EP1941276A1 - Procédé pour la détermination d une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique et son application - Google Patents

Procédé pour la détermination d une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique et son application

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Publication number
EP1941276A1
EP1941276A1 EP05797778A EP05797778A EP1941276A1 EP 1941276 A1 EP1941276 A1 EP 1941276A1 EP 05797778 A EP05797778 A EP 05797778A EP 05797778 A EP05797778 A EP 05797778A EP 1941276 A1 EP1941276 A1 EP 1941276A1
Authority
EP
European Patent Office
Prior art keywords
samples
binding
analytes
measurement
reagents
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP05797778A
Other languages
German (de)
English (en)
Inventor
Michael Pawlak
Eginhard Schick
Miro Venturi
Markus Ehrat
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Bayer AG
Original Assignee
Bayer Technology Services GmbH
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Bayer Technology Services GmbH filed Critical Bayer Technology Services GmbH
Priority to EP10171762A priority Critical patent/EP2269724A1/fr
Publication of EP1941276A1 publication Critical patent/EP1941276A1/fr
Withdrawn legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/543—Immunoassay; Biospecific binding assay; Materials therefor with an insoluble carrier for immobilising immunochemicals
    • G01N33/54366—Apparatus specially adapted for solid-phase testing
    • G01N33/54373—Apparatus specially adapted for solid-phase testing involving physiochemical end-point determination, e.g. wave-guides, FETS, gratings
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6452—Individual samples arranged in a regular 2D-array, e.g. multiwell plates
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/648—Specially adapted constructive features of fluorimeters using evanescent coupling or surface plasmon coupling for the excitation of fluorescence
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/543—Immunoassay; Biospecific binding assay; Materials therefor with an insoluble carrier for immobilising immunochemicals
    • G01N33/54306—Solid-phase reaction mechanisms
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S436/00—Chemistry: analytical and immunological testing
    • Y10S436/807—Apparatus included in process claim, e.g. physical support structures
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S436/00—Chemistry: analytical and immunological testing
    • Y10S436/807—Apparatus included in process claim, e.g. physical support structures
    • Y10S436/809—Multifield plates or multicontainer arrays

Definitions

  • the present invention relates to a method for detecting one or more analytes in one or more complex samples of biological origin
  • a detection method based on bioaffinity reactions can be carried out both in a homogeneous solution and on the surface of a solid support.
  • washing steps are necessary in each case in order to prepare the complexes formed from the recognition elements and the analytes to be detected and optionally further detection substances from the rest of the sample and optionally used additional reagents to separate.
  • microarrays both for the detection of nucleic acids and other biopolymers, such as proteins
  • a plurality of different specific recognition elements immobilized in discrete measuring ranges for generating an array for the analyte recognition and then to examining sample with the therein (optionally in a complex mixture) present analyte with this so-called “capture array” is brought into contact.
  • different specific recognition elements are each present in a highly pure form in different discrete measurement ranges, so that different analytes from the sample generally bind to measurement ranges with different recognition elements.
  • This type of known assays requires that the specific recognition elements to be immobilized in as highly purified a form as possible are purified and enriched by means of, in some cases, very complicated work steps. Because different There are also corresponding differences in the conditions for optimal immobilization of these recognition elements, for example by adsorption or covalent bonding, in discrete measurement areas on a common recognition elements more or less strong in their physicochemical properties (eg in their polarity) solid support, optionally on a primer layer applied thereon.
  • the immobilization conditions (such as the type of adhesion-promoting layer) chosen for immobilizing a multiplicity of different recognition elements hardly at the same time represent an optimum for all recognition elements, but merely a compromise between the immobilization properties of the different recognition elements.
  • the immobilization conditions such as the type of adhesion-promoting layer
  • a common problem with such methods of analyte detection using microarrays, and more generally surface detection methods relying on the specific binding of binding reagents as specific binding partners to the analytes to be detected is the occurrence of nonspecific binding events that are not due to the specific interaction between Analytes and the binding reagents used for their detection and optionally further detection reagents are based.
  • U.S. Patent No. 5,726,064 discloses various methods of compensating for interference in the assay signals by background signals, such as background fluorescence, which may be due, in particular, to non-specific binding events, as well as changes in temperature or pH which could affect the observed assay signals. described. In essence, these methods rely on providing additional areas designated for such compensation purposes, besides the areas designated for generation of the assay signals, on a common solid support.
  • US Patent Application 2004/0043508 A1 describes the extent of specific and nonspecific binding to different surfaces for the preparation of capture arrays treated with different materials to minimize non-specific binding Called coatings.
  • this stated condition can, inter alia, be selected carefully the recognition elements and the binding and detection reagents used in the assay are largely met.
  • the object of the present invention is to provide a method for such assays with arrays of measurement areas in which complex samples of biological origin with immobilized, to be detected analytes were immobilized, which allows the proportion of unspecific interaction with the added binding reagents and determine with the optionally added Detektionsreagentien generated optical signals at the outgoing of the measuring ranges signals.
  • the present invention solves the even more general problem of determining the absolute levels of one or more analytes in immobilized, complex composite samples of biological origin and calibrating the signals resulting from binding of binding reagents to the analytes to be detected.
  • the preparation of calibration curves for analytes from binding in supplied samples to their detection elements immobilized in capture arrays, by the addition of a suitable number of calibration solutions containing the appropriate analytes in appropriate concentrations, is well known
  • the international applications WO 01/092870 and WO 02/40998 propose that in each case one or more arrays immobilize a plurality of measuring regions with there in a different, controlled density biological or biochemical or synthetic recognition elements for the detection of a common seed analytes are provided.
  • the invention also makes it possible to determine the relative and / or absolute amount or relative and / or absolute concentration of analytes contained in the immobilized, complex composite samples with high accuracy for the type of arrays used here as well.
  • Fig. 1 carrier with 6 arrays of measuring ranges for the inventive method. Lattice structures for light coupling and light extraction are indicated on the left and right of the arrays. The cut-out magnification shows the geometric arrangement of the measuring ranges in a single array. - For the meaning of the measuring range contents key figures see Tab. 1.
  • FIG. 2 referenced fluorescence intensities (RFI) from measurement areas with a purified Akt applied therein with the additional presence of 0.1 mg / ml BSA or 0.1 mg / ml rat serum in the immobilization solutions, as a function of the Akt concentration immobilization solutions.
  • Filled symbols Calibration curves generated without competitor in the solution of the binding reagent (antibody "anti-Akt", 5 nM), empty symbols: Measurement curve generated with 100 nM Akt as competitor in the solution of the binding reagent.
  • FIG. 4 referenced fluorescence intensities for the detection of endogenous Akt in samples prepared from rat heart tissue, with purified act additionally added (upper curve) and without (middle curve) (1000 ng / ml), as a function of the total protein concentration of the immobilization solutions (upper abscissa) , Additionally entered is the calibration curve of FIG. 2 for the detection of Akt, created with measurement ranges additionally containing 0.1 mg / ml BSA (as a function of the Akt concentration, lower abscissa).
  • FIG. 5 referenced fluorescence intensities for the detection of endogenous Akt in samples prepared from rat heart tissue, with purified act additionally added (upper curve) and without (middle curve) (1000 ng / ml), as a function of the total protein concentration of the immobilization solutions (upper abscissa) , Filled symbols: measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-Akt", 5 nM); empty symbols: measured values obtained from measurement with 100 nM purified act as competitor in the solution of the binding reagent (antibody "anti-Akt”). Act ", 5 nM).
  • FIG. 5 shows at the protein concentration of 0.1 mg / ml from the comparison of the measured values in the presence and absence of the competitor in solution (FIG. 6a) and the determination of the content of endogenous act from the comparison of the by specific binding (FIG. "SB") caused signal component with the calibration curve (Fig.62b).
  • FIG. 7 referenced fluorescence intensities for the detection of endogenous Akt in samples prepared from rat heart tissue, with (nude curves) and without (middle curves) additionally added purified act (1000 ng / ml), as a function of the total protein concentration of the immobilization solutions (upper abscissa) , Filled symbols: measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-Akt", 5 nM); empty symbols: measured values obtained from measurement with 0.1 mg / ml rat serum as competitor for non-specific binding in the solution of the binding reagent ( Antibody "anti-Akt", 5 nM).
  • FIG. 9 referenced fluorescence intensities (RFI) from measurement areas with a purified Akt applied therein with additional presence of 0.1 mg / ml BSA or 0.1 mg / ml rat serum in the immobilization solutions, as a function of the concentration of the immobilization solutions on P-Akt (Ser473) , Filled symbols: Calibration curves generated without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Ser473) ", 5 nM), empty symbols: Measurement curve generated with 0.1 mg / ml rat serum as a competitor for non-specific binding in the solution of the binding reagent.
  • FIG. 10 Referenced fluorescence intensities for the detection of endogenous P-Akt (Ser473) in samples prepared from rat heart tissue, with purified act (1000 ng / ml) additionally added (top curve) and without (middle curve), as a function of the total protein concentration of Immobilization solutions (upper abscissa).
  • the calibration curve from FIG. 7 for the detection of P-Akt (Ser473) is established, with measurement ranges additionally containing 0.1 mg / ml BSA (as a function of the concentration of P-Akt (Ser473), lower abscissa).
  • FIG. 11 referenced fluorescence intensities for the detection of endogenous P-Akt (Ser473) in samples prepared from rat heart tissue, with purified act (1000 ng / ml) additionally added (upper curve) and without (middle curve), as a function of the total protein concentration of Immobilization solutions (upper abscissa).
  • Filled symbols measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Ser473)", 5 nM): empty symbols: measured values obtained from measurement with 100 nM of purified Akt as competitor in the solution of the binding reagent (Antibody "anti-P-Akt (Ser473)", 5 nM).
  • FIG. 12 Determination of the portions of the signals from FIG. 11 caused by specific binding at a protein concentration of 0.1 mg / ml from the comparison of the measured values in the presence and absence of the competitor in solution (FIG. 12a) and the determination of the content an endogenous act from the comparison of the signal fraction caused by specific binding ("SB") with the calibration curve (FIG. 12b).
  • Fig. 13 referenced fluorescence intensities for the detection of endogenous P-Akt (Ser473) in samples prepared from rat heart tissue, with (upper curves) and without (middle curves) additionally added purified act (1000 ng / ml), as a function of Total protein concentration of the immobilization solutions (upper abscissa).
  • Filled symbols measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Ser473)", 5 nM); empty symbols: measured values obtained from measurement with 0.1 mg / ml rat serum as a competitor for non-specific binding in the solution of the binding reagent (antibody "anti-P-Akt (Ser473)", 5 nM).
  • FIG. 14 referenced fluorescence intensities (RFI) from measurement areas with a purified Akt applied thereto with additional presence of 0.1 mg / ml BSA or 0.1 mg / ml rat serum in the immobilization solutions, as a function of the assumed concentration of the immobilization solutions on P-Akt (Thr308 ).
  • Filled symbols Calibration curves generated without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Thr308)", 5 nM), empty symbols: Measurement curve generated with 100 nM Akt as competitor in the solution of the binding reagent.
  • FIG. 15 referenced fluorescence intensities (RFI) from measurement areas with a purified Akt applied thereto with additional presence of 0.1 mg / ml BSA or 0.1 mg / ml rat serum in the immobilization solutions, as a function of the assumed concentration of the immobilization solutions on P-Akt (Thr308 ).
  • Completed symbols Calibration curves generated without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Thr308)", 5 nM), empty symbols: Measurement curve generated with 0.1 mg / ml rat serum as competitor for non-specific binding in the solution of the binding reagent ,
  • FIG. 16 Referenced fluorescence intensities for the detection of endogenous P-Akt (Thr308) in samples prepared from rat heart tissue, with purified act (1000 ng / ml) additionally added (upper curve) and without (middle curve), as a function of the total protein concentration of Immobilization solutions (upper abscissa). Additionally entered is the calibration curve from FIG. 12 for the detection of P-Akt (Thr3O8), prepared with measuring ranges additionally containing 0.1 mg / ml BSA (as a function of the assumed concentration of P-Akt (Thr308), lower abscissa).
  • FIG. 17 Referenced fluorescence intensities for the detection of endogenous P-Akt (Thr308) in samples prepared from rat heart tissue, with purified act (1000 ng / ml) additionally added (upper curve) and without (middle curve), as a function of the total protein concentration of Immobilization solutions (upper abscissa).
  • Filled symbols Measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Thr308)", 5 nM): empty symbols: measured values obtained from measurement with 100 nM of purified Akt as competitor in the solution of the binding reagent (Antibody "anti-P-Akt (Thr308)", 5 nM). Also included are the calibration curve of Fig.
  • FIG. 18 Determination of the portions of the signals from FIG. 17 caused by specific binding at a protein concentration of 0.1 mg / ml from the comparison of the measured values in the presence and absence of the competitor in solution.
  • FIG. 19 referenced fluorescence intensities for the detection of endogenous P-Akt (Thr3O8) in samples prepared from rat heart tissue, with purified act (1000 ng / ml) additionally added (top curves) and without (middle curves), as a function of total protein concentration Immobilization solutions (upper abscissa).
  • Filled symbols Measured values obtained from measurement without competitor in the solution of the binding reagent (antibody "anti-P-Akt (Thr308)", 5 nM); empty symbols: measured values obtained from measurement with 0.1 mg / ml rat serum as competitor for non-specific binding in the solution of the binding reagent (antibody "anti-P-Akt (Thr308) t", 5 nM).
  • the calibration curve of Fig. 12 is plotted for the detection of P-Akt (Thr308 ⁇ with ranges additionally containing 0.1 mg / ml BSA (filled symbols, as a function of the assumed concentration of P-Akt (Thr308), lower abscissa) and a corresponding calibration curve prepared with 0.1 mg / ml rat serum as competitor Non-specific binding in the solution of the binding reagent (empty symbols, as a function of the assumed concentration of P-Akt (Thr308), lower abscissa).
  • spatially separated or discrete measurement areas are to be defined on a solid support through the closed area, the complex samples of biological origin applied there or applied referencing reagents (such as fluorescently labeled albumin) or calibration reagents or their applied mixtures.
  • referencing reagents such as fluorescently labeled albumin
  • calibration reagents or their applied mixtures can have any geometry, for example the shape of circles, rectangles, triangles, ellipses, etc.
  • the first object of the present invention is a method for detecting one or more analytes in one or more samples of biological origin that are complexly composed, comprising the following steps:
  • step (4) spatially resolved measurement of first optical signals emanating from discrete measurement areas of one or more arrays brought into contact with the first solution in step (4), (6) Recording of these first optical signals, characterized in that the proportion of optical signals generated by nonspecific interaction with the added binding reagents and with the optionally added detection reagents on the measured first optical signals is determined by carrying out the further steps:
  • a second solution comprising, in addition to the one or more binding reagents and optionally one or more detection reagents of the first solution added in step (4), a known high concentration of compounds which are similar to those complexed in discrete measurement ranges Specimens of biological origin containing analytes to be detected are, as competitors to the analyte to be detected contained in discrete measurement areas of complex composite samples of biological origin to the specific binding of said binding reagents and optionally additionally added detection reagents, on one or more of the arrays generated in step (3) of discrete measuring ranges and / or
  • a third solution comprising, in addition to the one or more binding reagents and optionally one or more detection reagents of the first solution added in step (4), a known high concentration of substances of similar type as in the sample matrix of step (3) substances applied to applied samples are substances of the sample matrix containing non-specific binding of said binding reagents and, if appropriate, additionally added detection reagents, competing with the complex samples of biological origin deposited in discrete measuring ranges, on one or more of the arrays produced in step (3) discrete measuring ranges,
  • steps (7a) and (7b) Comparison of the first and second and / or third optical signals.
  • the addition of the binding reagents and the substances added to the competition, as well as the optional detection reagents can be carried out in the form of the addition of a single solution of these three groups of components.
  • the second or third solutions of mixtures of the binding reagents and the substances used for the competition be applied, optionally followed by one or more washing steps and a subsequent separate sub-step of addition of the detection reagents ,
  • solid support or “solid support” is intended to include the meaning of “the at least one solid support” or “at least one solid support”.
  • first solution second solution
  • third solution are intended to include the meaning of “plurality of first solutions”, “plurality of second solutions” and “plurality of third solutions”, respectively, with solutions within such a variety of solutions each may have the same or different composition.
  • sample is also used herein to mean “complexly assembled sample of biological origin” unless otherwise stated.
  • designation of a “sample” in the singular includes the designation of a “plurality of samples”, unless otherwise noted.
  • Said complex composite samples of biological origin may be selected from the group of samples consisting of lysates of Zeil populations, cell extracts, body fluids and constituents of body fluids such as blood, serum, plasma, synovial fluid, tear fluid, urine, salivary fluid, tissue fluid and lymph, which may be fractionated or unfractionated samples.
  • the samples may be derived from healthy and / or diseased and / or stimulated and / or untreated cells from the group comprising human, animal, bacterial and plant cells.
  • said complex composite samples of biological origin can be obtained from animal or human tissue, such as organ, skin, hair, muscle, fat or bone tissue.
  • Different samples may have been taken from the same organism or cell culture. Then, for example, statistical information on the reproducibility of the relative molecular composition of the applied samples determined in these measurement ranges can be obtained by analysis over several measurement ranges with material contained therein from the same (or a similar) organism or the same cell culture (or similar cell cultures) become.
  • Different samples can be taken in particular at different positions of the same organism. Then, for example, information about inhomogeneities in the relative molecular composition of the analytes to be detected in the organism from which said samples were taken can be obtained from the analyzes on the corresponding discrete measuring ranges. Such an approach is of great importance, for example, for the study of cancerous organisms.
  • samples may also be taken from different organisms or different cell cultures. For example, these may be samples of drug-treated and untreated organisms. Similar to an expression analysis in the nucleic acid analysis, the influence of the respective active substance on the relative molecular composition of the samples, i. in particular the composition of the multiplicity of compounds expressed by the underlying cell populations.
  • the cells are typically lysed in a first treatment step.
  • the lysates may be dissolved in a suitable solvent, for example a buffer solution, and contain known added admixtures, for example stabilizers such as protease inhibitors, to prevent degradation of contained biopolymers.
  • the lysates are prepared and processed such that a sample obtained therefrom (ie complexly assembled sample of biological origin) contains the entire proteome of Zeil lines, Zeil cultures or Zeil tissues from which it was obtained .
  • a sample obtained therefrom ie complexly assembled sample of biological origin
  • An important field of application of the method according to the invention is the investigation of samples comprising cell lysates or prepared from cell lysates for cellular analyte expression (ie in particular protein expression) under different conditions.
  • the samples to be applied in the measuring ranges may be selected in different ways.
  • Zeil populations which come from different locations within an organism or organ, such as cancerous and healthy tissue from the same organ.
  • the term shall also include Zeil populations taken from the same organism or organ at different times and / or different treatments after removal in an in vitro cultivation process,
  • a differential expression profile can be generated by means of samples obtained from such independent cell populations in order to detect differences in the cellular
  • Organisms between different organs, etc. Of particular interest is the influence of the treatment or stimulation of cell populations on the cellular
  • treatment or “stimulation” is intended to include the addition of chemical or biochemical compounds (reagents or “drugs”) to the cell populations concerned as well as the application of different external physical conditions, for example in the form of irradiation with light from the ultraviolet to infrared spectrum, heat, exposure to electromagnetic
  • the method according to the invention is also suitable for investigating the effects of less precisely definable internal or external influencing factors, such as stress, disease, aging, type of diet, etc. on cellular expression and / or activation (see below).
  • Another possible variant is based on the use of different cell lysates, which were generated by different cell subpopulations, which in turn were obtained from a common cell population.
  • different cell subpopulations can be generated by sampling from a common cell population at different times.
  • Various cell subpopulations may also be obtained by sampling from a common cell population and subsequent treatment or stimulation by different reagents and / or culturing under different external conditions (eg to study the influence of UV light irradiation, heat shock, etc.). ) be generated.
  • Typical reagents used for the treatment of cell populations for the aforementioned and other possible variants for the application of the method according to the invention include pharmaceutically active compounds, cytokines, cell-stimulating antigens, cell death-inducing stimulators, hormones, etc.
  • complex samples obtained from Zeil populations whose expression is to be compared using the method according to the invention are each applied in a common array of measuring ranges, in order to be able to examine the samples under as uniform conditions as possible for the analytes to be detected.
  • a sample may contain additions of known concentrations of similar compounds (as standards) to the analyte to be detected, comparable to spiking samples in chromatography. Such additives may be useful, for example, for calibration purposes.
  • the samples may contain additions of compounds similar to the sample matrix but different from the analytes to be detected, such as albumins (eg, bovine serum albumin (BSA), immunoglobulins, or diluted serum, for example, the controlled adjustment of the surface density of immobilized analyte molecules in one Measuring range can serve.
  • albumins eg, bovine serum albumin (BSA)
  • immunoglobulins e.g, immunoglobulins, or diluted serum
  • Analytes contained in the samples or their fractions or the dilutions of said samples or fractions may be present in native or denatured form after treatment with, for example, urea or surfactants (eg SDS).
  • urea or surfactants eg SDS
  • in particular insoluble constituents of the source material or intermediate material may be removed in the case of several preparatory steps before providing the complexly assembled samples of biological origin by suitable means, for example centrifugation in the case of lysates as intermediate material.
  • the starting materials are not subjected to further pretreatment steps as filtration and / or fractionation and / or dilution to produce a "complexly assembled sample of biological origin".
  • the analytes contained in the samples or their fractions or in the dilutions of said samples or fractions i. in particular biopolymers such as proteins, e.g. B. after treatment with urea, in denatured form, wherein the epitopes of these analytes for the binding of their respective detection substances, such as antibodies, are as freely accessible.
  • biopolymers such as proteins, e.g. B. after treatment with urea
  • denatured form wherein the epitopes of these analytes for the binding of their respective detection substances, such as antibodies, are as freely accessible.
  • denatured samples also have the advantage that arrays generated from them are very stable and can be stored and archived for longer periods of time (up to years) for later analysis.
  • fractionated samples these may be obtained by a separation process, for example from the group of Trerm compiler, which precipitations, filtration, centrifugation, HPLC and micro-HPLC ("High Pressure Liquid Chromatography") by the method of "normal phase” -, “ Reverse Phase ", Ion Exchange and Hydrophobic Interaction Chromatography (HIC),” Size Exclusion Chromatography ", Gel Chromatography, Electrophoresis, capillary electrophoresis, electrochromatography, and “free-flow electrophoresis” includes.
  • Trerm compiler which precipitations, filtration, centrifugation, HPLC and micro-HPLC ("High Pressure Liquid Chromatography") by the method of "normal phase” -, “ Reverse Phase ", Ion Exchange and Hydrophobic Interaction Chromatography (HIC),” Size Exclusion Chromatography ", Gel Chromatography, Electrophoresis, capillary electrophoresis, electrochromatography, and “free-flow electrophoresis” includes.
  • said complex composite samples may comprise biological origin depleted serum.
  • depleted serum refers to those samples obtained from serum to which, for example by means of affinity chromatography, ingredients such as albumins, immunoglobulins and apolipoproteins have been extensively removed.
  • the material for a sample of biological origin complexed to be analyzed may have been obtained, for example, by a method from the group of sampling methods comprising tissue sections, biopsy and laser capture micro dissection.
  • the method according to the invention makes it possible to analyze even small sample volumes and volumes used with high accuracy.
  • the amount of sample should be understood to mean the total amount which is applied in a discrete measuring range.
  • the material of a sample to be applied in a measuring range may correspond to the material of less than 100 cells. It can even match the material of less than 10 cells.
  • the material applied in a measuring range of a complex composite sample of biological origin to be analyzed represents a volume of less than 100 nl, preferably less than 1 nl.
  • the analytes to be detected in the complex composite samples of biological origin applied in discrete measurement ranges may be compounds from the group consisting of proteins and their post-translationally modified protein forms such as phosphorylated, glycosylated, methylated and acetylated forms of proteins, in particular at cellular Signal transduction pathways involved and interacting proteins, such.
  • kinase substrates, receptors and binding proteins for peptides, hormones, cofactors, membrane receptors, channel receptors, T cell receptors and enzymes, and proteins and their posttranslational modified protein forms derived from different cell compartments, such as cytosolic proteins, nuclear proteins, membrane proteins , mitochondrial Proteins, and extracellular proteins, such as in body fluids excreted proteins, and especially under the influence of cellular treatment or stimulation over- or under-expressed proteins and artificially modified or expressed proteins, such as functionalized proteins with additional binding sites ("tag proteins", such as "histidine tag proteins"), mono- or polyclonal antibodies and antibody fragments, peptides, generated peptide fragments of whole proteins, glycopeptides, lectins, fluorescent proteins (such as "Green Fluorescent Protein", GFP and the like), avidin, streptavidin , Biotin, biotinylated proteins and other conjugated proteins, oligosaccharides and nucleic acids (eg DNA, RNA).
  • tag proteins such
  • analyte is to be understood as meaning a molecular species which, by means of a binding reagent used as a specific binding partner and optionally additionally used detection reagent, is differentiated and bound by other compounds contained in a sample to be analyzed according to this definition, both forms of this compound or species represent two different analytes. If any compounds or species are recognized and bound by an appropriate binding reagent, the corresponding binding reagent will only bind to the phosphorylated but not the unphosphorylated form of a compound or species to be detected, when phosphorylated, the corresponding phosphorylated compounds or species will accordingly together constitute an analyte under this condition.
  • Binding reagents as specific binding partners may be selected to recognize and bind solely to the phosphorylated or glycosylated (or non-glycosylated) form of a compound to be detected.
  • the activity of a biological pathway in a cell or organism can be correlated with the proportion of phosphorylated, methylated, acetylated or glycated compounds (depending on the nature of the signaling pathway) that control this pathway.
  • phosphorylation or degree of methylation or degree of acetylation or degree of glycosylation of this compound in the sample is hereinafter referred to as phosphorylation or degree of methylation or degree of acetylation or degree of glycosylation of this compound in the sample.
  • Phosphorylation degree, degree of methylation, degree of acetylation and degree of glycosylation can be summarized under the generic term of the degree of activation of a compound.
  • the degree of activation of a compound may also designate other chemically altered forms of a compound.
  • the erf ⁇ ndungswashe method is particularly well suited for the determination of the degree of activation of expressed proteins.
  • Binding reagents as specific binding partners may also be selected so that they only bind to a compound to be detected if it is present in a specific three-dimensional structure. For example, many antibodies recognize and bind only to specific subregions (epitopes) of a substance to be detected with a special three-dimensional structure. Depending on the conformation state of the corresponding compound to be detected, these subregions (epitopes) may be accessible or hidden for the binding of the corresponding binding reagent. However, the binding reagents may also be selected to bind to regions of the compound to be detected whose accessibility is independent of the three-dimensional structure of this compound. By using appropriately selected binding reagents, it is therefore possible to determine the relative proportion of the total amount of a compound to be detected in a sample which has a specific conformational state.
  • the method according to the invention makes it possible to detect proteins as analytes in the samples of biological origin applied in discrete measurement ranges according to their occurrence in phosphorylated and / or glycolated and / or methylated and
  • binding reagents are differentiated as specific binding partners and optionally additional detection reagents, and separately in detection step (5) according to claim 1 be detected as different analytes in the sense of the previous definition.
  • proteins which are to be detected as analytes in the complex samples of biological origin applied in discrete measurement ranges according to their occurrence in phosphorylated and / or glycolized, and / or methylated and / or acetylated form in the applied complex compound
  • Samples of biological origin, in the course of step (4) according to claim 1 after binding thereof contacted binding reagents as specific binding partners and optionally additional detection reagents, not differentiated and in the detection step (5) according to claim 1 separately as different analytes, but together as a single analyte can be detected.
  • the method according to the invention makes it possible to determine the degree of activation (as defined above) of one or more analytes contained in an applied complex sample of biological origin (i.e., in particular of proteins contained).
  • the method of phosphorylation and / or degree of methylation and / or degree of acetylation and / or degree of glycosylation of one or more analytes (in particular proteins) contained in an applied sample can be determined with said method.
  • the binding reagents used as specific binding partners for the analyte to be detected contained in discrete measurement areas in the applied complex composite samples of biological origin for example, be selected from the group of compounds which proteins, for example monoclonal or polyclonal antibodies and antibody fragments, peptides, enzymes, enzyme inhibitors , Kinase substrates, aptamers, synthetic peptide structures, glycopeptides, hormones, cofactors, oligosaccharides, lectins, antigens for antibodies or T cell receptors, biotin, avidin, streptavidin, additional functionalized proteins (tag proteins, such as histidine Tag proteins ”) and their complexing partners as well as nucleic acids (for example DNA, PvNA, oligonucleotides) and nucleic acid analogues (eg PNA) and their derivatives with artificial bases.
  • proteins for example monoclonal or polyclonal antibodies and antibody fragments, peptides, enzymes, enzyme inhibitors , Kinase substrates
  • Detecting reagents employed may be selected from a first group comprising polyclonal or monoclonal antibodies and antipodal fragments, nucleic acids and nucleic acid derivatives and their derivatives with artificial bases, biotin, avidin, streptavidin and neutravidin.
  • the detection reagents may also be selected from a second group comprising mass labels, for example in the form of nanoparticles, beads or colloids, and luminescent labels, for example in the form of luminescent dyes or luminescent nanoparticles such as "quantum dots" with excitation and emission wavelengths between 200 nm and 1000 nm, wherein said mass labels or luminescent labels are attached to or attached to the binding reagents or bound to detection reagents of the aforementioned first group of detection reagents or specifically bind or attach to said detection reagents of the first group of detection reagents or to the complexes between the detection moieties
  • Analytes which are contained in the complex composite samples of biological origin applied in discrete measurement areas and binding reagents bound thereto as specific binding partners are formed, bind or attach e function of the detection reagents include.
  • luminescence in this application refers to the spontaneous emission of photons in the ultraviolet to infrared range after optical or non-optical, such as electrical or chemical or biochemical or thermal excitation.
  • chemiluminescence, bioluminescence, electroluminescence and in particular fluorescence and phosphorescence are included under the term "luminescence”.
  • a preferred variant of the method according to the invention is that said
  • Binding reagents as specific binding partners compounds which are similar to the analyte contained in discrete measurement areas applied complexly assembled samples of biological origin and optional
  • Binding Reagents as Specific Binding Partners, Substances of Similar Kind as in
  • Sample matrix of substances contained in discrete measurement areas in step (3) complex complex samples of biological origin are, and optional
  • Detektionsreagentien a third solution are each preincubated with each other and said first, second or third solution is then brought into contact with said arrays of measurement areas in a single addition step.
  • a possible variant of the method according to the invention is characterized in that different analytes are detected in a common array of measuring ranges by adding distinguishable detection reagents to said array. It is preferred that the number of different analytes to be detected is equal to the number of differentiable detection reagents used. It is particularly preferred if distinguishable detection reagents differ in the excitation and / or emission wavelength of a luminescence.
  • a multiplicity of different analytes in a multiplicity of arrays of discrete measurement ranges is added by adding different binding reagents as specific binding partners to determine different analytes on different arrays of discrete measurement ranges and / or by adding distinguishable detection reagents said arrays of measuring ranges are detected.
  • Characteristic of a further possible variant is that different binding reagents are applied as specific binding partners for different analytes to different arrays for each different analyte to be detected.
  • arrays of measuring areas with complexly assembled samples of biological origin applied therein comprise those measuring ranges in which known concentrations of compounds, which are of the same type as the analytes to be detected, have been added to the applied material.
  • arrays of measurement areas comprise a number of measurement areas in which different known concentrations of compounds which are of the same type as the analytes to be detected have been added as standards to the applied material, the number of such measurement areas and the amount thereof being more widely known Concentrations is sufficient to, by means of a single addition step of a first solution containing binding reagents as specific binding partners and optionally also contained Detektionsreagentien, according to Step (4) according to claim 1 of the method according to the invention, and the subsequent steps (5) and (6) according to claim 1 to produce a calibration curve for the determination of unknown concentrations of said analytes to be detected in the array.
  • the addition of the binding reagents and the optional detection reagents according to step (4) of the process according to the invention in a single addition step or in separate substeps, optionally with intervening washing steps occur.
  • the material to which the standards for analyte determination have been added may include, for example, only the components of the buffer solution used, added sample matrix-like compounds such as albumins (especially bovine serum albumin), immunoglobulins or diluted serum.
  • a plurality of similar arrays of measurement areas are arranged on a solid support, wherein equal positions of measurement areas in different arrays, with respect to arrangement in rows and columns, mean that similar samples have been applied there.
  • the various solutions namely the first solution with binding reagents contained therein and optionally additionally contained Detektionsreagentien, the second solution with therein additionally contained, the analyte similar compounds such as competitors and a third solution with added compounds which in the sample matrix of in
  • the various solutions namely the first solution with binding reagents contained therein and optionally additionally contained Detektionsreagentien, the second solution with therein additionally contained, the analyte similar compounds such as competitors and a third solution with added compounds which in the sample matrix of in
  • the various solutions namely the first solution with binding reagents contained therein and optionally additionally contained, the analyte similar compounds such as competitors and a third solution with added compounds which in the sample matrix of in
  • a first, preferred possible embodiment is characterized in that the addition of a first solution according to step (4) and measurement and recording first first optical signals from the measuring ranges of this array according to the steps (5) and (6) according to claim 1 and adding second and / or third solutions, according to the steps (7a) and (7b) and subsequent measurement and recording of the emanating from the measuring ranges of the respective arrays signals according to the steps (8) and (9) according to claim 1 on different similar arrays of measurement ranges, where equal positions of measurement ranges in different arrays, with respect to arrangement in rows and columns, mean that similar samples have been applied there.
  • first, second and third solutions can be applied sequentially, each time a sufficient number of regeneration and washing steps have been carried out, on the same array of measuring regions (or the same plurality of measuring regions). Is intended to "regeneration" while such an intermediate step to be understood, in which by addition, suitable complex-destructive reagents.
  • the preferably to be used concentrations of compounds which are similar to the applied in discrete measurement areas complex composite samples of biological origin, to be detected analytes and as competitors to the applied in discrete measurement areas complex composite samples of biological origin, to be detected analytes to the specific binding of said binding reagents and optionally additionally added Detektionsreagentien are used in the applied second solution depending on the expected surface concentrations of said analytes in the measuring ranges and the equilibrium constants of the binding reactions between said analyte and their binding or Detektionsreagentien.
  • the binding reagents are in hundredfold to thousandfold dilution of From the supplier related stock solutions.
  • such stock solutions are available with a content of typically 0.5-1 mg / ml, corresponding to concentrations in the range of 1-10 ⁇ M.
  • the detection reagents are used in a comparable concentration range, ie typically 1-10 nM, as well as the binding reagents.
  • the competitors eg, phosphorylated peptide epitopes
  • the competitors will be at least ten times better a hundredfold excess, compared to the concentrations of the binding reagents used.
  • the substances used as competitors for non-specific compounds of a similar nature as substances contained in the sample matrix of complex samples of biological origin are typically given a total protein content of 10 ⁇ g / ml to 500 ⁇ g / ml of these third solutions (corresponding to step (7b) of the method according to the invention).
  • the erfmdungsgeniäße method makes it possible to determine the signal components caused by non-specific interaction or non-specific binding measured in the measuring ranges, due to specific binding and additional non-specific binding generated total signals, in two ways.
  • the first possibility is that the proportion of optical signals produced by unspecific interaction with the added binding reagents and optionally with the added detection reagents on the measured first optical signals according to claim 1 from the difference in step (8), after addition of the second solution in accordance with step (7a), measured optical signals and the optical signals measured according to step (5), after addition of the first solution according to step (4).
  • the second possibility is characterized in that the proportion of optical signals generated by unspecific interaction with the added binding reagents and optionally with the added detection reagents on the measured first optical signals according to claim 1 from the difference of step (8), after addition of the third Solution according to step (7b), measured optical signals and according to step (5), after addition of the first solution according to step (4), measured optical signals is determined.
  • arrays of measurement areas comprise a number of measurement areas in which different known concentrations of compounds which are the same as the analytes to be detected have been added to the applied material as standards
  • the number of such measuring ranges and the amount of said different known concentrations is sufficient to of a single addition step of a first solution with binding reagents contained therein as specific binding partners and optionally also contained Detektionsreagentien, according to step (4) according to claim 1, and the subsequent steps (5) and (6) according to claim 1, a calibration curve for the determination of unknown concentrations of said To produce analyte to be detected in the array, the erfmdungsdorfe method, the (relative and / or absolute) concentration or (relative and / or absolute) amount of an analyte in a applied in a measuring range complex composite sample of biological origin from the difference between the and the proportion of optical signal produced by non-specific interaction with the added binding reagents and optionally with the added detection
  • Characteristic of the inventive method is also due to its high sensitivity and high accuracy and Reproduzierbarkait, especially due to a variety of simultaneously or alternatively usable, independent reference and calibration methods that differences, preferably less than 20%, more preferably less than 10% in which (relative and / or absolute) concentration or (relative and / or absolute) amount of an analyte can be determined in different complex samples of biological origin, which are applied in different measuring ranges.
  • the method according to the invention is also suitable for examining the time course (ie the changes) of the amounts or concentrations of analytes (to be detected in the complexly assembled samples of biological origin) under the influence of the disease of a biological organism or a cell culture and / or the external influence of an organism or a cell culture, for example by treatment or stimulation with a biologically active compound ("drug") or by external physical action such as, for example, irradiation with light Wavelength of the ultraviolet to infrared spectrum, influence of radioactivity or heat.
  • a biologically active compound drug
  • external physical action such as, for example, irradiation with light Wavelength of the ultraviolet to infrared spectrum, influence of radioactivity or heat.
  • a further possible embodiment of the method according to the invention is therefore characterized in that a sample and one or more comparison samples the. are taken at different times and that changes over time in the amounts or concentrations of one or more analytes contained in these samples are determined.
  • the term "the same place of origin” should be understood to mean the same organism or a similar organism or the same cell culture or similar cell culture (in each case after different lengths of similar disease or influence)
  • the method according to the invention allows temporal changes in the concentration or amount of said Analytes of less than 20%, preferably less than 10%, prove.
  • the simplest form of immobilization of the complexes of biological origin on a solid support to be examined is by physical adsorption, for example due to hydrophobic interactions with the surface of the solid support.
  • these interactions can be greatly altered in their extent by the composition of the solutions to be applied in the further course of the process and their physico-chemical properties, such as polarity and ionic strength.
  • the adhesiveness of the complex-assembled samples or their constituents may be insufficient after purely adsorptive immobilization on the surface. It is therefore preferred that on the solid support, to improve the adhesion of the samples to be applied in discrete measurement areas, an adhesion-promoting layer is applied, on which the samples are then applied.
  • the thickness of the adhesion-promoting layer is preferably less than 200 nm, more preferably less than 20 nm.
  • the primer layer may comprise compounds selected from the group consisting of silanes, functionalized silanes, epoxies, functionalized, charged or polar polymers, and "self-assembled" passive or functionalized mono- and polyfunctional Multilayers, thiols, alkyl phosphates and phosphonates, and multifunctional block copolymers such as poly (L) lysine / polyethylene glycols.
  • binding or detection reagents it is advantageous to "passivate" regions between the discrete measurement regions to minimize non-specific binding of binding or detection reagents, i. that between the spatially separated measurement areas opposite, said binding reagents and / or detection reagents "chemically neutral", i. these non-binding components are applied.
  • these non-binding components may be selected from the groups consisting of albumins, in particular bovine serum albumin and human serum albumin, casein, unspecific, polyclonal and monoclonal, non-specific and empirical for the analyte or antibodies to be detected antibodies (in particular for immunoassays), detergents - such as Tween 20 - fragmented natural and synthetic DNA not hybridizing with polynucleotides to be analyzed, such as an extract of herring or salmon sperm (especially for polynucleotide hybridization assays), and also uncharged but hydrophilic polymers such as polyethylene glycols or dextranes ,
  • Suitable for the application of the complexly assembled samples of biological origin directly on the solid support or on a previously applied to the carrier primer layer are a variety of known methods, which may be selected, for example, from the group of methods of "ink jet spotting", mechanical Spotting by means of pin, spring or capillary, "Micro contact printing", fluidic contacting of the measuring ranges with said samples by their supply in parallel or crossed microchannels, under the influence of pressure differences or electrical or electromagnetic potentials and photochemical and photolithographic immobilization is formed.
  • the arrays of measurement areas preferably represent one- or two-dimensional arrangements of discrete measurement areas.
  • the achievable density of measurement areas within an array of measurement areas and number of measurement areas on a common solid support is essentially determined by the spatial resolution of the used Application method determined.
  • an array comprises more than 50, preferably more than 500, more preferably more than 5000 measuring ranges.
  • each measuring range may contain an identical or different immobilized sample to other measuring ranges.
  • the measuring ranges of an array are arranged in a density of more than 10, preferably of more than 100, particularly preferably of more than 1000 measuring ranges per square centimeter.
  • Such an embodiment of the method according to the invention is advantageous, which is characterized in that a multiplicity of arrays of measuring regions are arranged on the solid support.
  • at least 5, preferably at least 50 arrays of measuring ranges can be arranged on the carrier. It is particularly advantageous when different arrays of measuring ranges are arranged in different sample containers.
  • International Patent Applications WO 01/13096 and WO 01/43875 describe how a solid support designed as an evanescent field sensor platform is combined as a base plate with a suitable attachment body for generating a suitable array of sample containers, each for receiving an array of measurement areas can be.
  • 2 - 2000, preferably 2 - 400, more preferably 2 - 100 sample containers are arranged on the common, continuous solid support.
  • the sample containers be stored in a grid, i. a sequence in rows and / or columns, which is compatible with the grid of standard microtiter plates.
  • An industrial standard is an arrangement of 8 x 12 wells with a (center-to-center) distance of about 9 mm established. This is compatible with smaller arrays with, for example, 3, 6, 12, 24 and 48 sample containers equidistant. It is also possible to combine a plurality of such smaller arrays of sample containers in such a way that, after their connection, the mutual distance is an integer multiple of the spacing of approximately 9 mm.
  • plates with 384 and 1536 wells, as integer multiples of 96 wells on the same footprint with en strictlyend reduced corrugation (about 4.5 mm or 2.25 mm), used, which are also referred to as standard microtiter plates should.
  • the arrangement of sample containers as part of the erf ⁇ ndungsgefflessen kit can also be adapted to this geometry.
  • an experimental design is made possible, which can be described as "multidimensional": For example, in the rows and columns of an array different samples, for example from different organisms (eg corresponding columns), Different arrays of measuring areas with samples immobilized therein, in different sample containers, can then be combined with different first and / or second or third solutions with binding reagents and, if appropriate, detection reagents for determining different immobilized Analytes in different arrays can be brought in. It is obvious that with such a variant of a carrier an almost unlimited number of different experiments can be carried out.
  • the solid support on which the arrays of discrete measurement regions are created be substantially planar.
  • substantially planar is meant that, other than, for example, structures possibly created on the surface facing the measuring regions, such as depressions or protrusions for creating devices for sample containers, this surface has a macroscopic ripple of less than 100 microns per centimeter of expansion has any axis in the plane of its surface.
  • the solid support is not porous.
  • “Non-porous” is intended to mean that said support has no continuous porous structure and its 1 (microscopic) surface roughness of less than 1 micron.
  • the surface roughness of the solid support is less than 20 nm, more preferably less than 2 nm.
  • the optical carrier is substantially optically transparent at least at the wavelength of an excitation light or measurement light directed towards measurement regions during the detection steps of the method according to the invention.
  • excitation light should be understood to mean that this light serves as an energy source for a secondary emission (collectively referred to as “emission light”), such as fluorescence or general luminescence or Raman radiation or, for example, for excitation of a surface plasmone in a metal layer can be measured with a suitable detector.
  • emission light such as fluorescence or general luminescence or Raman radiation
  • measuring light is to be understood as meaning that this also serves to interact with the carrier and / or with analytes to be detected or their binding partners for the purpose of analyte detection, but that no spectral changes of this measuring light or a secondary emission are to be investigated, but, for example, changes the setting parameter (such as the resonance angle for coupling into a sheet waveguide by means of a grating structure, see below) or the propagation parameter of this light (such as the phase difference between light fractions, the different optical paths, such as the measuring path of an interferometer and the reference path, without interaction with a sample, go through) are measured.
  • setting parameter such as the resonance angle for coupling into a sheet waveguide by means of a grating structure, see below
  • propagation parameter of this light such as the phase difference between light fractions, the different optical paths, such as the measuring path of an interferometer and the reference path, without interaction with a sample, go through
  • substantially optical transparency of a material, layer or solid support at a particular wavelength is meant that the run length of one in said material or in said layer or in said support or in the (high refractive) waveguiding layer is considered to be optical Waveguide trained carrier light guided at the wavelength in question is greater than 2 mm, provided that this run length is not limited by structures for changing the propagation direction of said light.
  • the run length for example, of optically visible light, ie the distance on the path of light in the corresponding material up to the decrease of the light intensity to a value 1 / e of the original intensity when the light enters this material, on the order of several centimeters (eg in thin-film waveguides) up to meters or kilometers (in the case of light guides for optical signal transmission).
  • the propagation length of a light guided in the waveguiding layer can be limited to a few micrometers by a coupling-out diffractive grating (formed in the waveguiding layer, see below).
  • this limitation of the run length is due to the structuring, and not by the material properties of the structure.
  • such a grating waveguide structure should be referred to as "substantially optically transparent" if the run length of the light outside the regions of the grating structures is more than 2 mm.
  • the material of an optionally applied on the solid support adhesion-promoting layer at least at the wavelength ein ⁇ s irradiated excitation light or measuring light is substantially optically transparent.
  • the material of the solid support preferably comprises a material from the group consisting of silicates, such as glass or quartz, ceramics, metal oxides, plastics, in particular thermoplastics, such as polycarbonates, acrylates, polyacrylates, in particular polymethyl methacrylates, polystyrenes, cyclo-olefin polymers and cyclo- Olefm copolymers and their combinations (mixtures and / or laminations). It is preferred that said plastics are shaped, embossed, sprayed and / or milled and - for applications using luminescence detection - have the lowest possible intrinsic fluorescence. It is preferred that said materials meet the requirement for substantially optical transparency at least at the wavelength of an incident excitation light or measurement light.
  • embodiments of the solid support are desired, which are characterized in that it comprises several layers with different optical properties.
  • the solid support comprises a thin metal layer, preferably comprising gold, silver or aluminum.
  • the carrier comprises a further intermediate layer with a refractive index ⁇ 1.5, for example of silicon dioxide or magnesium fluoride, which is in contact with the metal layer.
  • the thickness of the metal layer and the possible intermediate layer is selected so that a surface plasmon can be excited at the wavelength of an incident excitation light and / or at the wavelength of a generated luminescence.
  • the thickness of the metal layer is preferably between 10 nm and 1000 ⁇ m, particularly preferably between 30 nm and 200 nm.
  • At least the layer of the solid support which is in contact with the measurement areas directly or via an adhesion-promoting layer is substantially optically transparent at least at the wavelength of an incident excitation light or measurement light
  • the solid support may comprise components of the group comprising microscope slides, microtiter plates, nanotiter plates, filters (e.g., comprising paper), membranes (e.g., nitrocellulose membranes), and microstructured supports (e.g., honeycomb structures or perforated structures Silicon). Similar to the established microtiter plates (with typically 96, 384 or 1536 sample containers), nanotiter plates are similarly structured arrangements of open sample containers but of small dimensions (typically of the order of microns instead of millimeters).
  • a particularly preferred embodiment of a solid support suitable for the method according to the invention is characterized in that the solid support comprises an optical waveguide which is continuous or divided into discrete waveguiding regions, comprising one or more layers.
  • the excitation or measuring light is directed by one or more polychromatic or monochromatic light sources to one or more measuring ranges of one or more arrays of measuring ranges and optical signals from said measuring ranges and / or changes or differences in the optical signals emanating from said measuring ranges are spatially resolved measured and recorded.
  • the excitation or measuring light has a wavelength between 200 nm and 1200 nm.
  • the light sources used are those with a narrow emission spectrum. Particularly preferred light sources are laser diodes and lasers.
  • a spatially resolving detector for spatially resolved signal detection, preferably a spatially resolving detector is used which, for example, can be selected from the group comprising CCD cameras, CCD chips, photodiode arrays, avalanche diode arrays, multichannel plates and multichannel photomultipliers.
  • Optical systems and their components as well as optical detection methods suitable for the detection steps of the method according to the invention are described, for example, in International Applications WO 95/33197, WO 95/33198 and WO 96/35940, the contents of which are hereby incorporated in their entirety as part of the present invention.
  • the changes or differences in optical signals to be measured are based on local differences of the effective refractive index at the surface of the solid support facing the measurement areas or within a distance of less than 1 ⁇ m from said surface of said solid support can be caused by binding of binding reagents and / or detection reagents to analytes contained in discrete measurement ranges in the complex composite samples of biological origin applied there.
  • a sub-variant of this embodiment of the method according to the invention is characterized in that the spatially resolved changes or differences of optical signals are based on local differences of the resonance conditions for producing a surface plasmon in a thin metal layer as part of said solid support.
  • said change in the resonance conditions may also consist of a change in the resonance wavelength of an incident excitation light to produce a surface plasmone in a thin metal layer as part of the solid support, in which case the angle of incidence (which is at least one wavelength of a spectrally varied radiation incident on the support Light should be equal to the resonance angle) is preferably kept constant.
  • the solid support comprises a thin-film optical waveguide having a first substantially optically transparent layer (a) on a second substantially optically transparent layer (b), wherein layer (a) has a higher refractive index than layer (b) and is in direct or mediated contact with the measurement areas via an adhesion promoting layer.
  • the second optically transparent layer (b) comprise a material from the group which silicates, such as glass or quartz, ceramics, metal oxides, plastics, especially thermoplastics, such as polycarbonates, acrylates, polyacrylates, especially polymethyl methacrylates, polystyrenes, cyclo Olefin polymers and cyclo-olefin copolymers and combinations thereof (blends and / or laminations).
  • silicates such as glass or quartz, ceramics, metal oxides, plastics, especially thermoplastics, such as polycarbonates, acrylates, polyacrylates, especially polymethyl methacrylates, polystyrenes, cyclo Olefin polymers and cyclo-olefin copolymers and combinations thereof (blends and / or laminations).
  • plastics are shaped, embossed, sprayable and / or milled and, for applications using luminescence detection, have the lowest possible intrinsic fluorescence.
  • said materials meet the requirement for substantially optical transparency at least at
  • the refractive index of the first optically transparent layer (a) is larger than 1.8. It is also preferable that the first optically transparent layer (a) is a material selected from the group consisting of silicon nitride, TiO 2 , ZnO, Nb 2 O 5, Ta 2 O 5 , HfO 2 , and ZrO 2 , more preferably TiO 2 2 , Ta 2 O 5 or Nb 2 O 5 .
  • Embodiments of (thin) layer waveguides suitable as solid support for the method according to the invention are described, for example, in International Patent Applications WO 95/33197, WO 95/33198 and WO96 / 35940.
  • excitation light or measurement light from one or more light sources be coupled into a waveguiding layer of the solid support via one or more optical coupling elements selected from the group formed by prism couplers, evanescent couplers with matched optical waveguides with overlapping evanescent fields, end face couplers with focusing lenses arranged in front of one end face of the waveguiding layer, preferably cylindrical lenses, and grating couplers.
  • the coupling of excitation light or measuring light into a waveguiding layer of the solid support takes place by means of one or more grating structures (c) which are formed in said waveguiding layer as surface relief gratings with a certain grating period and grating depth.
  • grating structures (c ') which are pronounced in said waveguiding layer and have the same or different period and grating depth as grating structures (c).
  • Another variant of the inventive method based on refractive methods is characterized in that the changes or differences of optical signals to local differences of the resonance conditions for the coupling of excitation light or measuring light of one or more light sources into a waveguiding layer of the solid support by means of a in this waveguiding layer pronounced grid structure based.
  • Analogously to the determination of changes of the resonance conditions for the generation of a surface plasmon resonance are for the determination of changes of the resonance conditions for the light coupling in a waveguiding layer on a grid therein expressed the resonance angle (with variation of the irradiation angle at constant wavelength of the incident light) and the resonance wavelength ( at constant angle of incidence and variation of the irradiated excitation wavelength) accessible.
  • said change in the resonance conditions may consist of a change in the resonance wave for the light coupling to be measured into a waveguiding layer of the solid support.
  • said change in the resonance conditions may also consist of a change in the resonance wavelength of an incident excitation light for light coupling into a waveguide layer of the solid support.
  • the angle of incidence (which equals at least one wavelength of spectrally varying light irradiated on the support should be the resonance angle) is preferably kept constant.
  • a plurality of luminescence labels with different spectral properties, in particular different emission wavelengths, are bound to different binding and / or detection reagents which are brought into contact with the measurement areas, different analytes within a single measurement area can be determined in a single detection step, ie contacting the Measuring ranges with said binding and / or Detektionsreagentien and simultaneous or subsequent detection of the luminescence generated, be determined.
  • such a variant of the method according to the invention is particularly well suited for simultaneously detecting, for example, the phosphorylated and non-phosphorylated form of a compound, in particular also within a single (common) measuring range, using two correspondingly different ones, for example directly (eg green or red emitting luminescence labels) of labeled binding reagents as specific binding partners.
  • two correspondingly different ones for example directly (eg green or red emitting luminescence labels) of labeled binding reagents as specific binding partners.
  • two or more different analytes can also be detected simultaneously within a single measurement range, if two or more luminescence labels with different emission decay times are used for analyte detection and, under suitable excitation conditions (ie pulsed or modulated light excitation), the detection of resulting luminescence occurs with a time resolution , which allows the distinction of luminescences with varying degrees of fading.
  • the irradiation of the excitation light takes place in pulses with a duration of between 1 fsec and 10 minutes and the emission light is measured in a time-resolved manner from the measuring ranges.
  • Excitation light of a light source is coupled into the layer (a) by means of a lattice structure (c) which is pronounced in the layer (a),
  • This excitation light is passed as a guided wave to directly on the layer (a) or mediated via an adhesion-promoting layer on the layer (a) located measuring areas and
  • Luminescences of luminescent compounds which are excited in the evanescent field of the guided in the layer (a) light for luminescence, are measured spatially resolved.
  • a particular variant consists in that, in addition to the determination of one or more luminescences, changes in the effective refractive index on the measurement areas are determined.
  • the one or more luminescences and / or determinations of light signals at the excitation wavelength are made polarization-selective. It is preferred that the one or more luminescences be measured at a different polarization than that of the excitation light.
  • Another object of the present invention is a microarray for the quantitative determination of one or more analytes in one or more complex samples of biological origin, comprising
  • a first plurality of discrete measurement areas in which small amounts of complexly assembled samples of biological origin are immobilized in dilute or undiluted form directly or via an adhesion-promoting layer characterized in that at least a second plurality of measurement areas in said array are provided on the solid support is, in which measuring ranges the substances to be detected are immobilized similar substances in different concentrations, which are suitable are by contacting the microarray with a first solution containing one or more binding reagents as specific binding partners for the analyte to be detected contained in the first plurality of discrete measurement areas in the applied complex composite samples of biological origin and those contained in the second plurality of discrete measurement areas, said analyte to be detected, and one or more detection reagents, where appropriate, may be applied simultaneously or sequentially, and subsequent spatially resolved measurement of first optical signals coming from discrete ranges of one or more arrays and recording of these first optical signals, a calibration curve for said samples contained in the immobilized complex, quantitatively to produce ativatable analytes.
  • a third plurality of measurement areas in said array is provided on the solid support, in which in each case small amounts of complexly composed samples of biological origin in diluted or undiluted form and in addition to these added known amounts of the same analytes similar substances to be detected are.
  • This third plurality can be used, for example, for the control function of the determination of the degree of "recovery", as is also the case in the following exemplary embodiment.
  • a further development of the microarray according to the invention is that a fourth plurality of measurement areas in said array is provided on the solid support in which substances similar in nature to the sample matrix of the samples deposited in the first plurality of measurement areas are immobilized ,
  • the measuring ranges of the second plurality of measuring ranges comprise substances which are similar in nature as in the sample matrix of the samples applied in the first plurality of measuring ranges.
  • the substances which are similar in nature as in the sample matrix of the samples applied in the first plurality of measuring ranges can, for example, from the Group comprising albumins, in particular bovine serum albumin, immunoglobulins, transferrins and fibrinogens.
  • a fifth plurality of measurement areas in said array be provided on the solid support for purposes of referencing.
  • the measuring regions of the fifth plurality of measuring regions comprise substances which are selected from the group which include mass labels, for example in the form of nanoparticles, beads or colloids, and luminescent labels, for example in the form of luminescent dyes or luminescent nanoparticles "Quantum Dots" with excitation and emission wavelengths between 200 nm and 1000 ⁇ m.
  • a further subject of the present invention is a method for the quantitative determination of one or more analytes in a complexly assembled sample of biological origin comprising the following steps:
  • first optical signals emanating from the first and second plurality of discrete measurement regions of the microarray recording of the first optical signals from the first plurality of discrete measurement regions as signals characteristic of their contacting with the first solution, recording of the first optical signals from the first second plurality of discrete measuring ranges than for their contacting with the first solution as a function of the concentration of the substances contained in the said measuring ranges, the analytes contained in the complex composite samples similar substances, characteristic signals,
  • the invention also includes the use of a microarray according to the invention and
  • biomarkers biological or chemical marker substances
  • Polymorphisms for the measurement of protein-DNA interactions, for the determination of
  • the method according to the invention is suitable because of the high number of tests carried out simultaneously on a common carrier under the same conditions, in particular for affinity screening, ie for comparing the affinities of different binding partners to a specific binding partner common to them, in particular of different antibodies to a common antigen.
  • the use of the method according to the invention for the preparation of cellular expression profiles and their comparison This relates in particular to the comparison of cellular expression profiles of diseased and healthy cell populations, with and without their stimulation.
  • stimulation should be understood to mean the addition of chemical or biochemical compounds to said cell populations, as well as their treatment with different physical conditions, such as irradiation, heat, etc. Because of the high accuracy of the measurement results obtainable by the method according to the invention in particular also suitable for the investigation of the temporal development of cellular expression under the aforementioned conditions, over periods of, for example, minutes, hours, days, weeks, months or years.
  • the method according to the invention is particularly well suited for finding so-called biological or biochemical marker substances of the aforementioned kind, which are suitable for providing information on diseased cell populations in comparison to healthy cell populations, mutated or modified cell populations in comparison to wild-type cell populations or Influencing cellular populations through their stimulation or treatment.
  • microarray according to the invention and the methods according to the invention are explained below by way of example. Examples:
  • the analytes to be detected are the marker protein "Akt" of the intracellular Akt signaling pathway and two differently activated (phosphorylated) forms of this protein.
  • Act is a protein kinase and plays a key role in a variety of physiological processes, such as In the glucose metabolism, cell proliferation, cell differentiation and programmed cell death (apoptosis) Activation of the Akt occurs through phosphorylation of different amino acid side chains, including serine 473 and threonine 308.
  • Misregulation of the Akt signaling pathway and concomitant inhibition of programmed cell death a crucial role in the development of cancer, which is why this marker protein is of great therapeutic interest.
  • the analytical detection of Akt and its phosphorylated form en P-Akt (Ser473) and P-Akt (Thr308) is carried out by means of different specific antibodies that either bind to the protein regardless of its degree of phosphorylation, or only to certain phosphorylated forms, such as P-Akt (Ser473) or only at P-Akt (Thr308).
  • the detection of Akt and its phosphorylated form is carried out in this embodiment in an unfiltered lysate of rat heart tissue, which was prepared in a strongly denaturing, urea and detergents-containing lysis buffer and which contained the entire proteome of the cells therein.
  • rat serum containing no act was prepared in lysis buffer.
  • the solid supports used for the inventive method are pronounced as thin-film waveguides, each comprising a glass substrate (AF 45) as a substantially optically transparent layer (b) and one on it applied 150 nm thin, high-refractive layer of tantalum pentoxide, as substantially oütisch transparent sliding (a).
  • a glass substrate parallel to the length, two surface relief gratings (grating period: 318 nm, grating depth: (12 +/- 2) nm) are modulated at a distance of 9 mm.
  • these structures were called diffractive gratings the Lichteinkopplung in the high refractive layer (a) are intended to transfer into the surface of the tantalum pentoxide layer.
  • Such thin-film waveguides are particularly well suited for the method according to the invention, since they make it possible to detect near-surface bonding events with a high ratio of measuring signal to background signal, so that low detection limits can be achieved.
  • solid supports as mentioned above, such as, for example, micro-tip plates or else microtiter plates, are suitable for the method according to the invention.
  • DDP mono-dodecyl phosphate
  • Akt Phharmacia Italia Spa j Milan, Italy
  • endogenous Akt The purified act is also used to create calibration curves by addition in different immobilization solutions of different composition to be applied (see below).
  • spotting buffer Further dilution with a second, but also urea-containing, but detergent-free buffer ("spotting buffer”) solutions of the lysate of rat heart tissue with different total protein content (0.025 mg / ml, 0.050 mg / ml, 0.1 mg / ml, 0.2 mg / ml, 0.3 mg / ml, 0.4 mg / ml, 0.5 mg / ml) for application in individual measuring ranges, without changing the protein composition of the dilute solutions compared to the stock solution
  • the resulting solutions of different total protein concentration provide complex samples of biological origin to be examined (without further additions).
  • solutions of the lysate of rat heart tissue with equal total protein concentrations (0.025 mg / ml, 0.050 mg / ml, 0.1 mg / ml, 0.2 mg / ml, 0.3 mg / ml, 0.4 mg / ml, 0.5 mg / ml), but in addition, respectively 1000 ng / ml act, prepared.
  • the analyte detection (of Akt or its phosphorylated forms) is independent of the total protein concentration in the respective measurement range.
  • Akt solutions (0 ng / ml, 1 ng / ml, 3 ng / ml, 10 ng / ml, 30 ng / ml, 100 ng / ml, 300 ng / ml, 1000 ng / ml, 3000 ng / ml) in spotting buffer, each with the addition of 0.1 mg / ml bovine serum albumin (BSA).
  • BSA serves as a homogeneous sample matrix free of Akt, in which the act is to be immobilized on the support in discrete measurement ranges in accordance with the stated different concentrations of the immobilization solutions.
  • the microarrays also each comprise so-called “reference spots”.
  • Bovine serum albumin fluorescently labeled with Cy5 is present within each microarray (Cy5-BSA, labeling rate: 3 Cy 5 molecules per B SA molecule) immobilized. These ranges are used to refer to local differences in excitation light intensity within individual arrays as well as between different arrays.
  • Comparison spots Cy5-BSA is applied in each of these ranges at a concentration of 0.5 nM in urea-containing spotting buffer.
  • the free, non-protein-coated, hydrophobic surface regions of the carriers to passivate them with bovine serum albumin (BSA), as opposed to binding reagents and / or detection reagents "chemically neutral", ie this non-binding component, saturated by the Surfaces are incubated with a BSA-containing buffer solution for 30 minutes, after which the carriers with the measurement ranges generated thereon are washed with water (18 M ⁇ -cm) and finally dried in a stream of nitrogen and stored at 4 ° C. until the detection method according to the invention is carried out , 4.
  • BSA bovine serum albumin
  • the carriers provided with the arrays of measuring regions are each connected to an attachment body for producing a linear arrangement of 6 sample containers (each 15 ⁇ l internal volume) with the arrays of measuring regions arranged therein.
  • sample containers are described in International Applications WO 01/43875 and WO 02/103331, the contents of which are hereby incorporated in their entirety as part of the present application.
  • step (4) of the inventive method takes place in two substeps, wherein in each case one analyte per array of measuring ranges is detected.
  • the arrays of measurement areas in the sample containers are incubated with a solution of a primary antibody as a binding reagent ("anti-Akt” (# 9272) for total-Akt detection (without distinction of phosphorylated and non-phosphorylated forms), "anti-P -Act (Ser473) "(# 9271) for the detection of phosphorylated P-Akt (Ser473),” anti-P-Akt (Thr308) "(# 9275) for the detection of phosphorylated P-Akt (Thr308) (all antibodies from Cell Signaling Technologies, Beverly, USA) each in 500-fold dilution of the stock solution in assay buffer (corresponding to about 5 nM), incubated overnight at room temperature.
  • a primary antibody as a binding reagent "anti-Akt” (# 9272) for total-Akt detection (without distinction of phosphorylated and non-phosphorylated forms), "anti-P -Act (Ser473) "(# 9271) for the detection of phosphorylated P-Akt (Ser47
  • the arrays of measurement areas in each case in the second step with the detection reagent namely fluorescently labeled Alexa Fluor 647 anti-rabbit Fab fragments (Molecular Probes, Eugene, USA) also in 500-fold dilution of the stock solution in assay buffer, incubated for sixty minutes in the dark at room temperature.
  • the arrays of measurement areas are again washed with 200 ⁇ l of assay buffer to remove unbound detection reagents.
  • the carriers subjected to these process steps, connected to attachment bodies and thus produced buffer-filled sample containers are stored until the detection step by excitation and detection of resulting fluorescence signals in the ZeptoREADER TM (see below).
  • the analyte detection in the presence of a competitor similar to the analyte for the specific binding to the binding reagents used and optionally additional detection reagents also in two steps of addition to the solid support with the arrays of measuring ranges located thereon:
  • the solutions of the binding reagents ("anti -Akt “,” anti-P-Akt (Ser473) “or” anti-P-Akt (Thr308) ", in each case about 5 nM), each with an approximately 20-fold excess of Akt (5 ⁇ g / ml corresponding to 100 nM)
  • Akt antigen-binding sites of the analyte-specific antibodies
  • the analyte detection is carried out in the presence of added in addition to the binding reagents which are the same or as similar as possible in the sample matrix contained substances and serve as competitors to the immobilized in the measuring ranges constituents of the sample matrix for non-specific binding of the binding reagents.
  • the solutions of the binding reagents ("anti-Akt”, “anti-P-Akt (Ser473)” or “anti-P-Akt (Thr308)", each about 5 nM) are each pre-incubated with 0.1 mg / ml rat serum. Then, the serum-containing solutions prepared in this way are filled analogously to the first substep of 4.1 into a further sample container with a further, but similar array of measurement regions such as the array of measurement regions used in section 4.1 and incubated overnight, followed by a Washing step, the subsequent sub-step of adding the detection reagent and the other substeps as in 4.1. described.
  • the procedure according to this section 4.3. corresponds to sub-step (7b) of the method according to the invention.
  • the fluorescence signals from the measurement areas are determined by means of image analysis software (ZeptoVIEW TM, Pro 2.0 Release 2.0, Zeptosens AG, CH-4108 Witterswil). For each spot, the average signal intensity and the mean local background signal intensity in its immediate vicinity are determined. By subtracting the mean local background signal from the mean measured total signal intensity of the relevant spot, the background-corrected mean net signal intensity is determined for each spot.
  • the referencing of the net signal intensity of all spots is done using the Cy5-BSA reference spots.
  • the net signal intensities of the "sample spots” are divided by the averaged signal intensity of the next two adjacent “reference spots” extrapolated to the position of the respective "sample spot.” This referencing makes the local differences in the available excitation light intensity compensated within each array of ranges as well as between different arrays.
  • Segment 1 array rows I and II with measuring range content numbers 1 - 9 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified Akt in spotting buffer with additional 0.1 mg / ml BSA,
  • Segment 2 array series III and IV with measurement range contents numbers 13-21 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified Akt in spotting buffer with additional 0.1 mg / ml rat serum,
  • a solution of "anti-Akt” (5 nM) is introduced into a first sample container having a first array of measuring regions
  • the further partial process steps were described above under 4.1
  • the calibration curves of the segment 1 of measuring regions (produced with solutions containing different concentrations of Akt and 0.1 mg / ml BSA added to the spotting buffer (represented by solid squares) and segment 2 of measurement ranges (generated with 0.1 mg / ml rat serum added to solutions containing different concentrations of Akt and the spotting buffer) (represented by filled circles ) are shown in Fig. 2.
  • the calibration curves of measurement areas coincide with co-immobilized BSA and co-immobilized rat serum; at concentrations below 30 ng / ml, the calibration curve of co-immobilized rat serum measuring ranges has higher signal values than that with co-immobilized BSA.
  • the signal difference is attributed to the contribution of non-specific binding of the binding reagent to the components of the immobilized rat serum. With the addition of even higher concentrations of rat serum to the immobilization solution, the signal difference to measurement areas whose generating immobilization solutions were merely BSA added is even more pronounced.
  • the calibration curves are used, which were generated with the aid of immobilization solutions to which only BSA was added, as they a concentration determination even at low Akt concentrations, below 30 ng / ml, allow ..
  • the signal increase observed at the highest Akt concentrations (1000 ng / ml and 3000 ng / ml in the immobilization solution) is attributed to the fact that the competitor concentration in solution under these conditions is obviously not sufficient to allow specific binding of the binding reagent to immobilized Completely prevent act.
  • the solution of the antibody becomes rat serum with a total protein concentration of 0.1 mg / ml added.
  • This solution is then filled into a third sample container with a third array, again of a similar arrangement of the measuring ranges as the aforementioned first and second array, according to the procedure described in Section 4.3. Under these conditions, it is expected that the components will be retained by specific binding to signals generated on immobilized Akt and that the components will largely disappear due to non-specific binding to signals generated in the sample matrix.
  • FIG. 3 once again shows the calibration curve discussed in Section 7.1.1.a) with filled in symbols, which were generated without the addition of competitors to the binding reagents with the first array.
  • the signals obtained by adding the rat serum-containing solution of the antibody as a binding reagent to the third array are not measurably different from these calibration curves.
  • Detection of the total content of Akt in the rat heart tissue fabricated complex samples of biological origin is made on the segment of measurement ranges indicated by the measurement range item numbers 25 to 31.
  • the immobilization solutions generated to generate these ranges are from the same stock solution and were adjusted by dilution (see Section 3.) to different total protein concentrations (between 0.025 mg / ml and 0.5 mg / ml).
  • the segment of measurement ranges with the measurement range contents numbers 37 to 43 was generated by applying immobilization samples from a similar dilution series of the stock solution from the rat heart tissue lysate, but the immobilization samples were each added with purified Akt at a concentration of 1000 ng / ml.
  • the signals to be measured by this segment should serve as controls, whether by comparison of the fluorescence signals to be measured with the Calibration curve (created with measuring ranges with co-immobilized BSA) at the same total protein concentration (0.1 mg / ml) this high Akt concentration used (which is much higher than the expected natural endogenous Akt content) is recovered.
  • the measurement is carried out by adding a solution of "anti-Akt" (5 nM) in the first sample container with the first array of measuring ranges therein.
  • anti-Akt 5 nM
  • the results are shown in FIG.
  • the fluorescence signals from measurement areas in which immobilization solutions prepared from rat heart tissue are shown as a function of the total protein concentration (FIG. 4, upper abscissa axis), and the values of the referenced fluorescence signals of the calibration measurement with co-immobilized BSA (protein concentration: 0.1 mg / ml). are shown as a function of the Akt concentrations of the immobilization solutions used for these measurement ranges (FIG. 4, lower abscissa axis).
  • the signals from the measurement areas without added Akt initially increase as expected with increasing protein concentration and reach a maximum value starting at a protein concentration of 0.2 mg / ml. With further increasing protein concentration, no further signal increase is observed, similar to a saturation effect.
  • the signals from the measurement areas with 1000 ng / ml added Akt reach correspondingly very high values. From the comparison of the signal value with the simultaneously generated calibration curve at comparable total protein concentration (0.1 mg / ml, illustrated by the broken line at a protein concentration of 0.1 mg / ml and by the intersection of this line with the measurement curve for signals from measurement ranges of 1000 ng / ml of added Akt running in the direction of the calibration curve broken line), the 1000 ng / ml Akt concentration added to the sample with (840 ⁇ 70) ng / ml can be recovered and determined.
  • the achieved recovery rate (“recovery”) of 84% and precision of 8% is in the Within the generally tolerated limits of 80% - 120% recovery, or better than 20% precision in an assay. In this example, it is thus shown that analyte determination can be carried out with good assay accuracy and precision.
  • the high recovery value confirms that the measurement curve generated on 0.1 mg / ml measurement ranges of the BSA (protein matrix) added to the immobilization solutions is well suited to calibrate the readings of spots prepared from solutions of rat heart tissue lysates.
  • the rat heart tissue sample prepared at a protein content of 0.1 mg / ml, a content of (20 ⁇ 2) ng / ml endogenous act determined.
  • a second sample container is placed in a second array with a similar arrangement of the measurement areas as the first examined array is a mixture of the solution of the Antibody "anti-Akt" as a binding reagent filled with an excess of Akt (5 ug / ml corresponding to 100 nM) and incubated with the measuring ranges overnight, as described in 4.2 .. It is expected that under these conditions, the proportion by specific binding the antibody completely disappears from immobilized Akt, while the proportion of signals produced by non-specific binding remains.
  • the signals from the measurement areas for determining the endogenous act show a significant reduction.
  • the difference between the traces in the absence and in the presence of the competitor represents the signal portion which is caused by specific binding.
  • FIG. 6 illustrates the determination of the signal components caused by specific binding at a protein concentration of 0.1 mg / ml from the comparison of the measured values in the presence and absence of the competitor in solution (FIG. 6a) and the determination of the content of endogenous act from the comparison of FIG 6b)
  • the signal components (0.20 RFI) caused by non-specific binding (“NSB") are for signals from ranges with only endogenous Akt (0.373 RFI) and such with additionally added 1000 ng / ml purified Akt (about 20 RFI) within the measurement accuracy the same.
  • a content of (8.8 ⁇ 1.3) ng / ml determined endogenous act (Fig. 6b).
  • rat antibody with a total protein concentration of 0.1 mg / ml is added to the solution of the antibody.
  • This solution is then filled into a third sample container with a third array, again of a similar arrangement of the measuring ranges as the aforementioned first and second array, according to the procedure described in Section 4.3.
  • Segment 1 array rows I and II with span contents numbers 1 - 9 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified nude in spotting buffer with additional 0.1 mg / ml BSA,
  • Segment 2 array series III and IV with measurement range contents numbers 13-21 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified Akt in spotting buffer with additional 0.1 mg / ml rat serum,
  • a solution of anti-P-Akt (Ser473) (5 nM) is placed in a fourth sample container with a fourth array of measurement regions.
  • the further process steps were described above under 4.1.
  • the calibration curves of segment 1 of measuring ranges (generated with solutions containing different concentrations of Akt and the spotting buffer added 0.1 mg / ml BSA) of segment 2 of measuring ranges (generated with solutions containing different concentrations of Akt and the spotting buffer added 0.1 mg / ml rat serum) are shown in Figure 8 (solid symbols).
  • the calibration curves of measuring ranges coincide with co-immobilized BSA and co-immobilized rat serum; at concentrations below 10 ng / ml, the calibration curve of measurement ranges with co-immobilized rat serum has higher signal values than that with co-immobilized rat serum.
  • immobilized BSA The signal difference is attributed to the contribution of non-specific binding of the binding reagent to the components of the immobilized rat serum. With the addition of even higher concentrations of rat serum to the immobilization solution, the signal difference to measurement areas to which generating immobilizing solutions are added only BSA is even more pronounced.
  • the calibration curves are used, which were generated with the aid of immobilization solutions to which only BSA has been added, since they can be determined even at low Akt concentrations. below 10 ng / ml.
  • rat antibody with a total protein concentration of 0.1 mg / ml is added to the solution of the antibody.
  • This solution is then filled into a sixth sample container with a sixth array, again of a similar arrangement of the measuring ranges as the aforementioned arrays, according to the procedure described in Section 4.3.
  • P-Akt Ser473
  • FIG. 9 again shows, with filled-in symbols, the section 7.2. l.a), which were generated without the addition of competitors to the binding reagents with the fourth array.
  • the signals obtained by adding the rat serum-containing solution of the antibody as a binding reagent with the sixth array are not measurably different from these calibration curves.
  • the segment of measurement ranges with the measurement range contents numbers 37 to 43 was generated by applying immobilization samples from a similar dilution series of the stock solution from the rat heart tissue lysate, but the immobilization samples were each added with purified Akt at a concentration of 1000 ng / ml.
  • the signals to be measured by this segment should serve as controls, by comparing the fluorescence signals to be measured with the calibration curve for P-Akt (Ser473) (prepared with co-immobilized BSA) with the same total protein concentration (0.1 mg / ml) High level of total Akt (which is significantly higher than the expected natural endogenous Akt content) corresponding high level of P-Akt (Ser473) is recovered.
  • the measurement is carried out by adding a solution of "anti-P-Akt (Ser473)" (5 nM) to the fourth sample container with the fourth array of measuring regions contained therein ,
  • the results are shown in FIG.
  • the fluorescence signals from measurement areas in which immobilization solutions prepared from rat heart tissue are shown as a function of the total protein concentration (FIG. 10, upper abscissa axis), and the values of the referenced fluorescence signals of the calibration measurement with co-immobilized BSA (protein concentration: 0.1 mg / ml). are shown as a function of the concentrations of P-Akt (Ser473) of the immobilization solutions used for these ranges ( Figure 10, lower abscissa axis).
  • a fifth sample container is placed on a further array with a similar arrangement of the measurement areas as the other investigated arrays
  • Antibody "anti-P-Akt (Ser473)" (5 nM) as a binding reagent with an excess of Akt (5 ug / ml corresponding to 100 nM) filled and incubated with the measuring ranges overnight, as described in 4.2 .. It is expected that under these conditions the proportion of signals caused by specific binding of the antibody to immobilized P-Akt (Ser473) disappears, while the proportion remains due to non-specific binding of evoked signals.
  • the signals from the measuring ranges for determining the endogenous p473 act show a significant reduction.
  • the difference between the traces in the absence and in the presence of the competitor represents the signal portion which is caused by specific binding.
  • the immobilization solution additionally contained Akt in excess (1000 ng / ml)
  • an even clearer reduction of the referenced fluorescence signals is observed.
  • the measured curves generated in the presence of 100 nM Akt as competitor in solution from the two segments of measuring ranges (for the determination of the endogenous act or for the control measurement with 1000 ng / ml Akt in the immobilization solution) again almost coincide.
  • the remaining residual signal which increases significantly and then only slightly up to a protein concentration of 0.3 mg / ml, corresponds to the signal contribution due to unspecific binding (to the proteins of the sample matrix), which naturally increases with increasing surface concentration of the proteins until the surface of the measurement ranges completely covered.
  • FIG. 12 illustrates the determination of the signal components caused by specific binding at a protein concentration of 0.1 mg / ml from the comparison of the measured values in the presence and absence of the competitor in solution (FIG. 12a) and the determination of the content of endogenous act from the comparison of FIG 12b)
  • the signal components (0.037 RFI) caused by unspecific binding (“NSB") are for the signals from measuring ranges with only endogenous Akt (0.073 RFI) and such with additionally added 1000 ng / ml of purified Akt (about 10 RFI) within the measurement accuracy the same.
  • the content of (5.3 ⁇ 0.5) ng / ml endogenous P-Akt (Ser473) is determined from comparison of the difference between the total signal and unspecific-evoked signal with the calibration curve (FIG. 12b).
  • rat antibody with a total protein concentration of 0.1 mg / ml is added to the solution of the antibody.
  • This solution is then in a sixth sample container with a sixth array turn similar arrangement of the measuring ranges as the aforementioned first and second array filled according to the procedure described in section 4.3.
  • P-Akt Ser473
  • Segment 1 Array series I and II with measurement range contents numbers 1-9 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified Akt in spotting buffer with additional 0.1 mg / ml BSA,
  • Segment 2 Array Rows III and IV with span contents numbers 13 - 21 with applied different concentrations (between 0 ng / ml and 3000 ng / ml) of purified nude in spotting buffer with additional 0.1 mg / ml rat serum. It is believed that the purified act is in completely phosphorylated form, i. Ser473 and Thr308 phosphorylated form.
  • a solution of anti-P-Akt (Thr308) (5 nM) is applied.
  • the further process steps were described above under 4.1.
  • the calibration curves of segment 1 of measuring ranges (generated with solutions containing different concentrations of Akt and the spotting buffer added 0.1 mg / ml BSA), the segment 2 of measuring ranges (generated with solutions containing different concentrations of Akt and the spotting buffer added 0.1 mg / ml rat serum) are shown in Figure 14 (solid symbols).
  • the calibration curves of measurement areas coincide with co-immobilized BSA and co-immobilized rat serum; at concentrations below 100 ng / ml, the calibration curve of co-immobilized rat serum measuring ranges has higher signal values than that with co-immobilized BSA; the signal difference is attributed to the contribution of non-specific binding of the binding reagent to the components of the immobilized rat serum.
  • the measured signal values from both types of measurement ranges are relatively low compared to the fluorescence signals measured when generating the calibration curves for Akt and P-Akt (Ser473).
  • FIG. 15 once again shows the symbols under section 7.3 with filled symbols.
  • La discussed calibration curves generated without the addition of competitors to the binding reagents with the seventh array.
  • the signals obtained by adding the rat serum-containing solution of the antibody as the binding reagent with the ninth array are not measurably different from these calibration curves.
  • a significant dependence on the assumed concentration of P-Akt (Thr308) in the immobilization solution is only found at concentrations above 30 ng / ml. This is consistent with the fact that fluorescence signals measured at lower concentrations are due to non-specific binding.
  • the detection of the content of P-Akt (Thr308) in the rat heart tissue fabricated complex samples of biological origin is made on the segment of measurement areas indicated by the measurement range item numbers 25 to 31.
  • the immobilization solutions generated to generate these ranges are from the same stock solution and were adjusted by dilution (see Section 3.) to different total protein concentrations (between 0.025 mg / ml and 0.5 mg / ml).
  • the segment of measurement ranges with the measurement range contents numbers 37 to 43 was generated by applying immobilization samples from a similar dilution series of the stock solution from the rat heart tissue lysate, but the immobilization samples were each added with purified Akt at a concentration of 1000 ng / ml.
  • the signals to be measured by this segment should serve as controls, whether by comparison of the fluorescence signals to be measured with the calibration curve for P-Akt (Thr308) (generated with measurement ranges with co-immobilized BSA) at the same total protein concentration (0.1 mg / ml) one of the employed high "total Akt" concentration (which is much higher than the expected natural, endogenous Akt content) corresponding high content of P-Akt (Thr308) is recovered.
  • the measurement is carried out by adding a solution of anti-P-Akt (Thr308) (5 nM) in the seventh sample container with the seventh array of measuring ranges therein.
  • the further process steps were described above under 4.1.
  • the results are shown in FIG.
  • the fluorescence signals from measurement areas in which immobilization solutions prepared from rat heart tissue are represented as a function of the total protein concentration (FIG. 16, upper abscissa axis), and the values of the referenced fluorescence signals of the calibration measurement with co-immobilized BSA (protein concentration: 0.1 mg / ml). are shown as a function of the assumed concentrations of P-Akt (Thr308) of the immobilization solutions used for these measurement ranges (FIG. 16, lower abscissa axis).
  • rat antibody with a total protein concentration of 0.1 mg / ml is added to the solution of the antibody.
  • This solution is then filled into a ninth sample container with a ninth array, again of a similar arrangement of the measuring ranges as the aforementioned arrays, according to the procedure described in Section 4.3.
  • P-Akt Thr308

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  • Medicinal Chemistry (AREA)
  • Optics & Photonics (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)

Abstract

La présente invention concerne un procédé de reconnaissance d'une ou plusieurs substances à analyser dans un ou plusieurs échantillons de composition complexe d'origine biologique. La présente invention concerne en outre une micromatrice pour la détermination quantitative d'une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique, qui sont immobilisés dans le domaine de mesure de la micromatrice, ainsi qu'un procédé de reconnaissance quantitatif reposant sur cette micromatrice.
EP05797778A 2005-10-29 2005-10-29 Procédé pour la détermination d une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique et son application Withdrawn EP1941276A1 (fr)

Priority Applications (1)

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EP10171762A EP2269724A1 (fr) 2005-10-29 2005-10-29 Procédé de détermination d'un ou plusieurs analytes dans des échantillons d'origine biologique assemblés de manière complexe et leur utilisation

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PCT/EP2005/011607 WO2007048436A1 (fr) 2005-10-29 2005-10-29 Procédé pour la détermination d’une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique et son application

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EP1941276A1 true EP1941276A1 (fr) 2008-07-09

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EP05797778A Withdrawn EP1941276A1 (fr) 2005-10-29 2005-10-29 Procédé pour la détermination d une ou plusieurs substances à analyser dans des échantillons de composition complexe d'origine biologique et son application
EP10171762A Withdrawn EP2269724A1 (fr) 2005-10-29 2005-10-29 Procédé de détermination d'un ou plusieurs analytes dans des échantillons d'origine biologique assemblés de manière complexe et leur utilisation

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US (2) US7955837B2 (fr)
EP (2) EP1941276A1 (fr)
JP (1) JP5127718B2 (fr)
CN (1) CN101346626A (fr)
AU (2) AU2005337803B2 (fr)
CA (1) CA2627360C (fr)
WO (1) WO2007048436A1 (fr)

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CN101346626A (zh) 2009-01-14
AU2005337803A1 (en) 2007-05-03
WO2007048436A1 (fr) 2007-05-03
CA2627360A1 (fr) 2007-05-03
AU2013207599B2 (en) 2016-03-17
JP5127718B2 (ja) 2013-01-23
US20100292098A1 (en) 2010-11-18
US20090163374A1 (en) 2009-06-25
AU2005337803B2 (en) 2013-04-18
JP2009513958A (ja) 2009-04-02
EP2269724A1 (fr) 2011-01-05
US7955837B2 (en) 2011-06-07
CA2627360C (fr) 2014-06-10

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