CA2840929C - Sequence based genotyping based on oligonucleotide ligation assays - Google Patents
Sequence based genotyping based on oligonucleotide ligation assays Download PDFInfo
- Publication number
- CA2840929C CA2840929C CA2840929A CA2840929A CA2840929C CA 2840929 C CA2840929 C CA 2840929C CA 2840929 A CA2840929 A CA 2840929A CA 2840929 A CA2840929 A CA 2840929A CA 2840929 C CA2840929 C CA 2840929C
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- Canada
- Prior art keywords
- sequence
- probes
- probe
- target
- sequencing
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
- C12Q1/683—Hybridisation assays for detection of mutation or polymorphism involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161505787P | 2011-07-08 | 2011-07-08 | |
| US61/505,787 | 2011-07-08 | ||
| PCT/NL2012/050493 WO2013009175A1 (en) | 2011-07-08 | 2012-07-09 | Sequence based genotyping based on oligonucleotide ligation assays |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2840929A1 CA2840929A1 (en) | 2013-01-17 |
| CA2840929C true CA2840929C (en) | 2020-03-24 |
Family
ID=46579302
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2840929A Active CA2840929C (en) | 2011-07-08 | 2012-07-09 | Sequence based genotyping based on oligonucleotide ligation assays |
Country Status (8)
| Country | Link |
|---|---|
| US (4) | US9777322B2 (enExample) |
| EP (2) | EP2729580B1 (enExample) |
| JP (1) | JP6028025B2 (enExample) |
| AU (1) | AU2012281242B2 (enExample) |
| CA (1) | CA2840929C (enExample) |
| DK (1) | DK2729580T3 (enExample) |
| ES (1) | ES2556580T3 (enExample) |
| WO (1) | WO2013009175A1 (enExample) |
Families Citing this family (37)
| Publication number | Priority date | Publication date | Assignee | Title |
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| US10533223B2 (en) | 2010-08-06 | 2020-01-14 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
| US20130040375A1 (en) | 2011-08-08 | 2013-02-14 | Tandem Diagnotics, Inc. | Assay systems for genetic analysis |
| US20120034603A1 (en) | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
| US20130261003A1 (en) | 2010-08-06 | 2013-10-03 | Ariosa Diagnostics, In. | Ligation-based detection of genetic variants |
| US8700338B2 (en) | 2011-01-25 | 2014-04-15 | Ariosa Diagnosis, Inc. | Risk calculation for evaluation of fetal aneuploidy |
| US11203786B2 (en) | 2010-08-06 | 2021-12-21 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
| AU2012281242B2 (en) * | 2011-07-08 | 2016-12-22 | Keygene N.V. | Sequence based genotyping based on oligonucleotide ligation assays |
| ES2828661T3 (es) | 2012-03-20 | 2021-05-27 | Univ Washington Through Its Center For Commercialization | Métodos para reducir la tasa de error de la secuenciación de ADN masiva en paralelo mediante el uso de la secuenciación de secuencia consenso bicatenaria |
| WO2013192292A1 (en) * | 2012-06-21 | 2013-12-27 | Justin Lamb | Massively-parallel multiplex locus-specific nucleic acid sequence analysis |
| WO2014036743A1 (en) * | 2012-09-10 | 2014-03-13 | Genesky Diagnostics (Suzhou) Inc. | Method for multiplex nucleic acid analysis |
| US9270344B2 (en) * | 2013-02-01 | 2016-02-23 | Creating Revolutions, LLC | Combination process interaction |
| JP2016513461A (ja) * | 2013-03-12 | 2016-05-16 | カウンシル，インコーポレーテッド | 出生前遺伝子分析システム及び方法 |
| MX371428B (es) | 2013-08-19 | 2020-01-30 | Singular Bio Inc | Ensayos para la deteccion de una sola molecula y uso de los mismos. |
| CN106460057A (zh) * | 2014-06-02 | 2017-02-22 | 贝斯4创新公司 | 核苷酸多态性检测方法 |
| KR20170036727A (ko) * | 2014-08-01 | 2017-04-03 | 아리오사 다이어그노스틱스, 아이엔씨. | 혼성화를 이용한 표적 핵산 검출 방법 |
| CN104372093B (zh) | 2014-11-10 | 2016-09-21 | 博奥生物集团有限公司 | 一种基于高通量测序的snp检测方法 |
| AU2016219943A1 (en) * | 2015-02-18 | 2017-10-12 | Singular Bio, Inc. | Assays for single molecule detection and use thereof |
| GB2536446B (en) * | 2015-03-17 | 2020-06-03 | Salisbury Nhs Found Trust | PCR method |
| US10844428B2 (en) * | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
| US10689690B2 (en) | 2015-08-13 | 2020-06-23 | Centrillion Technology Holdings Corporation | Library construction using Y-adapters and vanishing restriction sites |
| PL3387152T3 (pl) | 2015-12-08 | 2022-05-09 | Twinstrand Biosciences, Inc. | Ulepszone adaptory, sposoby i kompozycje do sekwencjonowania dupleksowego |
| WO2018127408A1 (en) * | 2017-01-05 | 2018-07-12 | Tervisetehnoloogiate Arenduskeskus As | Quantifying dna sequences |
| US10844429B2 (en) | 2017-01-18 | 2020-11-24 | Illumina, Inc. | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
| US11447818B2 (en) | 2017-09-15 | 2022-09-20 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
| ES2977793T3 (es) | 2017-11-08 | 2024-08-30 | Twinstrand Biosciences Inc | Reactivos y adaptadores para la secuenciación de ácidos nucleicos y métodos para fabricar dichos reactivos y adaptadores |
| US11639928B2 (en) * | 2018-02-22 | 2023-05-02 | 10X Genomics, Inc. | Methods and systems for characterizing analytes from individual cells or cell populations |
| EP3768853A4 (en) * | 2018-03-23 | 2021-04-28 | Board Of Regents The University Of Texas System | EFFICIENT SEQUENCING OF DSDNA WITH EXTREMELY LOW ERROR RATE |
| WO2019238765A1 (en) | 2018-06-12 | 2019-12-19 | Keygene N.V. | Nucleic acid amplification method |
| WO2020014693A1 (en) | 2018-07-12 | 2020-01-16 | Twinstrand Biosciences, Inc. | Methods and reagents for characterizing genomic editing, clonal expansion, and associated applications |
| CA3125458A1 (en) * | 2019-01-04 | 2020-07-09 | William Marsh Rice University | Quantitative amplicon sequencing for multiplexed copy number variation detection and allele ratio quantitation |
| WO2020169830A1 (en) | 2019-02-21 | 2020-08-27 | Keygene N.V. | Genotyping of polyploids |
| CA3153533A1 (en) * | 2019-09-09 | 2021-03-18 | Sherlock Biosciences, Inc. | System |
| CA3151872A1 (en) * | 2019-09-12 | 2021-03-18 | Glaxosmithkline Intellectual Property Development Limited | Method for screening libraries |
| CN120158497A (zh) | 2021-02-23 | 2025-06-17 | 10X基因组学有限公司 | 基于探针的核酸和蛋白质分析 |
| WO2023081373A1 (en) * | 2021-11-04 | 2023-05-11 | Florida State University Research Foundation, Inc. | Using hairpin formation to identify dna and rna sequences having a target nucleic acid sequence |
| CN117987521A (zh) * | 2023-02-08 | 2024-05-07 | 深圳市真迈生物科技有限公司 | 测序方法 |
| CN118006735B (zh) * | 2023-05-30 | 2025-07-04 | 深圳赛陆医疗科技有限公司 | 一种snp芯片及其制备方法和应用 |
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| AU2012281242B2 (en) * | 2011-07-08 | 2016-12-22 | Keygene N.V. | Sequence based genotyping based on oligonucleotide ligation assays |
-
2012
- 2012-07-09 AU AU2012281242A patent/AU2012281242B2/en not_active Ceased
- 2012-07-09 ES ES12738652.2T patent/ES2556580T3/es active Active
- 2012-07-09 CA CA2840929A patent/CA2840929C/en active Active
- 2012-07-09 EP EP12738652.2A patent/EP2729580B1/en active Active
- 2012-07-09 WO PCT/NL2012/050493 patent/WO2013009175A1/en not_active Ceased
- 2012-07-09 DK DK12738652.2T patent/DK2729580T3/en active
- 2012-07-09 JP JP2014518468A patent/JP6028025B2/ja active Active
- 2012-07-09 US US14/131,181 patent/US9777322B2/en active Active
- 2012-07-09 EP EP15185310.8A patent/EP2980226A1/en not_active Withdrawn
-
2017
- 2017-08-22 US US15/683,063 patent/US10422001B2/en active Active
-
2019
- 2019-08-13 US US16/539,119 patent/US10988807B2/en active Active
-
2021
- 2021-03-22 US US17/208,728 patent/US11873529B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| JP6028025B2 (ja) | 2016-11-16 |
| CA2840929A1 (en) | 2013-01-17 |
| US9777322B2 (en) | 2017-10-03 |
| AU2012281242A1 (en) | 2014-02-27 |
| DK2729580T3 (en) | 2015-12-14 |
| ES2556580T3 (es) | 2016-01-19 |
| EP2729580B1 (en) | 2015-09-16 |
| EP2729580A1 (en) | 2014-05-14 |
| US10422001B2 (en) | 2019-09-24 |
| US20180023135A1 (en) | 2018-01-25 |
| EP2980226A1 (en) | 2016-02-03 |
| US10988807B2 (en) | 2021-04-27 |
| AU2012281242B2 (en) | 2016-12-22 |
| WO2013009175A1 (en) | 2013-01-17 |
| US20200071757A1 (en) | 2020-03-05 |
| US20210207213A1 (en) | 2021-07-08 |
| US11873529B2 (en) | 2024-01-16 |
| US20140221217A1 (en) | 2014-08-07 |
| JP2014520525A (ja) | 2014-08-25 |
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