JP2020534872A5 - - Google Patents

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JP2020534872A5
JP2020534872A5 JP2020538759A JP2020538759A JP2020534872A5 JP 2020534872 A5 JP2020534872 A5 JP 2020534872A5 JP 2020538759 A JP2020538759 A JP 2020538759A JP 2020538759 A JP2020538759 A JP 2020538759A JP 2020534872 A5 JP2020534872 A5 JP 2020534872A5
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cell
perturbation
functionalized
beads
nucleotide
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JP2020538759A
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JP2020534872A (ja
JP7361700B2 (ja
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Priority claimed from PCT/US2018/052497 external-priority patent/WO2019060857A1/en
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Priority to JP2023171925A priority Critical patent/JP2024001119A/ja
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Publication of JP7361700B2 publication Critical patent/JP7361700B2/ja
Priority to JP2026000271A priority patent/JP2026062913A/ja
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JP2020538759A 2017-09-25 2018-09-24 オリゴヌクレオチドにコードされた化学ライブラリ Active JP7361700B2 (ja)

Priority Applications (2)

Application Number Priority Date Filing Date Title
JP2023171925A JP2024001119A (ja) 2017-09-25 2023-10-03 オリゴヌクレオチドにコードされた化学ライブラリ
JP2026000271A JP2026062913A (ja) 2017-09-25 2026-01-05 オリゴヌクレオチドにコードされた化学ライブラリ

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Application Number Priority Date Filing Date Title
US201762562905P 2017-09-25 2017-09-25
US201762562912P 2017-09-25 2017-09-25
US62/562,905 2017-09-25
US62/562,912 2017-09-25
PCT/US2018/052497 WO2019060857A1 (en) 2017-09-25 2018-09-24 CHEMICAL LIBRARIES CODED BY OLIGONUCLEOTIDES

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JP2023171925A Division JP2024001119A (ja) 2017-09-25 2023-10-03 オリゴヌクレオチドにコードされた化学ライブラリ

Publications (3)

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JP2020534872A JP2020534872A (ja) 2020-12-03
JP2020534872A5 true JP2020534872A5 (enExample) 2021-11-04
JP7361700B2 JP7361700B2 (ja) 2023-10-16

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JP2020538759A Active JP7361700B2 (ja) 2017-09-25 2018-09-24 オリゴヌクレオチドにコードされた化学ライブラリ
JP2023171925A Pending JP2024001119A (ja) 2017-09-25 2023-10-03 オリゴヌクレオチドにコードされた化学ライブラリ
JP2026000271A Pending JP2026062913A (ja) 2017-09-25 2026-01-05 オリゴヌクレオチドにコードされた化学ライブラリ

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JP2023171925A Pending JP2024001119A (ja) 2017-09-25 2023-10-03 オリゴヌクレオチドにコードされた化学ライブラリ
JP2026000271A Pending JP2026062913A (ja) 2017-09-25 2026-01-05 オリゴヌクレオチドにコードされた化学ライブラリ

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US (7) US11084037B2 (enExample)
EP (1) EP3687687A4 (enExample)
JP (3) JP7361700B2 (enExample)
KR (2) KR20240091184A (enExample)
CN (2) CN115506034B (enExample)
CA (1) CA3076747A1 (enExample)
IL (1) IL273511A (enExample)
WO (2) WO2019060857A1 (enExample)

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