JP2014520525A5 - - Google Patents

Download PDF

Info

Publication number
JP2014520525A5
JP2014520525A5 JP2014518468A JP2014518468A JP2014520525A5 JP 2014520525 A5 JP2014520525 A5 JP 2014520525A5 JP 2014518468 A JP2014518468 A JP 2014518468A JP 2014518468 A JP2014518468 A JP 2014518468A JP 2014520525 A5 JP2014520525 A5 JP 2014520525A5
Authority
JP
Japan
Prior art keywords
probe
target
ligated
sequence
restricted
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2014518468A
Other languages
English (en)
Japanese (ja)
Other versions
JP6028025B2 (ja
JP2014520525A (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/NL2012/050493 external-priority patent/WO2013009175A1/en
Publication of JP2014520525A publication Critical patent/JP2014520525A/ja
Publication of JP2014520525A5 publication Critical patent/JP2014520525A5/ja
Application granted granted Critical
Publication of JP6028025B2 publication Critical patent/JP6028025B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2014518468A 2011-07-08 2012-07-09 オリゴヌクレオチド・ライゲーション・アッセイに基づく配列ベースの遺伝子型決定 Active JP6028025B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201161505787P 2011-07-08 2011-07-08
US61/505,787 2011-07-08
PCT/NL2012/050493 WO2013009175A1 (en) 2011-07-08 2012-07-09 Sequence based genotyping based on oligonucleotide ligation assays

Publications (3)

Publication Number Publication Date
JP2014520525A JP2014520525A (ja) 2014-08-25
JP2014520525A5 true JP2014520525A5 (enExample) 2015-08-27
JP6028025B2 JP6028025B2 (ja) 2016-11-16

Family

ID=46579302

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2014518468A Active JP6028025B2 (ja) 2011-07-08 2012-07-09 オリゴヌクレオチド・ライゲーション・アッセイに基づく配列ベースの遺伝子型決定

Country Status (8)

Country Link
US (4) US9777322B2 (enExample)
EP (2) EP2980226A1 (enExample)
JP (1) JP6028025B2 (enExample)
AU (1) AU2012281242B2 (enExample)
CA (1) CA2840929C (enExample)
DK (1) DK2729580T3 (enExample)
ES (1) ES2556580T3 (enExample)
WO (1) WO2013009175A1 (enExample)

Families Citing this family (36)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20130040375A1 (en) 2011-08-08 2013-02-14 Tandem Diagnotics, Inc. Assay systems for genetic analysis
US20120034603A1 (en) 2010-08-06 2012-02-09 Tandem Diagnostics, Inc. Ligation-based detection of genetic variants
US8700338B2 (en) 2011-01-25 2014-04-15 Ariosa Diagnosis, Inc. Risk calculation for evaluation of fetal aneuploidy
US11203786B2 (en) 2010-08-06 2021-12-21 Ariosa Diagnostics, Inc. Detection of target nucleic acids using hybridization
US10533223B2 (en) 2010-08-06 2020-01-14 Ariosa Diagnostics, Inc. Detection of target nucleic acids using hybridization
US20130261003A1 (en) 2010-08-06 2013-10-03 Ariosa Diagnostics, In. Ligation-based detection of genetic variants
WO2013009175A1 (en) * 2011-07-08 2013-01-17 Keygene N.V. Sequence based genotyping based on oligonucleotide ligation assays
PL2828218T3 (pl) 2012-03-20 2021-01-11 University Of Washington Through Its Center For Commercialization Sposoby obniżania współczynnika błędów masywnie równoległej sekwencji dna z wykorzystaniem duplex consensus sequencing
WO2013192292A1 (en) * 2012-06-21 2013-12-27 Justin Lamb Massively-parallel multiplex locus-specific nucleic acid sequence analysis
WO2014036743A1 (en) * 2012-09-10 2014-03-13 Genesky Diagnostics (Suzhou) Inc. Method for multiplex nucleic acid analysis
US9270344B2 (en) * 2013-02-01 2016-02-23 Creating Revolutions, LLC Combination process interaction
JP2016513461A (ja) * 2013-03-12 2016-05-16 カウンシル,インコーポレーテッド 出生前遺伝子分析システム及び方法
EP3968023B1 (en) 2013-08-19 2025-10-08 Invitae Corporation Assays for single molecule detection and use thereof
CN106460057A (zh) * 2014-06-02 2017-02-22 贝斯4创新公司 核苷酸多态性检测方法
ES2752237T3 (es) * 2014-08-01 2020-04-03 Ariosa Diagnostics Inc Detección de ácidos nucleicos diana usando hibridación
CN104372093B (zh) * 2014-11-10 2016-09-21 博奥生物集团有限公司 一种基于高通量测序的snp检测方法
AU2016219943A1 (en) * 2015-02-18 2017-10-12 Singular Bio, Inc. Assays for single molecule detection and use thereof
GB2536446B (en) * 2015-03-17 2020-06-03 Salisbury Nhs Found Trust PCR method
US10844428B2 (en) * 2015-04-28 2020-11-24 Illumina, Inc. Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS)
CN106435744B (zh) 2015-08-13 2022-02-01 生捷科技控股公司 使用y-接头和消失限制位点的文库构建
EP3387152B1 (en) 2015-12-08 2022-01-26 Twinstrand Biosciences, Inc. Improved adapters, methods, and compositions for duplex sequencing
US20190323074A1 (en) * 2017-01-05 2019-10-24 Tervisetehnoloogiate Arenduskeskus As Quantifying dna sequences
EP3571616B1 (en) 2017-01-18 2021-05-19 Illumina, Inc. Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths
US11447818B2 (en) 2017-09-15 2022-09-20 Illumina, Inc. Universal short adapters with variable length non-random unique molecular identifiers
US11739367B2 (en) 2017-11-08 2023-08-29 Twinstrand Biosciences, Inc. Reagents and adapters for nucleic acid sequencing and methods for making such reagents and adapters
US11639928B2 (en) 2018-02-22 2023-05-02 10X Genomics, Inc. Methods and systems for characterizing analytes from individual cells or cell populations
EP3768853A4 (en) * 2018-03-23 2021-04-28 Board Of Regents The University Of Texas System EFFICIENT SEQUENCING OF DSDNA WITH EXTREMELY LOW ERROR RATE
AU2019287163B2 (en) 2018-06-12 2025-08-21 Keygene N.V. Nucleic acid amplification method
CN112673099A (zh) 2018-07-12 2021-04-16 特温斯特兰德生物科学有限公司 用于表征基因组编辑、克隆扩增的方法和试剂及相关应用
KR20210112350A (ko) * 2019-01-04 2021-09-14 윌리엄 마쉬 라이스 유니버시티 다중 복제수 변이 검출 및 대립 유전자 비율 정량화를 위한 정량적 앰플리콘 서열분석
EP3927840A1 (en) 2019-02-21 2021-12-29 Keygene N.V. Genotyping of polyploids
CA3153533A1 (en) * 2019-09-09 2021-03-18 Sherlock Biosciences, Inc. System
EP4028585A1 (en) * 2019-09-12 2022-07-20 GlaxoSmithKline Intellectual Property Development Limited Method for screening libraries
CN117015617B (zh) 2021-02-23 2025-04-04 10X基因组学有限公司 基于探针的核酸和蛋白质分析
WO2023081373A1 (en) * 2021-11-04 2023-05-11 Florida State University Research Foundation, Inc. Using hairpin formation to identify dna and rna sequences having a target nucleic acid sequence
CN118006735B (zh) * 2023-05-30 2025-07-04 深圳赛陆医疗科技有限公司 一种snp芯片及其制备方法和应用

Family Cites Families (80)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4883750A (en) 1984-12-13 1989-11-28 Applied Biosystems, Inc. Detection of specific sequences in nucleic acids
US5242794A (en) 1984-12-13 1993-09-07 Applied Biosystems, Inc. Detection of specific sequences in nucleic acids
GB8612087D0 (en) 1986-05-19 1986-06-25 Ici Plc Hybridisation probes
CA1323293C (en) 1987-12-11 1993-10-19 Keith C. Backman Assay using template-dependent nucleic acid probe reorganization
US4988617A (en) 1988-03-25 1991-01-29 California Institute Of Technology Method of detecting a nucleotide change in nucleic acids
EP0425563B1 (en) 1988-07-20 1996-05-15 David Segev Process for amplifying and detecting nucleic acid sequences
US5185243A (en) 1988-08-25 1993-02-09 Syntex (U.S.A.) Inc. Method for detection of specific nucleic acid sequences
EP0439182B1 (en) 1990-01-26 1996-04-24 Abbott Laboratories Improved method of amplifying target nucleic acids applicable to both polymerase and ligase chain reactions
EP0534858B2 (en) 1991-09-24 2005-04-27 Keygene N.V. Selective restriction fragment amplification : a general method for DNA fingerprinting
US5470705A (en) 1992-04-03 1995-11-28 Applied Biosystems, Inc. Probe composition containing a binding domain and polymer chain and methods of use
ES2204913T3 (es) 1993-04-12 2004-05-01 Northwestern University Metodo para formacion de oligonucleotidos.
US5692223A (en) 1993-10-22 1997-11-25 Minolta Co., Ltd. Remotely-controlled flash photographing system
SE9400522D0 (sv) 1994-02-16 1994-02-16 Ulf Landegren Method and reagent for detecting specific nucleotide sequences
US5942391A (en) 1994-06-22 1999-08-24 Mount Sinai School Of Medicine Nucleic acid amplification method: ramification-extension amplification method (RAM)
US20070269799A9 (en) * 1994-06-22 2007-11-22 Zhang David Y Nucleic acid amplification methods
US5876924A (en) 1994-06-22 1999-03-02 Mount Sinai School Of Medicine Nucleic acid amplification method hybridization signal amplification method (HSAM)
WO1996015271A1 (en) 1994-11-16 1996-05-23 Abbott Laboratories Multiplex ligations-dependent amplification
SE506908C2 (sv) 1995-09-08 1998-03-02 Ulf Landegren Inst F Medicinsk Medicinsk användning av padlockprober
CA2255774C (en) * 1996-05-29 2008-03-18 Cornell Research Foundation, Inc. Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions
US6312892B1 (en) 1996-07-19 2001-11-06 Cornell Research Foundation, Inc. High fidelity detection of nucleic acid differences by ligase detection reaction
DE69813203T2 (de) 1998-07-21 2004-02-12 Keygene N.V. Verbesserte Primer zur AFLP Amplifizierung
ATE309390T1 (de) 1998-07-30 2005-11-15 Solexa Ltd Matrizen von biomolekülen und ihre verwendung in sequenzierung
GB0002310D0 (en) 2000-02-01 2000-03-22 Solexa Ltd Polynucleotide sequencing
WO2000027521A1 (en) 1998-11-06 2000-05-18 Solexa Ltd. A method for reproducing molecular arrays
AU3567900A (en) 1999-03-30 2000-10-16 Solexa Ltd. Polynucleotide sequencing
US20020086289A1 (en) 1999-06-15 2002-07-04 Don Straus Genomic profiling: a rapid method for testing a complex biological sample for the presence of many types of organisms
US6156178A (en) 1999-07-13 2000-12-05 Molecular Dynamics, Inc. Increased throughput analysis of small compounds using multiple temporally spaced injections
EP1218543A2 (en) 1999-09-29 2002-07-03 Solexa Ltd. Polynucleotide sequencing
GB0002389D0 (en) 2000-02-02 2000-03-22 Solexa Ltd Molecular arrays
US6221603B1 (en) 2000-02-04 2001-04-24 Molecular Dynamics, Inc. Rolling circle amplification assay for nucleic acid analysis
EP1130113A1 (en) 2000-02-15 2001-09-05 Johannes Petrus Schouten Multiplex ligation dependent amplification assay
WO2001092579A2 (en) 2000-05-30 2001-12-06 Pe Corporation (Ny) Methods for detecting target nucleic acids using coupled ligation and amplification
GB2389904A (en) 2001-01-30 2003-12-24 Solexa Ltd Arrayed polynucleotides and their use in genome analysis
CA2453207A1 (en) 2001-07-06 2003-01-16 454 Corporation Method for isolation of independent, parallel chemical micro-reactions using a porous filter
GB0119719D0 (en) 2001-08-13 2001-10-03 Solexa Ltd DNA sequence analysis
US6902921B2 (en) 2001-10-30 2005-06-07 454 Corporation Sulfurylase-luciferase fusion proteins and thermostable sulfurylase
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
US20030119004A1 (en) 2001-12-05 2003-06-26 Wenz H. Michael Methods for quantitating nucleic acids using coupled ligation and amplification
EP1319718A1 (en) 2001-12-14 2003-06-18 Keygene N.V. High throughput analysis and detection of multiple target sequences
DE10162904B4 (de) 2001-12-20 2006-05-11 Jeyes Deutschland Gmbh Vorrichtung zur Abgabe eines flüssigen Wirkstoffs in ein Spülwasser
AU2002358353A1 (en) * 2001-12-28 2003-07-30 Keygene N.V. Discrimination and detection of target nucleotide sequences using mass spectrometry
GB2395954A (en) 2002-08-23 2004-06-09 Solexa Ltd Modified nucleotides
ES2326077T3 (es) 2002-08-23 2009-09-30 Illumina Cambridge Limited Nucleotidos marcados.
EP1567669B1 (en) 2002-12-02 2010-03-24 Illumina Cambridge Limited Determination of methylation of nucleic acid sequences
ATE437945T1 (de) 2003-01-29 2009-08-15 454 Corp Verfahren zur amplifikation und sequenzierung von nukleinsäuren
GB0304371D0 (en) 2003-02-26 2003-04-02 Solexa Ltd DNA Sequence analysis
WO2005001129A2 (en) * 2003-06-06 2005-01-06 Applera Corporation Mobility cassettes
DE602004020220D1 (de) 2003-06-17 2009-05-07 Keygene Nv Mittel und verfahren zum nachweis von zielnukleotidsequenzen unter verwendung von ligationstests mit verbesserten oligonukleotidsondenpaaren
GB0320059D0 (en) 2003-08-27 2003-10-01 Solexa Ltd A method of sequencing
WO2005026389A2 (en) * 2003-08-29 2005-03-24 MAX-PLANCK-Gesellschaft zur Förderung der Wissenschaften e.V. Ligation-based method of analysis of single nucleotide polymorphisms on genomic dna
EP1664345B1 (en) 2003-09-02 2015-04-01 Keygene N.V. Ola-based methods for the detection of target nucleic acid sequences
EP1602733A1 (en) 2004-06-02 2005-12-07 Keygene N.V. Detection of target nucleotide sequences using an asymmetric oligonucleotide ligation assay
GB0326073D0 (en) 2003-11-07 2003-12-10 Solexa Ltd Improvements in or relating to polynucleotide arrays
EP1701785A1 (en) 2004-01-07 2006-09-20 Solexa Ltd. Modified molecular arrays
GB0400584D0 (en) 2004-01-12 2004-02-11 Solexa Ltd Nucleic acid chacterisation
GB0400974D0 (en) 2004-01-16 2004-02-18 Solexa Ltd Multiple inexact matching
GB0402895D0 (en) 2004-02-10 2004-03-17 Solexa Ltd Arrayed polynucleotides
US20060211000A1 (en) * 2005-03-21 2006-09-21 Sorge Joseph A Methods, compositions, and kits for detection of microRNA
WO2007145612A1 (en) 2005-06-06 2007-12-21 454 Life Sciences Corporation Paired end sequencing
EP3404114B1 (en) * 2005-12-22 2021-05-05 Keygene N.V. Method for high-throughput aflp-based polymorphism detection
US20070196849A1 (en) * 2006-02-22 2007-08-23 Applera Corporation Double-ligation Method for Haplotype and Large-scale Polymorphism Detection
EP1991698B1 (en) * 2006-03-01 2013-12-18 Keygene N.V. High throughput sequence-based detection of snps using ligation assays
CA2672315A1 (en) 2006-12-14 2008-06-26 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes using large scale fet arrays
US8349167B2 (en) 2006-12-14 2013-01-08 Life Technologies Corporation Methods and apparatus for detecting molecular interactions using FET arrays
US8852864B2 (en) 2008-01-17 2014-10-07 Sequenom Inc. Methods and compositions for the analysis of nucleic acids
EP2982437B1 (en) 2008-06-25 2017-12-06 Life Technologies Corporation Methods and apparatus for measuring analytes using large scale fet arrays
EP2304420A4 (en) 2008-06-26 2013-10-30 Life Technologies Corp METHODS AND APPARATUS FOR DETECTING MOLECULAR INTERACTIONS USING FET ARRAYS
US20100035252A1 (en) 2008-08-08 2010-02-11 Ion Torrent Systems Incorporated Methods for sequencing individual nucleic acids under tension
US20100301398A1 (en) 2009-05-29 2010-12-02 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes
US20100137143A1 (en) 2008-10-22 2010-06-03 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes
US8546128B2 (en) 2008-10-22 2013-10-01 Life Technologies Corporation Fluidics system for sequential delivery of reagents
CN103884760A (zh) 2008-10-22 2014-06-25 生命技术公司 单芯片化学测定装置和单芯片核酸测定装置
CA2760439A1 (en) 2009-04-30 2010-11-04 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers
US8673627B2 (en) 2009-05-29 2014-03-18 Life Technologies Corporation Apparatus and methods for performing electrochemical reactions
US8574835B2 (en) 2009-05-29 2013-11-05 Life Technologies Corporation Scaffolded nucleic acid polymer particles and methods of making and using
EP3663750B1 (en) 2009-05-29 2021-11-03 Life Technologies Corporation Scaffolded nucleic acid polymer particles and methods of making and using
US20120034603A1 (en) 2010-08-06 2012-02-09 Tandem Diagnostics, Inc. Ligation-based detection of genetic variants
WO2012021749A1 (en) 2010-08-11 2012-02-16 Celula, Inc. Genotyping dna
CN106434871B (zh) 2011-05-17 2020-08-18 德克斯特里蒂诊断公司 用于检测目标核酸的方法与组合物
WO2013009175A1 (en) * 2011-07-08 2013-01-17 Keygene N.V. Sequence based genotyping based on oligonucleotide ligation assays

Similar Documents

Publication Publication Date Title
JP2014520525A5 (enExample)
AU2019213047B2 (en) CRISPR effector system based diagnostics
JP2014502513A5 (enExample)
AU2018392709B2 (en) CRISPR effector system based multiplex diagnostics
Buermans et al. Next generation sequencing technology: advances and applications
US20230038055A1 (en) Nucleic acid reactions and related methods and compositions
Andersson et al. Properties of targeted preamplification in DNA and cDNA quantification
JP2015156872A5 (enExample)
CA3076518A1 (en) Crispr effector system based diagnostics
AU2017371324A1 (en) CRISPR effector system based diagnostics
JP2017108748A5 (enExample)
JP6381659B2 (ja) メチル化検出方法
Hang et al. Cas12a-assisted RTF-EXPAR for accurate, rapid and simple detection of SARS-CoV-2 RNA
RU2019138698A (ru) Способы и композиции для днк-профилирования
JP6596442B2 (ja) Dna増幅を増強および/または予測するための組成物および方法
JP2013509871A5 (enExample)
JP6714709B2 (ja) 核酸配列決定のための新規アダプターおよび使用法
RU2014115802A (ru) Зонд со специфичностью к нескольким целевым областям, состоящий из трех частей
US10982253B2 (en) Nucleic acid catenane with a linking duplex biosensor for detection of a microorganism target
RU2018113750A (ru) Улучшенное выявление коротких гомополимерных повторов
US9506113B2 (en) Nucleic acid ligation systems and methods
JP2014003946A5 (enExample)
JP2013534810A5 (enExample)
JP2007125011A (ja) ポリメラーゼ連鎖反応の助けによりdna又はrnaの特定のフラグメントを検出する方法
JP2004187545A5 (enExample)