CA2696652C - Multiplex quantitative nucleic acid amplification and melting assay - Google Patents

Multiplex quantitative nucleic acid amplification and melting assay Download PDF

Info

Publication number
CA2696652C
CA2696652C CA2696652A CA2696652A CA2696652C CA 2696652 C CA2696652 C CA 2696652C CA 2696652 A CA2696652 A CA 2696652A CA 2696652 A CA2696652 A CA 2696652A CA 2696652 C CA2696652 C CA 2696652C
Authority
CA
Canada
Prior art keywords
nucleic acid
target nucleic
melting
labeled
amplification
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CA2696652A
Other languages
English (en)
French (fr)
Other versions
CA2696652A1 (en
Inventor
Russell Higuchi
Cherie Holcomb
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Individual
Original Assignee
F Hoffmann La Roche AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by F Hoffmann La Roche AG filed Critical F Hoffmann La Roche AG
Publication of CA2696652A1 publication Critical patent/CA2696652A1/en
Application granted granted Critical
Publication of CA2696652C publication Critical patent/CA2696652C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
CA2696652A 2009-03-10 2010-03-09 Multiplex quantitative nucleic acid amplification and melting assay Active CA2696652C (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US12/400,966 2009-03-10
US12/400,966 US8039215B2 (en) 2009-03-10 2009-03-10 Multiplex quantitative nucleic acid amplification and melting assay

Publications (2)

Publication Number Publication Date
CA2696652A1 CA2696652A1 (en) 2010-09-10
CA2696652C true CA2696652C (en) 2015-09-08

Family

ID=42224157

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2696652A Active CA2696652C (en) 2009-03-10 2010-03-09 Multiplex quantitative nucleic acid amplification and melting assay

Country Status (6)

Country Link
US (1) US8039215B2 (OSRAM)
EP (1) EP2228454B1 (OSRAM)
JP (1) JP5745774B2 (OSRAM)
CN (1) CN101831496B (OSRAM)
CA (1) CA2696652C (OSRAM)
ES (1) ES2589102T3 (OSRAM)

Families Citing this family (37)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP5686493B2 (ja) 2003-01-24 2015-03-18 ユニバーシティ・オブ・ユタUniversity Of Utah テロメアの長さを決定することによって死亡の危険性を予測する方法
US9222128B2 (en) 2011-03-18 2015-12-29 Bio-Rad Laboratories, Inc. Multiplexed digital assays with combinatorial use of signals
US9921154B2 (en) 2011-03-18 2018-03-20 Bio-Rad Laboratories, Inc. Multiplexed digital assays
US8951939B2 (en) * 2011-07-12 2015-02-10 Bio-Rad Laboratories, Inc. Digital assays with multiplexed detection of two or more targets in the same optical channel
CA2748265C (en) * 2008-12-22 2018-04-03 University Of Utah Research Foundation Monochrome multiplex quantitative pcr
US8039215B2 (en) 2009-03-10 2011-10-18 Roche Molecular Systems, Inc. Multiplex quantitative nucleic acid amplification and melting assay
CN102576389B (zh) * 2009-10-21 2016-08-03 皇家飞利浦电子股份有限公司 用于扩增反应的分析工具
JP6059453B2 (ja) * 2011-05-31 2017-01-11 アークレイ株式会社 同一又は近傍の検出波長を有する蛍光色素で修飾された複数のオリゴヌクレオチドを用いて、1種類の波長で複数の遺伝子多型を検出する方法
KR101483576B1 (ko) * 2011-10-31 2015-01-21 아크레이 가부시키가이샤 유전자 존재량의 측정 방법
EP2780481A4 (en) * 2011-11-16 2015-10-14 Canon Us Life Sciences Inc DETECTION OF MUTATIONS IN HIGHLY HOMOLOGOUS GENOME REGIONS
WO2013113748A1 (en) * 2012-02-02 2013-08-08 Primer Design Ltd Method for detecting and genotyping target nucleic acid
KR101912401B1 (ko) 2012-02-03 2018-10-26 캘리포니아 인스티튜트 오브 테크놀로지 다중화된 생화학적 분석에서의 시그널 인코딩 및 디코딩
EP2880184B1 (en) 2012-08-03 2021-03-31 California Institute of Technology Multiplexing and quantification in pcr with reduced hardware and requirements
US9970052B2 (en) 2012-08-23 2018-05-15 Bio-Rad Laboratories, Inc. Digital assays with a generic reporter
CN102952794B (zh) * 2012-09-05 2015-02-25 张家港蓝苏生物工程有限公司 靶向基因dna分子探针的制备方法
EP3967773A1 (en) * 2012-09-10 2022-03-16 BioFire Diagnostics, LLC Multiple amplification cycle detection
JP2016508733A (ja) * 2013-03-13 2016-03-24 シージーン アイエヌシー メルティングピーク分析を利用したターゲット核酸配列の定量
ES2762860T3 (es) 2013-05-22 2020-05-26 Telomere Diagnostics Inc Medidas de abundancia de telómeros cortos
WO2015147370A1 (en) * 2014-03-28 2015-10-01 Seegene, Inc. Detection of target nucleic acid sequences using different detection temperatures
EP3034617A1 (en) 2014-12-16 2016-06-22 Marcos Isamat Riviere Method for the simultaneous identification of multiple same-genome fragments or multiple fragments from different genomes using a PCR-technique
CA2971169A1 (en) 2014-12-30 2016-07-07 Telomere Diagnostics, Inc. Multiplex quantitative pcr
AU2016269875B2 (en) * 2015-06-04 2019-05-09 Mizuho Medy Co., Ltd. Kit for together detecting multiple target acids differing from each other and detection method using the same
WO2017173035A1 (en) 2016-04-01 2017-10-05 Chromacode Inc. Competitive probes for engineering signal generation
WO2017218777A1 (en) 2016-06-17 2017-12-21 California Institute Of Technology Nucleic acid reactions and related methods and compositions
WO2018027185A1 (en) * 2016-08-04 2018-02-08 Duke University Compositions and methods for measuring bacterial growth
EP3512959B1 (en) 2016-09-15 2021-08-11 Roche Diagnostics GmbH Methods for performing multiplexed pcr
CN106868140B (zh) * 2017-03-02 2022-10-18 北京酷搏科技有限公司 多重荧光定量pcr的方法
US20190093155A1 (en) * 2017-05-25 2019-03-28 Roche Molecular Systems, Inc. Multiplex Nucleic Acid Amplification Assay
CN111433372B (zh) * 2017-10-19 2024-01-26 生物辐射实验室股份有限公司 具有光致发光的非常规和/或反向变化的数字扩增试验
WO2019144107A1 (en) * 2018-01-22 2019-07-25 Luminex Corporation Methods and compositions for discrete melt analysis
US12454720B2 (en) 2018-04-17 2025-10-28 ChromaCode, Inc. Methods and systems for multiplex analysis
CN112004941B (zh) 2018-04-20 2023-10-27 Seegene株式会社 用于检测样品中的多个靶核酸序列的方法及装置
US12203129B2 (en) 2018-07-03 2025-01-21 ChromaCode, Inc. Formulations and signal encoding and decoding methods for massively multiplexed biochemical assays
US20230068047A1 (en) * 2021-08-19 2023-03-02 Luminex Corporation Digital amplification assay analysis method
WO2023125552A1 (zh) * 2021-12-27 2023-07-06 迈克生物股份有限公司 对靶标核酸进行检测的方法
EP4547758A1 (en) * 2022-06-29 2025-05-07 Life Technologies Corporation Multiplex dye compounds
CN117701689A (zh) * 2022-09-14 2024-03-15 迈克生物股份有限公司 多重pcr反应体系

Family Cites Families (33)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4965188A (en) 1986-08-22 1990-10-23 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme
DE3529478A1 (de) 1985-08-16 1987-02-19 Boehringer Mannheim Gmbh 7-desaza-2'desoxyguanosin-nukleotide, verfahren zu deren herstellung und deren verwendung zur nukleinsaeure-sequenzierung
US5374553A (en) 1986-08-22 1994-12-20 Hoffmann-La Roche Inc. DNA encoding a thermostable nucleic acid polymerase enzyme from thermotoga maritima
US5466591A (en) 1986-08-22 1995-11-14 Hoffmann-La Roche Inc. 5' to 3' exonuclease mutations of thermostable DNA polymerases
US5455170A (en) 1986-08-22 1995-10-03 Hoffmann-La Roche Inc. Mutated thermostable nucleic acid polymerase enzyme from Thermus species Z05
US5405774A (en) 1986-08-22 1995-04-11 Hoffmann-La Roche Inc. DNA encoding a mutated thermostable nucleic acid polymerase enzyme from thermus species sps17
US5795762A (en) 1986-08-22 1998-08-18 Roche Molecular Systems, Inc. 5' to 3' exonuclease mutations of thermostable DNA polymerases
US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
ES2152923T3 (es) 1990-09-28 2001-02-16 Hoffmann La Roche Enzima polimerasa de acido nucleico termoestable purificada, de thermosipho africanus.
JPH04234422A (ja) 1990-10-31 1992-08-24 Internatl Business Mach Corp <Ibm> 二重硬化エポキシバックシール処方物
DE4234086A1 (de) 1992-02-05 1993-08-12 Diagen Inst Molekularbio Verfahren zur bestimmung von in vitro amplifizierten nukleinsaeuresequenzen
US5538848A (en) 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
GB9513271D0 (en) 1995-06-29 1995-09-06 Johnson James G Stress free fish harvester
US5773258A (en) 1995-08-25 1998-06-30 Roche Molecular Systems, Inc. Nucleic acid amplification using a reversibly inactivated thermostable enzyme
DK1179600T3 (da) 1996-06-04 2005-09-05 Univ Utah Res Found Overvågning af hybridisering under PCR
US6427156B1 (en) 1997-01-21 2002-07-30 Xilinx, Inc. Configurable logic block with AND gate for efficient multiplication in FPGAS
US6228628B1 (en) 1997-07-09 2001-05-08 Roche Molecular Systems Mutant chimeric DNA polymerase
US6140054A (en) 1998-09-30 2000-10-31 University Of Utah Research Foundation Multiplex genotyping using fluorescent hybridization probes
US6472156B1 (en) 1999-08-30 2002-10-29 The University Of Utah Homogeneous multiplex hybridization analysis by color and Tm
US20040053230A1 (en) 2001-03-07 2004-03-18 Schaffer Michael Edward Real time quantitative pcr with intercalating dye for single and multiplex target dna
US7019129B1 (en) * 2000-05-09 2006-03-28 Biosearch Technologies, Inc. Dark quenchers for donor-acceptor energy transfer
DE60213730T2 (de) 2001-08-31 2007-08-16 The University Of Utah Research Foundation, Salt Lake City Echtzeit-Quantifizierung mit internen Standards
WO2004074447A2 (en) 2003-02-18 2004-09-02 Applera Corporation Compositions and methods for multiplex analysis of polynucleotides
US20050053950A1 (en) * 2003-09-08 2005-03-10 Enrique Zudaire Ubani Protocol and software for multiplex real-time PCR quantification based on the different melting temperatures of amplicons
US7700282B2 (en) * 2004-10-11 2010-04-20 Epigenomics Ag Method for the carry-over protection in DNA amplification systems targeting methylation analysis achieved by a modified pre-treatment of nucleic acids
EP2927238B1 (en) * 2004-10-18 2018-01-17 Brandeis University Methods for LATE amplification and sequencing of a nucleic acid
US8067208B2 (en) 2005-06-30 2011-11-29 Roche Molecular Systems, Inc. Probes and methods for hepatitis C virus typing using multidimensional probe analysis
JP4815980B2 (ja) * 2005-10-05 2011-11-16 株式会社島津製作所 融解曲線測定による遺伝子増幅産物の解析方法
WO2009042728A1 (en) 2007-09-24 2009-04-02 Allelogic Biosciences Corporation Detection and /or quantification of nucleic acids
EP2116614A1 (en) 2008-05-06 2009-11-11 Qiagen GmbH Simultaneous detection of multiple nucleic acid sequences in a reaction
US8039215B2 (en) 2009-03-10 2011-10-18 Roche Molecular Systems, Inc. Multiplex quantitative nucleic acid amplification and melting assay

Also Published As

Publication number Publication date
ES2589102T3 (es) 2016-11-10
US20100233686A1 (en) 2010-09-16
CN101831496A (zh) 2010-09-15
JP5745774B2 (ja) 2015-07-08
US8039215B2 (en) 2011-10-18
EP2228454A1 (en) 2010-09-15
CA2696652A1 (en) 2010-09-10
JP2010207220A (ja) 2010-09-24
CN101831496B (zh) 2017-04-12
EP2228454B1 (en) 2016-06-22

Similar Documents

Publication Publication Date Title
CA2696652C (en) Multiplex quantitative nucleic acid amplification and melting assay
JP4602945B2 (ja) 核酸の同定のための後pcr特性の複合した非対称pcr
CA2747068C (en) Nucleic acid amplification with allele-specific suppression of sequence variants
US20100227326A1 (en) Detection System
US20100143901A1 (en) Nuclease-Free Real-Time Detection of Nucleic Acids
US20120070831A1 (en) Amplification of Distant Nucleic Acid Targets Using Engineered Primers
EP2071041A1 (en) Nucleic acid detection probe
CA2733653C (en) Detection of target variants using a fluorescent label and a soluble quencher
JP2009159945A (ja) 核酸検出用プローブ
US9260746B2 (en) Photoinduced electron transfer (PET) primer for nucleic acid amplification
KR20090052227A (ko) 경쟁적 증폭 반응을 이용하여 표적 핵산을 검출하는 방법

Legal Events

Date Code Title Description
EEER Examination request

Effective date: 20140926