JP2015521030A5 - - Google Patents

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JP2015521030A5
JP2015521030A5 JP2015505831A JP2015505831A JP2015521030A5 JP 2015521030 A5 JP2015521030 A5 JP 2015521030A5 JP 2015505831 A JP2015505831 A JP 2015505831A JP 2015505831 A JP2015505831 A JP 2015505831A JP 2015521030 A5 JP2015521030 A5 JP 2015521030A5
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JP2015505831A 2012-04-09 2013-04-08 ナノ細孔の調製方法およびその使用 Expired - Fee Related JP6456816B2 (ja)

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US201261621981P 2012-04-09 2012-04-09
US61/621,981 2012-04-09
US201261662334P 2012-06-20 2012-06-20
US201261662330P 2012-06-20 2012-06-20
US201261662329P 2012-06-20 2012-06-20
US61/662,329 2012-06-20
US61/662,334 2012-06-20
US61/662,330 2012-06-20
US201361781353P 2013-03-14 2013-03-14
US61/781,353 2013-03-14
PCT/US2013/035635 WO2013154999A2 (en) 2012-04-09 2013-04-08 Method of preparation of nanopore and uses thereof

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JP2015521030A JP2015521030A (ja) 2015-07-27
JP2015521030A5 true JP2015521030A5 (enExample) 2016-06-09
JP6456816B2 JP6456816B2 (ja) 2019-01-23

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US (2) US10246479B2 (enExample)
EP (1) EP2836604B1 (enExample)
JP (1) JP6456816B2 (enExample)
CN (2) CN104379761B (enExample)
CA (1) CA2869753A1 (enExample)
ES (1) ES2906186T3 (enExample)
WO (1) WO2013154999A2 (enExample)

Families Citing this family (115)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9708358B2 (en) 2000-10-06 2017-07-18 The Trustees Of Columbia University In The City Of New York Massive parallel method for decoding DNA and RNA
EP3034627B1 (en) 2000-10-06 2019-01-30 The Trustees of Columbia University in the City of New York Massive parallel method for decoding dna and rna
WO2007002204A2 (en) 2005-06-21 2007-01-04 The Trustees Of Columbia University In The City Of New York Pyrosequencing methods and related compostions
WO2007053702A2 (en) 2005-10-31 2007-05-10 The Trustees Of Columbia University In The City Of New York Synthesis of four color 3'-o-allyl modified photocleavable fluorescent nucleotides and related methods
US8796432B2 (en) 2005-10-31 2014-08-05 The Trustees Of Columbia University In The City Of New York Chemically cleavable 3'-o-allyl-DNTP-allyl-fluorophore fluorescent nucleotide analogues and related methods
CN101495656B (zh) 2006-06-07 2017-02-08 纽约哥伦比亚大学理事会 采用带修饰的核苷酸通过纳米通道进行dna序列测定
GB2457402B (en) 2006-12-01 2011-10-19 Univ Columbia Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators
EP2209911B1 (en) 2007-10-19 2013-10-16 The Trustees of Columbia University in the City of New York Dna sequencing with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators and a deoxyinosine analogue with a reversible terminator group
EP2207900B1 (en) 2007-10-19 2015-04-29 The Trustees of Columbia University in the City of New York Design and synthesis of cleavable fluorescent nucleotides as reversible terminators for dna sequencing by synthesis
US9194838B2 (en) 2010-03-03 2015-11-24 Osaka University Method and device for identifying nucleotide, and method and device for determining nucleotide sequence of polynucleotide
CN103282518B (zh) 2010-12-17 2016-11-16 纽约哥伦比亚大学理事会 使用经修饰的核苷酸和纳米孔检测的dna边合成边测序
US9121059B2 (en) 2010-12-22 2015-09-01 Genia Technologies, Inc. Nanopore-based single molecule characterization
WO2012162429A2 (en) 2011-05-23 2012-11-29 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using raman and infrared spectroscopy detection
WO2013154999A2 (en) 2012-04-09 2013-10-17 The Trustees Of Columbia University In The City Of New York Method of preparation of nanopore and uses thereof
JP2015525077A (ja) 2012-06-15 2015-09-03 ジェニア・テクノロジーズ・インコーポレイテッド チップの構成および高精度な核酸配列決定
ES2779699T3 (es) * 2012-06-20 2020-08-18 Univ Columbia Secuenciación de ácidos nucleicos mediante detección en nanoporos de moléculas de etiqueta
US9605309B2 (en) 2012-11-09 2017-03-28 Genia Technologies, Inc. Nucleic acid sequencing using tags
WO2014144883A1 (en) 2013-03-15 2014-09-18 The Trustees Of Columbia University In The City Of New York Raman cluster tagged molecules for biological imaging
US10732183B2 (en) 2013-03-15 2020-08-04 The Trustees Of Columbia University In The City Of New York Method for detecting multiple predetermined compounds in a sample
EP3047282B1 (en) 2013-09-18 2019-05-15 Quantum Biosystems Inc. Biomolecule sequencing devices, systems and methods
JP2015077652A (ja) 2013-10-16 2015-04-23 クオンタムバイオシステムズ株式会社 ナノギャップ電極およびその製造方法
US9567630B2 (en) 2013-10-23 2017-02-14 Genia Technologies, Inc. Methods for forming lipid bilayers on biochips
EP3060918B1 (en) 2013-10-23 2019-09-18 Genia Technologies, Inc. High speed molecular sensing with nanopores
US10240195B2 (en) 2014-03-24 2019-03-26 The Trustees Of Columbia University In The City Of New York Chemical methods for producing tagged nucleotides
US10438811B1 (en) 2014-04-15 2019-10-08 Quantum Biosystems Inc. Methods for forming nano-gap electrodes for use in nanosensors
WO2015170782A1 (en) 2014-05-08 2015-11-12 Osaka University Devices, systems and methods for linearization of polymers
EP3158330B1 (en) * 2014-06-19 2019-03-06 The Board of Trustees of The Leland Stanford Junior University Apparatuses and methods for determining analyte charge
US10605766B2 (en) * 2014-07-15 2020-03-31 Illumina, Inc. Biochemically activated electronic device
US10190162B2 (en) 2014-10-23 2019-01-29 Complete Genomics, Inc. Signal confinement sequencing (SCS) and nucleotide analogues for signal confinement sequencing
US10060903B2 (en) * 2014-11-05 2018-08-28 Genia Technologies, Inc. Exporting measurements of nanopore arrays
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
US10429342B2 (en) 2014-12-18 2019-10-01 Edico Genome Corporation Chemically-sensitive field effect transistor
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
EP3256566A4 (en) 2015-02-10 2018-10-17 Multerra Bio, Inc. Apparatuses and methods for detecting molecules and binding energy
WO2016144973A1 (en) 2015-03-09 2016-09-15 The Trustees Of Columbia University In The City Of New York Pore-forming protein conjugate compositions and methods
EP3274471B1 (en) * 2015-03-23 2020-05-06 The Trustees of Columbia University in the City of New York Polymer tagged nucleotides for single molecule electronic snp assay
GB201508669D0 (en) * 2015-05-20 2015-07-01 Oxford Nanopore Tech Ltd Methods and apparatus for forming apertures in a solid state membrane using dielectric breakdown
EP4495255A3 (en) * 2015-06-03 2025-04-09 Illumina Inc. Systems and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores
JP6818995B2 (ja) * 2015-06-23 2021-01-27 ビージーアイ シェンチェン 電極及び化学物質の分析のための方法
WO2017042038A1 (en) 2015-09-10 2017-03-16 F. Hoffmann-La Roche Ag Polypeptide tagged nucleotides and use thereof in nucleic acid sequencing by nanopore detection
CN108779138B (zh) 2015-09-28 2022-06-17 哥伦比亚大学董事会 用作dna合成测序的可逆终止物的基于新的二硫键接头的核苷酸的设计与合成
CA3002886A1 (en) * 2015-10-21 2017-04-27 F. Hoffmann-La Roche Ag Use of fluoropolymers as a hydrophobic layer to support lipid bilayer formation for nanopore based dna sequencing
CN105368938B (zh) * 2015-11-06 2018-09-21 中国科学院重庆绿色智能技术研究院 一种基于电击穿在氮化硅薄膜上精确制备纳米孔的方法
CN108699599B (zh) 2015-11-19 2026-01-06 赛纳生物科技(北京)有限公司 获得和校正生物序列信息的方法
WO2017100027A1 (en) * 2015-12-08 2017-06-15 Quantapore, Inc. Method of translocating nucleic acids through nanopores
EP3408220A4 (en) * 2016-01-28 2019-09-04 Roswell Biotechnologies, Inc METHOD AND DEVICE FOR MEASURING ANALYTES USING LARGE CALCULAR MOLECULAR ELECTRONIC SENSOR ARRAYS
CN106191230A (zh) * 2016-02-02 2016-12-07 杭州格磊思沃科技有限公司 用氨基酸结合脱氧核苷酸进行dna测序的方法
CN115595360A (zh) 2016-04-27 2023-01-13 因美纳剑桥有限公司(Gb) 用于生物分子的测量和测序的系统和方法
WO2017201081A1 (en) 2016-05-16 2017-11-23 Agilome, Inc. Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids
CN116656795A (zh) 2016-05-23 2023-08-29 纽约哥伦比亚大学董事会 核苷酸衍生物及其使用方法
US10655174B2 (en) 2016-05-27 2020-05-19 Roche Sequencing Solutions, Inc. Tagged multi-nucleotides useful for nucleic acid sequencing
US10317392B2 (en) 2016-06-23 2019-06-11 Roche Sequencing Solutions, Inc. Formation and calibration of nanopore sequencing cells
US11124827B2 (en) 2016-06-23 2021-09-21 Roche Sequencing Solutions, Inc. Period-to-period analysis of AC signals from nanopore sequencing
US10648027B2 (en) 2016-08-08 2020-05-12 Roche Sequencing Solutions, Inc. Basecalling for stochastic sequencing processes
US10444179B2 (en) 2016-08-10 2019-10-15 Multerra Bio, Inc. Apparatuses and methods for detecting molecules and binding energy
US10669580B2 (en) 2016-08-26 2020-06-02 Roche Sequencing Solutions, Inc. Tagged nucleotides useful for nanopore detection
US11345961B2 (en) * 2016-10-05 2022-05-31 Roche Sequencing Solutions, Inc. Nucleic acid sequencing using nanotransistors
WO2018069302A1 (en) * 2016-10-12 2018-04-19 F. Hoffmann-La Roche Ag Nanopore voltage methods
CN109890497B (zh) * 2016-12-09 2021-03-02 株式会社日立高新技术 纳米孔隙形成方法、纳米孔隙形成装置以及生物分子测量装置
US10793901B2 (en) * 2016-12-28 2020-10-06 Roche Molecular Systems, Inc. Reversibly protected nucleotide reagents with high thermal stability
WO2018165207A1 (en) 2017-03-06 2018-09-13 Singular Genomic Systems, Inc. Nucleic acid sequencing-by-synthesis (sbs) methods that combine sbs cycle steps
CN119639879A (zh) 2017-03-28 2025-03-18 哥伦比亚大学董事会 用于连接荧光标记与用于dna合成测序的碱基的具有不同可裂解连接子的3'-o-改性的核苷酸类似物
EP3642619B1 (en) * 2017-06-20 2024-07-31 Illumina, Inc. Nanopore sequencing method
JP7084470B2 (ja) * 2017-08-23 2022-06-14 エフ.ホフマン-ラ ロシュ アーゲー 酵素のスクリーニング法
EP3688449A4 (en) * 2017-09-27 2021-11-24 Quantum Biosystems Inc. NANOELECTRODES DEVICES AND ASSOCIATED MANUFACTURING PROCESSES
US11493472B2 (en) * 2017-10-11 2022-11-08 Sony Semiconductor Solutions Corporation Sensor device and measurement apparatus
EP3717906A1 (en) * 2017-11-27 2020-10-07 Yissum Research Development Company of the Hebrew University of Jerusalem Ltd Amino acid-modified nanopores and uses thereof
EP3732484B1 (en) 2017-12-28 2023-06-07 F. Hoffmann-La Roche AG Measuring and removing noise in stochastic signals from a nanopore dna sequencing system driven by an alternating signal
EP3527673A1 (en) * 2018-02-15 2019-08-21 QIAGEN GmbH Sequencing method
WO2019164977A1 (en) 2018-02-21 2019-08-29 Singular Genomics Systems, Inc. Fluorinated nucleotides and uses thereof
WO2019166457A1 (en) 2018-02-28 2019-09-06 F. Hoffmann-La Roche Ag Tagged nucleoside compounds useful for nanopore detection
US12188086B2 (en) 2018-03-15 2025-01-07 The Trustees Of Columbia University In The City Of New York Nucleotide analogues and use thereof for nucleic acid sequencing and analysis preliminary class
CA3135743A1 (en) 2018-05-09 2019-11-14 Arizona Board Of Regents On Behalf Of Arizona State University Method for electronic detection and quantification of antibodies
KR20210045361A (ko) * 2018-05-17 2021-04-26 레커그니션 어낼러틱스 엘엘씨 효소 활성의 직접 전기적 측정을 위한 장치, 시스템 및 방법
CN121472373A (zh) 2018-05-22 2026-02-06 安序源有限公司 用于核酸测序的方法、系统和组合物
CN108645905B (zh) * 2018-05-24 2019-12-03 南通大学 一种基于固态纳米孔检测过氧化氢的方法
CN113227772B (zh) * 2018-07-23 2024-11-01 纽约市哥伦比亚大学信托人 用于生物标志物检测的单分子电子多重纳米孔免疫测定
TWI676193B (zh) 2018-07-31 2019-11-01 國家中山科學研究院 一種氮磷共摻雜的多孔石墨烯結合離子液體電解質的超高電容器及其製作方法
JP7232433B2 (ja) 2018-10-19 2023-03-03 エフ. ホフマン-ラ ロシュ アーゲー 配列決定のための電場補助型接合部
US12145960B2 (en) 2018-10-25 2024-11-19 Singular Genomics Systems, Inc. Nucleotide analogues
WO2020113138A1 (en) * 2018-11-29 2020-06-04 Universal Sequencing Technology A system for sequencing biopolymers
WO2020120542A2 (en) * 2018-12-11 2020-06-18 F. Hoffmann-La Roche Ag Systems and methods for self-limiting protein pore insertion in a membrane
JP7153140B2 (ja) * 2018-12-19 2022-10-13 エフ.ホフマン-ラ ロシュ アーゲー 3’保護ヌクレオチド
US11970735B2 (en) 2019-01-08 2024-04-30 Singular Genomics Systems, Inc. Nucleotide cleavable linkers and uses thereof
US12351855B2 (en) 2019-01-30 2025-07-08 Arizona Board Of Regents On Behalf Of Arizona State University Bioelectronic circuits, systems and methods for preparing and using them
US12050194B2 (en) 2019-02-15 2024-07-30 Illumina, Inc. Sensing systems
CN119662792A (zh) 2019-02-19 2025-03-21 阿尔缇玛基因组学公司 用于光学检测和测序的接头和方法
JP7730005B2 (ja) * 2019-05-29 2025-08-27 ナンジン、ユニバーシティ 電極を使用しないナノポアによる分析物の検出
CA3140279A1 (en) 2019-06-20 2020-12-24 Arizona Board Of Regents On Behalf Of Arizona State University Direct electrical readout of nucleic acid sequences
EP4100415A1 (en) 2020-02-06 2022-12-14 F. Hoffmann-La Roche AG Compositions that reduce template threading into a nanopore
US11807851B1 (en) 2020-02-18 2023-11-07 Ultima Genomics, Inc. Modified polynucleotides and uses thereof
IL295828A (en) 2020-02-28 2022-10-01 Univ Arizona State Methods for biopolymer flooring
CN115398008B (zh) * 2020-04-14 2025-05-09 成都今是科技有限公司 纳米孔制备和检测方法及其检测装置
EP4136256A4 (en) 2020-04-17 2024-05-22 Arizona Board of Regents on behalf of Arizona State University ELECTRONIC SINGLE MOLECULE SEQUENCE DETECTOR AND METHOD OF USE
JP2023524079A (ja) * 2020-04-30 2023-06-08 アリゾナ・ボード・オブ・リージェンツ・オン・ビハーフ・オブ・アリゾナ・ステイト・ユニバーシティー 生体高分子の配列決定のための方法
CN116018413A (zh) 2020-05-29 2023-04-25 代表亚利桑那大学的亚利桑那校董事会 具有可编程适配子的生物电子装置
ES2999861T3 (en) 2020-08-11 2025-02-27 Hoffmann La Roche Nucleoside-5'-oligophosphates tagged with positively-charged polymers, nanopores incorporating negative charges, and methods and systems using the same
WO2022140655A1 (en) * 2020-12-23 2022-06-30 The Trustees Of Columbia University In The City Of New York Single-molecule electronic multiplex nanopore immunoassays for biomarker detection
CN117255945A (zh) 2021-03-31 2023-12-19 伊鲁米纳公司 纳米孔传感器装置
EP4352244A4 (en) * 2021-06-07 2025-04-16 Arizona Board of Regents on behalf of Arizona State University Methods for sequencing biopolymers
US20250283162A1 (en) 2021-06-17 2025-09-11 Roche Sequencing Solutions, Inc. Engineered nanopore with a negatively charged polymer threaded through the channel
WO2022263489A1 (en) 2021-06-17 2022-12-22 F. Hoffmann-La Roche Ag Nucleoside-5 -oligophosphates having a cationically-modified nucleobase
WO2023055752A2 (en) 2021-09-28 2023-04-06 Axbio Inc. Methods for processing a nucleic acid sample and compositions thereof
US11946894B2 (en) * 2022-02-16 2024-04-02 Western Digital Technologies, Inc. Low noise amplifiers with feedback for nanopore applications
US11940404B2 (en) 2022-02-16 2024-03-26 Western Digital Technologies, Inc. Low noise amplifiers with shields for nanopore Applications
US20250109433A1 (en) * 2023-09-22 2025-04-03 Illumina, Inc. Macromolecule blocks for nanopore sequencing
US20250137990A1 (en) * 2023-10-31 2025-05-01 Western Digital Technologies, Inc. Nucleic acid sequencing using nanopores
US12523644B2 (en) * 2023-10-31 2026-01-13 Western Digital Technologies, Inc. Methods and systems for nucleic acid sequencing using nanopores
WO2025128542A1 (en) * 2023-12-11 2025-06-19 University Of Washington Nanopore sequencing dna by replacement of nucleotides with analogs
CN117947165B (zh) * 2024-01-19 2024-10-08 西安交通大学医学院第二附属医院 PCR检测肺腺癌癌前病变人群血浆lncRNA的检测方法
WO2026017094A1 (zh) * 2024-07-16 2026-01-22 成都今是科技有限公司 核酸测序系统
CN119673285B (zh) * 2024-11-14 2026-01-27 河南华之源智造科技有限公司 一种生物纳米孔对dna核酸生物体进行确定的数据处理方法

Family Cites Families (127)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5547839A (en) * 1989-06-07 1996-08-20 Affymax Technologies N.V. Sequencing of surface immobilized polymers utilizing microflourescence detection
AU3729393A (en) 1992-02-20 1993-09-13 State Of Oregon Acting By And Through The Oregon State Board Of Higher Education On Behalf Of Oregon State University, The Boomerand DNA amplification
ATE143730T1 (de) 1992-04-22 1996-10-15 Ecole Polytech Lipidmembranen fur biosensoranwendungen
GB9315847D0 (en) 1993-07-30 1993-09-15 Isis Innovation Tag reagent and assay method
US5795782A (en) 1995-03-17 1998-08-18 President & Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US20120160687A1 (en) 1995-03-17 2012-06-28 President And Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US6362002B1 (en) 1995-03-17 2002-03-26 President And Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US6046005A (en) 1997-01-15 2000-04-04 Incyte Pharmaceuticals, Inc. Nucleic acid sequencing with solid phase capturable terminators comprising a cleavable linking group
US5876936A (en) 1997-01-15 1999-03-02 Incyte Pharmaceuticals, Inc. Nucleic acid sequencing with solid phase capturable terminators
US5804386A (en) 1997-01-15 1998-09-08 Incyte Pharmaceuticals, Inc. Sets of labeled energy transfer fluorescent primers and their use in multi component analysis
US6485703B1 (en) 1998-07-31 2002-11-26 The Texas A&M University System Compositions and methods for analyte detection
US6267872B1 (en) 1998-11-06 2001-07-31 The Regents Of The University Of California Miniature support for thin films containing single channels or nanopores and methods for using same
US20030054360A1 (en) 1999-01-19 2003-03-20 Larry Gold Method and apparatus for the automated generation of nucleic acid ligands
EP1192103A1 (en) 1999-06-22 2002-04-03 President And Fellows of Harvard College Control of solid state dimensional features
US6464842B1 (en) 1999-06-22 2002-10-15 President And Fellows Of Harvard College Control of solid state dimensional features
EP1212462B1 (en) 1999-09-07 2006-01-25 The Regents of the University of California Methods of determining the presence of double stranded nucleic acids in a sample
US6399335B1 (en) 1999-11-16 2002-06-04 Advanced Research And Technology Institute, Inc. γ-phosphoester nucleoside triphosphates
DE19956753A1 (de) 1999-11-25 2001-06-28 Schott Glas Verfahren und Vorrichtung zum Tempern von flachen Körpern
US6383749B2 (en) 1999-12-02 2002-05-07 Clontech Laboratories, Inc. Methods of labeling nucleic acids for use in array based hybridization assays
US6916665B2 (en) 2000-02-11 2005-07-12 The Texas A&M University System Biosensor compositions and methods of use
US6616895B2 (en) 2000-03-23 2003-09-09 Advanced Research Corporation Solid state membrane channel device for the measurement and characterization of atomic and molecular sized samples
US6413792B1 (en) 2000-04-24 2002-07-02 Eagle Research Development, Llc Ultra-fast nucleic acid sequencing device and a method for making and using the same
EP1287154A4 (en) 2000-06-07 2010-12-15 Pacific Biosciences California NUCLEOTIDES WITH CHARGE SWITCHING
US6936702B2 (en) 2000-06-07 2005-08-30 Li-Cor, Inc. Charge-switch nucleotides
US7238795B2 (en) 2000-08-03 2007-07-03 Roche Molecular Systems, Inc. Nucleic acid binding compounds containing pyrazolo[3,4-d]pyrimidine analogues of purin-2,6-diamine and their uses
JP2004508838A (ja) 2000-09-11 2004-03-25 ザ・トラスティーズ・オブ・コランビア・ユニバーシティー・イン・ザ・シティー・オブ・ニューヨーク 組合せ蛍光エネルギー移動タグ及びそれらの使用
US20060057565A1 (en) 2000-09-11 2006-03-16 Jingyue Ju Combinatorial fluorescence energy transfer tags and uses thereof
US6627748B1 (en) 2000-09-11 2003-09-30 The Trustees Of Columbia University In The City Of New York Combinatorial fluorescence energy transfer tags and their applications for multiplex genetic analyses
US9708358B2 (en) 2000-10-06 2017-07-18 The Trustees Of Columbia University In The City Of New York Massive parallel method for decoding DNA and RNA
EP3034627B1 (en) 2000-10-06 2019-01-30 The Trustees of Columbia University in the City of New York Massive parallel method for decoding dna and rna
US20030027140A1 (en) 2001-03-30 2003-02-06 Jingyue Ju High-fidelity DNA sequencing using solid phase capturable dideoxynucleotides and mass spectrometry
US20030104428A1 (en) 2001-06-21 2003-06-05 President And Fellows Of Harvard College Method for characterization of nucleic acid molecules
WO2003020734A2 (en) 2001-08-29 2003-03-13 Amersham Biosciences Corp Labeled nucleoside polyphosphates
US20030166282A1 (en) 2002-02-01 2003-09-04 David Brown High potency siRNAS for reducing the expression of target genes
WO2003080861A1 (en) * 2002-03-22 2003-10-02 MAX-PLANCK-Gesellschaft zur Förderung der Wissenschaften e.V. Single molecule sequencing using phosphate labeled nucleotides
US7005264B2 (en) 2002-05-20 2006-02-28 Intel Corporation Method and apparatus for nucleic acid sequencing and identification
US7528116B2 (en) 2002-05-30 2009-05-05 Memorial Sloan Kettering Cancer Center Kinase suppressor of Ras inactivation for therapy of Ras mediated tumorigenesis
US7074597B2 (en) 2002-07-12 2006-07-11 The Trustees Of Columbia University In The City Of New York Multiplex genotyping using solid phase capturable dideoxynucleotides and mass spectrometry
US7355216B2 (en) 2002-12-09 2008-04-08 The Regents Of The University Of California Fluidic nanotubes and devices
WO2004055160A2 (en) 2002-12-13 2004-07-01 The Trustees Of Columbia University In The City Of New York Biomolecular coupling methods using 1,3-dipolar cycloaddition chemistry
US6870361B2 (en) 2002-12-21 2005-03-22 Agilent Technologies, Inc. System with nano-scale conductor and nano-opening
US20040152119A1 (en) * 2003-02-05 2004-08-05 Anup Sood Solid phase sequencing
WO2004072238A2 (en) 2003-02-05 2004-08-26 Amersham Biosciences Corp Terminal-phosphate-labeled nucleotides with new linkers
US7745116B2 (en) 2003-04-08 2010-06-29 Pacific Biosciences Of California, Inc. Composition and method for nucleic acid sequencing
WO2005017025A2 (en) 2003-08-15 2005-02-24 The President And Fellows Of Harvard College Study of polymer molecules and conformations with a nanopore
US7019346B2 (en) 2003-12-23 2006-03-28 Intel Corporation Capacitor having an anodic metal oxide substrate
US7622279B2 (en) 2004-03-03 2009-11-24 The Trustees Of Columbia University In The City Of New York Photocleavable fluorescent nucleotides for DNA sequencing on chip constructed by site-specific coupling chemistry
US7279337B2 (en) 2004-03-10 2007-10-09 Agilent Technologies, Inc. Method and apparatus for sequencing polymers through tunneling conductance variation detection
WO2006028508A2 (en) 2004-03-23 2006-03-16 President And Fellows Of Harvard College Methods and apparatus for characterizing polynucleotides
US20050239134A1 (en) 2004-04-21 2005-10-27 Board Of Regents, The University Of Texas System Combinatorial selection of phosphorothioate single-stranded DNA aptamers for TGF-beta-1 protein
GB2431013B (en) 2004-07-23 2008-05-21 Electronic Bio Sciences Llc Method and apparatus for sensing a time varying current passing through an ion channel
WO2006020775A2 (en) 2004-08-13 2006-02-23 Harvard University An ultra high-throughput opti-nanopore dna readout platform
US20060105461A1 (en) 2004-10-22 2006-05-18 May Tom-Moy Nanopore analysis system
US7867716B2 (en) 2004-12-21 2011-01-11 The Texas A&M University System High temperature ion channels and pores
GB0505971D0 (en) 2005-03-23 2005-04-27 Isis Innovation Delivery of molecules to a lipid bilayer
WO2007002204A2 (en) 2005-06-21 2007-01-04 The Trustees Of Columbia University In The City Of New York Pyrosequencing methods and related compostions
US20070190542A1 (en) 2005-10-03 2007-08-16 Ling Xinsheng S Hybridization assisted nanopore sequencing
US7397232B2 (en) 2005-10-21 2008-07-08 The University Of Akron Coulter counter having a plurality of channels
WO2007053702A2 (en) 2005-10-31 2007-05-10 The Trustees Of Columbia University In The City Of New York Synthesis of four color 3'-o-allyl modified photocleavable fluorescent nucleotides and related methods
US8796432B2 (en) 2005-10-31 2014-08-05 The Trustees Of Columbia University In The City Of New York Chemically cleavable 3'-o-allyl-DNTP-allyl-fluorophore fluorescent nucleotide analogues and related methods
CN101346472B (zh) * 2005-12-21 2013-04-24 霍夫曼—拉罗奇有限公司 用可逆2’-修饰的核苷酸进行的序列测定和基因分型
AU2006331512B2 (en) 2005-12-22 2012-02-23 Pacific Biosciences Of California, Inc. Active surface coupled polymerases
US20070298511A1 (en) 2006-04-27 2007-12-27 The Texas A&M University System Nanopore sensor system
US7777505B2 (en) 2006-05-05 2010-08-17 University Of Utah Research Foundation Nanopore platforms for ion channel recordings and single molecule detection and analysis
CN101495656B (zh) * 2006-06-07 2017-02-08 纽约哥伦比亚大学理事会 采用带修饰的核苷酸通过纳米通道进行dna序列测定
CN1932039B (zh) * 2006-09-21 2010-06-16 上海交通大学 外切酶-纳米孔的单分子核酸测序方法
GB2457402B (en) 2006-12-01 2011-10-19 Univ Columbia Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators
US7902345B2 (en) 2006-12-05 2011-03-08 Sequenom, Inc. Detection and quantification of biomolecules using mass spectrometry
US8003319B2 (en) 2007-02-02 2011-08-23 International Business Machines Corporation Systems and methods for controlling position of charged polymer inside nanopore
EP2122344B8 (en) 2007-02-20 2019-08-21 Oxford Nanopore Technologies Limited Lipid bilayer sensor system
WO2008124107A1 (en) 2007-04-04 2008-10-16 The Regents Of The University Of California Compositions, devices, systems, and methods for using a nanopore
WO2009020682A2 (en) * 2007-05-08 2009-02-12 The Trustees Of Boston University Chemical functionalization of solid-state nanopores and nanopore arrays and applications thereof
US20090073293A1 (en) 2007-06-27 2009-03-19 Yoel Yaffe CMOS image sensors with increased dynamic range and methods of operating the same
GB0713143D0 (en) 2007-07-06 2007-08-15 Ucl Business Plc Nucleic acid detection method
EP2201136B1 (en) 2007-10-01 2017-12-06 Nabsys 2.0 LLC Nanopore sequencing by hybridization of probes to form ternary complexes and variable range alignment
US8273532B2 (en) 2007-10-02 2012-09-25 President And Fellows Of Harvard College Capture, recapture, and trapping of molecules with a nanopore
EP2209911B1 (en) * 2007-10-19 2013-10-16 The Trustees of Columbia University in the City of New York Dna sequencing with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators and a deoxyinosine analogue with a reversible terminator group
EP2207900B1 (en) 2007-10-19 2015-04-29 The Trustees of Columbia University in the City of New York Design and synthesis of cleavable fluorescent nucleotides as reversible terminators for dna sequencing by synthesis
GB0724736D0 (en) 2007-12-19 2008-01-30 Oxford Nanolabs Ltd Formation of layers of amphiphilic molecules
US8133672B2 (en) 2008-03-31 2012-03-13 Pacific Biosciences Of California, Inc. Two slow-step polymerase enzyme systems and methods
EP2107040B1 (en) 2008-03-31 2011-10-26 Sony Deutschland Gmbh A method of fabricating a membrane having a tapered pore
CN102124018A (zh) 2008-04-29 2011-07-13 生命科技公司 可维持从核苷酸模板酶促合成双链核苷酸的非天然聚合酶底物及其使用的方法
US8940142B2 (en) 2008-05-05 2015-01-27 The Regents Of The University Of California Functionalized nanopipette biosensor
US20110229877A1 (en) * 2008-07-07 2011-09-22 Oxford Nanopore Technologies Limited Enzyme-pore constructs
US8921046B2 (en) 2008-09-19 2014-12-30 Pacific Biosciences Of California, Inc. Nucleic acid sequence analysis
WO2010062903A2 (en) 2008-11-26 2010-06-03 Board Of Regents, The University Of Texas System Genomic sequencing using modified protein pores and ionic liquids
US20100227414A1 (en) 2009-03-05 2010-09-09 Trex Enterprises Corp. Affinity capture mass spectroscopy with a porous silicon biosensor
GB0905140D0 (en) 2009-03-25 2009-05-06 Isis Innovation Method
WO2010117470A2 (en) 2009-04-10 2010-10-14 Pacific Biosciences Of California, Inc. Nanopore sequencing devices and methods
WO2011038241A1 (en) 2009-09-25 2011-03-31 President And Fellows Of Harvard College Nucleic acid amplification and sequencing by synthesis with fluorogenic nucleotides
WO2011040996A1 (en) 2009-09-30 2011-04-07 Quantapore, Inc. Ultrafast sequencing of biological polymers using a labeled nanopore
US20110287414A1 (en) 2010-02-08 2011-11-24 Genia Technologies, Inc. Systems and methods for identifying a portion of a molecule
CN105273991B (zh) 2010-02-08 2019-05-10 吉尼亚科技公司 用于在纳米孔中操作分子的系统和方法
US8324914B2 (en) 2010-02-08 2012-12-04 Genia Technologies, Inc. Systems and methods for characterizing a molecule
US20120052188A1 (en) 2010-02-08 2012-03-01 Genia Technologies, Inc. Systems and methods for assembling a lipid bilayer on a substantially planar solid surface
US20110192723A1 (en) 2010-02-08 2011-08-11 Genia Technologies, Inc. Systems and methods for manipulating a molecule in a nanopore
US9605307B2 (en) 2010-02-08 2017-03-28 Genia Technologies, Inc. Systems and methods for forming a nanopore in a lipid bilayer
ES2978883T3 (es) 2010-02-23 2024-09-23 Univ Washington Secuenciación de analitos con nanoporos
US8652779B2 (en) * 2010-04-09 2014-02-18 Pacific Biosciences Of California, Inc. Nanopore sequencing using charge blockade labels
EP2593568B1 (en) 2010-07-14 2017-04-19 The Curators Of The University Of Missouri Nanopore-facilitated single molecule detection of nucleic acids
CN103282518B (zh) * 2010-12-17 2016-11-16 纽约哥伦比亚大学理事会 使用经修饰的核苷酸和纳米孔检测的dna边合成边测序
US9121059B2 (en) 2010-12-22 2015-09-01 Genia Technologies, Inc. Nanopore-based single molecule characterization
US8962242B2 (en) 2011-01-24 2015-02-24 Genia Technologies, Inc. System for detecting electrical properties of a molecular complex
US9110478B2 (en) 2011-01-27 2015-08-18 Genia Technologies, Inc. Temperature regulation of measurement arrays
WO2012109574A2 (en) 2011-02-11 2012-08-16 Nabsys, Inc. Assay methods using dna binding proteins
WO2012162429A2 (en) 2011-05-23 2012-11-29 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using raman and infrared spectroscopy detection
WO2013016486A1 (en) 2011-07-27 2013-01-31 The Board Of Trustees Of The University Of Illinois Nanopore sensors for biomolecular characterization
CA2861457A1 (en) * 2012-01-20 2013-07-25 Genia Technologies, Inc. Nanopore based molecular detection and sequencing
US8541849B2 (en) 2012-02-14 2013-09-24 Genia Technologies, Inc. Noise shielding techniques for ultra low current measurements in biochemical applications
US9850534B2 (en) 2012-02-16 2017-12-26 Genia Technologies, Inc. Methods for creating bilayers for use with nanopore sensors
WO2013154999A2 (en) 2012-04-09 2013-10-17 The Trustees Of Columbia University In The City Of New York Method of preparation of nanopore and uses thereof
JP2015525077A (ja) 2012-06-15 2015-09-03 ジェニア・テクノロジーズ・インコーポレイテッド チップの構成および高精度な核酸配列決定
ES2779699T3 (es) 2012-06-20 2020-08-18 Univ Columbia Secuenciación de ácidos nucleicos mediante detección en nanoporos de moléculas de etiqueta
US9605309B2 (en) 2012-11-09 2017-03-28 Genia Technologies, Inc. Nucleic acid sequencing using tags
WO2014144883A1 (en) 2013-03-15 2014-09-18 The Trustees Of Columbia University In The City Of New York Raman cluster tagged molecules for biological imaging
US10732183B2 (en) 2013-03-15 2020-08-04 The Trustees Of Columbia University In The City Of New York Method for detecting multiple predetermined compounds in a sample
WO2015123430A2 (en) 2014-02-12 2015-08-20 The Trustees Of Columbia University In The City Of New York Single molecule electronic multiplex snp assay and pcr analysis
US10240195B2 (en) 2014-03-24 2019-03-26 The Trustees Of Columbia University In The City Of New York Chemical methods for producing tagged nucleotides
US20170101675A1 (en) 2014-05-19 2017-04-13 The Trustees Of Columbia University In The City Of New York Ion sensor dna and rna sequencing by synthesis using nucleotide reversible terminators
WO2016144973A1 (en) 2015-03-09 2016-09-15 The Trustees Of Columbia University In The City Of New York Pore-forming protein conjugate compositions and methods
EP3274471B1 (en) 2015-03-23 2020-05-06 The Trustees of Columbia University in the City of New York Polymer tagged nucleotides for single molecule electronic snp assay
CN108779138B (zh) 2015-09-28 2022-06-17 哥伦比亚大学董事会 用作dna合成测序的可逆终止物的基于新的二硫键接头的核苷酸的设计与合成
US20180327828A1 (en) 2015-11-18 2018-11-15 The Trustees Of Columbia University In The City Of New York Ion sensor dna and rna sequencing by synthesis using nucleotide reversible terminators
CN109562142B (zh) 2016-04-04 2022-09-13 纽约哥伦比亚大学董事会 使用核苷酸类似物和拉曼检测的dna合成测序
WO2017176677A1 (en) 2016-04-04 2017-10-12 The Trustees Of Columbia University In The City Of New York Flourescence energy transfer-based single molecule/ensemble dna sequencing by synthesis
CN116656795A (zh) 2016-05-23 2023-08-29 纽约哥伦比亚大学董事会 核苷酸衍生物及其使用方法
CN119639879A (zh) 2017-03-28 2025-03-18 哥伦比亚大学董事会 用于连接荧光标记与用于dna合成测序的碱基的具有不同可裂解连接子的3'-o-改性的核苷酸类似物

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