AU2012281242B2 - Sequence based genotyping based on oligonucleotide ligation assays - Google Patents
Sequence based genotyping based on oligonucleotide ligation assays Download PDFInfo
- Publication number
- AU2012281242B2 AU2012281242B2 AU2012281242A AU2012281242A AU2012281242B2 AU 2012281242 B2 AU2012281242 B2 AU 2012281242B2 AU 2012281242 A AU2012281242 A AU 2012281242A AU 2012281242 A AU2012281242 A AU 2012281242A AU 2012281242 B2 AU2012281242 B2 AU 2012281242B2
- Authority
- AU
- Australia
- Prior art keywords
- probes
- sequence
- target
- probe
- ligated
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
Links
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
- C12Q1/683—Hybridisation assays for detection of mutation or polymorphism involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161505787P | 2011-07-08 | 2011-07-08 | |
| US61/505,787 | 2011-07-08 | ||
| PCT/NL2012/050493 WO2013009175A1 (en) | 2011-07-08 | 2012-07-09 | Sequence based genotyping based on oligonucleotide ligation assays |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2012281242A1 AU2012281242A1 (en) | 2014-02-27 |
| AU2012281242B2 true AU2012281242B2 (en) | 2016-12-22 |
Family
ID=46579302
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2012281242A Ceased AU2012281242B2 (en) | 2011-07-08 | 2012-07-09 | Sequence based genotyping based on oligonucleotide ligation assays |
Country Status (8)
| Country | Link |
|---|---|
| US (4) | US9777322B2 (enExample) |
| EP (2) | EP2729580B1 (enExample) |
| JP (1) | JP6028025B2 (enExample) |
| AU (1) | AU2012281242B2 (enExample) |
| CA (1) | CA2840929C (enExample) |
| DK (1) | DK2729580T3 (enExample) |
| ES (1) | ES2556580T3 (enExample) |
| WO (1) | WO2013009175A1 (enExample) |
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| US20130261003A1 (en) | 2010-08-06 | 2013-10-03 | Ariosa Diagnostics, In. | Ligation-based detection of genetic variants |
| US10533223B2 (en) | 2010-08-06 | 2020-01-14 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
| US8700338B2 (en) | 2011-01-25 | 2014-04-15 | Ariosa Diagnosis, Inc. | Risk calculation for evaluation of fetal aneuploidy |
| US20120034603A1 (en) | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
| EP2729580B1 (en) * | 2011-07-08 | 2015-09-16 | Keygene N.V. | Sequence based genotyping based on oligonucleotide ligation assays |
| DK2828218T3 (da) | 2012-03-20 | 2020-11-02 | Univ Washington Through Its Center For Commercialization | Methods of lowering the error rate of massively parallel dna sequencing using duplex consensus sequencing |
| WO2013192292A1 (en) * | 2012-06-21 | 2013-12-27 | Justin Lamb | Massively-parallel multiplex locus-specific nucleic acid sequence analysis |
| CN103958696B (zh) * | 2012-09-10 | 2017-10-13 | 天昊生物医药科技（苏州）有限公司 | 多重核酸分析 |
| US9270344B2 (en) * | 2013-02-01 | 2016-02-23 | Creating Revolutions, LLC | Combination process interaction |
| CA2901138A1 (en) * | 2013-03-12 | 2014-10-09 | Counsyl, Inc. | Systems and methods for prenatal genetic analysis |
| CN110283888B (zh) | 2013-08-19 | 2021-06-22 | 卓异生物公司 | 用于单分子检测的测定及其应用 |
| EP3149195B1 (en) | 2014-06-02 | 2018-12-05 | Base4 Innovation Ltd | Nucleotide polymorphism detection method |
| JP6793112B2 (ja) * | 2014-08-01 | 2020-12-02 | アリオサ ダイアグノスティックス インコーポレイテッドＡｒｉｏｓａ Ｄｉａｇｎｏｓｔｉｃｓ，Ｉｎｃ． | 胎児コピー数変異の統計的尤度を提供するアッセイ方法および胎児染色体異数性の尤度決定のためのアッセイ方法 |
| CN104372093B (zh) | 2014-11-10 | 2016-09-21 | 博奥生物集团有限公司 | 一种基于高通量测序的snp检测方法 |
| CN107735497B (zh) * | 2015-02-18 | 2021-08-20 | 卓异生物公司 | 用于单分子检测的测定及其应用 |
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| PT3387152T (pt) | 2015-12-08 | 2022-04-19 | Twinstrand Biosciences Inc | Adaptadores, métodos e composições melhorados para sequenciamento duplex |
| EP3565906B1 (en) * | 2017-01-05 | 2021-01-27 | Tervisetehnoloogiate Arenduskeskus AS | Quantifying dna sequences |
| CA3050247A1 (en) | 2017-01-18 | 2018-07-26 | Illumina, Inc. | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
| US11447818B2 (en) | 2017-09-15 | 2022-09-20 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
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| US11639928B2 (en) | 2018-02-22 | 2023-05-02 | 10X Genomics, Inc. | Methods and systems for characterizing analytes from individual cells or cell populations |
| CN112041462B (zh) * | 2018-03-23 | 2024-06-07 | 德克萨斯州立大学董事会 | 具有极低的错误水平的dsDNA有效测序 |
| CA3102892A1 (en) | 2018-06-12 | 2019-12-19 | Keygene N.V. | Nucleic acid amplification method |
| KR20210059694A (ko) | 2018-07-12 | 2021-05-25 | 트윈스트랜드 바이오사이언시스, 인코포레이티드 | 게놈 편집, 클론 팽창 및 연관된 분야를 규명하기 위한 방법 및 시약 |
| EP3906320A4 (en) * | 2019-01-04 | 2022-10-19 | William Marsh Rice University | QUANTITATIVE AMPLICON SEQUENCE FOR DETECTING MULTIPLEXIZED COPY NUMBER VARIATIONS AND ALLEL RATIO QUANTIZATION |
| CN113474466A (zh) | 2019-02-21 | 2021-10-01 | 主基因有限公司 | 多倍体基因分型 |
| EP4028545A4 (en) * | 2019-09-09 | 2023-10-25 | Sherlock Biosciences, Inc. | SYSTEM |
| EP4028585A1 (en) * | 2019-09-12 | 2022-07-20 | GlaxoSmithKline Intellectual Property Development Limited | Method for screening libraries |
| EP4298244A1 (en) | 2021-02-23 | 2024-01-03 | 10X Genomics, Inc. | Probe-based analysis of nucleic acids and proteins |
| WO2023081373A1 (en) * | 2021-11-04 | 2023-05-11 | Florida State University Research Foundation, Inc. | Using hairpin formation to identify dna and rna sequences having a target nucleic acid sequence |
| CN117987521A (zh) * | 2023-02-08 | 2024-05-07 | 深圳市真迈生物科技有限公司 | 测序方法 |
| CN118006735B (zh) * | 2023-05-30 | 2025-07-04 | 深圳赛陆医疗科技有限公司 | 一种snp芯片及其制备方法和应用 |
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-
2012
- 2012-07-09 EP EP12738652.2A patent/EP2729580B1/en active Active
- 2012-07-09 ES ES12738652.2T patent/ES2556580T3/es active Active
- 2012-07-09 JP JP2014518468A patent/JP6028025B2/ja active Active
- 2012-07-09 US US14/131,181 patent/US9777322B2/en active Active
- 2012-07-09 DK DK12738652.2T patent/DK2729580T3/en active
- 2012-07-09 AU AU2012281242A patent/AU2012281242B2/en not_active Ceased
- 2012-07-09 EP EP15185310.8A patent/EP2980226A1/en not_active Withdrawn
- 2012-07-09 WO PCT/NL2012/050493 patent/WO2013009175A1/en not_active Ceased
- 2012-07-09 CA CA2840929A patent/CA2840929C/en active Active
-
2017
- 2017-08-22 US US15/683,063 patent/US10422001B2/en active Active
-
2019
- 2019-08-13 US US16/539,119 patent/US10988807B2/en active Active
-
2021
- 2021-03-22 US US17/208,728 patent/US11873529B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| CA2840929C (en) | 2020-03-24 |
| JP2014520525A (ja) | 2014-08-25 |
| EP2729580A1 (en) | 2014-05-14 |
| WO2013009175A1 (en) | 2013-01-17 |
| EP2980226A1 (en) | 2016-02-03 |
| JP6028025B2 (ja) | 2016-11-16 |
| EP2729580B1 (en) | 2015-09-16 |
| CA2840929A1 (en) | 2013-01-17 |
| US20210207213A1 (en) | 2021-07-08 |
| ES2556580T3 (es) | 2016-01-19 |
| US10988807B2 (en) | 2021-04-27 |
| US9777322B2 (en) | 2017-10-03 |
| AU2012281242A1 (en) | 2014-02-27 |
| US20140221217A1 (en) | 2014-08-07 |
| US11873529B2 (en) | 2024-01-16 |
| DK2729580T3 (en) | 2015-12-14 |
| US10422001B2 (en) | 2019-09-24 |
| US20180023135A1 (en) | 2018-01-25 |
| US20200071757A1 (en) | 2020-03-05 |
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