CA2506574A1 - One step real-time rt pcr kits for the universal detection of organisms in industrial products - Google Patents
One step real-time rt pcr kits for the universal detection of organisms in industrial products Download PDFInfo
- Publication number
- CA2506574A1 CA2506574A1 CA002506574A CA2506574A CA2506574A1 CA 2506574 A1 CA2506574 A1 CA 2506574A1 CA 002506574 A CA002506574 A CA 002506574A CA 2506574 A CA2506574 A CA 2506574A CA 2506574 A1 CA2506574 A1 CA 2506574A1
- Authority
- CA
- Canada
- Prior art keywords
- seq
- primer
- probe
- reverse
- fungus
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
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- JVIPLYCGEZUBIO-UHFFFAOYSA-N 2-(4-fluorophenyl)-1,3-dioxoisoindole-5-carboxylic acid Chemical compound O=C1C2=CC(C(=O)O)=CC=C2C(=O)N1C1=CC=C(F)C=C1 JVIPLYCGEZUBIO-UHFFFAOYSA-N 0.000 description 1
- OALHHIHQOFIMEF-UHFFFAOYSA-N 3',6'-dihydroxy-2',4',5',7'-tetraiodo-3h-spiro[2-benzofuran-1,9'-xanthene]-3-one Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC(I)=C(O)C(I)=C1OC1=C(I)C(O)=C(I)C=C21 OALHHIHQOFIMEF-UHFFFAOYSA-N 0.000 description 1
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- RGWHQCVHVJXOKC-SHYZEUOFSA-J dCTP(4-) Chemical compound O=C1N=C(N)C=CN1[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)C1 RGWHQCVHVJXOKC-SHYZEUOFSA-J 0.000 description 1
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Mycology (AREA)
- Botany (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US42532702P | 2002-11-12 | 2002-11-12 | |
| US60/425,327 | 2002-11-12 | ||
| PCT/IB2003/005312 WO2004044247A2 (en) | 2002-11-12 | 2003-11-03 | One step real-time rt pcr kits for the universal detection of organisms in industrial products |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2506574A1 true CA2506574A1 (en) | 2004-05-27 |
Family
ID=32312970
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA002506574A Abandoned CA2506574A1 (en) | 2002-11-12 | 2003-11-03 | One step real-time rt pcr kits for the universal detection of organisms in industrial products |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20060257871A1 (https=) |
| EP (1) | EP1560932A2 (https=) |
| JP (1) | JP2006505275A (https=) |
| CN (1) | CN1711357A (https=) |
| AU (1) | AU2003276634A1 (https=) |
| CA (1) | CA2506574A1 (https=) |
| NO (1) | NO20052651L (https=) |
| WO (1) | WO2004044247A2 (https=) |
Families Citing this family (43)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2004060278A2 (en) | 2002-12-06 | 2004-07-22 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of pathogens in humans and animals |
| US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
| US20040121309A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
| US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
| US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
| US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
| US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
| US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US8242254B2 (en) | 2003-09-11 | 2012-08-14 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
| US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
| ES2641832T3 (es) | 2004-05-24 | 2017-11-14 | Ibis Biosciences, Inc. | Espectrometría de masas con filtración de iones selectiva por establecimiento de umbrales digitales |
| US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
| US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
| WO2006135400A2 (en) | 2004-08-24 | 2006-12-21 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of recombinant organisms |
| US10174386B2 (en) * | 2005-01-31 | 2019-01-08 | Kabushiki Kaisha Yakult Honsha | Method of quantitatively analyzing microorganism targeting rRNA |
| JP4788150B2 (ja) * | 2005-02-10 | 2011-10-05 | 栗田工業株式会社 | 製紙工程における付着物の分析方法 |
| US20060205040A1 (en) | 2005-03-03 | 2006-09-14 | Rangarajan Sampath | Compositions for use in identification of adventitious viruses |
| US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
| WO2006102772A1 (en) | 2005-04-01 | 2006-10-05 | Smartgene Gmbh | PRIMERS FOR AMPLIFICATION AND SEQUENCING OF EUBACTERIAL 16S rDNA FOR IDENTIFICATION |
| JP2009502137A (ja) | 2005-07-21 | 2009-01-29 | アイシス ファーマシューティカルズ インコーポレイティッド | 核酸変種の迅速な同定および定量のための方法 |
| US9149473B2 (en) | 2006-09-14 | 2015-10-06 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
| EP2126132B1 (en) | 2007-02-23 | 2013-03-20 | Ibis Biosciences, Inc. | Methods for rapid foresnsic dna analysis |
| WO2008151023A2 (en) | 2007-06-01 | 2008-12-11 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
| US7595164B2 (en) | 2007-12-26 | 2009-09-29 | Gen-Probe Incorporated | Compositions and methods to detect Candida albicans nucleic acid |
| US8550694B2 (en) | 2008-09-16 | 2013-10-08 | Ibis Biosciences, Inc. | Mixing cartridges, mixing stations, and related kits, systems, and methods |
| WO2010033625A1 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Microplate handling systems and related computer program products and methods |
| US8148163B2 (en) | 2008-09-16 | 2012-04-03 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
| CN102209794A (zh) * | 2008-11-14 | 2011-10-05 | 巴克斯特国际公司 | 用于生物样本中低丰度rna种类特异性检测的方法 |
| EP2396803A4 (en) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | IONIZATION PROBE ASSEMBLIES |
| EP2454000A4 (en) | 2009-07-17 | 2016-08-10 | Ibis Biosciences Inc | SYSTEMS FOR IDENTIFYING BIOLOGICAL SUBSTANCES |
| US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
| EP2488656B1 (en) | 2009-10-15 | 2015-06-03 | Ibis Biosciences, Inc. | Multiple displacement amplification |
| EP2529034B1 (en) * | 2010-01-26 | 2018-01-24 | The Translational Genomics Research Institute | Methods for the detection of fungus |
| WO2012135620A2 (en) * | 2011-04-01 | 2012-10-04 | Advandx. Inc. | Molecular gram stain |
| KR102084217B1 (ko) * | 2013-07-24 | 2020-03-03 | 솔젠트 (주) | 중합효소연쇄반응 및 실시간중합효소연쇄반응을 이용한 세포치료제 또는 생물학적 의약품에 오염되는 세균을 검출하는 방법 및 이 방법에 사용하기 위한 키트 |
| EP3189159A4 (en) * | 2014-06-26 | 2018-05-30 | University of Florida Research Foundation, Inc. | Rapid detection of infectious agents |
| TWI735433B (zh) * | 2015-03-27 | 2021-08-11 | 美商再生元醫藥公司 | 偵測生物污染物之組成物及方法 |
| US10662484B1 (en) | 2016-03-24 | 2020-05-26 | Bench in a Box, LLC | Two universal duplex primer sets and a combined real-time PCR and high resolution melt analysis assay for the amplification of gram-positive and gram-negative bacteria |
| BR112019002679A2 (pt) * | 2016-08-08 | 2019-05-14 | Karius, Inc. | redução de sinal de ácidos nucleicos contaminantes |
| MX2020009985A (es) * | 2018-03-26 | 2020-10-12 | Buckman Laboratories Int Inc | Metodos para cuantificar la carga biologica en sustancias. |
Family Cites Families (12)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4683195A (en) * | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US4683202A (en) * | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US4800159A (en) * | 1986-02-07 | 1989-01-24 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences |
| US6093538A (en) * | 1992-05-06 | 2000-07-25 | Gen-Probe Incorporated | Nucleic acid probes to ureaplasma |
| US5593836A (en) * | 1993-05-14 | 1997-01-14 | Niemiec; John T. | Primers and probes for detecting Pneumocystis carinii |
| US6406891B1 (en) * | 1998-09-28 | 2002-06-18 | Board Of Regents, The University Of Texas System | Dual RT procedure for cDNA synthesis |
| EP1174520A3 (en) * | 2000-07-18 | 2004-02-18 | Degussa AG | Method for monitoring a fermentation process using an expression array |
| US20040005555A1 (en) * | 2000-08-31 | 2004-01-08 | Rothman Richard E. | Molecular diagnosis of bactermia |
| AU2002237982A1 (en) * | 2001-01-30 | 2002-08-12 | Vertex Pharmaceuticals Incorporated | A quantitative assay for nucleic acids |
| US6699670B2 (en) * | 2001-03-01 | 2004-03-02 | The Johns Hopkins University | Quantitative assay for the simultaneous detection and speciation of bacterial infections |
| US20020160401A1 (en) * | 2001-03-29 | 2002-10-31 | Yasuyuki Nozaki | Biochip and method of designing probes |
| US6521350B2 (en) * | 2001-06-18 | 2003-02-18 | Alfred E. Mann Foundation For Scientific Research | Application and manufacturing method for a ceramic to metal seal |
-
2003
- 2003-11-03 US US10/534,647 patent/US20060257871A1/en not_active Abandoned
- 2003-11-03 AU AU2003276634A patent/AU2003276634A1/en not_active Abandoned
- 2003-11-03 JP JP2004551109A patent/JP2006505275A/ja not_active Withdrawn
- 2003-11-03 EP EP03811045A patent/EP1560932A2/en not_active Withdrawn
- 2003-11-03 CA CA002506574A patent/CA2506574A1/en not_active Abandoned
- 2003-11-03 WO PCT/IB2003/005312 patent/WO2004044247A2/en not_active Ceased
- 2003-11-03 CN CN200380103046.6A patent/CN1711357A/zh active Pending
-
2005
- 2005-06-02 NO NO20052651A patent/NO20052651L/no not_active Application Discontinuation
Also Published As
| Publication number | Publication date |
|---|---|
| NO20052651D0 (no) | 2005-06-02 |
| WO2004044247A2 (en) | 2004-05-27 |
| AU2003276634A1 (en) | 2004-06-03 |
| NO20052651L (no) | 2005-06-02 |
| US20060257871A1 (en) | 2006-11-16 |
| EP1560932A2 (en) | 2005-08-10 |
| JP2006505275A (ja) | 2006-02-16 |
| WO2004044247A3 (en) | 2004-08-26 |
| CN1711357A (zh) | 2005-12-21 |
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