for determining the characteristics of the concentration growth of target nucleic acid molecules in polymerase chain reaction sample
EP1033411B1 (en) 1996-06-04 2006-02-22 University of Utah Research Foundation Fluorescent donor-acceptor pair
US6783934B1 (en) 2000-05-01 2004-08-31 Cepheid, Inc. Methods for quantitative analysis of nucleic acid amplification reaction
US7228237B2 (en) 2002-02-07 2007-06-05 Applera Corporation Automatic threshold setting and baseline determination for real-time PCR
EP1335028B1 (en) 2002-02-12 2008-01-16 University of Utah Research Foundation Multi-test analysis of real-time nucleic acid amplifications
US7647187B2 (en) * 2005-05-13 2010-01-12 Bio-Rad Laboratories, Inc. Identifying statistically linear data
JP5091122B2 (ja) * 2005-05-13 2012-12-05 バイオ−ラッド ラボラトリーズ,インコーポレイティド 統計的線形データの同定
US7720611B2 (en) * 2005-05-13 2010-05-18 Bio-Rad Laboratories, Inc. Baselining amplification data
JP5313663B2 (ja) * 2005-05-13 2013-10-09 バイオ−ラッド ラボラトリーズ,インコーポレイティド 増幅データのベースライン化
EP1798650A1 (en) * 2005-12-19 2007-06-20 Roche Diagnostics GmbH Analytical method and instrument
US7668663B2 (en) 2005-12-20 2010-02-23 Roche Molecular Systems, Inc. Levenberg-Marquardt outlier spike removal method
WO2010030686A1 (en) * 2008-09-09 2010-03-18 Bio-Rad Laboratories, Inc. Multi-stage, regression-based pcr analysis system

Cited By (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105755159A (zh) * 2016-05-13 2016-07-13 苏州国科闻普生物科技有限公司 自动快速判别荧光定量pcr结果的方法
CN106908655A (zh) * 2017-03-06 2017-06-30 广东顺德工业设计研究院(广东顺德创新设计研究院) 光电信号峰值检测方法与系统
CN106908655B (zh) * 2017-03-06 2019-06-14 广东顺德工业设计研究院(广东顺德创新设计研究院) 光电信号峰值检测方法与系统
CN111149170A (zh) * 2017-09-28 2020-05-12 Seegene株式会社 分析试样内靶分析物的方法及装置
CN111433372A (zh) * 2017-10-19 2020-07-17 生物辐射实验室股份有限公司 具有光致发光的非常规和/或反向变化的数字扩增试验
CN111433372B (zh) * 2017-10-19 2024-01-26 生物辐射实验室股份有限公司 具有光致发光的非常规和/或反向变化的数字扩增试验
CN112685686B (zh) * 2020-08-25 2021-08-06 杭州博日科技股份有限公司 一种熔解曲线平滑方法
CN112685686A (zh) * 2020-08-25 2021-04-20 杭州博日科技股份有限公司 一种熔解曲线平滑方法
CN114058683A (zh) * 2021-11-17 2022-02-18 杭州优思达生物技术有限公司 一种核酸扩增结果判定方法
CN114065120A (zh) * 2022-01-14 2022-02-18 深圳市刚竹医疗科技有限公司 测定pcr的直线-s形生长曲线的循环阈值的方法
CN114065120B (zh) * 2022-01-14 2022-04-19 深圳市刚竹医疗科技有限公司 测定pcr的直线-s形生长曲线的循环阈值的方法
WO2024153009A1 (zh) * 2023-01-19 2024-07-25 江苏普瑞悉恩生物科技有限公司 核酸样本检测定量方法及装置、存储介质及电子设备
CN116564411A (zh) * 2023-07-12 2023-08-08 广州普世君安生物科技有限公司 等温扩增核酸的结果判定方法、系统、设备及存储介质
CN116564411B (zh) * 2023-07-12 2023-09-29 广州普世君安生物科技有限公司 等温扩增核酸的结果判定方法、系统、设备及存储介质

Also Published As

Publication number Publication date
US20100070190A1 (en) 2010-03-18
WO2010030686A1 (en) 2010-03-18
JP2012502378A (ja) 2012-01-26
US8560247B2 (en) 2013-10-15
EP2326949A1 (en) 2011-06-01
US8285489B2 (en) 2012-10-09
US20140032126A1 (en) 2014-01-30
US9442891B2 (en) 2016-09-13
JP5166608B2 (ja) 2013-03-21
CA2736243A1 (en) 2010-03-18
US20130018593A1 (en) 2013-01-17

Similar Documents

Publication Publication Date Title
CN102187215A (zh) 基于回归的多级pcr分析系统
US20250182855A1 (en) Methods and systems for visualizing and evaluating data
EP2107470B1 (en) PCR elbow determination using quadratic test for curvature analysis of a double sigmoid
US8265883B2 (en) Systems and methods for baseline correction using non-linear normalization
JP6129485B2 (ja) 情報システムを用いて反応を解析する方法およびシステム
US20070143385A1 (en) PCR elbow determination by use of a double sigmoid function curve fit with the Levenberg-Marquardt algorithm and normalization
EP1770172B1 (en) Determination of the cycle threshold (Ct) value in a PCR amplification curve by cluster analysis with variable cluster endpoint
JP4634365B2 (ja) ダブルシグモイドの曲率分析を使用したpcrのエルボー決定
JP6907388B2 (ja) 核酸増幅反応を分析するための分析方法およびシステム
CN105849736A (zh) 实时pcr信号中的跳跃的检测和校正
CA2571399C (en) Temperature step correction with double sigmoid levenberg-marquardt and robust linear regression
CA2538798C (en) Pcr elbow determination by rotational transform
CN101292245B (zh) 识别统计线性数据的设备和方法
EP4648054A1 (en) Method for obtaining molecular diagnostic analysis results, method for obtaining model to estimate molecular diagnostic analysis results, and computer device for performing same
US7647187B2 (en) Identifying statistically linear data
JP5014147B2 (ja) 特にpcrによる、核酸の個体群の初期個体量を見積もりするための方法、設備、およびコンピュータプログラム
JP2008521104A5 (https=)

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
C10 Entry into substantive examination
SE01 Entry into force of request for substantive examination
AD01 Patent right deemed abandoned

Effective date of abandoning: 20110914

C20 Patent right or utility model deemed to be abandoned or is abandoned