CN113811618B - 基于甲基化dna目标区域构建测序文库及系统和应用 - Google Patents

基于甲基化dna目标区域构建测序文库及系统和应用 Download PDF

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CN113811618B
CN113811618B CN201980092935.8A CN201980092935A CN113811618B CN 113811618 B CN113811618 B CN 113811618B CN 201980092935 A CN201980092935 A CN 201980092935A CN 113811618 B CN113811618 B CN 113811618B
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sequence
primer
universal
sequencing
dna sample
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CN113811618A (zh
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杨林
张艳艳
王其伟
卢佳
陈芳
蒋慧
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MGI Tech Co Ltd
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    • C12Q1/6869Methods for sequencing
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1093General methods of preparing gene libraries, not provided for in other subgroups

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CN201980092935.8A 2019-05-21 2019-05-21 基于甲基化dna目标区域构建测序文库及系统和应用 Active CN113811618B (zh)

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Families Citing this family (9)

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Publication number Priority date Publication date Assignee Title
CN114908151B (zh) * 2022-04-29 2026-02-03 上海伯杰医疗科技股份有限公司 用于基因cds区域一代测序的嵌套引物对、测序引物对、测序试剂、测序试剂盒及应用
CN115386966B (zh) * 2022-10-26 2023-03-21 北京寻因生物科技有限公司 Dna表观修饰的建库方法、测序方法及其建库试剂盒
WO2024119481A1 (zh) * 2022-12-09 2024-06-13 深圳华大智造科技股份有限公司 一种快速制备多重pcr测序文库的方法及其应用
WO2024124400A1 (zh) * 2022-12-13 2024-06-20 深圳华大智造科技股份有限公司 一种基于多重pcr的靶向甲基化建库体系、方法及其应用
WO2024259564A1 (zh) * 2023-06-19 2024-12-26 深圳华大智造科技股份有限公司 一种一步法构建靶向文库的方法及其应用
CN117316289B (zh) * 2023-09-06 2024-04-26 复旦大学附属华山医院 一种中枢神经系统肿瘤的甲基化测序分型方法及系统
CN117778578B (zh) * 2023-12-29 2024-10-15 深圳海普洛斯医学检验实验室 一种基于高通量测序检测目标基因甲基化程度的引物组合物及其应用
CN118390167A (zh) * 2024-03-15 2024-07-26 臻赫医药(杭州)有限公司 高通量测序文库的构建方法、试剂盒及应用
CN118389494B (zh) * 2024-06-21 2025-06-20 北京寻因生物科技有限公司 细胞标签微珠及其制备方法和应用

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105861724A (zh) * 2016-06-03 2016-08-17 人和未来生物科技(长沙)有限公司 一种kras基因超低频突变检测试剂盒
CN106011230A (zh) * 2016-05-10 2016-10-12 人和未来生物科技(长沙)有限公司 用于检测碎片化dna目标区域的引物组合物及其应用
CN107937985A (zh) * 2017-10-25 2018-04-20 人和未来生物科技(长沙)有限公司 一种微量碎片化dna甲基化检测文库的构建方法和检测方法

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102796808B (zh) * 2011-05-23 2014-06-18 深圳华大基因科技服务有限公司 甲基化高通量检测方法
US20150011396A1 (en) 2012-07-09 2015-01-08 Benjamin G. Schroeder Methods for creating directional bisulfite-converted nucleic acid libraries for next generation sequencing
ES2922281T3 (es) * 2016-12-07 2022-09-12 Mgi Tech Co Ltd Método para construir una biblioteca de secuenciación de una célula individual y uso del mismo
AU2018243360B2 (en) * 2017-03-29 2023-10-26 Cornell University Devices, processes, and systems for determination of nucleic acid sequence, expression, copy number, or methylation changes using combined nuclease, ligase, polymerase, and sequencing reactions
WO2019006392A1 (en) * 2017-06-30 2019-01-03 Life Technologies Corporation LIBRARY PREPARATION METHODS AND COMPOSITIONS AND USES THEREOF
CN107541791A (zh) * 2017-10-26 2018-01-05 中国科学院北京基因组研究所 血浆游离dna甲基化检测文库的构建方法、试剂盒及应用
CN109666720A (zh) * 2018-12-28 2019-04-23 北京中科遗传与生殖医学研究院有限责任公司 一种对胚胎培养液进行DedscRRBS-PGS分析的方法

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106011230A (zh) * 2016-05-10 2016-10-12 人和未来生物科技(长沙)有限公司 用于检测碎片化dna目标区域的引物组合物及其应用
CN105861724A (zh) * 2016-06-03 2016-08-17 人和未来生物科技(长沙)有限公司 一种kras基因超低频突变检测试剂盒
CN107937985A (zh) * 2017-10-25 2018-04-20 人和未来生物科技(长沙)有限公司 一种微量碎片化dna甲基化检测文库的构建方法和检测方法

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA;Aaron L. Statham 等;Genome Research;第22卷;第1120–1127页 *
Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes;Katherine Elena Varley 等;Genome Research;第18卷;第1844–1850页 *
高通量RNA 甲基化测序数据处理与分析研究进展;刘恋 等;生物化学与生物物理进展;第42卷(第10期);第891~899页 *

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EP3950956A1 (en) 2022-02-09
JP2022525373A (ja) 2022-05-12
JP7203276B2 (ja) 2023-01-12
EP3950956A4 (en) 2022-05-04
CN113811618A (zh) 2021-12-17
US20220056519A1 (en) 2022-02-24

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