RU2021133626A - Варианты hsd17b13 и их применения - Google Patents
Варианты hsd17b13 и их применения Download PDFInfo
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- RU2021133626A RU2021133626A RU2021133626A RU2021133626A RU2021133626A RU 2021133626 A RU2021133626 A RU 2021133626A RU 2021133626 A RU2021133626 A RU 2021133626A RU 2021133626 A RU2021133626 A RU 2021133626A RU 2021133626 A RU2021133626 A RU 2021133626A
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- guide rna
- seq
- cell
- cas protein
- hsd17b13 gene
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- 102100037429 17-beta-hydroxysteroid dehydrogenase 13 Human genes 0.000 title 1
- 101000806241 Homo sapiens 17-beta-hydroxysteroid dehydrogenase 13 Proteins 0.000 title 1
- 238000000034 method Methods 0.000 claims 47
- 108020005004 Guide RNA Proteins 0.000 claims 33
- 210000004027 cell Anatomy 0.000 claims 22
- 101150000579 Hsd17b13 gene Proteins 0.000 claims 18
- 108090000623 proteins and genes Proteins 0.000 claims 16
- 102000004169 proteins and genes Human genes 0.000 claims 16
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims 11
- 108020004414 DNA Proteins 0.000 claims 9
- 108020004707 nucleic acids Proteins 0.000 claims 9
- 102000039446 nucleic acids Human genes 0.000 claims 9
- 150000007523 nucleic acids Chemical class 0.000 claims 9
- 108091079001 CRISPR RNA Proteins 0.000 claims 6
- 239000002773 nucleotide Substances 0.000 claims 6
- 125000003729 nucleotide group Chemical group 0.000 claims 6
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 claims 6
- 230000008685 targeting Effects 0.000 claims 4
- 108091032973 (ribonucleotides)n+m Proteins 0.000 claims 3
- 238000012239 gene modification Methods 0.000 claims 3
- 230000005017 genetic modification Effects 0.000 claims 3
- 235000013617 genetically modified food Nutrition 0.000 claims 3
- 238000001727 in vivo Methods 0.000 claims 3
- 210000005229 liver cell Anatomy 0.000 claims 3
- 229940113082 thymine Drugs 0.000 claims 3
- 210000005260 human cell Anatomy 0.000 claims 2
- 230000001404 mediated effect Effects 0.000 claims 2
- 108091033409 CRISPR Proteins 0.000 claims 1
- 241000702421 Dependoparvovirus Species 0.000 claims 1
- 230000000536 complexating effect Effects 0.000 claims 1
- 238000003780 insertion Methods 0.000 claims 1
- 230000037431 insertion Effects 0.000 claims 1
- 150000002632 lipids Chemical class 0.000 claims 1
- 210000004185 liver Anatomy 0.000 claims 1
- 230000004048 modification Effects 0.000 claims 1
- 238000012986 modification Methods 0.000 claims 1
- 239000002105 nanoparticle Substances 0.000 claims 1
- 230000006780 non-homologous end joining Effects 0.000 claims 1
- 229940046166 oligodeoxynucleotide Drugs 0.000 claims 1
- 238000005215 recombination Methods 0.000 claims 1
- 230000006798 recombination Effects 0.000 claims 1
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Claims (55)
1. Способ модификации гена HSD17B13 в клетке, предусматривающий приведение генома клетки в контакт с:
(a) белком Cas; и
(b) гидовой РНК, содержащей часть РНК CRISPR (crRNA) и часть транс-активирующей РНК CRISPR (tracrRNA), причем гидовая РНК образует комплекс с белком Cas и нацелена на целевую для гидовой РНК последовательность в гене HSD17B13, причем целевая для гидовой РНК последовательность включает положение или находится в непосредственной близости от него, которое соответствует положению 12666 из SEQ ID NO: 2 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 2, и
причем белок Cas расщепляет первую целевую для гидовой РНК последовательность с образованием целенаправленной генетической модификации в гене HSD17B13.
2. Способ по п. 1, предусматривающий что ген HSD17B13 не имеет тимина, вставленного между нуклеотидами, соответствующими положениям 12665 и 12666 из SEQ ID NO: 1 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 1.
3. Способ по п. 1 или 2, предусматривающий, что:
(a) целевая для гидовой РНК последовательность содержит любую из SEQ ID NO: 226-239 и 264-268; и/или
(b) гидовая РНК содержит нацеливающий на ДНК сегмент, содержащий любую из SEQ ID NO: 1629-1642 и 1648-1652; и/или
(c) гидовая РНК содержит любую из SEQ ID NO: 706-719; 936-949; 1166-1179, 1396-1409, 725-729, 955-959, 1185-1189 и 1415-1419.
4. Способ по любому из предыдущих пунктов, предусматривающий, что целевая для гидовой РНК последовательность находится в пределах участка, соответствующего экзону 6 и/или интрону 6 из SEQ ID NO: 2 или находится в пределах участка, соответствующего экзону 6 и/или экзону 7 из SEQ ID NO: 2 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 2.
5. Способ по любому из предыдущих пунктов, предусматривающий, что целевая для гидовой РНК последовательность находится в пределах приблизительно 1000, 500, 400, 300, 200, 100, 50, 45, 40, 35, 30, 25, 20, 15, 10 или 5 нуклеотидов от положения, соответствующего положению 12666 из SEQ ID NO: 2 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 2.
6. Способ по любому из предыдущих пунктов, предусматривающий, что целевая для гидовой РНК последовательность включает положение, соответствующее положению 12666 из SEQ ID NO: 2 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 2.
7. Способ по любому из предыдущих пунктов, дополнительно предусматривающий приведение генома клетки в контакт с одной или несколькими дополнительными гидовыми РНК, причем каждая из одной или нескольких дополнительных гидовых РНК образует комплекс с белком Cas и нацелена на целевую для дополнительной гидовой РНК последовательность в гене HSD17B13.
8. Способ по любому из предыдущих пунктов, предусматривающий, что способ приводит к разрушению донорного сплайс-сайта в интроне 6 гена HSD17B13.
9. Способ по любому из предыдущих пунктов, предусматривающий, что способ приводит к потере функции гена HSD17B13.
10. Способ по любому из предыдущих пунктов, предусматривающий, что целенаправленную генетическую модификацию получают путем репарации отщепленной целевой для гидовой РНК последовательности посредством негомологичного соединения концов.
11. Способ по любому из пп. 1-9, дополнительно предусматривающий введение в клетку экзогенной донорной последовательности, которая рекомбинирует с целевым геномным локусом в гене HSD17B13 с получением целенаправленной генетической модификации.
12. Способ по п. 11, предусматривающий, что репарация гена HSD17B13 с помощью экзогенной донорной последовательностью происходит посредством вставки, опосредованной негомологичным соединением концов.
13. Способ по п. 11, предусматривающий, что репарация гена HSD17B13 с помощью экзогенной донорной последовательности происходит посредством гомологичной репарации.
14. Способ по п. 13, предусматривающий, что экзогенная донорная последовательность содержит 5’ гомологичное плечо, которое гибридизируется с целевой последовательностью, находящейся 5’ от положения, соответствующего положению 12666 из SEQ ID NO: 2, и 3’ гомологичное плечо, которое гибридизируется с целевой последовательностью, находящейся 3’ от положения, соответствующего положению 12666 из SEQ ID NO: 2, причем экзогенная донорная последовательность рекомбинирует с геном HSD17B13.
15. Способ по п. 14, предусматривающий, что экзогенная донорная последовательность дополнительно содержит вставку нуклеиновой кислоты, фланкированную 5’ гомологичным плечом и 3’ гомологичным плечом.
16. Способ по п. 15, предусматривающий, что вставка нуклеиновой кислоты содержит тимин, и причем при рекомбинации экзогенной донорной последовательности с геном HSD17B13 тимин вставляется между нуклеотидами, соответствующими положениям 12665 и 12666 из SEQ ID NO: 1 при оптимальном выравнивании гена HSD17B13 с SEQ ID NO: 1.
17. Способ по любому из пп. 11-16, предусматривающий, что экзогенная донорная последовательность составляет от приблизительно 50 нуклеотидов до приблизительно 1 т. о. в длину.
18. Способ по п. 17, предусматривающий, что экзогенная донорная последовательность составляет от приблизительно 80 нуклеотидов до приблизительно 200 нуклеотидов в длину.
19. Способ по любому из пп. 11-18, предусматривающий, что экзогенная донорная последовательность является одноцепочечным олигодезоксинуклеотидом.
20. Способ по любому из предыдущих пунктов, предусматривающий, что белок Cas представляет собой белок Cas9.
21. Способ по любому из предыдущих пунктов, причем способ предусматривает введение в клетку:
(a) белка Cas или нуклеиновой кислоты, кодирующей такой белок Cas; и
(b) гидовой РНК или ДНК, кодирующей гидовую РНК.
22. Способ по п. 21, причем способ предусматривает введение в клетку нуклеиновой кислоты, кодирующей белок Cas.
23. Способ по п. 22, предусматривающий, что нуклеиновая кислота, кодирующая белок Cas, представляет собой ДНК.
24. Способ по п. 22, предусматривающий, что нуклеиновая кислота, кодирующая белок Cas, представляет собой РНК.
25. Способ по любому из пп. 21-24, причем способ предусматривает введение в клетку гидовой РНК в форме РНК.
26. Способ по любому из пп. 21-24, причем способ предусматривает введение в клетку ДНК, кодирующей гидовую РНК.
27. Способ по любому из пп. 21-26, предусматривающий, что белок Cas или нуклеиновую кислоту, кодирующую белок Cas, и/или гидовую РНК, или ДНК, кодирующую гидовую РНК, вводят в клетку посредством доставки, опосредованной липидными наночастицами.
28. Способ по любому из пп. 21-26, предусматривающий, что белок Cas или нуклеиновую кислоту, кодирующую белок Cas, и/или гидовую РНК, или ДНК, кодирующую гидовую РНК, вводят в клетку посредством аденоассоциированного вируса.
29. Способ по любому из предыдущих пунктов, предусматривающий, что гидовая РНК представляет собой одномолекулярную гидовую РНК, в которой часть crRNA связана с частью tracrRNA.
30. Способ по п. 29, предусматривающий, что гидовая РНК содержит последовательность, представленную под SEQ ID NO: 1420, 256, 257 или 258.
31. Способ по любому из пп. 1-28, предусматривающий, что часть crRNA и часть tracrRNA являются отдельными молекулами РНК.
32. Способ по п. 31, предусматривающий, что часть crRNA содержит последовательность, представленную под SEQ ID NO: 1421, и/или часть tracrRNA содержит последовательность, представленную под SEQ ID NO: 1422.
33. Способ по любому из предыдущих пунктов, предусматривающий, что гидовая РНК содержит модификацию, обеспечивающую измененную или регулируемую стабильность.
34. Способ по любому из предыдущих пунктов, предусматривающий, что клетка находится в условиях ex vivo или in vivo.
35. Способ по любому из предыдущих пунктов, предусматривающий, что клетка представляет собой клетку мыши, клетку крысы или клетку человека.
36. Способ по любому из предыдущих пунктов, предусматривающий, что клетка представляет собой клетку печени человека, клетку печени мыши, плюрипотентную клетку мыши или плюрипотентную клетку крысы.
37. Способ по п. 36, предусматривающий, что клетка представляет собой клетку печени человека.
38. Способ по п. 37, предусматривающий, что клетка находится в условиях in vivo.
39. Способ по п. 38, предусматривающий, что белок Cas или нуклеиновую кислоту, кодирующую белок Cas, и гидовую РНК, или ДНК, кодирующую гидовую РНК, вводят в печень in vivo.
40. Способ по любому из предыдущих пунктов, предусматривающий, что клетка представляет собой клетку человека, и причем:
(a) целевая для гидовой РНК последовательность содержит любую из SEQ ID NO: 226-239; и/или
(b) нацеливающий на ДНК сегмент содержит любую из SEQ ID NO: 1629-1642; и/или
(с) гидовая РНК содержит любую из SEQ ID NO: 706-719; 936-949; 1166-1179 и 1396-1409.
41. Способ по любому из пп. 1-36, предусматривающий, что клетка представляет собой клетку мыши, и причем:
(a) целевая для гидовой РНК последовательность содержит любую из SEQ ID NO: 264-268; и/или
(b) нацеливающий на ДНК сегмент содержит любую из SEQ ID NO: 1648-1652; и/или
(c) гидовая РНК содержит любую из SEQ ID NO: 725-729, 955-959, 1185-1189 и 1415-1419.
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