AR077844A1 - Metodos, cebadores, sondas y conjuntos de elementos para detectar mutaciones braf - Google Patents

Metodos, cebadores, sondas y conjuntos de elementos para detectar mutaciones braf

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Publication number
AR077844A1
AR077844A1 ARP100102935A ARP100102935A AR077844A1 AR 077844 A1 AR077844 A1 AR 077844A1 AR P100102935 A ARP100102935 A AR P100102935A AR P100102935 A ARP100102935 A AR P100102935A AR 077844 A1 AR077844 A1 AR 077844A1
Authority
AR
Argentina
Prior art keywords
braf
seq
sample
sequence
mutant
Prior art date
Application number
ARP100102935A
Other languages
English (en)
Inventor
Craig Stephens
Kathleen Danenberg
Original Assignee
Response Genetics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Response Genetics Inc filed Critical Response Genetics Inc
Publication of AR077844A1 publication Critical patent/AR077844A1/es

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/106Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/112Disease subtyping, staging or classification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Pathology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Paints Or Removers (AREA)

Abstract

Métodos, cebadores y sondas de utilidad para detectar la presencia de secuencias BRAF mutantes en una muestra, específicamente para detectar la presencia de las mutaciones BRAF V600E, V600D, V600K y V600M, por lo que es posible usarlas para diagnosticar diversos canceres. Reivindicacion 1: Un método para detectar la presencia de una mutacion BRAF en una muestra, caracterizado porque comprende (a) aislar un ácido nucleico de dicha muestra, donde la muestra comprende secuencias de ADN; (b) realizar una reaccion de amplificacion con las secuencias de ADN de dicha muestra, donde dicha reaccion de amplificacion comprende un primer cebador capaz de alinearse específicamente con una secuencia BRAF mutante en una primera posicion en una secuencia de AUN BRAF, donde dicho primer cebador es SEQ ID Ns 1, SEQ ID Ns 2, SEQ ID Ns 3, SEQ ID Ns 4, SEQ ID Ns 5, SEQ ID Ns 6, SEQ ID Ns 7, SEQ ID Ns 8 o SEQ ID Ns 9, y un segundo cebador capaz de alinearse específicamente en una segunda posicion en una secuencia de ADN BRAF, donde dichos cebadores, el primero y el segundo, se alinean con las distintas cadenas de la secuencia de ADN BRAF de cadena doble, donde la reaccion de amplificacion permite generar un producto de amplificacion específico para BRAF mutante cuando las secuencias de ADN de la muestra comprenden una secuencia de ADN BRAF que comprende una secuencia mutante en dicha primera posicion de dicha secuencia de AUN BRAF; y (c) visualizar los productos de amplificacion generados en dicha reaccion de amplificacion, donde la deteccion de un producto de amplificacion especifico para BRAF mutante es un indicador positivo de una mutacion BRAF en dicha muestra.
ARP100102935A 2009-08-11 2010-08-11 Metodos, cebadores, sondas y conjuntos de elementos para detectar mutaciones braf AR077844A1 (es)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US23305409P 2009-08-11 2009-08-11
US23707809P 2009-08-26 2009-08-26
US30179010P 2010-02-05 2010-02-05

Publications (1)

Publication Number Publication Date
AR077844A1 true AR077844A1 (es) 2011-09-28

Family

ID=43586772

Family Applications (1)

Application Number Title Priority Date Filing Date
ARP100102935A AR077844A1 (es) 2009-08-11 2010-08-11 Metodos, cebadores, sondas y conjuntos de elementos para detectar mutaciones braf

Country Status (13)

Country Link
US (1) US20140248614A1 (es)
EP (1) EP2464751B1 (es)
JP (1) JP2013501523A (es)
KR (1) KR20120099630A (es)
CN (1) CN102575295B (es)
AR (1) AR077844A1 (es)
AU (1) AU2010282632A1 (es)
CA (1) CA2770716A1 (es)
HK (1) HK1172931A1 (es)
IL (1) IL218021A0 (es)
NZ (1) NZ598166A (es)
TW (1) TW201111517A (es)
WO (1) WO2011019704A2 (es)

Families Citing this family (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP6153758B2 (ja) * 2012-04-20 2017-06-28 アークレイ株式会社 多型検出用プローブ、多型検出方法、薬効判定方法及び多型検出用キット
US10077474B2 (en) 2012-05-29 2018-09-18 Abbott Molecular, Inc. Method of designing primers, method of detecting single nucleotide polymorphisms (SNPs), method of distinguishing SNPs, and related primers, detectable oligonucleotides, and kits
CN102816851A (zh) * 2012-08-29 2012-12-12 苏州旷远生物分子技术有限公司 用于检测braf基因v600e突变的引物、探针、试剂盒及方法
CN102876784B (zh) * 2012-09-13 2014-11-19 周宏灏 焦磷酸测序法检测B-raf基因多态性的试剂盒及方法
EP2711432A1 (en) * 2012-09-21 2014-03-26 Genomica S.A.U. Method for detection of BRAF and PI3K mutations
CA3077539C (en) * 2012-12-27 2023-09-12 Quest Diagnostics Investments Incorporated Ddr2 mutations as targetable features of melanoma or basal cell carcinoma
CN103103269B (zh) * 2013-01-18 2015-07-15 陕西佰美基因股份有限公司 一种基于探针熔解技术准确检测braf基因突变的方法
JP2016512041A (ja) * 2013-03-15 2016-04-25 アボツト・モレキユラー・インコーポレイテツド 多重対立遺伝子の検出
KR101378920B1 (ko) * 2013-04-18 2014-03-27 주식회사 현일바이오 Braf 돌연변이의 선택적 검출 방법 및 이를 이용한 키트
CN105705655A (zh) * 2013-08-14 2016-06-22 佳根曼斯菲尔德有限公司 用于对nras和braf核酸进行多重分析的组合物及方法
CN104017887A (zh) * 2014-06-18 2014-09-03 广州好芝生物科技有限公司 人类braf基因突变检测引物对和探针及其试剂盒
KR20190095523A (ko) * 2014-07-11 2019-08-14 익스프레션 패톨로지, 인크. 세린/트레오닌-단백질 키나제 수용체 B-raf(BRAF)에 대한 SRM/MRM 검정
CN105400900A (zh) * 2015-12-29 2016-03-16 杭州迪安生物技术有限公司 焦磷酸测序技术检测braf基因v600e微量突变试剂盒及其应用
CN105861691A (zh) * 2016-05-06 2016-08-17 北京晋祺生物科技有限公司 一种braf基因突变检测的引物组合物、试剂盒及方法
US20200360537A1 (en) * 2017-06-29 2020-11-19 Korea Advanced Institute Of Science And Technology A ganglioglioma-induced animal model and a method for diagnosing and treating ganglioglioma and related diseases
KR20190038464A (ko) * 2017-09-29 2019-04-08 (재)록원바이오융합연구재단 Ras/braf 돌연변이 검출용 조성물 및 이를 포함하는 키트
CN109161594A (zh) * 2018-08-17 2019-01-08 中山大学达安基因股份有限公司 一种检测braf基因突变的方法及其试剂盒
KR20220079492A (ko) * 2020-12-04 2022-06-13 주식회사 제노픽스 폐암 유전자 돌연변이 초고감도 선택적 증폭 방법 및 이를 위한 조성물

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2004337120A (ja) * 2003-05-19 2004-12-02 Chang Gung Univ 膀胱癌再発検査方法
US7745125B2 (en) * 2004-06-28 2010-06-29 Roche Molecular Systems, Inc. 2′-terminator related pyrophosphorolysis activated polymerization
CN101487051B (zh) * 2009-02-24 2011-07-20 广州益善生物技术有限公司 Braf基因突变的检测探针、液相芯片及其检测方法

Also Published As

Publication number Publication date
JP2013501523A (ja) 2013-01-17
TW201111517A (en) 2011-04-01
WO2011019704A2 (en) 2011-02-17
HK1172931A1 (zh) 2013-05-03
EP2464751B1 (en) 2017-05-24
EP2464751A4 (en) 2013-07-03
EP2464751A2 (en) 2012-06-20
AU2010282632A1 (en) 2012-03-08
IL218021A0 (en) 2012-04-30
CN102575295B (zh) 2016-02-17
US20140248614A1 (en) 2014-09-04
CA2770716A1 (en) 2011-02-17
WO2011019704A3 (en) 2011-07-07
KR20120099630A (ko) 2012-09-11
NZ598166A (en) 2014-03-28
CN102575295A (zh) 2012-07-11

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