JP2019526225A5 - - Google Patents
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- Publication number
- JP2019526225A5 JP2019526225A5 JP2018556287A JP2018556287A JP2019526225A5 JP 2019526225 A5 JP2019526225 A5 JP 2019526225A5 JP 2018556287 A JP2018556287 A JP 2018556287A JP 2018556287 A JP2018556287 A JP 2018556287A JP 2019526225 A5 JP2019526225 A5 JP 2019526225A5
- Authority
- JP
- Japan
- Prior art keywords
- dna polymerase
- seq
- primer
- nucleotide
- kit
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 claims 37
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 claims 37
- 239000002773 nucleotide Substances 0.000 claims 30
- 125000003729 nucleotide group Chemical group 0.000 claims 30
- 238000000034 method Methods 0.000 claims 18
- 108020004707 nucleic acids Proteins 0.000 claims 16
- 102000039446 nucleic acids Human genes 0.000 claims 16
- 150000007523 nucleic acids Chemical class 0.000 claims 16
- 230000002950 deficient Effects 0.000 claims 15
- 229920001184 polypeptide Polymers 0.000 claims 15
- 102000004196 processed proteins & peptides Human genes 0.000 claims 15
- 108090000765 processed proteins & peptides Proteins 0.000 claims 15
- WHUUTDBJXJRKMK-UHFFFAOYSA-N Glutamic acid Natural products OC(=O)C(N)CCC(O)=O WHUUTDBJXJRKMK-UHFFFAOYSA-N 0.000 claims 14
- 125000003275 alpha amino acid group Chemical group 0.000 claims 14
- 235000001014 amino acid Nutrition 0.000 claims 14
- 235000013922 glutamic acid Nutrition 0.000 claims 14
- 239000004220 glutamic acid Substances 0.000 claims 14
- 125000000291 glutamic acid group Chemical group N[C@@H](CCC(O)=O)C(=O)* 0.000 claims 14
- 230000002441 reversible effect Effects 0.000 claims 12
- 239000011541 reaction mixture Substances 0.000 claims 6
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical group C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims 4
- 239000005547 deoxyribonucleotide Substances 0.000 claims 4
- 239000011777 magnesium Substances 0.000 claims 4
- 229910001437 manganese ion Inorganic materials 0.000 claims 4
- 235000011178 triphosphate Nutrition 0.000 claims 4
- 239000001226 triphosphate Substances 0.000 claims 4
- FYYHWMGAXLPEAU-UHFFFAOYSA-N Magnesium Chemical compound [Mg] FYYHWMGAXLPEAU-UHFFFAOYSA-N 0.000 claims 3
- 125000002637 deoxyribonucleotide group Chemical group 0.000 claims 3
- 229910052749 magnesium Inorganic materials 0.000 claims 3
- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 claims 3
- AHCYMLUZIRLXAA-SHYZEUOFSA-N Deoxyuridine 5'-triphosphate Chemical compound O1[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)C[C@@H]1N1C(=O)NC(=O)C=C1 AHCYMLUZIRLXAA-SHYZEUOFSA-N 0.000 claims 2
- 230000015572 biosynthetic process Effects 0.000 claims 2
- 238000006664 bond formation reaction Methods 0.000 claims 2
- 239000003054 catalyst Substances 0.000 claims 2
- SUYVUBYJARFZHO-RRKCRQDMSA-N dATP Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1 SUYVUBYJARFZHO-RRKCRQDMSA-N 0.000 claims 2
- SUYVUBYJARFZHO-UHFFFAOYSA-N dATP Natural products C1=NC=2C(N)=NC=NC=2N1C1CC(O)C(COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1 SUYVUBYJARFZHO-UHFFFAOYSA-N 0.000 claims 2
- RGWHQCVHVJXOKC-SHYZEUOFSA-J dCTP(4-) Chemical compound O=C1N=C(N)C=CN1[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)C1 RGWHQCVHVJXOKC-SHYZEUOFSA-J 0.000 claims 2
- HAAZLUGHYHWQIW-KVQBGUIXSA-N dGTP Chemical compound C1=NC=2C(=O)NC(N)=NC=2N1[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1 HAAZLUGHYHWQIW-KVQBGUIXSA-N 0.000 claims 2
- NHVNXKFIZYSCEB-XLPZGREQSA-N dTTP Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)C1 NHVNXKFIZYSCEB-XLPZGREQSA-N 0.000 claims 2
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims 2
- 230000035772 mutation Effects 0.000 claims 2
- JLVVSXFLKOJNIY-UHFFFAOYSA-N Magnesium ion Chemical compound [Mg+2] JLVVSXFLKOJNIY-UHFFFAOYSA-N 0.000 claims 1
- 239000003153 chemical reaction reagent Substances 0.000 claims 1
- 230000000295 complement effect Effects 0.000 claims 1
- -1 deoxyribonucleotide triphosphates Chemical class 0.000 claims 1
- 230000001419 dependent effect Effects 0.000 claims 1
- 230000000694 effects Effects 0.000 claims 1
- 238000010348 incorporation Methods 0.000 claims 1
- 150000002500 ions Chemical class 0.000 claims 1
- OOYGSFOGFJDDHP-KMCOLRRFSA-N kanamycin A sulfate Chemical group OS(O)(=O)=O.O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CN)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O[C@@H]2[C@@H]([C@@H](N)[C@H](O)[C@@H](CO)O2)O)[C@H](N)C[C@@H]1N OOYGSFOGFJDDHP-KMCOLRRFSA-N 0.000 claims 1
- 229910001425 magnesium ion Inorganic materials 0.000 claims 1
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662329489P | 2016-04-29 | 2016-04-29 | |
| US62/329,489 | 2016-04-29 | ||
| US201762444733P | 2017-01-10 | 2017-01-10 | |
| US62/444,733 | 2017-01-10 | ||
| PCT/US2017/030135 WO2017190012A1 (en) | 2016-04-29 | 2017-04-28 | Method of nucleic acid sequence determination |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2019526225A JP2019526225A (ja) | 2019-09-19 |
| JP2019526225A5 true JP2019526225A5 (enExample) | 2019-12-26 |
| JP6915939B2 JP6915939B2 (ja) | 2021-08-11 |
Family
ID=58672825
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2018556287A Expired - Fee Related JP6915939B2 (ja) | 2016-04-29 | 2017-04-28 | 核酸配列決定方法 |
Country Status (9)
| Country | Link |
|---|---|
| US (2) | US10584379B2 (enExample) |
| EP (1) | EP3449011B1 (enExample) |
| JP (1) | JP6915939B2 (enExample) |
| KR (1) | KR102231977B1 (enExample) |
| CN (1) | CN109154024B (enExample) |
| AU (1) | AU2017258523B2 (enExample) |
| CA (1) | CA3022431C (enExample) |
| SG (1) | SG11201809522WA (enExample) |
| WO (1) | WO2017190012A1 (enExample) |
Families Citing this family (40)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN109154024B (zh) | 2016-04-29 | 2022-03-04 | 欧姆尼欧美公司 | 核酸序列测定方法 |
| US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
| EP4039824A1 (en) * | 2016-08-15 | 2022-08-10 | Pacific Biosciences of California, Inc. | Method and system for sequencing nucleic acids |
| CA3050695C (en) | 2017-01-20 | 2024-02-20 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
| US10161003B2 (en) | 2017-04-25 | 2018-12-25 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
| EP3697932A1 (en) | 2017-10-19 | 2020-08-26 | Omniome, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
| CN111164222A (zh) | 2018-02-16 | 2020-05-15 | 伊鲁米纳公司 | 带有电荷标签的核苷酸及其使用方法 |
| EP3784800B1 (en) | 2018-04-26 | 2023-05-03 | Pacific Biosciences of California, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
| CN112384296B (zh) | 2018-05-17 | 2023-06-27 | 识别分析股份有限公司 | 用于直接电测量酶活性的装置、系统和方法 |
| EP3802874A1 (en) | 2018-05-31 | 2021-04-14 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
| EP3827097A1 (en) | 2018-07-24 | 2021-06-02 | Omniome, Inc. | Serial formation of ternary complex species |
| EP3853358A1 (en) | 2018-09-17 | 2021-07-28 | Omniome, Inc. | Engineered polymerases for improved sequencing |
| US10876148B2 (en) | 2018-11-14 | 2020-12-29 | Element Biosciences, Inc. | De novo surface preparation and uses thereof |
| US10768173B1 (en) | 2019-09-06 | 2020-09-08 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| US10704094B1 (en) | 2018-11-14 | 2020-07-07 | Element Biosciences, Inc. | Multipart reagents having increased avidity for polymerase binding |
| WO2020101795A1 (en) | 2018-11-15 | 2020-05-22 | Omniome, Inc. | Electronic detection of nucleic acid structure |
| CN113166805B (zh) | 2018-12-04 | 2024-07-16 | 加利福尼亚太平洋生物科学股份有限公司 | 用于核酸测序和其他分析测定的混合相流体 |
| EP3899032A2 (en) | 2018-12-20 | 2021-10-27 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
| MX2021009150A (es) | 2019-01-30 | 2021-12-10 | Univ Arizona State | Circuitos bioelectronicos, sistemas y metodos para preparar y usar los mismos. |
| EP3924513B1 (en) | 2019-02-14 | 2023-04-12 | Pacific Biosciences of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
| US12313627B2 (en) | 2019-05-01 | 2025-05-27 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| WO2020242901A1 (en) * | 2019-05-24 | 2020-12-03 | Element Biosciences, Inc. | Polymerase-nucleotide conjugates for sequencing by trapping |
| US12391929B2 (en) | 2019-05-24 | 2025-08-19 | Element Biosciences, Inc. | Polymerase-nucleotide conjugates for sequencing by trapping |
| JP2022537381A (ja) * | 2019-06-20 | 2022-08-25 | アリゾナ・ボード・オブ・リージェンツ・オン・ビハーフ・オブ・アリゾナ・ステイト・ユニバーシティー | 核酸配列の直接電気的読み出し |
| JP2022537069A (ja) * | 2019-06-21 | 2022-08-23 | サーモ フィッシャー サイエンティフィック バルティックス ユーエービー | 次世代配列決定ライブラリを調製するための核酸の標識化に有用なオリゴヌクレオチドが連結された三リン酸ヌクレオチド |
| TW202124406A (zh) | 2019-09-10 | 2021-07-01 | 美商歐姆尼歐美公司 | 核苷酸之可逆修飾 |
| US11287422B2 (en) | 2019-09-23 | 2022-03-29 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
| EP4045683B1 (en) | 2019-10-18 | 2025-02-19 | Pacific Biosciences of California, Inc. | Methods for capping nucleic acids |
| WO2021092431A1 (en) | 2019-11-08 | 2021-05-14 | Omniome, Inc. | Engineered polymerases for improved sequencing by binding |
| DE202019106695U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
| DE202019106694U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
| CA3173798A1 (en) | 2020-03-03 | 2021-09-10 | Pacific Biosciences Of California, Inc. | Methods and compositions for sequencing double stranded nucleic acids |
| US20230183798A1 (en) | 2020-05-05 | 2023-06-15 | Pacific Biosciences Of California, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
| WO2022006081A1 (en) * | 2020-06-30 | 2022-01-06 | Illumina, Inc. | Catalytically controlled sequencing by synthesis to produce scarless dna |
| US20220356519A1 (en) | 2021-05-10 | 2022-11-10 | Pacific Biosciences Of California, Inc. | Single-molecule seeding and amplification on a surface |
| WO2022240766A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Dna amplification buffer replenishment during rolling circle amplification |
| WO2023035108A1 (zh) * | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | 一种用于分析靶多核苷酸的序列的方法 |
| WO2023081485A1 (en) | 2021-11-08 | 2023-05-11 | Pacific Biosciences Of California, Inc. | Stepwise sequencing of a polynucleotide with a homogenous reaction mixture |
| WO2025010160A1 (en) | 2023-07-06 | 2025-01-09 | Pacific Biosciences Of California, Inc. | Methods and compositions for stabilizing concatemers |
| WO2025244989A1 (en) | 2024-05-21 | 2025-11-27 | Pacific Biosciences Of California, Inc. | Selectively functionalized nanoscale wells |
Family Cites Families (29)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1991006678A1 (en) | 1989-10-26 | 1991-05-16 | Sri International | Dna sequencing |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| US7414116B2 (en) | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
| AU2003269991A1 (en) * | 2003-08-20 | 2005-03-10 | Applera Corporation | Polymerase compositions |
| US8071755B2 (en) | 2004-05-25 | 2011-12-06 | Helicos Biosciences Corporation | Nucleotide analogs |
| US7264934B2 (en) | 2004-06-10 | 2007-09-04 | Ge Healthcare Bio-Sciences Corp. | Rapid parallel nucleic acid analysis |
| DE602005020011D1 (de) * | 2004-06-10 | 2010-04-29 | Ge Healthcare Bio Sciences | Verfahren zur nukleinsäureanalyse |
| WO2006044078A2 (en) | 2004-09-17 | 2006-04-27 | Pacific Biosciences Of California, Inc. | Apparatus and method for analysis of molecules |
| US7482120B2 (en) | 2005-01-28 | 2009-01-27 | Helicos Biosciences Corporation | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
| US7544794B1 (en) | 2005-03-11 | 2009-06-09 | Steven Albert Benner | Method for sequencing DNA and RNA by synthesis |
| CA2641851A1 (en) * | 2006-02-08 | 2007-08-16 | Eric Hans Vermaas | Method for sequencing a polynucleotide template |
| SG170802A1 (en) | 2006-03-31 | 2011-05-30 | Solexa Inc | Systems and devices for sequence by synthesis analysis |
| US8962293B2 (en) * | 2006-10-18 | 2015-02-24 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
| US8026091B2 (en) * | 2007-07-13 | 2011-09-27 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
| US8652781B2 (en) | 2008-02-12 | 2014-02-18 | Pacific Biosciences Of California, Inc. | Cognate sampling kinetics |
| US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
| WO2009145828A2 (en) | 2008-03-31 | 2009-12-03 | Pacific Biosciences Of California, Inc. | Two slow-step polymerase enzyme systems and methods |
| AU2009251883B2 (en) | 2008-03-31 | 2014-09-11 | Pacific Biosciences Of California, Inc. | Generation of modified polymerases for improved accuracy in single molecule sequencing |
| EP2607496B1 (en) | 2008-12-23 | 2014-07-16 | Illumina, Inc. | Methods useful in nucleic acid sequencing protocols |
| US20100261185A1 (en) | 2009-03-27 | 2010-10-14 | Life Technologies Corporation | Labeled enzyme compositions, methods and systems |
| US8632975B2 (en) | 2009-06-05 | 2014-01-21 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
| LT2742151T (lt) | 2011-08-10 | 2018-02-12 | Life Technologies Corporation | Polimerazės kompozicija |
| US9279154B2 (en) | 2011-12-21 | 2016-03-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
| US9309501B2 (en) | 2012-12-24 | 2016-04-12 | Industrial Technology Research Institute | Isolated DNA polymerases, kits and applications thereof |
| GB201301178D0 (en) | 2013-01-23 | 2013-03-06 | Dynamic Biosensors Gmbh | Method for sequencing a template nucleic acid immobilized on a substrate |
| EP4219739A3 (en) | 2013-09-30 | 2023-08-23 | Life Technologies Corporation | Polymerase compositions, methods of making and using same |
| US10077470B2 (en) | 2015-07-21 | 2018-09-18 | Omniome, Inc. | Nucleic acid sequencing methods and systems |
| US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
| CN109154024B (zh) | 2016-04-29 | 2022-03-04 | 欧姆尼欧美公司 | 核酸序列测定方法 |
-
2017
- 2017-04-28 CN CN201780026228.XA patent/CN109154024B/zh active Active
- 2017-04-28 AU AU2017258523A patent/AU2017258523B2/en not_active Ceased
- 2017-04-28 SG SG11201809522WA patent/SG11201809522WA/en unknown
- 2017-04-28 EP EP17722356.7A patent/EP3449011B1/en not_active Not-in-force
- 2017-04-28 KR KR1020187034503A patent/KR102231977B1/ko active Active
- 2017-04-28 CA CA3022431A patent/CA3022431C/en active Active
- 2017-04-28 JP JP2018556287A patent/JP6915939B2/ja not_active Expired - Fee Related
- 2017-04-28 US US15/581,822 patent/US10584379B2/en active Active
- 2017-04-28 WO PCT/US2017/030135 patent/WO2017190012A1/en not_active Ceased
-
2020
- 2020-01-07 US US16/736,071 patent/US11976323B2/en active Active
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