CN101184839A - 用于呼吸道病毒感染的RNAi治疗 - Google Patents
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Abstract
此处公开了抑制呼吸道病毒繁殖的双链siRNA分子及其用途,其中所述siRNA分子的每条链约15至约50个核苷酸,并且其中所述siRNA分子的一条链包括与该呼吸道病毒核酸序列中保守位点或其变体相同的核酸序列。
Description
序列表
用于本申请的序列表提交于代替印刷纸件的高密度磁盘,该盘记录于2006年9月1日并标记为CRF“Copyl”、“Copy2”和“Copy3”,每个盘仅含有名为“0525PCT.APP”的1.68 MB文件,其在此以引用的方式整体并入本文。
发明领域
本发明一般涉及治疗和预防病毒感染的领域。本发明还涉及使用RNA干扰(RNAi),尤其是抗病毒siRNA和shRNA的领域。
发明背景
RNA干扰(RNAi)是植物和动物中普遍存在的一种基因调节机制,其中靶mRNA以序列特异性的方式降解(Sharp,P.A.,Genes Dev.15,485-490(2001);Hutvagner,G .& Zamore,P.D.,Cuur.Opin.Genet.Dev.12,225-232(2002);Fire,A.,等,Nature 391,806-811(1998);Zamore,P.,等,Cell101,25-33(2000))。靶mRNA可为宿主mRNA或宿主病原体如病毒病原体的mRNA。
致病性病毒感染是一些世界范围最广泛传播的感染。这种病毒的一个家族是流感家族。在1918年甲型流感病毒大流行期间,估计有2000万至4000万人死亡。在美国,每年有2万至4万人死于甲型流感或其并发症。流行病期间,仅一个冬季流感相关送院的数目就达到超过300,000。对流感病毒感染没有较好的治疗方案,现有的疫苗效价有限,部分是因为抗原性转变和抗原性漂移的特征。大量其它对人类和其它动物致病的病毒的治疗或预防面临类似的困难。
天然RNA降解过程由dsRNA(双链RNA)特异性核酸内切酶Dicer起始,所述内切酶Dicer促进长dsRNA前体持续裂解为21至25核苷酸长的双链片段,该片段称为小干扰RNA(siRNA)(Zamore,P.,等,Cell 101,25-33(2000);Elbashir,S.M.,等,Genes Dev.15,188-200(2001);Hammond,S.M.,等,Nature 404,293-296(2000);Bemstein,E.,等,Nature 409,363-366(2001))。siRNA并入长蛋白质复合体,其识别和裂解靶mRNA(Nykanen,A.,等,Cell 107,309-321(2001))。有研究组报道,dsRNA引入哺乳动物细胞不导致有效的Dicer-介导的siRNA产生,并因此不诱导RNAi(Caplen,N.J.,等,Gene 252,95-105(2000);Ui-Tei,K.,等,FEBS Lett.479,79-82(2000))。siRNA在细胞中成熟中对Dicer的需求可通过引入合成寡核苷酸siRNA双链体(如21核苷酸序列)而迂回,该双链体在多种哺乳动物细胞中抑制转染基因和内源基因的表达(Elbashir,等,Nature411:494-498(2001))。
发明内容
在阅读了本发明以下更完全的描述之后,本领域技术人员对本发明的这些和其它目标、优点和特征将更加显而易见。当提供数值的一个范围时,应理解还特定地公布了该范围上限值和下限值之间每个内插值,除非上下文另有清楚指明,所述内插值以下限值的十分之一为单位增量。在指明范围中的任何指明值或内插值与该指明范围中的任何其它指明值或内插值之间的每个较小范围也都包括在本发明中。根据指明范围中任何具体排除的界限,这些较小范围的上限值和下限值可独立地包括在该范围内或排除于该范围外,且两个限值中任一个或两个都包括在所述较小范围内或两个都没有包括在所述较小范围内时每个范围也都包括在本发明中。当所指明范围包括两个限值的一个或两个时,排除了所包括的限值的任何一个或两个的那些范围也包括在本发明中。
本发明的一方面是一种诱导RNAi的实体,其靶向于呼吸道病毒的转录子,其中所述诱导RNAi的实体长度在约15和约60个核苷酸之间,并包括:至少84%相同于编码病毒蛋白的核酸的一部分的第一核酸序列;和至少84%互补于所述第一核酸部分的第二核酸序列。
在本发明的一个实施方案中,所述诱导RNAi的实体长度在约15和约40个核苷酸之间,并包括:至少89%相同于编码病毒蛋白的核酸的一部分的第一核酸序列;和至少89%互补于所述第一核酸部分的第二核酸序列。在本发明另一实施方案中,所述诱导RNAi的实体长度在约15和约40个核苷酸之间,并包括:至少94%相同于编码病毒蛋白的核酸的一部分的第一核酸序列;和至少94%互补于所述第一核酸部分的第二核酸序列。在另一实施方案中,所述诱导RNAi的实体是siRNA或shRNA。在本发明另一实施方案中,该核酸包括3’突出端。在相关实施方案中,3,突出端包括脱氧胸苷。在本发明另一实施方案中,病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。在本发明另一实施方案中,病毒蛋白是呼吸道病毒蛋白。在本发明另一实施方案中,病毒蛋白是流感病毒蛋白。在本发明另一实施方案中,诱导RNAi的实体是shRNA,进一步包括形成发夹环结构的第三核酸序列。在相关实施方案中,发夹环结构包括4至11个核苷酸。
本发明的另一方面是分离的核酸序列,长约16至约35个核苷酸,沿其长度至少约85%相同于编码病毒蛋白的病毒核酸的一部分或其互补物。在本发明一个实施方案中,病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。在本发明另一实施方案中,病毒蛋白是呼吸道病毒蛋白。在本发明另一实施方案中,病毒蛋白是流感病毒蛋白。
本发明的另一方面是诱导RNAi的实体,其靶向流感病毒蛋白的转录子,其中所述诱导RNAi的实体长度在约15和约60个核苷酸之间,并包括:
第一核酸序列,其包括选自以下一组的核酸序列:SEQ ID NO 1-10709、其互补物、或其长度有至少16个核苷酸或核苷酸序列至少80%同源于所述核酸序列的片段;和
第二核酸序列,其至少80%互补于所述第一核酸序列。
在本发明另一实施方案中,所述第二核酸序列至少约90%互补于所述第一核酸部分。在另一实施方案中,所述诱导RNAi的实体是siRNA或shRNA。在本发明另一实施方案中,诱导RNAi的实体是shRNA,进一步包括形成发夹环结构的第三核酸序列。在相关实施方案中,发夹环结构包括4至11个核苷酸。
本发明的另一方面是靶向病毒蛋白转录子保守位点的siRNA,其中所述诱导RNAi的实体长度约15至约60个核苷酸。在本发明另一实施方案中,保守位点长度约300个核苷酸,并包括所述病毒蛋白基因的3’末端。在本发明另一实施方案中,病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。在本发明另一实施方案中,病毒蛋白是呼吸道病毒蛋白。在本发明另一实施方案中,病毒蛋白是流感病毒蛋白。
本发明的另一方面是siRNA,其减少编码第一病毒蛋白的第一基因和编码第二病毒蛋白的第二基因的表达。在本发明一个实施方案中,第一病毒基因和第二病毒基因来自同一病毒的不同毒株。在本发明另一实施方案中,第一病毒基因和第二病毒基因来自两种不同病毒。在相关实施方案中,一种病毒是流感病毒。
本发明的另一方面是减少编码病毒蛋白的两个或多个基因的表达至少约25%的siRNA。
本发明的另一方面是RNAi诱导剂,其靶向转录子,该转录子的序列包括编码病毒蛋白的核酸的靶部分。在本发明一实施方案中,该RNAi诱导剂是siRNA或shRNA。在本发明另一实施方案中,病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。在本发明另一实施方案中,病毒蛋白是呼吸道病毒蛋白。在本发明另一实施方案中,病毒蛋白是流感病毒蛋白。
本发明另一方面是包括第一siRNA和第二siRNA的组合物,第一siRNA和第二siRNA各自减少编码病毒蛋白的基因表达。在本发明一实施方案中,第一siRNA减少编码第一病毒蛋白的第一基因的表达,第二siRNA减少编码第二病毒蛋白的第二基因的表达。在本发明的相关实施方案中,第一siRNA和第二siRNA减少所述第一基因和第二基因表达的至少约25%。在本发明另一实施方案中,第一基因和第二基因来自同一病毒种的两种毒株。在本发明另一相关实施方案中,第一基因和第二基因来自同一病毒属的两个物种。在本发明另一相关实施方案中,第一基因和第二基因来自同一病毒科的两种病毒。在本发明另一实施方案中,该组合物进一步包括减少编码第三病毒蛋白的第三基因表达至少约25%的第三siRNA。在相关实施方案中,该组合物还包括阳离子聚合物。
本发明的另一方面是诊断试剂盒,其包括针对至少部分的病毒蛋白基因检测所述基因的引物或探针,其中所述部分是保守位点。
本发明的另一方面是减少靶病毒基因在病毒感染哺乳动物细胞中表达的方法,包括以下步骤:将所述细胞与减少病毒蛋白基因表达的siRNA接触,以使所述siRNA进入所述哺乳动物细胞的细胞质并减少所述病毒蛋白基因至少约25%的表达。在本发明一实施方案中,病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。在本发明另一实施方案中,病毒蛋白基因是呼吸道病毒蛋白基因。在本发明另一实施方案中,病毒蛋白基因是流感病毒蛋白基因。
本发明另一方面是递送siRNA至需要其的患者的方法,包括将包括有效量的siRNA的组合物给药于所述患者,其中所述siRNA减少病毒蛋白基因至少约25%的表达。在本发明一实施方案中,siRNA以患者体重的约0.1mg/kg至约20mg/kg的浓度递送给患者。在本发明另一实施方案中,siRNA以患者体重的约0.1mg/kg至约10mg/kg的浓度递送给患者。在本发明另一实施方案中,siRNA以患者体重的约0.1mg/kg至约50mg/kg的浓度递送给患者。在本发明另一实施方案中,siRNA减少病毒蛋白基因至少约25%的表达。在本发明另一实施方案中,siRNA包括表1-9所列的核酸序列。在本发明另一实施方案中,该组合物还包括阳离子聚合物。在本发明另一实施方案中,该组合物以吸入、鼻内、口服或静脉内给药。
本发明的另一方面是防止或治疗患者病毒感染的方法,包括将包含靶向病毒蛋白基因的siRNA或shRNA的治疗化合物给药于患者。在本发明一实施方案中,所述siRNA或shRNA长度在约15和约60个核苷酸之间,并包括:至少约85%相同于编码病毒蛋白的核酸的一部分的第一核酸序列;和至少85%互补于所述第一核酸部分的第二核酸序列。在本发明另一实施方案中,siRNA是双链siRNA分子,其中所述siRNA分子的各链是约1 5至约50个核苷酸,其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。在本发明另一实施方案中,呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。在本发明另一实施方案中,核酸序列编码核蛋白基因。在本发明另一实施方案中,呼吸道病毒是流感病毒,其中siRNA不是选自SEQ ID NO.10710-10751。在本发明另一实施方案中,治疗化合物包括阳离子聚合物。
本发明的另一方面是siRNA用于制备抑制哺乳动物患者呼吸系统病毒繁殖的药剂的用途,包括向患者施用含有靶向于病毒蛋白质基因的siRNA或shRNA的治疗化合物。在本发明一个实施方案中,siRNA或shRNA长度在约15和约60个核苷酸之间,并包括:至少约85%相同于编码病毒蛋白的核酸的一部分的第一核酸序列;和至少85%互补于所述第一核酸部分的第二核酸序列。在本发明另一实施方案中,siRNA是双链siRNA分子,其中所述siRNA分子的各链是约15至约50个核苷酸,其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。在本发明另一实施方案中,呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。在本发明另一实施方案中,核酸序列编码蛋白(NP)基因。在本发明另一实施方案中,呼吸道病毒是流感病毒,其中siRNA不是选自SEQ IDNO.10710-10751。在本发明另一实施方案中,呼吸道病毒是流感病毒,其中siRNA选自SEQ ID NO.1-10709。
本发明的另一方面是鉴别存在于两种或多种病毒的病毒蛋白转录子中的siRNA或shRNA靶序列的方法,包括以下步骤:a)提供编码来自病毒的病毒蛋白的核酸序列;b)鉴别所述核酸序列的靶部分,其中所述部分包括约19个核苷酸且不包括多于3个连续鸟嘌呤核苷酸或多于3个连续胞嘧啶核苷酸;和c)重复步骤a和b一次或多次,每次重复使用不同病毒,从而鉴别病毒蛋白转录子中的siRNA或shRNA靶序列。在本发明一个实施方案中,所述核酸序列包括蛋白序列的保守位点。在本发明另一实施方案中,该方法进一步包括产生结合于所述靶序列的siRNA或shRNA。
本发明的另一方面是一种诊断病毒感染的方法,包括确定患者是否感染了对诱导RNAi的实体抑制敏感的病毒。在本发明一实施方案中,该方法进一步包括将诱导RNAi的实体给药于患者的步骤。
本发明的另一方面是治疗或防止流感病毒感染的方法,包括将诱导RNAi的实体给药于需要的患者。
本发明的另一方面是抑制呼吸道病毒繁殖的双链siRNA分子,其中所述siRNA分子的各链是约15至约50个核苷酸,其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。在本发明另一实施方案中,呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。在相关方案中,核酸序列编码蛋白(NP)基因。在本发明另一实施方案中,呼吸道病毒是流感病毒,其中siRNA不是选自SEQ ID NO.10710-10751。在本发明另一实施方案中,呼吸道病毒是流感病毒,其中siRNA选自SEQ ID NO.1-10709。
附图说明
图1.A-K展示了本发明靶病毒的系列核酸序列比对。图1A分别以表观顺序公开了SEQ ID NO 11,246-11,430。图1B分别以表观顺序公开了SEQID NO 11,431-11,434。图1C分别以表观顺序公开了SEQ ID NO11,435-11,440。图1D分别以表观顺序公开了SEQ ID NO 11,441-11,443。图1E分别以表观顺序公开了SEQ ID NO 11,444-11,446。图1F分别以表观顺序公开了SEQ ID NO 11,447-11,450。图1G分别以表观顺序公开了SEQID NO 11,451-11,454。图1H分别以表观顺序公开了SEQ ID NO11,455-11,458。图1I分别以表观顺序公开了SEQ ID NO 11,459-11,461。图1J分别以表观顺序公开了SEQ ID NO 11,462-11,465。图1K分别以表观顺序公开了SEQ ID NO 11,466-11,470。
图2.通过给药流感特异性siRNA抑制小鼠中流感病毒繁殖。对小鼠静脉注射增加量的与jetPEI复合的NP-1496 siRNA或GFP siRNA。3小时后,用甲型流感的PR8变种感染小鼠。感染后24小时使用MDCK-HA检测中的肺匀浆测量病毒滴度。每个数据点代表1只小鼠。各组间的P值表示统计显著性。
图3.治疗性给药siRNA抑制小鼠流感病毒产生。流感感染后5小时,对小鼠注射混有jetPEI的NP-siRNA或PA siRNA。感染后28小时使用MDCK-HA检测中的肺匀浆测量病毒滴度。每个数据点代表1只小鼠。各组间的P值表示统计显著性。
图4.流感特异性siRNA处理提供了宽泛的抗高度致病性H5和H7甲型禽流感病毒的致死攻击的交叉保护。在病毒攻击之前1天,对BALB/c小鼠(每组8个)静脉给与50μgsiRNA,在病毒攻击的当天静脉给与20μgsiRNA。10 LD50剂量的鼻内病毒攻击后,对小鼠的体重和存活率监测16天。填充圆圈,GFP-特异性siRNA;空白圆圈,NP+PA-特异性siRNA。指出了P值。
图5.以指定量的NP特异性siRNA的PBS溶液或PBS对照鼻内处理BALB/c小鼠。2小时后,以PR8血清型鼻内感染所有小鼠(1000 pfu/小鼠)。感染后24小时收集肺,以MDCK-HA检测从肺匀浆测量病毒滴度。PBS和siRNA组之间的P值表示0.5、1和2 mg/kg siRNA处理组的统计显著性。
图6.对BALB/c小鼠鼻内给药对照和NP-靶向siRNA(10 mg/kg,PBS中)。3小时后对所有小鼠鼻内(i.n.)感染PR8病毒(50 pfu/小鼠)。感染后24小时和48小时收集肺,从左肺分离总RNA。使用dT18引物将总RNA反转录为cDNA。使用PB1特异性引物进行实时PCR以定量病毒mRNA水平。GAPDH用作中间对照。将右肺和左肺均质化,以MDCK-HA检测测量病毒滴度。感染48小时后的样品中的病毒滴度示于图中(使用student检验发现PBS和NP siRNA处理组之间存在统计显著性(p=0.01));感染24小时后的样品中的滴度太低而检测不到,可能是因为siRNA引导的抑制。
图7.以10 mg/kg的亲环蛋白B特异性siRNA或GFP siRNA的PBS溶液或PBS对照鼻内处理BALB/c小鼠。每组有5只小鼠。24小时后收集小鼠的肺。从肺样品纯化总RNA,使用dT18引物进行反转录。实时PCR中使用亲环蛋白B特异性引物以定量靶mRNA水平。GAPDH特异性引物也在PCR反应中用作对照。
图8.显示了蜗状siRNA制品鼻内给药体内抑制流感病毒。
图9.显示了蜗状siRNA制品静脉内给药体内抑制流感病毒。
图10A.用于流感病毒抑制的以蜗状制品递送的siRNA静脉内给药的剂量-反应图。
图10B.显示了蜗状siRNA制品口服强饲给药体内抑制流感病毒。
图11A-C.实验的结果显示siRNA抑制MDCK细胞中流感病毒繁殖。通过电穿孔法将靶向不同病毒转录子的6种不同siRNA引入MDCK细胞,8小时后以病毒感染细胞。图11A是显示在感染后各时间血凝素检测培养物上清液中病毒滴度的时间过程,该感染是以病毒毒株A/PR/8/34(H1N1)(PR8),存在或不存在各siRNA或对照siRNA情况下以0.01的感染复数(MOI)。图11B是显示在感染后各时间血凝素检测培养物上清液中病毒滴度的时间过程,该感染是以流感病毒毒株A/WSN/33(H1N1)(WSN),存在或不存在各siRNA或对照siRNA情况下以0.01的MOI。图11C是病毒感染细胞中培养物上清液中病毒滴度的噬菌斑测定,该细胞模拟转染或以siRNA NP-1496转染。图11D显示在不同剂量siRNA抑制流感病毒繁殖。以指示量的NP-1496 siRNA转染MDCK细胞,然后以PR8病毒以0.01的MOI感染。感染后48小时测量病毒滴度。显示了两次实验中的一次的代表性数据。
图12.显示了与抑制流感病毒效力有关的各siRNA相对于流感病毒基因片段的位置。
图13A.显示了培育鸡胚的示意图,指出了注射siRNA和siRNA/递送剂组合物的区域。
图13B.显示了各siRNA在培育鸡胚中抑制流感病毒繁殖的能力。
图14.显示了核蛋白与病毒RNA分子相互作用的示意图。
图15.显示了流感病毒vRNA、mRNA和cRNA(模板RNA)之间的差异和相互关系的示意图。
图16.显示了在感染前6-8小时经模拟转染或以siRNA NP 1496转染的细胞中,在病毒感染后各时间病毒NP和NS RNA的量。公布的序列为SEQ ID NO:11,492。
图17A和17B.图17A显示抑制流感病毒繁殖需要双链体siRNA中的野生型(wt)反义链。MDCK细胞首先以wt和修饰的(m)链形成的siRNA转染,8小时后以PR8病毒以0.1的MOI感染。感染24小时后检测培养物上清液中的病毒滴度。显示了两个实验之一的代表数据。图17B显示M-特异性siRNA抑制特异性mRNA的蓄积。M-37转染MDCK细胞,以PR8病毒以0.01的MOI感染,感染1、2和3小时后收集以分离RNA。使用RNA-特异性引物反转录,之后实时PCR来测量M-特异性mRNA、cRNA、和vRNA的水平。各种病毒RNA的水平标准化到同一样品中γ-肌动蛋白mRNA(底板)的水平。各RNA的相对水平显示为平均值+-.S.D。显示了两个实验之一的代表数据。
图18A-D.显示NP-特异性的siRNA不仅抑制Np-特异性mRNA、vRNA、和cRNA的蓄积,还抑制M-特异性和NS-特异性mRNA、vRNA、和cRNA的蓄积。以NP-1496转染MDCK(A-C)和Vero(D)细胞,以PR8病毒以0.1的MOI感染,感染1、2和3小时后收集MDCK(A-C)和Vero(D)细胞以分离RNA。使用RNA-特异性引物反转录,之后实时PCR来测量NP-特异性、M-特异性和NS-特异性mRNA、cRNA、和vRNA的水平。各种病毒RNA的水平标准化到同一样品中γ-肌动蛋白mRNA(未显示)的水平。显示各RNA的相对水平。显示了两个实验之一的代表数据。
图18E-G.各图的右侧显示PA-特异性siRNA不仅抑制PA-特异性mRNA、vRNA、和cRNA的蓄积,还抑制M-特异性和NS-特异性mRNA、vRNA、和cRNA的蓄积。以PA-1496转染MDCK细胞,以PR8病毒以0.1的MOI感染,感染1、2和3小时后收集MDCK细胞以分离RNA。使用RNA-特异性引物反转录,之后实时PCR来测量PA-特异性、M-特异性和NS-特异性mRNA、cRNA、和vRNA的水平。各种病毒RNA的水平标准化到同一样品中γ-肌动蛋白mRNA(未显示)的水平。显示各RNA的相对水平。
图18H.图18H显示NP-特异性siRNA抑制PB1-特异性mRNA(上板)、PB2-特异性mRNA(中板)和PA-特异性mRNA(下板)的蓄积。以NP-1496转染MDCK细胞,以PR8病毒以0.1的MOI感染,感染1、2和3小时后收集MDCK细胞以分离RNA。使用RNA-特异性引物反转录,之后实时PCR来测量PB1-特异性、PB2-特异性和PA-特异性mRNA的水平。各种病毒RNA的水平标准化到同一样品中γ-肌动蛋白mRNA(未显示)的水平。显示各RNA的相对水平。
图19A-C.图19A是显示流感病毒感染前与阳离子聚合物PEI一起给药siRNA抑制小鼠流感病毒繁殖的图。填充方块(未处理);空白方块(GFPsiRNA);空白圆圈(30.mu.g NP siRNA);填充圆圈(60.mu.g NP siRNA)。每个符号代表1只动物。显示了各组之间的p值。图19B是显示流感病毒感染前与阳离子聚合物PLL一起给药siRNA抑制小鼠流感病毒繁殖的图。填充方块(未处理);空白方块(GFP siRNA);填充圆圈(60.mu.g NPsiRNA)。每个符号代表1只动物。显示了各组之间的p值。图19C是显示流感病毒感染前与阳离子聚合物jetPEI一起给药siRNA抑制小鼠流感病毒繁殖比以PBS给药显著有效的图。空白方块(未处理);空白三角(PBS中的GFP siRNA);填充三角(PBS中的NP siRNA);空白圆圈(伴有jetPEI的GFP siRNA);填充圆圈(伴有jetPEI的NP siRNA)。每个符号代表1只动物。显示了各组之间的p值。
图20.显示流感病毒感染前同时给药靶向流感病毒NP和PA转录子的siRNA显示出累积效应的图。填充方块(未处理);空白圆圈(60.mu.g NPsiRNA);空白三角(60.mu.g PA siRNA);填充圆圈(60.mu.g NP siRNA+60.mu.g PA siRNA)。每个符号代表1只动物。显示了各组之间的p值。
图21.显示流感病毒感染后给药siRNA抑制小鼠流感病毒繁殖的图。填充方块(未处理);空白方块(60.mu.g GFP siRNA);空白三角(60.mu.gPA siRNA);空白圆圈(60.mu.g NP siRNA);填充圆圈(60.mu.g NPsiRNA+60.mu.g PA siRNA)。每个符号代表1只动物。显示了各组之间的p值。
图22A-C.图22A是表达shRNA的慢病毒载体的结构图。shRNA的转录由U6启动子驱动。EGFP表达由CMV启动子驱动。SIN-LTR、.PSI.、cPPT和WRE是慢病毒元件。显示了NP-1496 shRNA的序列。图22B表示流式细胞术结果,证实图22B所示慢病毒感染的Vero细胞以剂量依赖的方式表达EGFP。通过将编码NP-1496a shRNA的DNA载体与封装载体共转染入293T细胞而繁殖慢病毒。培养物上清液(0.25ml或1.0m1)用于感染Vero细胞。所得到的Vero细胞系(Vero-NP-0.25和Vero-NP-1.0)和对照(未感染的)Vero细胞由流式细胞术分析GFP表达。显示了Vero-NP-0.25(图的上部)和Vero-NP-1.0(图的下部)细胞的平均荧光强度。阴影曲线代表对照(未感染的)Vero细胞的平均荧光强度。图22C显示在表达NP-1496 shRNA的Vero细胞中流感病毒繁殖的抑制。亲本Vero细胞和表达NP-1496 shRNA的Vero以PR8病毒以0.04、0.2和1的MOI感染。上清液中的病毒滴度通过感染后48小时血凝素(HA)检测而确定。
图23.显示表达靶向于流感病毒转录子的siRNA的DNA载体的给药抑制小鼠流感病毒繁殖。编码RSV、NP-1496(NP)或PB1-2257(PB1)shRNA的60.mu.g DNA与40.mu.1 Infasurf混合并通过滴注给药于小鼠。对无处理(NT)组小鼠滴注60.mu.15%葡萄糖。13小时后,以PR8病毒每小鼠12000pfu鼻内感染小鼠。感染后24小时以MDCK/血凝素检测测量肺中的病毒滴度。每个数据点代表1只小鼠。显示了各组之间的p值。
发明详述
本发明是基于胞内RNA干扰(RNAi)的现象。细胞内含有互补于靶RNA的部分的双链RNA的存在以序列特异性的方式抑制了靶RNA的表达。通常,抑制是由于裂解靶或抑制其翻译而造成的。RNAi是对诸如病原体感染等刺激的正常细胞反应,也是使受到这样的感染所扰乱的系统恢复平衡的有效机制。而且,RNAi可用于特异性地破坏胞内信号传导途径。
驱动RNAi活性的双链RNA结构是siRNA、shRNA和其它能被处理以严生siRNA或shRNA的双链结构(dsRNA)(或能通过RNA干扰抑制靶转录子表达的任何其它小RNA种类)。诱导RNAi的实体如siRNA和shRNA可引入患者或其离体细胞,并调节特异性信号转导途径。而且,这些dsRNA对于特征为异常细胞信号转导的疾病或疾患是有效的防止和治疗药物。例如,感染哺乳动物的病毒通过控制宿主细胞的细胞机器而复制。因此使用RNAi技术来破坏控制病毒繁殖的病毒信号转导途径是有效的。
已知某些病毒基因控制病毒生命周期两个阶段中的关键。本领域现有的工作集中于病毒聚合酶是siRNA的有效靶,因为它们对病毒复制是需要的。例如,RNA依赖性RNA聚合酶(RdRP)在转录和复制中都是必要的多肽。这导致如下推测:RdRP亚基的沉默将导致几乎所有RNA合成的丧失,并因此导致病毒繁殖的显著抑制。事实上,该结果已经在RSV、水泡性口炎和副流感病毒中观察到。(见,Barik S.Control of nonsegmentednegative-strand RNA virus replication by siRNA(siRNA对非片段的负链RNA病毒复制的控制).Virus Res.2004 Jun 1;102(1):27-35;和Bitko等,Phenotypic silencing of cytoplasmic genes using sequence-specificdouble-stranded short interfering RNA and its application in the reversegenetics of wild type negative-strand RNA viruses(使用序列特异性双链短干扰RNA的细胞质基因表型沉默及其在野生型负链RNA病毒的反求遗传学中的应用).BMC Microbio1.2001;1(1):34.Epub 2001 Dec 20.)。发现另一种病毒蛋白(不同地称为核蛋白、衣壳或核衣壳)参与例如病毒转录和复制。然而,对核蛋白进行的反义研究没有指出编码此多肽的转录子是象聚合酶那么合适的靶。(见,Hatta等.Inhibition of influenza virus RNA polymerase and nucleoprotein genes expression by unmodified,phosphorothioated,and liposomally encapsulated oligonucleotides(未修饰的磷硫酰化的脂质体包被的寡核苷酸对流感病毒RNA聚合物及核蛋白基因表达的抑制).Biochem Biophys Res Commun.1996 Jun 14;223(2):341-6;和Mizuta等.Antisense oligonucleotides directed against the viral RNApolymerase gene enhance survival of mice infected with influenza A(定向抗病毒RNA聚合酶基因的反义寡核苷酸提高了感染甲型流感病毒的小鼠的存活).Nat Biotechnol.1999 Jun;17(6):583-7.)。近来siRNA的研究已表示考察核蛋白作为siRNA可能的靶。Gitlin等.Short interfering RNA confersintracellular antiviral immunity in human cells(短干扰RNA赋予人类细胞中的细胞内抗病毒免疫).Nature.2002 Jul 25;418(6896):430-4;Fowler等.Inhibition of Marburg virus protein expression and viral release by RNAinterference(RNA干扰对马尔堡病毒蛋白表达和病毒释放的抑制).J GenVirol.2005 Apr;86(Pt 4):118 1-8;和Yuan等.Inhibition of coxsackievirus B3replication by small interfering RNAs requires perfect sequence match in thecentral region of the viral positive strand(小干扰RNA对科萨奇病毒B3复制的抑制需要病毒正链中心区域中的完美序列匹配).J Virol.2005 Feb;79(4):2151-9。本发明证明使用针对病毒核蛋白序列的siRNA来破坏病毒信号转导途径并抑制病毒复制。进一步地,本发明的发明人确定另一种病毒蛋白、核蛋白或核衣壳蛋白的抑制或沉默与抑制聚合酶活性有类似的效应。因此,核蛋白转录子是对siRNA的优选靶。
不希望受任何理论束缚,NP siRNA的宽效应可能是NP结合并稳定vRNA和cRNA的重要性的结果,而不是NP-特异性siRNA非特异性靶向RNA降解。例如,流感病毒中的NP基因片段编码单链RNA结合核蛋白,单链RNA结合核蛋白可结合vRNA和cRNA。在病毒生命周期中,首先转录和翻译NP mRNA。NP蛋白的主要功能是衣壳化病毒基因组用于RNA转录、复制和封装。没有NP蛋白时,vRNA和cRNA的全长合成都严重受损。当NP siRNA诱导NP RNA降解时,NP蛋白合成受损,导致缺少有效NP蛋白,随后影响其它病毒基因片段的复制。以这种方式,NP siRNA能在较早期有效抑制病毒繁殖。因此,病毒核蛋白的多功能特征使其成为基于RNAi治疗的有效靶,提供了由抑制单个基因而在病毒生命周期多个不同阶段干涉的机会。
已经假设受感染宿主细胞中NP蛋白分子的数目调节mRNA合成,相对于基因组RNA(vRNA和cRNA)的复制。使用NP蛋白中温度敏感的突变,此前的研究已经显示cRNA而不是mRNA的合成在体外和体内是温度敏感的。已经显示NP蛋白对于新生cRNA和vRNA转录子的延伸和抗终止是需要的。此处列出的结果证明病毒NP-特异性siRNA抑制受感染细胞中所有病毒RNA的蓄积。尽管不希望受束缚于任何理论,但很可能在NP-特异性siRNA存在下,新转录的NP mRNA被降解,导致在病毒感染后抑制NP蛋白合成。没有新合成的NP,从而抑制进一步的病毒转录和复制以及新病毒粒子的产生。
参考附图,本发明的特征和其它细节将更具体地描述,并在权利要求中指出。应该理解的是,此处所述的特定实施方案是以示例的方式而不是本发明的限制。本发明的主要特征可以各种实施方案采用而不偏离本发明范围。除非另外具体说明,所有部分和百分比都是以重量计。
定义
为了方便,用于说明书、实施例和附带权利要求的一些术语集中于此。除非另外定义,此处所用的所有技术和科学术语具有如本发明所属领域普通技术人员通常理解的含义。然而,对于这些定义在本领域内有不同含义的情况,以下定义用于控制。
“核苷酸”包括含氮碱基、糖分子、和磷酸基。“核苷”包括连接于糖分子的含氮碱基(核碱基(nucleobase))。在天然产生的核酸中,磷酸基共价连接相邻的核苷以形成聚合物。核酸可包括天然形成的核苷(如腺苷、胸苷、鸟苷、胞苷、尿苷、脱氧腺苷、脱氧胸苷、脱氧鸟苷、和脱氧胞苷)、核苷类似物(如2-氨基腺苷、2-硫代胸苷、肌苷、吡咯并嘧啶、3-甲基腺苷、C5-丙炔基胞苷、C5-丙炔基尿苷、C5-溴尿苷、C5-氟尿苷、C5-碘尿苷、C5-甲基胞苷、7-去氮腺苷、7-去氮鸟苷、8-氧代腺苷、8-氧代鸟苷、O(6)-甲基鸟嘌呤、和2-硫代胞苷)、化学改性的碱基、生物修饰的碱基(如甲基化碱基)、嵌入碱基、改性的糖(如2’-氟核糖、核糖、2’-脱氧核糖、阿拉伯糖、和己糖)。
术语“RNA”或“RNA分子”或“核糖核酸分子”指核糖核苷酸的聚合物。术语“DNA”或“DNA分子”或“脱氧核糖核酸分子”指脱氧核糖核苷酸的聚合物。DNA和RNA可为天然合成的(如分别通过DNA复制或DNA或RNA的转录)。RNA可为转录后修饰的。DNA和RNA还可为化学合成的。术语“靶mRNA”和“靶转录子”此处同义地使用。
术语“RNA干扰(interference)”(“RNAi”)指RNA的选择性胞内降解(也指基因沉默)。RNAi还包括微RNA或作用象微RNA的siRNA的翻译抑制。RNAi可以通过引入小干扰RNA(siRNA)或胞内产生siRNA(如从质粒或转基因)而起始,以沉默一个或多个目标基因的表达。或者,RNAi在细胞中天然发生以除去外来RNA(如病毒RNA)。天然RNAi通过Dicer引导的前体dsRNA断裂而继续进行,这将降解机制引导至其它关联的RNA序列。
术语“小干扰RNA”(“siRNA”),本领域中也指“短干扰RNA”,指包括约10-60个核苷酸(或核苷酸类似物),能够指引或介导RNA干扰的RNA(或RNA类似物)。术语“siRNA”包括双链siRNA和单链siRNA。一般此处所用的术语“siRNA”指双链siRNA(与单链或反义RNA相比)。术语“短发夹RNA”(“shRNA”)是指折叠成发夹结构并含有至少一个核苷酸的单链部分(“环”)的siRNA(或siRNA类似物)前体,如,含有至少两个互补部分和至少一个单链部分的RNA分子,该至少两个互补部分杂交或能够杂交以形成足够长以介导RNAi(如所述用于siRNA双链体的)的双链(双链体)结构,该至少一个单链部分通常长约1至10个核苷酸以形成连接shRNA区域的环从而形成双链体部分。该双链体部分可能,但通常不会,在一条链或两条链含有一个或多个错配和/或一个或多个由一个或多个未配对的核苷酸组成的凸起。不希望被理论束缚,认为shRNA由保守胞内RNAi机制加工为siRNA。shRNA能抑制与shRNA一部分(指shRNA反义链或引导链)互补的靶转录子的表达。通常,shRNA引导链与靶转录子之间形成的双链体的特征类似于siRNA与靶转录子之间形成的双链体。在本发明的一些实施方案中,shRNA的5’末端具有磷酸基而另一些实施方案中不具有。在本发明的一些实施方案中,shRNA的3’末端具有羟基。
术语“诱导RNAi的实体”或“RNAi剂”指一种RNA(不同于非人工修饰或人工传送至其位置的天然产生的分子),其在细胞中的存在导致RNAi并导致RNAi剂所靶向的RNA表达减少。RNAi剂可为siRNA或shRNA。在本发明一些实施方案中,siRNA可含有通过内源小RNA(指微RNA)采用的翻译阻遏途径抑制靶RNA表达的链。在本发明一些实施方案中,shRNA可胞内加工以产生一种经由此微RNA翻译阻遏途径抑制靶RNA表达的siRNA。任何“靶RNA”可指“靶转录子”,而不考虑靶RNA是否为信使RNA。术语“靶RNA”与“靶转录子”在此互换地使用。RNAi诱导剂包括RNAi剂和载体(不同于上述未经人工修饰的天然产生的分子),其在细胞中的存在导致RNAi并导致RNAi剂所靶向的RNA表达减少。
“RNAi诱导载体”包括一种载体,其在细胞中的存在导致一种或多种RNA转录,所述RNA自身杂交或互相杂交以形成RNAi剂。在本发明各实施方案中,该术语包括质粒,如DNA载体(其序列可包括衍生自病毒的序列元件),或病毒(不同于非经由人工修饰的天然产生的病毒或质粒),其在细胞中的存在导致一种或多种RNA转录,所述RNA自身杂交或互相杂交以形成RNAi剂。通常,载体包括可操作连接于表达信号的核酸,从而当载体存在于细胞中时,杂交或自身杂交以形成RNAi剂的一种或多种RNA分子被转录。因此载体提供了用于胞内合成RNAi剂的模板。为了诱导RNAi,病毒基因组存在于细胞(如在病毒衣壳与细胞膜融合之后)认为足以构成病毒存在于细胞内。此外,为了诱导RNAi,如果载体被引入细胞、进入细胞、或继承自母体细胞,都认为载体存在于细胞,而不考虑它随后在细胞中是否被修饰或加工。如果载体在细胞中的存在导致一种或多种RNA产生,所述RNA互相杂交或自身杂交以形成靶向于转录子的RNAi剂,即,如果载体在细胞中的存在导致一种或多种靶向于转录子的RNAi产生,则RNAi诱导载体被认为是靶向于转录子。术语“诱导”的使用不是指RNAi剂必须活化或上调RNAi,仅仅指载体在细胞中的存在导致RNAi剂在细胞中产生,导致RNAi介导的该剂所靶向的RNA表达减少。
RNAi诱导实体被认为是靶向靶转录子,目的如此处所述,如果(1)该剂包含一条链,其在长15-29个核苷酸的评价窗口大致互补于靶转录子,如15,更优选至少约17,更优选在长至少约18或19至约21-23或24-29个核苷酸的评价窗口。例如在本发明各实施方案中该剂包括一条链,其在长15-29个核苷酸的评价窗口具有互补于靶转录子的至少约70%,优选至少约80%、84%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、或100%精确序列,如15,更优选至少约17,更优选在长至少约18或19至约21-23或24-29个核苷酸的评价窗口;或(2)RNAi剂的一条链在严格条件下杂交于靶转录子,用于在体外和/或哺乳动物细胞质或细胞核中常见条件下杂交小(<50核苷酸)RNA分子。此外,在剂通过微RNA翻译阻遏途径起作用的情况,该剂和靶形成的双链体含有至少一个凸起和/或错配。在本发明一些实施方案中,引导链和靶转录子形成的双链体中的GU或UG碱基对不认为是错配,为了确定RNAi剂是否靶向于转录子。
在细胞中的存在导致产生靶向于转录子的RNAi剂的RNA诱导载体也认为是靶向于转录子。因为靶向转录子的效应是减少或抑制引导转录子合成的基因的表达,靶向转录子的RNAi剂也认为是靶向引导转录子合成的基因,即使基因本身(如在细胞的情况为基因组DNA)不认为与该剂或胞内沉默机器相互作用。因此靶向转录子的RNAi剂或载体理解为靶向为转录子合成提供模板的基因。
病毒“核蛋白”(也称“衣壳蛋白”或“核衣壳蛋白”)是一种病毒多肽,其隔离病毒RNA并影响病毒转录。病毒核蛋白能够形成核酸/蛋白复合体(即核糖核蛋白(RNP)复合体)。双链病毒中核蛋白也称为“NS”(如NS-6)。核蛋白不同于外部衣壳蛋白,后者通常不接触和隔离病毒基因组。术语“核蛋白mRNA”、“NP mRNA”、“核蛋白转录子”、和“NP转录子”理解为包括编码病毒核蛋白或如此处所述其功能等价物的任何mRNA。
本领域普通技术人员应理解,实现病毒核蛋白一种或多种功能的蛋白具有大量不同名称,取决于感兴趣的特定病毒。例如,在某些病毒如流感的情况该病毒称为核蛋白(NP),而在大量其他单链RNA病毒的情况,实现类似功能的蛋白质称为核衣壳(NC或N)蛋白。在另一些病毒中,既接触基因组核酸又在病毒颗粒中起结构作用的类似蛋白称为衣壳(C)蛋白。
术语“核蛋白mRNA”、“NP mRNA”、“核蛋白转录子”、和“NP转录子”理解为包括编码病毒核蛋白或如此处所述其功能等价物的任何mRNA。含有核蛋白基因或其功能等价物的任何病毒适合作为siRNA靶。通过非限制性示例的方式,靶病毒的若干组在此详细描述。
“患者”包括活着的生物,如人类、猴、奶牛、绵羊、马、猪、牛、山羊、狗、猫、小鼠、大鼠、从其培养的细胞、和转基因种。在优选实施方案中,患者是人。患者与“病人”同义。将本发明组合物给药于待处理的患者可通过已知途径、以至少有效治疗该患者的疾病的剂量和时段进行。达到治疗效果必需的有效量化合物可根据多种因素而不同,如患者年龄、性别、体重,以及治疗化合物处理患者外来物质的能力。可调整给药方案以提供最优的治疗反应。例如,可每天给药多个单独剂量,或者该剂量可根据治疗情况的要求所示成比例地减少。
如此处所用,用于数字的术语“大约”或“约”是通常取值包括落入该数字在任一方向(大于或小于该数字)5%范围内的数字,除非另外指明或从上下文明显看出(除了这种数字将超过可能值的100%)另外的说明。指明范围时,其端值包括在范围内,除非另外指明或从上下文明显看出另外的说明。
术语“互补”此处所用是根据本领域接受的含义,指特定碱基、核苷、核苷酸或核酸之间精确配对的能力。例如,腺嘌呤(A)和尿嘧啶(U)互补;(A)与胞嘧啶(T)互补;鸟嘌呤(G)和胸腺嘧啶(C)互补,在本领域中称为沃森-克里克碱基配对。如果第一核酸序列某位置的核苷酸与第二核酸序列相对位置的核苷酸互补,这些核苷酸形成互补碱基对,核酸在此位置互补。本领域普通技术人员应理解,核酸是以反向平行的方向排列(即,一条核酸以5’至3’方向而另一条是3’至5’方向)。两条核酸或其部分的互补程度可通过当两条核酸或其部分以反向平行的方向排列以最大化互补时,在一个评价窗上确定两条链中形成互补碱基对的核苷酸总数与核苷酸总数的百分比而评价。例如,AAAAAAAA(SEQ ID NO:11424)与TTTGTTAT(SEQID NO:11424)75%互补,因为互补碱基对中有12个核苷酸,而总共有16个。在一个评价窗上至少70%互补的核酸认为大致互补。具体地,如果评价窗长15-16个核苷酸,大致互补的核酸可在该窗内具有0-3个错配;如果评价窗长17个核苷酸,大致互补的核酸可在该窗内具有0-4个错配;如果评价窗长18个核苷酸,大致互补的核酸可在该窗内具有0-5个错配;如果评价窗长19个核苷酸,大致互补的核酸可在该窗内具有0-6个错配。在一些实施方案中,错配不是在连续的位置。在一些实施方案中,该窗含有长度不超过2个核苷酸的错配延展。在优选实施方案中,15-19个核苷酸的评价窗含有0-1个错配(优选0),20-29个核苷酸的评价窗含有0-2个错配(优选0-1,更优选0)。
“大致纯”包括已经从天然伴随其成分分离的化合物(如药物、蛋白质或多肽)。通常,当样品中总物质的(体积比、湿重或干重比、摩尔比或摩尔分数)至少10%是感兴趣化合物时,化合物是大致纯的,更优选至少20%,更优选至少50%,更优选至少60%,更优选至少75%,更优选至少90%,更优选至少99%。可通过任何合适方法测量纯度,例如在多肽的情况下通过柱色谱、凝胶电泳或HPLC分析。当化合物如蛋白质实质上不含有天然伴随的成分或当其从天然状态下伴随的天然污染物中分离时,该化合物也是大致纯的。均匀地纯的化合物蛋白质或多肽也包括在术语“大致纯”的含义中,例如当样品中至少95%的总蛋白质(体积比、湿重或干重比、摩尔比或摩尔分数)是感兴趣的蛋白质或多肽时。
“给药”包括使得本发明的组合物执行其期望功能(如治疗或预防病毒疾病)的给药途径。大量给药途径都是可能的,根据待治疗的疾病或疾患包括但不限于,胃肠外(如静脉内、动脉内、肌肉内、皮下注射)、口服(如饮食地)、吸入(如至肺的气溶胶)、局部、鼻、直肠或经由缓释微载体。吸入和胃肠外给药是优选的给药方式。给药化合物的剂型将根据所选给药途径而改变(如溶液、乳剂、凝胶、气溶胶、胶囊)。包含待给药化合物的合适组合物可制备于生理可接受的媒介物或载体以及任选的佐剂和防腐剂。对于溶液或乳剂,合适的载体包括例如,水或醇/水溶液、乳剂或悬浮液,包括盐水和缓冲介质、无菌水、膏、软膏、洗剂、油、糊剂和固态载体。胃肠外媒介物可包括氯化钠溶液、Ringer’s葡萄糖、葡萄糖和氯化钠、乳酸化Ringer’s或不挥发性油。静脉内媒介物可包括各种添加剂、防腐剂、或液体、营养物或电解质补充物(见Remington’s PharmaceuticalScience,第16版,Mack,Ed.(1980))。
“有效量”包括允许本发明的组合物执行其期望功能如部分或完全地治疗或预防病毒感染等的量。有效量将取决于多种因素,包括生物活性、年龄、体重、性别、一般健康、待治疗疾病的严重度、以及合适的药物动力学特征。例如,活性物质的剂量可从约0.01 mg/kg/天至约100mg/kg/天,有利地从0.1mg/kg/天至约10mg/kg/天。例如,siRNA以从约0.1mg/kg/天至约5mg/kg/天的剂量递送给患者。活性物质的治疗有效量可以单剂量或多剂量从合适途径给药。而且,活性物质的剂量可如治疗或预防情况的需求而成比例地增加或减少。
“药学可接受的载体”包括与化合物活性相容且对患者来说生理上可接受的任何和所有溶剂、分散介质、包衣、抗菌剂和抗真菌剂、等渗剂和吸收延迟剂等。药学可接受的载体的例子包括缓冲的生理盐水(0.15MNaCl)。这种介质和剂用于药物活性物质的使用是本领域熟知的。除非与治疗化合物不相容,否则任何常规介质或剂用于适于药物给药的组合物的使用都包括在内。辅助活性化合物也可并入组合物。
“附加成分”包括但不限于以下的一种或多种:赋形剂;表面活性剂;分散剂;惰性稀释剂;粒化剂和崩解剂;结合剂;润滑剂;甜味剂;调味剂;着色剂;防腐剂;生理可降解的组合物如明胶;水性载体和溶剂;油性载体和溶剂;悬浮剂;分散或润湿剂;乳化剂、缓和剂;缓冲剂;盐;增稠剂;填充剂;乳化剂;抗氧化剂;抗生素;抗真菌剂;稳定剂;和药物上可接受的聚合或疏水物质。可包括在本发明药用组合物的其它“附加成分”是本领域已知的,描述于如Remington’s Pharmaceutical Science。
“保守位点”
病毒的保守位点是对于所给区域在所有已知序列的超过约70%中存在的位点或序列。通过以下方式确定具有与保守位点序列相同的siRNA组:从每个已知病毒序列衍生所有19-mer序列片段,并评价每个序列片段存在于每组病毒序列中作为正确配对的频率。第一病毒序列含有从位置1延展至19的19-mer序列片段,另一个从位置2至20,再一个从位置3至21,持续下去直到第19核苷酸位点位于链的末端。
以这样的方式提取第二、第三和第四病毒序列,直到列表中所列的最后一个病毒序列。随后把序列片段加至序列片段的增加的表中,保持含有各19-mer片段的病毒序列的数目的计数。片段频率以含有各特异性19-mer片段的病毒序列的百分比来表达。本发明的siRNA组是序列相同性大于大多数已知序列的,优选大于已知序列约70%的那些序列。
“流感病毒的保守位点”不包括2003年9月29日提交的美国专利申请第10/674,159号、公布号US-2004-0242518-A1(J.Chen,Q.Ge和M.Eisen,“InfluenzaTherapeutic”)和以下表清楚列出的(Seq.ID No 69-108)中公布的。
“保守位点的变体”包括小数目的错配,其在靶RNA和siRNA双链体的反义引导序列之间是容许的。因此,靶向病毒中高度保守位点的单siRNA双链体将通常对相对于保守位点仅具有1个或几个错配的小变体仍是活性的。我们在算法中使用了病毒错配数据以增加可能的甲型流感病毒序列变体的列表,该变体可由所给的siRNA双链体靶向,如以下实施例15所述。
核蛋白作为RNAi靶
本发明提供了使用RNAi以治疗或预防如人类和非人类哺乳动物等患者病毒复制或感染的组合物和方法。优选地,该病毒是RNA病毒。例如,RNA病毒是负链病毒。或者,病毒是正链病毒或双链(ds)病毒。优选的靶RNA是核蛋白(也称为核衣壳)转录子,或实现病毒核蛋白功能的病毒基因的转录子。含有核蛋白基因或其功能等价物的任何病毒适合作为siRNA靶。通过非限制性示例的方式,以下更详细地描述多组靶病毒。
负链RNA病毒
负链RNA病毒具有为mRNA互补有义的病毒基因组。因此,负链RNA病毒进入宿主细胞以后初始活性之一是转录和产生病毒mRNA。为了这个目的,病毒粒子携带N-RNA结构,该结构由紧密连接于病毒核蛋白(N或NP,有时称为核衣壳蛋白)的病毒RNA(vRNA)组成。依赖于RNA的RNA聚合酶或者直接结合于N-RNA(如在流感病毒的情况),或者借助于辅助因子(如副粘病毒和杆状病毒的磷蛋白)的帮助而结合。完整的N-RNA而非无保护的vRNA是转录的实际模板,核蛋白促进N-RNA的核苷酸碱基暴露,用于有效地被合成酶通读。
表达和复制ssRNA(-)病毒的通用性显示为包括对RdRp的清楚的转录和复制,可能是由结合病毒粒子核蛋白(N或NP)亚基而激发。因此,RNA(-)和RNA(+)在复制复合体中可见与N蛋白复合。
用于本发明的负链RNA病毒包括人类呼吸道合胞病毒(RSV)、人类偏肺病毒(hMPV)、腮腺炎病毒、麻疹病毒、亨得拉病毒(Hendra virus)、新城疫病毒、流感病毒、疱疹性口炎病毒(VSV)、丁型肝炎病毒、马尔堡病毒、埃博拉病毒、汉坦病毒、辛诺柏病毒、拉沙热病毒、Lacrosse病毒、立夫特山谷热病毒、布尼亚病毒、白蛉热-西西里病毒、沙比亚病毒、瓜纳瑞托病毒、马丘坡病毒、胡宁病毒、淋巴细胞脉络丛脑膜炎病毒(LCMV)、和副流感病毒。其它合适的负链RNA病毒对本领域技术人员是已知的。示例病毒核蛋白核酸序列的Genbank登记号包括U41 071、NC_005077、K03362、NC_002045、NC_003443、NC_001781、AY297748、AF389119、AY705373、AY354458、NC_001608、AB027523和L37904。
流感
流感病毒是正粘病毒科的有包膜的负链RNA病毒。它们分为甲型流感、乙型流感和丙型流感,其中甲型流感是最有致病性的,认为是唯一能与动物种进行重排的类型。目前基于失活病毒的疫苗能在约70-80%的65岁以下健康个体中预防疾病;然而,这个比例在高龄或无免疫应答的个体中大大降低。此外,疫苗给药伴随的费用和可能的副作用使得该方法不是最优的。目前在美国批准了4种抗病毒药物以治疗和/或预防流感,即金刚烷胺、rimanadine、扎那米韦、奥塞米韦,但由于副作用、顺应性、和可能出现抗性株,它们的使用受到限制。因此,仍需要开发治疗和防止流感感染的有效药物。
流感核衣壳蛋白或核蛋白(NP)是与RNA片段相互作用以形成RNP的主要结构蛋白。它由甲型流感病毒的RNA片段5编码并长1,565核苷酸。NP含有498个氨基酸。NP蛋白在病毒复制中起重要作用。预测受感染细胞中NP蛋白分子的数量可调节mRNA合成相对于基因组RNA(vRNA和cRNA)复制的水平(1)。使用NP蛋白中温度敏感性突变,此前的研究表示cRNA而不是mRNA的合成在体外和体内都是温度敏感的(28、29)。还显示NP蛋白对于新生cRNA和vRNA的伸长和抗终止是需要的(29、30)。本发明已经发现,NP特异性siRNA抑制受感染细胞中所有病毒RNA的蓄积。NP特异性siRNA存在下,很可能新转录的NP mRNA被降解,导致抑制NP蛋白合成。没有新合成的NP,阻滞了进一步的病毒转录和复制,也阻滞了新病毒粒子产生。
副流感病毒
副流感病毒(PIV)是有包膜的,具有非节段的负链RNA基因组并属于单分子负链RNA病毒目的副粘病毒科。副流感病毒包括副粘病毒亚科的3个属中的2个,即人鼻病毒属(hPIV1和hPIV3)和腮腺炎病毒属(hPIV2和hPIV4)。作为引起婴儿和儿童下呼吸道疾病的常见起因,PIV次于RSV。PIV可导致生命周期中反复感染,通常表现为上呼吸道疾病(如感冒和/或咽喉痛)。PIV也可导致严重的下呼吸道疾病(如肺炎、支气管炎和细支气管炎),尤其在老年人和具有无免疫应答系统的患者。只有症状疗法可用于哮吼。没有特异性的抗病毒疗法。核衣壳(NP)蛋白长509至557氨基酸,氨基酸序列相对保守。NP包被基因组RNA和反基因组RNA,每个NP单体伴有6个核苷酸。RNA复制依赖于NP对新生RNA共合成的包被。分子的N-末端75%是更高度保守的部分。其参与与P形成可溶复合体,以及随后与其它NP单体及与RNA结合以形成核衣壳。
呼吸道合胞病毒
呼吸道合胞病毒(RSV)是负-义的,有包膜的RNA病毒,属于副粘病毒科的肺病毒属。RSV感染2岁以下儿童的上呼吸道和下呼吸道,也是老年人发病和死亡的重要原因。经受RSV细支气管炎的婴儿更易于在以后发展哮鸣和哮喘。疾病可能开始于URT症状,经过1-2天快速发展为弥散性小气道疾病。RSV还导致生命周期中反复感染,通常伴有中度-严重的感冒样症状;然而,严重的下呼吸道疾病可能发生于任何年龄,尤其在老年人或具有妥协的心脏、肺、或免疫系统的人群。
有效治疗和针对RSV疫苗的研究已经经历了约40年,几乎没有成功。目前,没有临床批准的针对RSV的疫苗。核衣壳(N)蛋白是涉及在RNA基因组包膜中的主要结构蛋白,对于基因组的复制和转录很重要。它长1176个核苷酸。
人类偏肺病毒
人类偏肺病毒(hMPV)是副粘病毒科的一个成员。该病毒是负-义的RNA病毒,可分成两个基因型(A和B),属于肺病毒亚科的偏肺病毒属。该病毒负责儿童、老年患者和无免疫应答的宿主的急性呼吸道感染。该病毒感染伴随的临床症状包括轻度至严重的呼吸问题和急性哮鸣以及细支气管炎和肺炎。核衣壳(N)基因长1,206个核苷酸,具有如N在RSV中的类似活性。
正链RNA病毒
正链RNA病毒具有完全或部分可翻译的基因组,并因此通常象裸RNA一样有感染性。这些病毒使用不依赖于帽的翻译起始、多蛋白加工和RNA复制机制以调节其病毒基因组表达。
多种病毒导致人类和动物的疾病。脊髓灰质炎病毒过去在世界范围导致了严重的脊髓灰质炎,并给试图根除此疾病的发展中国家带来了财政负担。人类鼻病毒导致了最广泛传播的病毒疾病之一,常见的感冒,对其没有有效的治疗或预防。口蹄疫病毒(FMDV)和口疮病毒导致近来在绵羊和牛的爆发,在欧洲农业产生了严重的财政风险。柯萨奇病毒导致诸如手足口综合征(主要在幼儿)、心肌炎、和球结膜等疾病。已知甲型肝炎病毒,一种肝病毒,是肝病的主要原因。
用于本发明的正链RNA病毒包括人类星状病毒、诺瓦克样病毒、冠形病毒、甲型、丙型和戊型肝炎病毒、黄热病病毒(Yellow fever virus)、脊髓灰质炎病毒、鼻病毒、脑心肌炎病毒、人类parechovirus、HIV-1、登革热病毒、西尼罗病毒、口蹄疫病毒、风疹病毒、和黄热病病毒。其它适当的正链RNA病毒对本领域技术人员是已知的。示例正链病毒核蛋白核酸序列的Genbank登记号包括AY391777、AJ3 13030、NC_001474、AY660002、D83645(衣壳)、X03700(衣壳)、和L24917(衣壳)。
人类冠状病毒
人类冠状病毒(HCoV)是冠状病毒科的成员,在环境中广泛存在,导致三分之一的常见感冒。该病毒是有包膜的病毒,具有达31kb的正链RNA基因组,这是所有RNA病毒中最大的已知基因组。人类冠状病毒导致10-30%的所有常见感冒。所有年龄组都受影响,对所有年龄组的感染率显示为是均一的。感染可为亚临床或很轻微的。更严重的下呼吸道感染报道于幼儿和老年人。相似毒株和不同毒株的再感染很常见。对一类冠状病毒的抗体不能防止另一类病毒或同一类病毒(在感染4个月后)的感染。
西尼罗病毒
西尼罗病毒(WNV)是黄病毒科的一个成员,近来在全美国蔓延,感染在2003年导致超过9000个病例和200例死亡。它在美国多个洲是病毒性脑炎的最常见原因。西尼罗病毒脑炎是一种动物传染病。病毒生命周期包括主要以鸟为宿主,以蚊子为载体。人类是偶然的宿主,不足以支持病毒的生命周期,因为低级的短暂病毒血症。然而,人类与人类之间通过血液、器官移植和哺乳的传染有过报道。目前流行病中的严重神经疾病频率表示了比通常伴有西尼罗热的毒株更有神经毒性的毒株。描述了多种神经学证据,但最典型的表现是伴有衰弱的脑炎。因此,对治疗西尼罗病毒没有显示一致的临床效应的治疗介入。
鼻病毒
人类鼻病毒是导致常见感冒和伴随的上呼吸道并发症的主要病原体。因为该病毒具有超过一百个血清型,预先暴露于鼻病毒几乎没有免疫保护,这导致更高的感染率(Hayden FG.Rhinovirus and the lower respiratory tract(鼻病毒与下呼吸道感染).Rev Med Virol.2004;14(1):17-31)。该感染导致小的自限性疾病,然而对哮喘患者、老年患者和无免疫应答的患者,鼻病毒感染可导致致命的并发症。该病毒是非包膜的正链RNA病毒,属于小核糖核酸病毒科,具有大约7200核苷酸的基因组。该病毒基因组一从宿主细胞质释放就立刻直接作为mRNA起作用(McKnight KL,Lemon SM.The rhinovirus type14 genome contains an internally located RNA structure that is required for viral replication(鼻病毒14型基因组含有病毒复制所需的内置RNA结构).RNA;4:1569-84)。
鼻病毒可通过气溶胶或直接接触而传送。接种的主要位置是鼻粘膜,尽管在较小程度上可涉及结膜(Tan WC.Viruses in asthma exacerbations(哮喘恶化中的病毒).Curr Opin Pulm Med.2005;11:21-6)。该病毒附于呼吸道上皮并局部扩展。对此病毒的主要人类受体是胞内黏附因子-1(ICAM-1)(WeinbergerM.Respiratory infection and asthma:current treatment strategies(呼吸道感染与哮喘:目前治疗策略).Drug Discov Today.2004;9:831-7)。一些RV血清型还上调人类上皮细胞ICAM-1的表达以增加感染的易感性(Papi A,Papadopoulos NG,StanciuLA,Degitz K,Holgate ST,Johnston SL.Effect of desloratadine and loratadine onrhinovirus-induced intercellular adhesion molecular 1 upregulation and promoter activationin respiratory epithelial cells(地氯雷他定和氯雷他定对呼吸上皮细胞中鼻病毒诱导的细胞内粘附分子1上调和启动子激活的作用).JAllergy Clin Immunol.2001;108:221-8)。该病毒在鼻通道和上支气管树中复制良好,而在下呼吸道复制得不好。培养周期大约2-3天。病毒血症是不常见的但病毒大量释放。病毒释放可在患者识别感冒症状若干天前发生,在疾病的2-7天达到峰值,并可持续长达3-4周。
上气道的鼻病毒感染已经与哮喘加重相联系,研究表明这是由与变态反应原暴露或与空气污染的附加或协同相互作用导致的(Tan,同上)。对鼻病毒的受损抗病毒免疫可导致受损的病毒清除并因此导致症状延长。显示Th-2细胞因子在人类鼻病毒受体的上调中起重要作用,并可以解释鼻病毒感染后哮喘患者疾病的加重(Bianco A,Sethi SK,Allen JT,Knight RA,Spiteri MA.Th2 cytokines exert a dominant influence on epithelial cell expression of the major grouphuman rhinovirus receptor,ICAM-1(Th2细胞因子对主要的人类鼻病毒受体ICAM-1的上皮细胞表达施加重要影响).Eur Respir J.1998;12:619-26)。
登革热病毒
登革热是一种地方性的病毒疾病,影响世界上的热带和亚热带地区。登革热(DF)和其更严重的形式登革出血热(DHF)和登革休克综合症(DSS),已经是严重的公共健康问题,近年来迅速地增加。该疾病现在在非洲、美洲、东地中海、南亚和西太平洋的超过100个国家地方性流行,威胁着超过25亿人(Gubler,D.J.1998.Dengue and dengue hemorrhagic fever(登革热和登革出血热).Clin.Microbiol.Rev.11:480-496)。世界卫生组织估计每年全世界有5000万至1亿例登革热病毒感染,导致每年250,000至500,000例DHF和24,000例死亡(Gibbons,R.v.,和D.W.Vaughn.2002.Dengue:an escalating problem(登革热:升级的问题).BMJ 324:1563-1566;世界卫生组织.1997.Denguehaemorrhagic fever:diagnosis,treatment,prevention and control(登革出血热:诊断、治疗、预防和控制),第2版.世界卫生组织,Geneva,Switzerland)。
登革热病毒是一种产生于蚊子的黄病毒,是世界上热带和亚热带区域最流行的虫媒病毒(Gubler,D.J.1997.Dengue and dengue hemorrhagic fever:itshistory and resurgence as a global public health problem(登革热和登革出血热:其作为全球公共健康问题的历史和再现),p.1-22.In D.J.Gubler和G.Kuno(编辑),Dengue anddengue hemorrhagic fever(登革热和登革出血热).CAB International,New York,N.Y.)。登革热病毒是正链有包膜的RNA病毒。基因组RNA长约11kb,包括3个编码核衣壳或核蛋白(C)、膜关联蛋白(M)、包膜蛋白(E)的结构蛋白基因和7个非结构(NS)蛋白基因。这些蛋白以约3,000氨基酸的多蛋白合成,由病毒和宿主蛋白酶共翻译和翻译后加工(Duebel,v.,R.M.Kinney,和D.W.Trent.1988.Nucleotide sequence and deduced amino acid sequence of thenonstructural proteins of dengue type 2 virus.Jamaica genotype:comparative analysis of thefull-length genome(登革热2型病毒Jamaica基因型的非结构蛋白的核苷酸序列和推测的氨基酸序列:全长基因组对比分析).Virology 165:234-244)。有4种不同血清型,血清型1至4。以一种血清型感染不能提供对另一种血清型的保护。相反,通常认为二次感染或以各种登革热病毒血清型二次或多次感染是DHF-DSS的主要风险因素,因为抗体依赖性增强(Halstead,S.B.1988.Pathogenesis of dengue:challenge to molecular biology(登革热的发病机理:挑战分子生物学).Science 239:476-481)。目前有针对这种病毒的有效疫苗。
该病毒导致广谱的疾病,从隐性感染、类流感轻度未分化热、和经典DF,到更严重的高发病率和高致死的形式DHF-DSS(Gubler,D.J.1998.Dengueand dengue hemorrhagic fever(登罩热和登革出血热).Clin.Microbiol.Rev.11:480-496)。
双链RNA病毒
双链RNA病毒是多来源的。呼肠孤病毒是研究最好的dsRNA病毒之一。该科的代表感染植物、动物和昆虫,很多感染昆虫载体以及动物或植物中间宿主。这些病毒都具有双重或三重衣壳结构,其外层在内吞进入时被剥除。细胞质中的裸核颗粒能够转录加帽且非-多聚腺苷酸化的基因组-片段-长度单顺反子mRNA,经由当合成并翻译它们时伴随进入细胞质的依赖于RNA的RNA聚合酶(RdRp)活性。病毒产物蓄积为病毒发生基质:病毒结构蛋白和聚合酶蛋白以及mRNA的联合导致组装不成熟的颗粒,其中mRNA转录以得到负链RNA分子,它们一起碱基配对。中间产物和内部衣壳蛋白的重要性示于轮状病毒的实施例。
用于本发明的双链RNA病毒包括轮状病毒、呼肠孤病毒、哺乳动物正呼肠弧病毒(orthoriovirus)和科罗拉多蜱热病毒。其它合适的双链RNA病毒对本领域技术人员是已知的。示例双链病毒核蛋白核酸序列的Genbank登记号包括K02086(VP6)和X14942(VP2)。
轮状病毒
轮状病毒是呼肠孤病毒科的一个成员,是导致婴儿和幼儿急性胃肠炎的重要原因(Kapikian,A.Z.2001,Rotaviruss,p.1787-1833.Fields virology,第4版.Lippincott/The Williams&Wilkins Co.,Philadelphia,Pa.)。病毒粒子是二十面体,由三个蛋白中心层和双链RNA(dsRNA)的11个片段的基因组组成(Prasad,B.V.1988,J.Mol.Biol.199:269-275)。感染性三层颗粒(TLP)的外层由糖蛋白VP7和突起蛋白VP4构成。中间层由VP6三聚物构成,内层由核晶格蛋白VP2构成。位于VP2晶格至高点的是RNA依赖性RNA聚合酶(RdRp)VP1和mRNA-加帽酶VP3的各拷贝(Lawton,J.A.,1997,J.Virol.71:7353)。
形成病毒中间层的VP6通过其与外层蛋白VP7和VP4,与内层蛋白VP4和VP7,以及与内层蛋白VP2的相互作用,整合了病毒的两种主要功能:进入细胞和内源转录。VP6本身尽管没有任何酶功能,但对于基因组的内源转录是关键的。Cryo-EM研究显示,新生mRNA转录子通过VP6层中的I型通道特异性地离开(Lawton,J.A.,2000,Adv.Virus Res.55,185-229)。基于拟-原子模型对VP6层的突变分析进一步证明,VP6三聚体在VP2上的合适组装对内源转录是绝对需要的。位点-特异性氨基酸置换部分或完全地终止了转录酶活性(Charpilienne,A.,2002,J.Virol.76,7822-7831)。转录子经由衣壳层(轮状病毒VP6层的等价物)通道的离开显示为dsRNA病毒的通常主题。该层中的区域已经显示出还作用为转录反应的底物池(substratesinks)。
VP2形成与外部VP6层和内部基因组RNA相互作用的最内层。VP2通过其N-末端残基表现结合RNA的能力。VP2在维持RNA链之间适当距离以允许基因组RNA在转录过程中围绕转录复合体移动中起重要作用(Pesavento,J.B.,2001,Proc.Natl.Acad.Sci.U.S.A.,98,1381-1386)。因此,VP2的一个主要功能是引导基因组的结构组建,使其对其内源转录有传导性。
RNA诱导实体-siRNA和shRNA分子
本发明的特征为siRNA分子,制备siRNA分子的方法和使用siRNA分子的方法(如预防和/或治疗方法和研究方法)。siRNA分子长度可从约10-60核苷酸或更多核苷酸(或核苷酸类似物),约15-25个核苷酸(或核苷酸类似物),或约19-23个核苷酸(或核苷酸类似物)。siRNA分子的核苷酸(或核苷酸类似物)长度可为约10-20、20-30、30-40、40-50、15、16、17、18、19、20、21、22、23、24、25、26、27、28或29个。在优选实施方案中,siRNA分子长度为19个核苷酸。应理解上述范围包括的所有范围和值都在本发明范围内。一般,长dsRNA(超过60个核苷酸)是较不优选的,因为发现它们可诱导哺乳动物细胞如人类细胞中的细胞死亡(称为“干扰素应答”)。siRNA可优选地包括5’末端磷酸和3,约1或2核苷酸的短突出端。在优选实施方案中,诱导RNAi的实体可为短发夹siRNA(shRNA)或表达的shRNA。这种shRNA的例子和制备方法在实施例中讨论。在另一实施方案中,siRNA可在siRNA复合体中与一种或多种蛋白联合。
提供本发明的siRNA分子以通过如下结合方式至少部分地结合靶病毒转录子来减少宿主细胞中病毒基因表达:导致靶病毒转录子被宿主细胞机器破坏。因此,本发明的siRNA分子包括序列,该序列足够互补于病毒核蛋白基因的一部分以介导如本文所定义的RNA干扰(RNAi),即siRNA具有足够特异性以由RNAi机器或过程激发靶RNA降解的序列。siRNA可被设计为反义链的每个残基互补于靶分子中的残基。或者,可在分子内形成置换以增加所述分子的稳定性和/或增强所述分子的加工活性。可在链的内部形成置换,或在链末端的残基形成置换。
siRNA引导的靶RNA裂解反应是高度序列特异性的。通常,含有与靶基因一个部分相同的核苷酸序列的siRNA是优选用于抑制的。由于本发明的siRNA通常以双链分子提供,siRNA反义链的相同性和互补性可相对于靶转录子确定。因此,如此处所用,与编码病毒核蛋白的核酸的一部分相同的核酸序列的公布包括双链siRNA的两条链。然而,认识到siRNA与靶基因之间100%的序列相同性不是实践本发明所必需的。因此本发明的优点是,能够经受序列变异,这可能是因为遗传突变、菌株多态性、或进化趋异。例如,相对于靶序列带有插入、缺失和单点突变的siRNA对抑制是有效的。或者,带有核苷酸类似物置换或插入的siRNA序列对抑制是有效的。而且,siRNA的所有位点不是同等贡献于识别靶。siRNA中心的错配是最重要的并可实质上破坏靶RNA裂解。相反,siRNA的3’核苷酸(如siRNA反义链的3’核苷酸)通常不显著贡献于特异性识别靶。尤其是,与靶RNA(如引导序列)互补的siRNA序列的3’残基通常对于靶RNA裂解不是关键的。
本领域已知的是不是所有siRNA在减少或抑制任何特定靶基因表达中同等地有效。(见,T.,等,Nucleic Acids Res.,30(8):1757-1766,报道不同siRNA效力的变异性),采用多种考虑因素以增加选择的siRNA有效的可能性。例如,选择外显子而不是内含子内的靶部分可为优选的。siRNA通常可根据描述于以下的原理来设计:Technical Bulletin # 003-Revision B,“siRNA Oligonucleotides for RNAi Applications(用于RNAi应用的siRNA寡核苷酸)”和Technical Bulletin#4,Dharmacon Research,Inc.,Lafayette,CO80026,RNA试剂的供应商。Dharmacon的The RNAi Technical Reference &Application Guide(RNAi技术参考&应用指南)含有多种涉及siRNA设计参数、合成等信息,通过引用合并于此。其它可采用的设计考虑因素描述于Semizarov,D.,等,Proc.Natl.Acad.Sci,Vol.100,No.11,pp.6347-6352.
可经由本领域已知的序列比较和比对算法来确定序列相同性。为了确定两个核酸序列(或两个氨基酸序列)的相同性百分比,为了优化比较目标进行序列比对(如,可在第一序列或第二序列引入缺口以优化比对)。然后比较相应核苷酸(或氨基酸)位置上的核苷酸(或氨基酸残基)。当第一序列中的位置由第二序列中相应位置的相同残基占据时,在此位置分子是相同的。两个序列之间相同性百分比是序列间分享相同位置的函数(即%同源性=相同位置的数目/位置总数目×100),任选地对引入缺口的数目和/或引入缺口的长度罚分。
可使用数学算法来实现序列的比较和两序列间相同性百分比的确定。在一个实施方案中,在所比对序列的具有足够相同性的部分产生比对,而在具有较低相同性的部分不产生(即,局部比对)。用于序列比较的局部比对算法的优选非限制性例子是Karlin & Altschul,Proc.Natl.Acad.Sci.USA 87:2264-68(1990)的算法,调整为Karlin & Altschul,Proc.Natl.Acad.Sci.USA 90:5873-77(1993)。这样的算法并入Altschul,等,J.Mol.Biol.215:403-10(1990)的BLAST程序(2.0版本)中。在一个实施方案中,该算法通过引入合适的缺口而优化,在所比对序列的长度上确定相同性百分比(即,缺口比对)。为了获得比较目的的缺口比对,Gapped BLAST可如Altschul,等,Nucleic Acids Res.25(17):3389-3402(1997)描述的使用。在另一个实施方案中,通过引入合适的缺口而优化比对,在所比对的序列的全长确定相同性百分比(即,总体比对)。用于序列总体比较的数学算法的优选非限制性例子是Myers和Miller,CABIOS(1989)的算法。这样的算法并入ALIGN程序(2.0版本),其是GCG序列比对软件包的一部分。当使用ALIGN程序用于比较氨基酸序列时,可使用PAM120重量残基平台、缺口长度罚分为12,缺口罚分为4。
siRNA(如siRNA的反义链)与靶基因部分之间,大于80%的序列相同性是优选的,如84%、89%、91%、92%、93%、94%、95%、96%、97%、98%、99%、或甚至100%。siRNA约19-25核苷酸的情况,如至少16-21相同核苷酸是优选的,更优选至少17-22相同核苷酸,甚至更优选至少18-23或19-24相同核苷酸。换言之,在长约19-25核苷酸的siRNA,具有不超过约4个错配的siRNA是优选的,优选地不超过3个错配,更优选地不超过2个错配,甚至更优选地不超过1个错配。例如,siRNA含有靶序列中具有1、2、3、或4错配的反义链。
或者,siRNA可根据功能定义,如包括能与靶基因转录子一部分杂交的核苷酸序列(或寡核苷酸序列)(如,400 mM NaCl,40 mM PIPES pH 6.4,1mM EDTA,50℃或70℃杂交12-16小时;然后洗涤)。其它优选的杂交条件包括在70℃、1×SSC或50℃、1×SSC杂交,50%甲酰胺,然后在70℃、0.3×SSC洗涤,或在70℃、4×SSC或50℃、4×SSC杂交,50%甲酰胺,然后在67℃、1×SSC洗涤。预期长度小于59碱基对的杂合体的杂交温度应该比杂合体的变性温度(Tm)低5-10℃,Tm根据以下方程来确定。对于长度小于18碱基对的杂合体,Tm(℃)=2(A+T碱基的#)+4(G+C碱基的#)。对于长度18至49碱基对的杂合体,Tm(℃)=81.5+16.6(log10[Na+])+0.41(%G+C)(600/N),其中N是杂合体中碱基的数目,[Na+]是杂交缓冲液中钠离子的浓度(1×SSC的[Na+]=0.165M)。对多核苷酸杂交的严格条件的其它例子提供于Sambrook,等,1989,MolecularCloning:A Laboratory Manual,Cold Spring Harbor Laboratory Press,ColdSpring Harbor,N.Y.,chapter 9 and 11,和Current Protocols in MolecularBiology,1995,F.M.Ausubel,等编辑,John Wiley&Sons,Inc.,sections 2.10和6.3-6.4,在此并入。相同核苷酸序列的长度可为至少约10、12、15、17、20、22、25、27、30、32、35、37、40、42、45、47或50碱基。
在一个实施方案,本发明的RNA分子被修饰,以至提高在用于细胞培养的血清或生长培养基中的稳定性。为了增强稳定性,3’-残基可被稳定以避免降解,如可选择它们以使其由嘌呤核苷酸如腺嘌呤或鸟嘌呤核苷酸组成。或者,嘧啶核苷酸被修饰的类似物的置换,如尿嘧啶被2’-脱氧胸腺嘧啶的置换是耐受的并不影响RNA干扰的效力。例如,没有2’羟基可显著增强组织培养基中siRNA的核酶抗性。
在本发明优选实施方案中,RNA分子可含有至少一个修饰的核苷酸类似物(或类似物)。核苷酸类似物可位于靶特异性活性如RNAi介导活性大致不受影响的位置,如RNA分子5’-端或3’-端的区域。尤其是,可通过并入修饰的核苷酸类似物使得末端稳定化。优选的核苷酸类似物包括糖-和/或骨架-修饰的核糖核苷酸(即,包括对磷酸-糖骨架的修饰)。例如,天然RNA的磷酸二酯键可被修饰以包括至少一个氮或硫杂原子。在优选的骨架修饰核糖核苷酸中,连接于相邻核糖核苷酸的磷酸酯基团被修饰基团如硫代磷酸基团代替。在优选的糖修饰核糖核苷酸中,2’OH基团由选自H、OR、R、卤素、SH、SR、NH2、NHR、NR2或ON的基团代替,其中R是C1-C6烷基、链烯基或炔基,卤素为F、CI、Br或I。
优选的还有核碱基-修饰的核糖核苷酸,即,含有至少一个非天然产生的核碱基而不是天然产生的核碱基的核苷酸。可修饰碱基以阻滞腺苷脱氨酶的活性。示例性修饰核碱基包括但不限于,在5-位置修饰的尿苷和/或胞苷,如,5-(2-氨基)丙基尿苷、5-溴尿苷;在8位置修饰的腺苷和/或鸟苷,如,8-溴鸟苷;去氮核苷酸,如,7-去氮-腺苷;O-和N-烷基化核苷酸,如,N6-甲基腺苷是合适的。应注意上述修饰可以结合。
在一些实施方案中,siRNA可通过以修饰核苷酸置换至少一个核苷酸而被修饰。siRNA与核蛋白转录子靶序列相比可具有一个或多个错配而仍然介导RNAi,如以下实施例所证明的。
本发明核蛋白引导siRNA介导RNAi的能力当考虑此处所提供病毒的一些基因的快速突变率时是尤其有利的,如流感病毒基因。由于发明人认识到核蛋白基因通常与其它病毒基因相比具有较低突变率,发明人提供了核蛋白基因作为RNAi靶的用途。而且,在本发明一些实施方案中,siRNA靶向于病毒核蛋白基因的保守区域。本发明包括多个实施方案,其进一步影响此能力,通过例如合成患者特异性siRNA或质粒,和/或沿着核蛋白基因交错引入多个siRNA。在一个实施方案,核蛋白基因的高度和/或中度保守的区域被靶向,如以下更详细讨论的。在其它实施方案中,生物样品获自患者。如此处所用,生物样品是获自含有病毒核酸的患者的任何物质。例如,获得宿主患者的一种或多种受感染细胞,将其中病毒核蛋白基因的基因组测序或以其它方式分析以选择或合成一个或多个相应得siRNA、质粒或转基因。
siRNA 的制备
在一个实施方案中,体内或体外合成siRNA。细胞的内源RNA聚合酶可介导体内转录,或克隆的RNA聚合酶可用于体内或体外转录。对于从体内转基因或表达构建体的转录,调节区域(如启动子、增强子、沉默子、或剪接供体和受体)可用于转录siRNA。通过在器官、组织、或细胞类型中特异性转录;环境条件(如感染、应激、温度、滑雪诱导物)的刺激;和/或在发育阶段或年龄的工程转录,可靶向抑制。通过引入重组构建体至受精卵、胚胎干细胞、或其它来自合适生物体的多潜能细胞,可产生表达来自重组构建体的siRNA的转基因生物体。
此外,不仅siRNA可用于产生细胞内的多RNA,细胞内还可由宿主细胞酶复制和扩增siRNA。Alberts,等,The Cell 452(第4版.2002)。
可酶解或部分/完全有机合成来产生RNA,可经由体外酶或有机合成引入任何修饰的核苷酸。在一个实施方案,化学制备siRNA。合成RNA的方法是本领域已知的,尤其是Verma和Eckstein,Ammul Rev.Biochem.67:99-134(1998)所述的化学合成方法。另一个实施方案中,酶解制备siRNA。例如,可通过酶处理具有与期望靶RNA足够互补的长dsRNA来制备siRNA。长dsRNA的处理可在体外实现,例如使用合适的细胞裂解酶,可经由凝胶电泳或凝胶过滤随后纯化ds-siRNA。在一个示例实施方案中,可从混合物由溶剂或树脂提取、沉淀、电泳、色谱法或其组合纯化RNA。或者,可使用RNA而不纯化或最少地纯化以避免由于样品处理的损失。
还可由从合成DNA模板或从重组菌分离的DNA质粒的酶转录而制备RNA。通常,使用噬菌体RNA聚合酶,如T7、T3或SP6 RNA聚合酶(Milligan&Uhlenbeck,Methods Enzymol.180:51-62(1989))。RNA可干燥以贮存或溶解于水溶液。该溶液可含有缓冲剂或盐以抑制退火,和/或促进单链的稳定。
siRNA载体
本发明的另一方面包括一种载体,其表达一种或多种包括与核蛋白基因组的一部分足够互补以介导RNAi的序列的siRNA。该载体可体内给药以通过表达一种或多种siRNA拷贝而起始RNAi治疗或预防。在一个实施方案,在质粒载体中表达合成的shRNA。另一实施方案中,质粒在体内复制。在另一实施方案中,载体可为病毒载体,如逆转录病毒载体。这种质粒和其制备方法的例子表示于实施例。载体和质粒的使用是有利的,因为载体比合成的siRNA稳定,并因此实现siRNA的长期表达。
一些靶病毒快速突变并可能导致在一些情况下可妨碍RNAi的即使一个核苷酸的错配。因此,在一个实施方案中,关注了这样载体:其表达多种siRNA以提高足以介导RNAi的同源性的概率。优选地,这些siRNA沿核蛋白基因交错分布,或者集中于核蛋白基因的一个区域。例如,多种siRNA可导向核蛋白基因长约200核苷酸并包括核蛋白基因3’端的区域。在一个实施方案中,载体表达的一种或多种siRNA是shRNA。siRNA可沿着核蛋白基因一个部分交错,或靶向核蛋白基因的不同部分。在一个实施方案中,载体编码约3 siRNA,更优选约5 siRNA。siRNA可靶向于核蛋白基因的保守区域。
引入RNA的方法、载体和宿主细胞
引入本发明物质(如siRNA、载体或转基因)的物理方法包括注射含有所述物质的溶液,所述物质覆盖的颗粒的轰击、在所述物质的溶液中浸泡细胞或有机体,或在所述物质存在下对细胞膜电穿孔。包入病毒粒子的病毒构建体将实现向细胞引入表达构建体和表达构建体编码的RNA包括siRNA的转录。可使用本领域已知的将核酸引入细胞的其它方法,如脂质介导的载体转运,化合物如磷酸钙介导的转运,等等。因此,siRNA可与表现一种或多种其它活性的组分一起引入,所述活性如增强siRNA的细胞摄取,抑制两条siRNA链间的退火,稳定单链,或以其它方式增加对靶基因的抑制。
所述物质可直接引入细胞(即胞内地);或胞外地引入体腔、细胞间质,引入有机体的循环,口服引入,吸入,或通过将细胞或有机体浴于含有RNA的溶液而引入。所述物质可引入血管循环或血管外循环、血液或淋巴系统、和脑脊髓液。
细胞可以在递送所述物质时感染靶病毒或在物质递送之后暴露于靶病毒。该细胞可能衍生自任何有机体或包含在任何有机体中。细胞可能来自种系、体细胞、全能或多能、分裂或非分裂、薄壁组织或上皮组织,永生化的或变异的等等。细胞可为干细胞或分化细胞。
根据特定靶基因和所递送的双链RNA物质的剂量,该方法可提供靶基因的部分或完全功能丧失。基因表达在至少50%、60%、70%、80%、90%、95%或99%或更多的靶细胞中减少或丧失是典型的。基因表达的抑制是指病毒蛋白、RNA、和/或DNA水平的不存在(或可观察到的降低)。特异性是指抑制靶基因而不对其它基因尤其是宿主细胞的其它基因产生影响的能力。抑制的结果可通过检查细胞或有机体的外部特征或生化技术而证实,所述生化技术如RNA溶液杂交、核酶保护、Northern杂交、以微阵列监控反转录基因表达、抗体结合、酶联免疫吸附测定(ELISA)、整合检测(integration assay)、Western点杂交、放射免疫测定(RIA)、其它免疫测定、以及荧光活化细胞分析(FACS)。
对于细胞系或完整生物体中RNA介导的抑制,通过使用其蛋白产物容易检测的报告基因或药物抗性基因方便地检测基因表达。这样的报告基因包括乙酰羟基酸合成酶(AHAS)、碱性磷酸酶(AP)、β半乳糖苷酶(LacZ)、β糖玻璃酸酶(GUS)、氯霉素乙酰转移酶(CAT)、绿色荧光蛋白(GFP)、辣根过氧化物酶(HRP)、萤光素酶(Luc)、胭脂碱合成酶(NOS)、章鱼碱合成酶(OCS)、及其衍生物。有多种选择性标记,其赋予对氨苄西林、博来霉素、氯霉素、庆大霉素(gentarnycin)、潮霉素、卡那霉素、林可霉素、甲氨喋呤、草丁膦、嘌呤霉素、和四环素的抗性。根据检测,基因表达量的定量使得人们能确定与没有根据本发明处理的细胞相比,抑制程度为大于10%、33%、50%、90%、95%或99%。给药siRNA之后较低剂量注射物质和较长时间可导致细胞小部分的抑制(如靶细胞的至少10%、20%、50%、75%、90%或95%)。
细胞中基因表达的定量可显示靶RNA蓄积或靶蛋白翻译水平的类似量的抑制。作为例子,抑制的效力可通过评价细胞中基因产物的量而确定;以具有用于抑制双链RNA区域以外的核苷酸序列的杂交探针而检测RNA,或翻译的多肽可通过针对该区域多肽序列产生的抗体而检测。
siRNA可以允许递送每细胞至少一个拷贝的量而引入。物质的更高剂量(如每细胞至少5、10、100、500或1000拷贝)可产生更有效的抑制;更低剂量也可用于具体应用。
诊断方法和试剂盒
本发明包括一种识别方法,即如病毒导致的感染等传染病的基于RNAi的治疗,可期望地并入诊断步骤,该诊断步骤确定需要治疗的患者是否感染了对一种或多种诱导RNAi的实体抑制敏感的传染原。“对抑制敏感”是指传染原的一种或多种生物活性可通过给药诱导RNAi的实体于患者而有效抑制。优选地抑制传染原的复制、病原性、传播和/或生产。例如,当诱导RNAi的实体以耐受剂量给药于患者时,传染原的复制、病原性、传播或生产优选地被抑制至少25%。优选地该抑制足以产生治疗上有用的效果。
流感病毒用于非限制性例子来说明本发明的诊断方法,其被定制以允许选择适于患有感染的患者的诱导RNAi的实体。然而应理解,此处公开的方法适于此处所述的任何病毒或将被本领域技术人员识别的任何病毒。所选择的诱导RNAi的实体当然也可能被给药以预防,例如给药于接触了受感染个体的个体,而不考虑这些个体是否已经发展了感染症状。
本发明因此提供了诊断病毒感染并确定患者是否感染病毒的方法。在一些实施方案中,该方法包括确定患者是否感染了病毒,该病毒由本发明的靶向病毒核蛋白转录子的一种或多种诱导RNAi的实体抑制。例如,从怀疑具有病毒感染如流感的患者获得样品(如痰、唾液、鼻洗液、鼻拭物、气管洗液、支气管肺泡灌洗(BAL)液、生物活检样本)。样品可经受一个或多个加工步骤。任何这样的加工样品可认为获自患者。分析样品以确定其是否含有病毒特异性核酸,尤其是核蛋白转录子。“病毒特异性核酸”是任何源自病毒或衍生自病毒的任何核酸或其互补物,并可作为样品中病毒存在的指征,且任选地用于识别毒株和/或病毒基因的序列。核酸可已经在分离后经受了加工步骤。例如,它可为反转录的、扩增的、裂解的,等等。在一些实施方案中,样品中存在的病毒特异性核酸或其互补物的序列与RNAi诱导剂如siRNA或shRNA的反义链或有义链的序列进行比较。“比较”一词以宽泛的含义使用,指任何评价序列的方法,例如,可确定该序列在一个或多个位置是否与参考序列相同或不同,或可由其评价差异的程度。
可使用任何广泛多样的基于核酸的检测。在一些实施方案中,诊断检测使用一种核酸,该核酸包括有利和/或高度保守的靶部分或其互补物,或有利和/或高度保守部分或其互补物的片段。在一些实施方案中,例如在如下所述的检测中,该核酸作为扩增引物或杂交探针。
在一些实施方案中,扩增样品中流感特异性核酸。等温靶扩增方法包括转录介导的扩增(TMA)、自动维持序列扩增(3SR)、基于核酸序列的扩增(NASBA)、和其变化。可使用本领域已知的任何多种方法进行检测或比较,如基于扩增的检测、杂交检测、引物延伸检测(如等位基因特异性引物延伸,其中不同流感病毒株的相应靶部分对基因的不同等位基因是同源的)、寡核苷酸连接检测(美国专利No.5,185,243、5,679,524和5,573,907)、裂解检测、异源双链体追踪分析(HTA)检测等。例子包括Taqman检测、Applied Biosystems(美国专利No.5,723,591)。也可采用循环探针技术(CPT),其是基于信号扩增或探针扩增而不是靶扩增的核酸检测系统(美国专利No.5,011,769、5,403,711、5,660,988、和4,876,187)。侵入性裂解检测,如Invader检测(Third Wave Technologies),描述于Eis,P.S.等,Nat.Biotechnol.19:673,2001,可用于检测流感特异性核酸。可使用基于分子信标的检测(美国专利No.6,277,607;6,150,097;6,037,130)或荧光能量转移(FRET)。分子信标是寡核苷酸发夹,在结合于完美匹配的模板时经历构象变化。
在一些实施方案中,该检测确定样品中的流感特异性核酸是否包括与诱导RNAi的实体的有义链或反义链相同或不同的部分。任选地,如果有确切的差异的话则鉴别确切差异。该信息用于确定流感病毒是否对诱导RNAi的实体抑制敏感。除了以上所述的,用于对传染原检测和/或基因分型的合适检测描述于Molecular Microbiology:Diagnostic Principles andPractice(分子生物学:诊断原理与实践),Persing,D.H.,等(编辑)Washington,D.C.:ASM Press,2004.
诊断检测可采用此处所述的任何核酸。在本发明一些实施方案中,该核酸包括不是与核蛋白转录子大致互补或大致相同的核酸部分。例如,核酸可包括引物结合位点(如用于通用测序引物或扩增引物的结合位点)、杂交标记(可能例如用于从含有其它核酸的样品分离该核酸)等。在本发明一些实施方案中,该核酸包括非核苷酸部分。该非核苷酸部分可连接于核酸的末端核苷酸,如在3’端。该部分可保护核酸不受降解。在一些实施方案中,该非核苷酸部分是可检测的部分,如荧光染料、放射性原子、荧光能量转移(FRET)对、猝灭剂等。在一些实施方案中,该非核酸部分是结合部分,如生物素或抗生物素蛋白。在一些实施方案中,该非核酸部分是半抗原,如地高辛、2,4-二硝基苯基(TEG)等。在一些实施方案中,该非核酸部分是对分离核酸有用的标记。
在一些实施方案中,核酸连接于支持物,如一种微粒如珠,其任选是磁性的。本发明进一步提供阵列,其包含本发明的多种核酸,例如至少10、20、50等。该核酸共价或非共价地连接于支持物,如大致平面的支持物如载玻片。见美国专利No.5,744,305;5,800,992;6,646,243。
从实验或从此前对具有核蛋白基因内特定序列的病毒治疗的实验中获得的信息也可用于确定该病毒是否对所给的诱导RNAi的实体或其组合的抑制敏感。敏感性信息还可包括例如基于核蛋白病毒序列与抑制剂的反义链之间存在的任何错配的期望效应的理论预测。
本发明提供了用于检测病毒感染的诊断试剂盒。一些试剂盒包括本发明的一种或多种核酸。一些试剂盒包括可用于检测包括用于RNAi的优选靶部分的部分的核蛋白病毒转录子的一种或多种核酸。试剂盒可包括选自以下组的一项或多项:探针、引物、序列特异性寡核苷酸、酶、底物、抗体、核苷酸群体、缓冲剂、阳性对照和阴性对照。可标记核苷酸。例如,可提供荧光标记的核苷酸的一种或多种群体,如dNTP、ddNTP等。
探针可为包括靶部分全部或部分的核酸,如高度保守或有利保守的核蛋白靶部分,或其互补物,或与靶部分至少80%相同或互补,如100%相同或互补。在一些实施方案中,提供了多种探针。这些探针在一个或多个位置上不同,可用于确定在这些位置上核蛋白病毒的准确序列。例如,探针可不同地杂交于转录子(如只有当探针与转录子的靶部分100%互补时才发生杂交)。本发明的试剂盒可包括标本收集材料,如拭子、试管等。试剂盒的组分可包装于单个导管或试管,其通常提供于容器中,如使用商业销售的塑料或泡沫聚苯乙烯容器,伴有指导试剂盒使用的说明。处理方法
本发明提供了用于处理有患病毒风险(或易于患病毒)的患者或具有病毒的患者的预防方法和治疗方法。此处所用“处理(treatment)”或“处理(treating)”定义为应用或给药治疗剂(如siRNA或载体或编码其的转基因)于患者,或应用或给药治疗剂于从患者分离的组织或细胞系,该患者具有病毒,目的为治愈、愈合、减轻、缓解、改变、补救、改善、改进或影响病毒或病毒症状。术语“处理(treatment)”或“处理(treating)”此处也用于指预防地给药药剂,如以针对病毒而接种。
考虑到处理的预防方法和治疗方法,这样的处理可基于药物基因组学领域获得的知识而特殊地定制或修改。此处所用的“药物基因组学”是指应用基因组技术如基因测序、统计遗传学和基因表达分析于临床开发和市场的药物。更具体地,该术语是指研究患者的基因如何确定其对药物的反应(如患者的“药物反应表型”或“药物反应基因型”)。因此,本发明的另一方面提供了定制个体的预防处理或治疗处理的方法,使用根据该个体的药物反应基因型的本发明的靶基因分子或靶基因调节物。
在相关实施方案中,两种或多种不同诱导RNAi剂的群体给药于患者,患者可为病毒的宿主。在一个实施方案中,两种或多种RNAi诱导剂的群体包括含有引导链的剂,引导链的序列与特定病毒多种毒株的相同高度保守区大致互补(优选100%互补)。在另一实施方案中,两种或多种RNAi诱导剂的群体包括含有引导链的物质,引导链的序列与同一病毒毒株的不同高度保守区大致互补(优选100%互补)。在另一实施方案中,两种或多种RNAi诱导剂的群体包括含有引导链的物质,引导链的序列与特定病毒(如,流感病毒)多种毒株的相同高度保守区大致互补(优选100%互补),并且RNAi诱导剂包括含有引导链的物质,引导链的序列与同一病毒毒株的不同高度保守区大致互补(优选100%互补)。
预防方法
在一个方面,本发明提供了一种防止患者病毒感染或病毒感染相关疾病的方法,通过给药于患者预防有效的药剂,该药剂包括此处所讨论的任何siRNA或载体或转基因。预防剂的给药可发生在表现出病毒感染的典型症状如病毒感染之前。
在优选实施方案中,预防有效的剂在暴露于靶病毒之前给药于患者。在另一实施方案中,该剂在暴露于靶病毒之后给药于患者以延迟或抑制其发展,或阻止其整合入健康细胞或不含有原病毒的细胞的DNA。优选地,抑制或阻止靶病毒信息。此外或可替代地,抑制或阻止靶病毒复制是优选的。在一个实施方案中,siRNA在靶病毒RNA复制的早期阶段降解靶病毒RNA,例如在进入细胞之后立即发生。以这种方式,药剂可阻止患者的健康细胞不受感染。在另一实施方案中,siRNA在复制的后期降解病毒MRNA。在这些方法中可采用此处所述任何策略,例如给药表达多种足够互补于病毒核蛋白基因以介导RNAi的siRNA的载体。
治疗方法
本发明的另一方面涉及为了治疗目的而调节靶基因表达、蛋白表达或活性的方法。因此,在一个示范实施方案中,本发明的调节方法包括将病毒感染的细胞接触治疗剂(如siRNA或编码其的载体或转基因),该治疗剂对病毒基因组的一部分是特异性的,从而介导RNAi。这些调节方法可在体外进行(如以所述剂培养细胞)、或可选择地,在体内进行(如给药所述剂于患者)。该方法可在体外进行,然后将产物引入患者(如基因治疗)。
本发明的治疗方法通常包括经由给药药剂于病毒(如流感)感染的患者而开始RNAi。该药剂可包括一种或多种siRNA、一种或多种siRNA复合体、表达一种或多种siRNA(包括shRNA)的载体、或编码一种或多种siRNA的转基因。本发明的治疗方法能减少病毒产生(如病毒滴度或原病毒滴度)约30-50倍,优选约60-80倍,更优选约(或至少)90倍、100倍、200倍、300倍、400倍、500倍或1000倍。
此外,本发明的治疗剂和方法可与转录后方法(如,以核酶和/或反义siRNA)用于共治疗。
双重预防和治疗方法
在一个优选方法中,对已经暴露于靶病毒的患者进行对靶病毒的双向攻击。通过在病毒复制的早期阶段和整合入宿主细胞基因组之前降解病毒,可预防和治疗地处理受感染的患者,并延迟靶病毒开始复制的细胞中的病毒复制。
本领域技术人员可易于确定对所用组合物的确切制剂的合适的给药剂量、方案、和方法,以达到对具体患者的期望的“有效水平”。通过对合适的患者样品(如血液和/或组织)的直接分析(如分析化学分析)或间接分析(如病毒感染的替代指征),本领域技术人员可易于确定并使用本发明化合物的“有效水平”的合适指征。
用于治疗处理病毒感染时,本发明的预防或治疗药物组合物可包含其它药物,结合根据本发明的载体。除了以上所述的以外,这些附加药物的进一步示范例子可包括抗病毒化合物、免疫调节剂、免疫刺激剂、抗生素、和其它能用于治疗病毒感染的药剂和治疗方案(包括识别为替代药物的)。免疫调节剂和免疫刺激剂包括但不限于各种白介素、CD4、细胞因子、抗体制品、输血、和输细胞。
药用组合物
本发明涉及上述诱导RNAi的实体用于预防和治疗处理病毒感染,如下所述。因此,本发明的药剂可并入适于给药的药物组合物。这种组合物通常包括该药剂和药学可接受的载体。
本发明的药物组合物配制为与其预期的给药途径相容。给药途径的例子包括口服、吸入、鼻内、非胃肠(如静脉内、皮内、皮下、腹膜内和肌内)、经皮(局部)、和跨粘膜给药。用于非胃肠、皮内或皮下应用的溶液或悬浮液可包含以下成分:无菌稀释剂如用于注射的水、盐水溶液、不挥发油、聚乙二醇、甘油、丙二醇或其它合成溶剂;抗菌剂如苯甲醇或对羟基苯甲酸甲酯;抗氧化剂如抗坏血酸或亚硫酸氢钠;螯合剂如乙二胺四乙酸(EDTA);缓冲剂如乙酸盐、柠檬酸盐或磷酸盐,以及调节涨度的剂如氯化钠或葡萄糖。可用酸或碱来调节pH,如盐酸或氢氧化钠。非胃肠制剂可封闭于安瓿、一次性注射器或玻璃或塑料制的多剂量小瓶中。
适于注射的药物组合物包括无菌水溶液(当可水溶时)或用于临时制备无菌可注射溶液或分散剂的分散剂和无菌粉末。对静脉内注射,合适的载体包括生理盐水、抑菌水、Cremophor ELTM(BASF,Parsippany,N.J.)或磷酸缓冲盐(PBS)。在所有情况下,组合物必须是无菌的并流动到容易注射的程度。它在制备和贮藏条件下必须是稳定的,并被保存而不受微生物如细菌和真菌的污染作用。载体可为溶剂或分散介质,其含有例如水、乙醇、聚醇(如甘油、丙二醇、和液态聚乙二醇等)、及合适的混合物。可通过如使用包衣(如卵磷脂),通过维持分散情况下期望的粒径尺寸和使用表面活性剂而维持合适的流动性。通过各种抗菌剂和抗真菌剂(如对羟基苯甲酸酯、氯丁醇、苯酚、抗坏血酸、硫柳汞等)而达到防止微生物的作用。在许多情况下,优选的是组合物中包括等渗剂(如蔗糖、聚醇如甘露醇和山梨醇、氯化钠)。注射组合物的延长吸收可通过在组合物中包括一种延迟吸收的剂(如单硬脂酸铝和明胶)而达到。
通过将在合适溶剂中的需要量的活性化合物如所需地与以上所列的一种成分或其组合合并,然后过滤灭菌而制备无菌注射溶液。通常,将活性化合物并入含有碱性分散介质的无菌载体和以上所列的所需其它成分,从而制备分散液。在用于制备无菌注射溶液的无菌粉末的情况,制备的优选方法是真空干燥和冻干,其产生活性成分的粉末,并带有来自以上无菌过滤溶液的任何其它期望成分。
吸入给药是指诱导RNAi的实体经由鼻或嘴吸入而直接进入呼吸系统并进入肺。该实体是以裸露形式或伴有递送剂。在一些实施方案中,RNAi诱导剂以有效量给药以治疗或预防影响呼吸系统的疾病,如呼吸道病毒感染,并导致血液中的吸收最小,从而使得RNAi诱导剂的系统递送最少。尤其是,本发明提供了含有诱导RNAi的实体的干粉组合物,其优选以气雾化喷雾的形式递送,该喷雾来自含有合适喷射剂如二氧化碳等气体的加压容器或分散器或喷雾器。在一些实施方案中,该递送系统适于递送组合物进入患者(如动物或人类)的主要气道(气管和支气管)和/或更深地进入肺(细支气管和/或肺泡)。本发明还包括使用鼻喷雾递送包含诱导RNAi的实体的组合物。根据本发明的一些实施方案,促进核酸被呼吸系统中细胞摄取的递送剂也包括在药物组合物中。然而,本发明还发现没有特异性递送剂时,当RNAi诱导剂经由呼吸道被递送至呼吸系统时,其可有效抑制流感病毒。例如,RNAi诱导剂可以组合物递送至肺,该组合物实质上由干燥形式(如干粉)的RNAi诱导剂组成,或在水性介质中,该水性介质实质上由水,任选地还包括盐(如NaCl、磷酸盐)、缓冲剂、和/或醇,如作为裸的siRNA或shRNA。
本发明还提供了由肺循环系统循环地递送诱导RNAi的实体的方式。对呼吸道疾病优选的是对循环的转移最少。
口服组合物通常包括惰性稀释剂或可食用的载体。它们可封闭于明胶胶囊或压制为片剂。为了口服治疗给药,活性化合物可并入赋形剂并以片剂、锭剂、或胶囊的形式使用。口服组合物还可使用液态载体而制备用作漱口水,其中液态载体中的该化合物口服应用并漱口,然后吐出或咽下。药学相容的结合剂和/或佐剂可包括在组合物中。片剂、药丸、胶囊、锭剂等可含有以下任何成分或类似特性的化合物:结合剂如微晶纤维素、西黄蓍胶或明胶;赋形剂如淀粉或乳糖、崩解剂如藻酸、Primogel、或玉米淀粉;润滑剂如硬脂酸镁或Sterotes;助流剂如胶体二氧化硅;甜味剂如蔗糖或糖精;或调味剂如薄荷、水杨酸甲酯或橙味料。
系统给药还可以经由跨粘膜或经皮方式。对跨粘膜或经皮给药,对待渗透的屏障合适的渗透剂用于制剂中。这样的渗透剂通常是本领域已知的,并包括例如用于跨粘膜给药的去垢剂、胆盐、和夫西地酸衍生物。跨粘膜给药可通过使用鼻喷雾或栓剂而实现。对经皮给药,如本领域一般所知的,活性化合物可配制为软膏剂、油膏、凝胶、或乳剂。
在一个实施方案中,活性化合物与防止该化合物从机体快速排出的载体一起配制,如控释制剂,包括植入和微囊递送系统。可使用生物可降解的、生物相容的聚合物,如乙烯乙酸乙烯酯、聚酐、聚乙醇酸、胶原、多正酯、和聚乳酸。制备这种制剂的方法对本领域技术人员是显而易见的。材料可购自Alza Corporation和Nova Pharmaceuticals,Inc.脂质体悬浮液(包括靶向于受感染细胞并带有对病毒抗原的单克隆抗体的脂质体)也可用作药学可接受的载体。这些可根据本领域技术人员已知的方法制备,如描述于美国专利No.4,522,811。
尤其有利的是配制吸入、口服或非胃肠组合物于剂量单位形式,以便于给药和剂量的均匀。剂量单位形式是指物理上离散的单位,适于作为用于待处理患者的单位剂量;每个单位含有预先确定量的活性化合物,计算该量以联合所需的药物载体产生期望的治疗效果。用于本发明的剂量单位形式的规格由以下因素确定并直接取决于以下因素:活性化合物的独特特征和要达到的特定治疗效果,以及对治疗个体的这种活性化合物配制领域中固有的限制。
这种化合物的毒性和治疗效力可通过细胞培养物或实验动物中的标准药物步骤来确定,例如确定LD50(半数致死剂量)和ED50(半数治疗有效剂量)。毒性剂量和治疗效力剂量之比是治疗指数,可表示为LD50/ED50。表现大治疗指数的化合物是优选的。尽管可使用表现毒副作用的化合物,但应注意设计靶向这种化合物于受感染组织部位的递送系统,从而使对未感染细胞的可能伤害最小,进而减少副作用。
从细胞培养试验和动物研究获得的数据可用于确定用于人类的剂量范围。这种化合物的剂量优选地在包括ED50并几乎没有或没有毒性的循环浓度范围内。根据所采用的剂型和给药途径,剂量可在此范围内变化。对用于本发明方法的任何化合物,可从细胞培养物或非人类动物试验开始预测治疗有效的剂量。可在动物模型中确定如下剂量:达到包括在细胞培养物中确定的EC50(即,测试化合物达到半最大反应的浓度)的循环血药浓度范围。此信息可用于更准确地确定人类中的有用剂量。可通过例如高效液相色谱法测量血浆中的浓度。
药物组合物可包含在容器、包装、或分配器中,并伴有指导给药的说明。
实施例
实施例1:病毒核蛋白的鉴定
认为高度保守位点是存在于大多数可得的人类流感序列中的位点或序列。变体被识别为人类流感分离物中的19-mer序列,类似于保守的19-mer序列,但仅一个或几个核苷酸改变。这是重要的,因为使用siRNA双链体,RISC(RNA诱导的沉默复合体)仍能起始RNAi活性,siRNA双链体的引导链(反义链)大量互补于靶mRNA序列,但相对于精确互补具有一个或几个核苷酸变化。
组成流感病毒基因组的有八个不同的RNA片段。对每个病毒片段分别进行所有分析。因此,例如仅使用片段#1获得的序列对病毒片段#1进行保守位点的研究。
从流感序列数据库获得八个病毒片段的每一个的甲型流感病毒序列(Macken,C.,Lu,H.,Goodman,J.,& Boykin,L.,“The value of a database insurveillance and vaccine selection.”In Options for the Control of Influenza IV.A.D.M.E.Osterhaus,N.Cox&A.W.Hampson(Eds.)Amsterdam:ElsevierScience,2001,103-106)。筛选列表以除去所有全长序列(带有标签“Complete Cds”的,或具有Complete Cds基因长度>95%的),从而不会由于序列平截而不能发现所给靶序列中19-mer片段匹配。进一步筛选序列以消除实验株(除了PR8和WNV,因为测试中用到这些株),因为实验株很可能具有大量人工诱导的突变;这导致从每种病毒片段中除去2-11序列。最终根据GenBank核苷酸序列数据库(http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide)反复核对这些序列以确保所有序列都是当前的。表1列出了符合以上标准并用于随后分析的人类流感序列的Genbank登记号。
表1-1用于该分析的PB2序列(片段1)的Genebank登记号
CY007474,CY002815,CY003391,CY003711,CY002687,CY006202,CY002695,CY002711,CY003383,
CY006674,CY008531,CY002991,CY006434,CY002543,CY003303,CY009003,CY003695,CY006922,
CY002631,CY002535,CY003311,CY006682,CY002575,CY003407,CY003007,CY003399,CY003479,
CY003487,CY006178,CY006370,CY002807,CY006362,CY002703,CY003015,CY003471,CY003031,
CY003295,CY003319,CY663335,CY003840,CY009243,CY001959,CY002679,CY002399,CY006426,
CY006882,CY003023,CY008155,CY002407,CY002623,CY003327,CY006786,CY009179,CY009187,
CY009195,CY009203,CY009211,CY009227,CY009235,CY002655,CY002647,AF258525,AF258524,
DQ249263,AF398866,CY009323,AJ564805,X15283,M38277,CY009291,CY009299,CY008995,CY009371,
CY009347,CY009339,X99035,AF389115,NC_C02023,J02179,DQ208309,CY002359,CY002639,CY003679,
CY002159,CY003703,CY003768,CY006194,CY006418,CY002671,CY006402,CY006410,CY006874,
CY002999,CY006394,CY002367,CY002663,CY006114,CY006754,CY003776,CY003375,CY001687,
AB126635,AB126626,M73524,AY209951,AY209947,AY209948,AY209949,AY209950,AY209945,AY209946,
M91713,AY209942,AY209943,AY2944,AY209941,AY209940,AY209939,M23970,AY209938,AY209937,
AY209936,M81587,M73521,M81575,M81581,AY209934,AY209935,CY002015,CY002079,CY002191,
CY002207,CY002455,CY003647,CY002007,CY002063,CY002463,CY002471,CY006083,CY006091,
CY002495,CY003655,CY006298,CY002271,CY002023,CY002487,CY002727,CY003055,CY002247,
CY002783,CY007802,CY007810,CY007818,CY008347,CY008355,CY008363,CY008371,CY008379,
CY008387,CY008395,CY008403,CY008411,CY008419,CY008427,CY008435,CY008443,CY008451,
CY008563,CY008571,CY008579,CY008587,CY008595,CY008603,CY008611,CY008619,CY008635,
CY008643,CY008651,CY008659,CY009035,CY009043,CY009051,CY006130,CY08627, CY006162,
CY002039,CY002743,CY003063,CY003351,CY006138,CY006154,CY006146,CY002071,CY002199,
CY002921,CY002929,CY002976,CY002983,CY002055,CY002215,CY002231,CY002239,CY002423,
CY002599,CY003039,CY003343,CY006186,CY006378,CY006386,CY000040,CY002255,CY002937,
CY003663,CY002223,CY002961,CY002031,CY000768,CY002945,CY003671,CY006122,CY002953,
CY002969,CY000264,CY002183,CY002263,CY002295,CY008171,CY001036,CY002719,CY002913,
CY003079,CY006099,CY002431,CY002439,CY002447,CY002047,CY008211,CY002799,CY003415,
CY006442,CY007282,CY007290,CY007298,CY007306,CY007314,CY007322,CY007330,CY007346,
CY007354,CY007378,CY007386,CY007394,CY007410,CY007434,CY007442,CY007450,CY007458,
CY007482,CY007490,CY007498,CY007514,CY007538,CY007546,CY007554,CY007562,CY008227,
CY008235,CY008915,CY009259,CY009267,CY009275,CY007650,CY008195,CY000896,CY007338,
CY007506,CY008243,CY007370,CY007586,CY000376,CY002287,CY007362,CY007402,CY007426,
CY007466,CY007522,CY007530,CY007570,CY007578,CY008259,CY007418,CY001236,CY0027791,
CY008251,CY002415,CY002607,CY002615,CY002735,CY002767,CY003047,CY003423,CY008219,
CY008523,CY000568,CY002087,CY002479,CY002511,CY002591,CY002775,CY002351,CY000016,
CY000032,CY000128,CY000136,CY000152,CY000160,CY000176,CY000184,CY000352,CY000384,
CY000519,CY001044,CY001052,CY000956,CY000760,CY001519,CY001719,CY000368,CY000972,
CY000048,CY000064,CY000080,CY000088,CY000104,CY000144,CY000168,CY000255,CY000272,
CY000360,CY000480,CY000512,CY000528,CY000776,CY000784,CY000792,CY000888,CY000916,
CY001095,CY001260,CY001412,CY001543,CY001567,CY001631,CY001639,CY001647,CY001655,
CY002111,CY000096,CY003687,CY000056,CY001028,CY001071,CY001103,CY001060,CY006866,
CY001292,CY006946,CY006930,CY006938,CY006954,CY006962,CY006970,CY006978,CY006986,
CY006994,CY007002,CY007010,CY007018,CY007026,CY007034,CY007050,CY007066,CY007082,
CY007090,CY007098,CY007106,CY007114,CY007122,CY007130,CY007138,CY007146,CY007154,
CY007162,CY007178,CY007186,CY007194,CY007202,CY007218,CY007226,CY007234,CY007250,
CY007266,CY007274,CY008875,CY008883,CY008891,CY008899,CY008907,CY008923,CY009027,
CY009251,CY007258,CY001196,CY008203,CY001380,CY000872,CY000072,CY001119,CY007042,
CY007058,CY007074,CY007210,CY007242,CY007170,CY008547,CY008555,CY000024,CY000200,
CY000908,CY000980,CY001020,CY001212,CY001476,CY001551,CY000880,CY001428,CY000008,
CY000112,CY000964,CY001167,CY001220,CY001228,CY001300,CY001348,CY001468,CY001559,
CY002527,CY000924,CY003135,CY003199,CY003119,CY003151,CY003159,CY003431,CY003784,
CY000232,CY000288,CY000496,CY003103,CY003111,CY003132,CY003143,CY003175,CY003183,
CY003191,CY003207,CY000948,CY000296,CY001735,CY001087,CY001324,CY000120,CY000216,
CY000224,CY000240,CY000248,CY000304,CY000320,CY000336,CY000344,CY000432,CY000440,
CY000448,CY000536,CY000552,CY000560,CY000592,CY000800,CY000940,CY001079,CY001159,
CY001191,CY001244,CY001743,CY001951,CY002135,CY003167,CY003215,CY000424,CY000504,
CY001332,CY001308,CY008323,CY007594,CY007602,CY007610,CY007658,CY007666,CY007674,
CY007682,CY007690,CY007698,CY007706,CY007714,CY007722,CY007730,CY007738,CY007746,
CY007754,CY007762,CY007刀0,CY007778,CY007786,CY007794,CY008291,CY008331,CY008275,
CY008299,CY001444,CY008267,CY001316,CY008283,CY008307,CY008339,CY008315,CY001268,
CY000400,CY000408,CY000416,CY000544,CY000632,CY001111,CY001340,CY001436,CY001135,
CY001204,CY001151,CY000932,CY002823,CY000192,CY000583,CY001175,CY003095,CY003087,
CY000208,CY000280,CY000392,CY000488,CY000576,CY002335,CY000727,CY000312,CY000328,
CY000455,CY003455,CY003463,CY003247,CY003287,CY000616,CY000704,CY000720,CY001004,
CY003832,CY000816,CY003271,CY003279,CY003255,CY003263,CY003816,CY000472,CY000664,
CY000672,CY000712,CY000744,CY000824,CY000840,CY000848,CY000856,CY000988,CY001252,
CY001284,CY001404,CY001527,CY001372,CY003824,CY006666,CY008483,CY008491,CY008507,
CY008763,CY008771,CY008779,CY008787,CY008795,CY008803,CY008811,CY008827,CY008851,
CY008859,CY008867,CY009091,CY009107,CY009123,CY009131,CY009155,CY009163,CY009171,
CY008515,CY008499,CY008755,CY008819,CY008835,CY008843,CY009083,CY009139,CY009147,
CY000696,CY001143,AJ293920,CY001695,CY001879,CY001903,CY001983,CY001999,CY002311,
CY003615,CY003631,CY006067,CY001775,CY001831,CY001847,CY001895,CY001919,CY001991,
CY002303,CY002375,CY003623,CY003639,CY000624,CY000648,CY000736,CY000808,CY001943,
CY003583,CY003591,CY003599,CY001935,CY003231,CY003808,CY003792,CY006906,CY000608,
CY000464,CY000600,CY000680,CY000688,CY000728,CY000832,CY000996,CY001012,CY001127,
CY001583,CY001663,CY001671,CY001751,CY001759,CY001767,CY001783,CY001815,CY001839,
CY001863,CY001871,CY001887,CY001975,CY002119,CY002143,CY002175,CY002319,CY002343,
CY002583,CY001927,CY003239,CY003439,CY003575,CY003607,CY001799,CY002167,CY003223,
CY007642,CY009115,CY006075,CY003800,CY002567,CY001276,CY001703,CY000640,CY000656,
CY000752,CY000864,CY001183,CY001356,CY001420,CY001535,CY001855,CY001911,CY001967,
CY002151,CY001615,CY001711,CY001388,CY001452,CY001460,CY001599,CY001607,CY001623,
CY002519,CY002559,CY001364,CY003447,CY006170,CY003567,CY002391,CY002383,CY001484,
CY001492,CY001500,CY001679,CY001807,CY001823,CY006258,CY006546,CY006290,CY006466,
CY006482,CY006490,CY006498,CY006506,CY006538,CY006554,CY006562,CY006570,CY006578,
CY006586,CY006594,CY006602,CW006610,CY006626,CY006642,CY006778,CY006794,CY006802,
CY006810,CY008187,CY008539,CY008931,CY008947,CY008955,CY008963,CY008971,CY008979,
CY008987,CY006522,CY001791,CY002127,CY001575,CY001511,CY001591,CY002551,AF258841,
AF258842,CY006250,CY006274,CY006266,CY006234,CY006242,CY006282,CY006450,CY006458,
CY006514,CY006530,CY006618,CY006634,CY008939,CY006474,AF037417,AF483602,AF037414,
AF037415,AF037416,CY002279,AF037413,U71133,U71134,U71135,CY006346,CY003759,CY006338,
U71132,CY006354,CY009019,AF037412,CY003719,CY003071,CY008747,M73517,CY003519,CY008731,
CY008739,CY003359,U62543,CY003551,CY002O95,CY002759,CY008723,CY003543,CY003527,CY003511,
CY008459,CY008675,CY008715,CY009075,CY006330,CY008179,CY003751,CY0033727,CY003743,
CY006322,CY006858,CY009059,CY006059,CY006762,CY007634,CY003495,CY006106,CY007626,
CY008475,CY008667,CY006210,CY006898,CY006698,CY006706,CY006714,CY007618,CY006738,
CY006746,CY006770,CY006850,CY006730,CY006842,CY006890,CY008699,CY008707,CY009067,
CY006051,CY003735,CY006914,CY003503,CY006722,CY006826,CY006834,CY003535,CY006818,
CY009011,CY002103,CY003559, M91712, CY002751,CY006314,CY008467,CY008691,CY008683,AY210149,
AY210150,CY002503,CY006226,CY006690,AY210146,AY210147,AY210148,AY210143,AY210144,
AY210145,AJ564804, CY006306,AY210140,AY210141,AY210142,J02140,CY008163,AF348170,AF348171,
CY006218,AY20137,AY210138,AY210139,DQ360837,DQ372598,DQ138181,AY651721,AY651718,
AY651719,AY818126,AB212050,AB212051,AY576380,AY576381,AF2588446,AF036363,AF258837,
AF258838,AF258839,AF258840,AF258843,AF258844,AF258845,AJ404632, AF084261,AF084262,AF084263,
AF115290,AF1115291,AF046093, DQ226172,AF258835,AF258836,AJ404630,AJ404631,AY043030
表1-2用于该分析的PB2序列(片段2)的Genebank登记号
CY007473,CY002542,CY003382,CY002710,CY003390,CY002694,CY002814,CY002686,CY002990,
CY003710,CY008530,CY003694,CY006201,CY006433,CY006921,CY009002,CY003302,CY002630,
CY006673,CY002534,CY003310,CY006681,CY002574,CY006369,CY003478,CY003406,CY003486,
CY002622,CY002702,CY001958,CY003470,CY003030,CY003398,CY002806,CY008154,CY003014,
CY006177,CY006881,CY009242,CY003006,CY003334,CY006361,CY002678,CY003022,CY002398,
CY003839,CY003326,CY006785,CY003318,CY006425,CY002406,CY003294,CY002646,CY002654,
CY009178,CY009186,CY009194,CY009202,CY009210,CY009234,CY009226,AF258526,AF342823,
AF258527,AF398865,CY009322,M25934,AJ564807,M38376,CY009290,CY009298,CY008994,M25932,
CY009370,CY009346,CY009338,X99037,AF389116,NC_002021,J02178,DQ208310,CY002158,CY002638,
CY006193,CY002662,CY002358,CY006393,CY006409,CY006417,CY003702,CY003678, CY006401,
CY006873,CY006753,CY003767,CY002366,CY006113,CY002998,CY002670,CY001686,CY003775,
CY003374,AB126625,AB126634,M25935,AY210025,AY210021,AY210022,AY210023,AY210024,AY210019,
AY210020,AY210016,AY210017,AY210018,AY210015,AY210014,AY210013,M23972,AY210012,AY210011,
AY210010,M25924,M81574,M81580,M81586,AY210008,AY210009,CY002006,CY002014,CY003646,
CY006082,CY006297,CY006090,CY002038,CY002270,CY002462,CY002470,CY003654,CY007801,
CY007809,CY007817,CY008346,CY008354,CY008370,CY008378,CY008386,CY008394,CY008402,
CY008410,CY008418,CY008426,CY0O8434,CY008442,CY008450,CY008562,CY008570,CY008578,
CY008586,CY008602,CY008610,CY008626,CY008650,CY008658,CY009034,CY009042, CY009050,
CY006137,CY008362,CY008594,CY008618,CY008634,CY008642,CY002190,CY002454,CY006129,
CY006153,CY002726,CY006145,CY002022,CY002062,CY002078,CY002486,CY002494,CY002742,
CY002782,CY003062,CY003350,CY006161,CY002206,CY002246,CY003054,CY000039,CY000263,
CY002070,CY002198,CY002238,CY002928,CY002982,CY002214,CY002598,CY002054,CY001035,
CY006377,CY003662,CY006098,CY006385,CY002912,CY002920,CY002952,CY002968,CY002975,
CY002936,CY000767,CY000375,CY002960,CY002718,CY002944,CY003670,CY007465,CY006441,
CY007281,CY007289,CY007297,CY007305,CY007313,CY007321,CY007329,CY007337,CY007345,
CY007353,CY007361,CY007369,CY007377,CY007385,CY007393,CY007401,CY007409,CY007417,
CY007433,CY007441,CY007457,CY007481,CY007489,CY007497,CY007529,CY007537,CY007545,
CY007553,CY007561,CY007649,CY008210,CY008218,CY008226,CY008234,CY008914,CY009258,
CY009266,CY009274,CY001235,CY007425,CY007449,CY007513,CY007569,CY007577,CY007585,
CY008194,CY008242,CY008258,CY002222,CY002230,CY007505,CY007521,CY008250,CY006185,
CY003078,CY006121,CY008170,CY000567,CY000895,CY002182,CY002262,CY002286,CY002294,
CY002422,CY002446,CY002774,CY003038,CY003046,CY003414,CY002086,CY002734,CY002798,
CY008522,CY002254,CY002430,CY002030,CY002046,CY002414,CY002438,CY002478,CY002510,
CY002590,CY002606,CY002614,CY002766,CY003342,CY003422,CY002790,CY000256,CY000007,
CY000015,CY000063,CY000087,CY000103,CY000135,CY000159,CY000167,CY000175,CY000183,
CY000271,CY000367,CY000383,CY000479,CY000511,CY000907,CY001043,CY001051,CY001102,
CY000915,CY000023,CY000031,CY000111,CY000143,CY000151,CY000199,CY000527,CY000759,
CY000783,CY000971,CY001059,CY001070,CY001227,CY001299,CY001411,CY001638,CY001654,
CY002350,CY000359,CY003686,CY000071,CY000047,CY000351,CY000518,CY000791,CY000871,
CY000879,CY001019,CY001118,CY001518,CY001566,CY000095,CY000079,CY007057,CY001027,
CY006865,CY006929,CY006937,CY006945,CY006953,CY006961,CY006969,CY006977,CY006985,
CY006993,CY007001,CY007009,CY007017,CY007025,CY007033,CY007041,CY007049,CY007065,
CY007073,CY007081,CY007089,CY007097,CY007105,CY007113,CY007121,CY007129,CY007137,
CY007145,CY007153,CY007177,CY007185,CY007193,CY007201,CY007209,CY007217,CY007225,
CY007233,CY007241,CY007249,CY007257,CY007265,CY007273,CY008554,CY008874,CY008882,
CY008890,CY008898,CY008906,CY008922,CY009026,CY009250,CY007161,CY007169,CY008202,
CY000887,CY000979,CY001094,CY001291,CY001211,CY001475,CY008546,CY000775,CY000055,
CY000127,CY000923,CY000955,CY000963,CY001166,CY001219,CY001259,CY001347,CY001379,
CY001427,CY001467,CY001550,CY001630,CY001646,CY001718,CY002526,CY001195,CY001558,
CY001542,CY002110,CY000215,CY000223,CY000239,CY000247,CY000439,CY000495,CY000503,
CY000535,CY000947,CY000119,CY000231,CY000343,CY000447,CY000799,CY001086,CY001323,
CY001742,CY003128,CY003134,CY003142,CY003150,CY003158,CY003198,CY003430,CY003110,
CY003102,CY003182,CY003206,CY003783,CY000287,CY003174,CY000295,CY000319,CY000423,
CY000431,CY000543,CY000551,CY000559,CY000591,CY000631,CY001110,CY001150,CY001158,
CY001243,CY001307,CY001339,CY002134,CY000303,CY003166,CY003190,CY003214,CY007721,
CY007593,CY007601,CY007609,CY007673,CY007681,CY007689,CY007697,CY007705,CY007713,
CY007729,CY007737,CY007753,CY007761,CY007769,CY007777,CY007785,CY007793,CY008274,
CY008290,CY008322,CY008330,CY001315,CY008282,CY007657,CY007665,CY007745,CY008266,
CY008306,CY008314,CY008338,CY008298,CY000939,CY003118,CY001435,CY000335,CY000399,
CY000407,CY000415,CY000931,CY001078,CY001134,CY001190,CY001203,CY001267,CY001331,
CY001734,CY001950,CY001443,CY000207,CY000487,CY000582,CY001174,CY002822,CY000327,
CY003094,CY000191,CY000279,CY000391,CY000575,CY001726,CY003086,CY000311,CY002334,
CY000456,CY000471,CY000615,CY000671,CY000719,CY000987,CY001251,CY003246,CY003254,
CY003270,CY003454,CY003462,CY003262,CY003286,CY000663,CY000695,CY000703,CY000711,
CY000743,CY000847,CY001003,CY001283,CY001403,CY000839,CY003815,CY003831,CY006665,
CYO08482,CY008490,CY008498,CY008506,CY008514,CY008762,CY008770,CY008778,CY008786,
CY008794,CY008802,CY008810,CY008826,CY008834,CY008850,CY008858,CY008866,CY009106,
CY009122,CY009130,CY009138,CY009146,CY009154,CY009162,CY000855,CY008754,CY008842,
CY009082,CY009090,CY009170,CY008818,CY003278,CY003823,CY000815,CY000823,CY001142,
CY001371,CY001526,CY000463,CY000599,CY000727,CY002142,CY000647,CY000679,CY000687,
CY001582,CY001662,CY001670,CY001694,CY001750,CY001758,CY001766,CY001774,CY001782,
CY001798,CY001830,CY001846,CY001862,CY001870,CY001878,CY001886,CY001894,CY001902,
CY001918,CY001926,CY001934,CY001974,CY001990,CY001998,CY002166,CY002302,CY003598,
CY003622,CY003230,CY003614,CY006905,CY002582,CY000607,CY000639,CY000655,CY000735,
CY000807,CY000831,CY001126,CY001982,CY002118,CY002318,CY002342,CY003630,CY001942,
CY001011,CY001182,CY001838,CY002310,CY003446,CY003574,CY003606,CY003799,CY003807,
CY006066,CY006074,CY003582,CY003590,CY003791,CY007641,CY009114,CY003222,CY003638,
CY002374,CY001451,CY001459,CY003238,CY003438,CY000623,CY000751,CY000863,CY000995,
CY001275,CY001355,CY001363,CY001387,CY001419,CY001534,CY001598,CY001614,CY001710,
CY001814,CY001854,CY002150,CY002174,CY002518,CY002558,CY002566,CY006169,CY001606,
CY001622,CY001966,CY001702,CY001910,AJ293921,CY001491,CY001499,CY001678,CY001806,
CY001822,CY002382,CY002390,CY003566,CY001590,CY006465,CY005257,CY006289,CY006481,
CY006489,CY006497,CY006505,CY006521,CY006545,CY006553,CY006561,CY006569,CY006577,
CY006585,CY006593,CY006601,CY006609,CY006625,CY006641,CY006777,CY006793,CY006801,
CY006809,CY008186,CY008930,CY008946,CY008954,CY008962,CY008970,CY008978,CY008538,
CY006537,CY008986,CY002550,CY001483,CY001574,CY001790,CY002126,CY001510,AF258822,
AF258823,CY006233,CY006241,CY006249,CY006265,CY006273,CY006281,CY006449,CY006457,
CY006473,CY006513,CY006529,CY006617,CY006633,CY008938,AF037423,AF483601,AF037420,
AF037421,AF037422,CY002278,AF037419,U71129,U71130,U71131,CY006337,CY006345,CY003758,
U71128, CY006353,CY009018,AF037418,CY003718,CY003070,CY008746,M25936,CY003518,CY008730,
CY008738,CY003358,CY003550,CY002094,CY008722,CY002758,CY003510,CY003526,CY003542,
CY008458,CY008674,CY008714,CY009074,CY006329,CY008178,CY003750,CY006857,CY003726,
CY006321,CY003742,CY009058,CY006058,CY006761,CY007633,CY003494,CY006105,CY006209,
CY007625,CY008474,CY008666,CY006897,CY006697,CY006705,CY006713,CY007617,CY006769,
CY006737,CY006745,CY006849,CY006729,CY006841,CY006889,CY008698,CY008706,CY009066,
CY003734,CY006050,CY006913,CY003502,CY006721,CY006825,CY006833,CY009010,CY003534,
CY006817,CY003558,CY002102,CY002750,CY006313,CY008466,CY008690,CY008682,AY2100283,
AY210284,CY006225,CY006689,CY002502,AY210279,AY210280,AY210281,AY210277,AY210278,
AY210282,AJ564806,CY006305,AY210274,AY210275,AY210276,AF348172,AF348173,J02138,CY008162,
CY006217,AY210271,AY210272,AY210273,DQ360838,DQ372597, DQ138163,DQ138164,DQ138165,
AY818129,DQ138159,DQ138160,AY651664,AY651667,AY651665,AY651666,AB212052,AY576392,
AY576393,AF258827,AF036362,AF258818,AF258819,AF258820,AF258821,AF258824,AF258825,AF258826,
AJ404633,AF046094,AF084264,AF084265,AF084266,AF115293,DQ226161,AF258816,AF258817,AJ404634,
AY043029,M74899
表1-3用于该分析的PA序列(片段3)的Genebank登记号
DQ381564,CY007472,CY002541,CY002813,CY003381,CY002629,CY002685,CY002693,CY002709,
CY002989,CY003301,CY003693,CY003709,CY006200,CY006672,CY008529,CY009001,CY006920,
CY006432,CY003389,CY003309,CY002533,CY006680,CY001957,CY002677,CY003477,CY006880,
CY003405,CY003317,CY002573,CY002621,CY002701,CY002805,CY003021,CY003293,CY003325,
CY003333,CY003397,CY003469,CY003485,CY003838,CY006176,CY006368,CY006424,CY006360,
CY003029,CY002397,CY003005,CY003013,CY009241,CY008153,CY006784,CY002405,CY002645,
CY002653,CY009177,CY009185,CY009193,CY009201,CY009209,CY009225,CY09233,AF258519,
AF258518,AF398864,AF398862,CY009321,AJ605762,CY009289,CY009297,CY008993,CY009369,CY009345
CY009337,X99039,AF389117,NC_002022,X17336,DQ208311,CY002157,CY002357,CY002637,CY002365,
CY003677,CY006408,CY006752,CY006416,CY006192,CY006392,CY006872,CY003701,CY006400,
CY003766,CY006112,CY002661,CY002997,CY002669,CY001685,CY003774,CY003373,AB126627,
AB126633,M26079,AY210007,AY210003,AY210004,AY210005,AY210006,AY210001,AY210002,AY209998
AY209999,AY210000,AY209997,AY209996,AY209995,M23974,AY209994,AY209993,AY209992,M26078,
M81573,M81579,M81585,AY209990,AY209991,CY002061, CY002269,CY002469,CY003645,CY02005,
CY002037,CY002461,CY002205,CY003653,CY006081,CY006089,CY006296,CY002725,CY002013,
CY002189,CY002077,CY002741,CY008657,CY002435,CY008649,CY007800,CY008345,CY008353,
CY008361,CY008369,CY008377,CY008385,CY008393,CY008401,CY008417,CY008425,CY008433,
CY008441,CY008449,CY008577,CY008585,CY008633,CY008641,CY009033,CY009041,CY009049,
CY008569,CY008609,CY007808,CY007816,CY008561,CY008593,CY008601,CY008617,CY008625,
CY002453,CY008409,CY006160,CY002493,CY003061,CY002021,CY002245,CY006128,CY003349,
CY006136,CY002781,CY003053,CY006144,CY006152,CY002181,CY002069,CY002197,CY002213,
CY002229,CY002237,CY002261,CY002597,CY002911,CY002919,CY002981,CY002053,CY002429,
CY002974,CY000038,CY000374,CY000766,CY001234,CY002045,CY002253,CY002413,CY002445,
CY002927,CY002951,CY002967,CY003661,CY006184,CY006376,CY006384,CY000262,CY002935,
CY000894,CY002943,CY001034,CY002421,CY002613,CY002959,CY003341,CY003669,CY008913,
CY003037,CY006440,CY007280,CY007296,CY007304,CY007312,CY007320,CY007328,CY007336,
CY007344,CY007352,CY007368,CY007376,CY007384,CY007392,CY007408,CY007432,CY007456,
CY007480,CY007512,CY007544,CY007648,CY008193,CY008225,CY009257,CY009265,CY009273,
CY007416,CY007584,CY008169,CY007424,CY007496,CY008249,CY007360,CY007520,CY002437,
CY002765,CY002029,CY002717,CY007464,CY007488,CY007536,CY007560,CY008241,CY002733,
CY007288,CY007440,CY007448,CY007528,CY007552,CY007568,CY007576,CY008209,CY008217,
CY008233,CY008257,CY006097,CY007400,CY003077,CY007504,CY000566,CY002789,CY002085,
CY002221,CY002285,CY002477,CY002589,CY002605,CY003413,CY003421,CY002293,CY008521,
CY002509,CY002773,CY002797,CY003045,CY006120,CY000030,CY000006,CY000022,CY000350,
CY001093,CY001549,CY001629,CY001645,CY001653,CY002349,CY000078,CY000758,CY001165,
CY000014,CY000046,CY000062,CY000070,CY000086,CY000094,CY000102,CY000126,CY000134,
CY000150,CY000158,CY000166,CY000174,CY000182,CY000198,CY000254,CY000270,CY000358,
CY000366,CY000382,CY000478,CY000510,CY000517,CY000526,CY000782,CY000790,CY000870,
CY000878,CY000906,CY000914,CY000954,CY000970,CY001018,CY001042,CY001050,CY001058,
CY001069,CY001117,CY001218,CY001226,CY001258,CY001290,CY001298,CY001346,CY001378,
CY001410,CY001517,CY001541,CY000110,CY001026,CY000142,CY001565,CY001637,CY000886,
CY001557,CY001717,CY003685,CY001466,CY006952,CY006864,CY006944,CY007200,CY006928,
CY006936,CY006960,CY006968,CY006976,CY006984,CY006992,CY007000,CY007008,CY007016,
CY007024,CY007032,CY007040,CY007048,CY007056,CY007064,CY007072,CY007080,CY007088,
CY007096,CY007104,CY007112,CY007120,CY007128,CY007136,CY007144,CY007152,CY007168,
CY007184,CY007192,CY007216,CY007224,CY007240,CY007264,CY007272,CY008201,CY008553,
CY008873,CY008881,CY008889,CY008897,CY008905,CY008921,CY009025,CY009249,CY007232,
CY007256,CY002525,CY007208,CY007248,CY007160,CY007176,CY000978,CY001210,CY001474,
CY008545,CY002109,CY000054,CY000774,CY000922,CY001101,CY000962,CY001194,CY001426,
CY000238,CY000246,CY000550,CY000798,CY000946,CY001338,CY001733,CY003133,CY003149,
CY003429,CY003782,CY003157,CY003173,CY003197,CY003205,CY000118,CY000214,CY000222,
CY000230,CY000294,CY000302,CY000334,CY000342,CY000422,CY000430,CY000438,CY000446,
CY000494,CY000502,CY000534,CY000558,CY000590,CY000630,CY000938,CY001077,CY001157,
CY001242,CY001306,CY001322,CY001434,CY001741,CY001949,CY002133,CY003101,CY003109,
CY003126,CY003141,CY003189,CY001314,CY003181,CY001133,CY001109,CY001189,CY000318,
CY000542,CY000930,CY001149,CY007592,CY007600,CY007608,CY007656,CY007664,CY007672,
CY007680,CY007688,CY007696,CY007704,CY007744,CY007760,CY007768,CY007776,CY007784,
CY007792,CY008273,CY008289,CY008321,CY007752,CY008329,CY007728,CY008305,CY000414,
CY007720,CY007712,CY007736,CY008337,CYO08265,CY008281,CY001266,CY001330,CY008297,
CY008313,CY000286,CY000398,CY001085,CY000406,CY003213,CY003165,CY001202,CY001442,
CY003117,CY001725,CY000190,CY000278,CY000390,CY000486,CY000574,CY000581,CY002821,
CY003093,CY000326,CY001173,CY003085,CY002333,CY000310,CY000206,CY003261,CY003453,
CY003245,CY000454,CY000470,CY000614,CY000670,CY000694,CY000702,CY000710,CY000718,
CY000742,CY000814,CY000822,CY000846,CY000854,CY000986,CY001002,CY001250,CY001282,
CY001370,CY003285,CY000662,CY003253,CY003269,CY003461,CY000838,CY001525,CY001402,
CY003830,CY008481,CY008801,CY009105,CY009137,CY006664,CY008489,CY008505,CY008513,
CY008785,CY008793,CY008809,CY008849,CY008865,CY009129,CY009145,CY009153,CY009169,
CY008497,CY008769,CY003814,CY008761,CY008753,CY008857,CY009121,CY009161,CY008777,
CY008817,CY008825,CY008833,CY008841,CY009081,CY009089,CY003277,CY003822,CY001141,
CY001773,CY001829,CY001845,CY001861,CY001869,CY001877,CY001885,CY001917,CY001933,
CY001973,CY002117,CY002173,CY003237,CY003613,CY003621,CY001581,CY001925,CY001981,
CY001989,CY001997,CY002141,CY003573,CY003605,CY000462,CY000598,CY000606,CY000622,
CY000646,CY000654,CY000678,CY000686,CY000726,CY000734,CY000806,CY000830,CY000994,
CY001125,CY001181,CY001354,CY001362,CY001458,CY001693,CY001701,CY001709,CY001749,
CY001757,CY001765,CY001781,CY001797,CY001813,CY001837,CY001901,CY001909,CY001941,
CY002165,CY002301,CY002565,CY002581,CY003229,CY003581,CY003589,CY003597,CY003637,
CY006065,CY006073,CY006904,CY000638,CY001893,CY003790,CY002341,CY003629,CY001661,
AJ293922,CY002309,CY001010,CY001274,CY001669,CY007640,CY009113,CY003437,CY002517,
CY003445,CY001853,CY000862,CY000750,CY001533,CY002557,CY002373,CY001597,CY002149,
CY002317,CY001386,CY001418,CY001605,CY001613,CY001621,CY001965,CY003806,CY001450,
CY003798,CY003221,CY006168,CY001805,CY001821,CY002389,CY001498,CY003565,CY001490,
CY001789,CY002381,CY001509,CY001677,CY006288,CY006464,CY008185,CY006256,CY006552,
CY006576,CY006584,CY008945,CY008961,CY006480,CY006488,CY006496,CY006504,CY006520,
CY006536,CY006544,CY006568,CY006592,CY006624,CY006640,CY006776,CY006792,CY006808,
CY008929,CY008953,CY008969,CY008977,CY008985,CY006600,CY006608,CY008537,CY006800,
CY001482,CY006560,CY002125,CY001573,CY001589,CY002549,AF257197,AF257198,CY006264,
CY006472,CY006280,CY006232,CY006248,CY006272,CY006456,CY006528,CY006632,CY008937,
CY006240,CY006448,CY006616,CY006512,AF037429,AF483603,AF037426,AF037427,AF037428,CY002277,
AF037425,U71137,U71138,U71139,CY006344,CY003757,CY006336,U71136,CY006352,CY009017,
AF037424,CY003717,CY008745,CY003069,CY003357,CY003517,CY008729,CY008737,CY003549,
CY002093,CY008721,CY002757,CY003509,CY003525,CY003541,CY009073,CY008673,CY008713,
CY008457,CY006328,CY008177,CY003749,CY003741,CY006856,CY009057,CY003725,CY006320,
CY006057,CY006760,CY007632,CY006104,CY003493,CY006208,CY007624,CY008473,CY008665,
CY006896,CY006696,CY006704,CY006712,CY007616,CY006736,CY006744,CY006768,CY006848,
CY006840,CY008697,CY008705,CY006728,CY006888,CY009065,CY006049,CY003733,CY006912,
CY003501,CY006720,CY006824,CY006832,CY009009,CY003533,CY006816,CY002101,CY002749,
CY003557,CY008681,CY006312,CY008465,CY008689,AY210205,AY210206,CY002501,CY006688,
CY006224,AY210202,AY210203,AY210204,AY210199,AY210200,AY210201,AJ605763,CY006304,
AY210196,AY210197,AY210198,AF348175,J02139,CY008161,AF348174,CY006216,AY210193,AY210194,
AY210195,DQ360839,DQ138184,DQ138185,DQ138186,DQ138187,DQ138188,DQ372596,DQ099791,
DQ099792,AY818132,AY651610,AY651611,AY651613,AY651612,AB212053,AY576404,AY576405,
AF257202,AF257193,AF257194,AF257195,AF257196,AF257199,AF257200,AF257201,AJ289874,AJ291402,
AF046095,AF084267,AF084268,AF084269,AF084270,AF115294,AF115295,AF257191,AF257192,AJ404637,
AY043028
表1-4用于该分析的HA序列(片段4)的Genebank登记号
L20113,U38242,DQ265706,CY007467,CY002624,CY002808,CY002688,CY003384,CY002984,CY002680,
CY003376,CY003704,CY006195,CY006667,CY06915,CY002536,CY003688,CY002704,CY003296,
CY008996,CY006427,CY008524,DQ249260,CY003304,CY002528,CY006675,AY299507,AY297155,
AY297156,AY299497,AY299509,AY299505,AY299495,AY299496,AY299500,AY299502,AY299504,
AY299508,AY299499,AY299498,AY299506,AY297157,AY299501,AY299503,AY297154,AY299494,
AJ457877,AJ517815,AJ457930,AY971011,CY003472,CY006363,CY003833,CY002568,CY002672,CY002392
CY003024,CY001952,CY002616,CY002800,CY003016,CY003288,CY003312,CY003400,CY003464,
CY003480,CY006171,CY006355,CY003320,CY009236,CY008148,CY006419,CY002696,CY006779,
CY006875,CY002400,CY003008,CY003328,CY003392,CY003000,AY682833,AJ517814,AJ457871,AJ457873
AJ457872,AJ457886,AJ457865,AJ457870,AJ457888,AY971009,AJ457867,AJ457866,AJ457863,AJ457869
AJ457881,AY971006,AJ457868,AY971008,AY063229,AY971010,AY063228,CY002640,CY009172,
CY009180,CY009188,CY009196,CY009204,CY009220,CY009228,CY002648,AJ457902,AJ457887,AJ457904,
AJ457862,AY971007,AB043499,AB043498,AY029287,AY029288,AY029289,AY029290,AY029291,
AY029292,AY971004,AY971003,AY289929,AJ344014,AF534030,AF534031,AF534038,AJ457905,AB043496
AB043497,AF268312,AF268313,AF386775,AF386776,AF386777,AF386778,AF386780,AF386781,AF386782,
AF386779,AF387491,AF342821,AJ457885,AJ457892,AJ457894,AJ457898,AB043495,AB043500,AF534025,
AF534026,AF534027,AJ457891,AJ457895,A1457897,AB043494,AY282756,AY282758,AF026153,AF026154,
AF026155,AF026156,AF026157,AF026158,AF026159,AF026160,AJ457906,AJ457896,AB043492,AB043493,
AF131993,AF131994,AF131995,AF386773,AF386774,AY289928,AY289930,AF398878,AJ344022,AF398875,
AJ457907,AJ457899,AJ457900,AB043491,ISDNX127,U53162,U53163,AJ457901,AB043490,AF055426,
AY289927,CY009316,L24362,Z54289,Z54288,AJ57908,AB043489,L19017,L19549,L33480,L33481,L33482
L33743,L33744,L33745,L33746,L33747,L33748,L33749,L33750,L33751,L33758,L33780,L19013,L19018,
L19020,L19022,L19026,L19027,L20106,L20107,L20108,L201 09,L20110,L20111,L201 12,L20116,L20117,
D13573,D13574,AB043488,D31949,L19016,L19028,L33756,Z54287,X59778,L19011,L19014,L19015,
L19019,L19021,L19023,L19024,L19025,L33487,L33752,L33753,L33754,L33755,M33748,AB043487,
L33485,L33486,D00841,X17224,D00406,D00407,L19012,L33483,Z54286,S62154,L33490,L33491,L33492,
L33493,AJ289702,X17221,M59324,M59325,M59326,M59327,M59328,L33489,X00031,X00030,M38353,
X86654,X86655,X86656,X86657,X00028,L33484,L33488,L33757,CY009284,CY09292,X00027,K01331,
CY008988,AB043486,CY009364,AB043485,AB043484,CY009340,AB043483,AB043482,AB043480,
AB3043481,CY009332,AB043479,U02085,AF494249,AF494250,AF494247,AF494248,AF494251,AF494246,
NC_002017,AF389118,J02144,J02176,U08903,U08904,AF117241,AF116575,AF116576,U37727,CY002360,
CY003672,CY003696,CY003761,CY002992,CY002352,CY002632,CY002656,CY002152,CY006107,
CY006387,CY006867,CY02664,CY006187,CY006395,CY006411,CY006403,CY006747,CY00368,
CY003769,CY001680,AB126622,AB126630,AJ457909,AJ457911,AJ457878,AJ457861,AJ457875,AJ457910,
AY684125,AF503473,AF503474,AF503476,AF503477, AF503478,AF503479,AF503480,AF503481,AF503482,
AF503483,AF503485,AF5003486,AF5003484,AF503475,D10163,L19005,L19006,L19008,L11125,L11133,
AY209988,AY209989,AY209978,AY209979,AY209980,AY209981,AY209982,AY209983,AY209984,
AY209985,AY209986,AY209987,AY209974,AY209975,AY209976,AY209977,D13579,D13580,AY209970,
AY209971,AY209972,AY209973,L11126,AY209967,AY209968,AY209969,AY209963,AY209964,AY209965
AY209966,AY209959,AY209960,AY209961,AY209962,AY209955,AY209956,AY209957,AY209958,
AY209954,AF270721,L11134,AF270725,AF270726,AF270727,AF270723,AF270724,AB056699,J02127,
L11142,L20406,L20407,L20408,L20409,L20410,AY643085,AY643087,AY643086,AY209952,AY209953,
AF270716,AF270717,A1270718,AF270719,AF270720,AF270722,AF270728,DQ265709,DQ265716,CY002000
CY002056,CY002184,CY003640,CY006076,CY006084,CY002072,CY002448,CY002456,CY006291,
CY002008,CY002032,CY002200,CY002464,CY003648,CY003344,CY002240,CY002488,CY002736,
CY002264,CY006123,CY003048,CY006139,CY006155,CY008628,CY008652,CY007795,CY007803,
CY007811,CY008340,CY008348,CY008356,CY008372,CY008380,CY008388,CY008396,CY008404,
CY008412,CY008420,CY008428,CY008436,CY008444,CY008564,CY008572,CY008580,CY008636,
CY008644,CY009028,CY009036,CY009044,CY003056,CY008620,CY002776,CY008556,CY008588,
CY008596,CY008604,CY008612,CY006131,CY002480,CY008364,CY006147,CY002720,CY002016,
DQ265707,DQ265708,DQ265710,DQ265711,DQ265712,DQ265713,DQ265714,DQ265715,DQ265717,
CY000257,CY002024,CY002064,CY002192,CY002592,DQ249261,DQ249262,CY000889,CY002040,
CY002176,CY002208,CY002216,CY002224,CY002232,CY002904,CY000033,CY000761,CY001229,
CY002048,CY002416,CY002600,CY006371,CY000369,CY002906,CY002914,CY002922,CY002946,
CY002930,CY006115,CY006179,CY003040,CY003664,CY006379,CY008164,CY002954,CY001029,
CY002408,CY002424,CY003032,CY002712,CY002760,CY002905,CY002938,CY003072,CY003656,
CY008516,CY002432,CY002256,CY002962,CY002248,CY002440,CY002584,CY007283,CY007459,
CY002728,CY002792,CY002288,CY006092,CY007387,CY003416,CY006435,CY007275,CY007291,
CY007299,CY007307,CY007315,CY007323,CY007331,CY007347,CY007371,CY007379,CY007427,
CY007435,CY007443,CY007451,CY007475,CY007483,CY007491,CY007507,CY007531,CY007539,
CY007547,CY007555,CY008188,CY008204,CY008212,CY008220,CY008228,CY008908,CY009252,
CY009260,CY009268,CY007419,CY007563,CY007643,CY008244,CY002280,CY007339,CY007355,
CY007363,CY007403,CY007499,CY007515,CY007571,CY007579,CY008236,CY008252,CY007395,
CY007523,CY007411,CY000561,CY002768,CY002784,CY002080,CY003336,CY002472,CY002504,
CY003408,CY002608,AY947474,AY963789,AY963790,AY963791,AY963792,AY963793,AY945263,
AY945264,AY945265,AY945266,AY945267,AY945268,AY945269,AY945270,AY945271,AY945272,
AY945273,AY945274,AY945275,AY945276,AY945277,AY945278,AY945279,AY945280,AY945281,
AY945282,AY945283,AY945284,AY945285,AY945286,AY945287,AY945288,CY000001,CY000065,
CY000097,CY000137,CY000161,CY000177,CY000265,CY000345,CY000361,CY000901,CY001064,
CY001632,DQ249259,CY000073,CY000089,CY000377,CY001405,CY000009,CY000025,CY000057,
CY000081,CY000121,CY000129,CY000145,CY000153,CY000169,CY000193,CY000353,CY000505,
CY000513,CY000753,CY000777,CY000909,CY000965,CY001013,CY001021,CY001045,CY001112,
CY001213,CY001512,CY000017,DQ089636,CY001285,DQ086160,CY000041,CY000105,CY000249,
CY000473,CY000785,CY000957,CY000973,CY001037,CY001053,CY001061,CY001221,CY002344,
DQ089635,CY000881,CY000949,CY001648,DQ089637,DQ089638,DQ089639,CY003680,CY001088,
CY000873,CY001293,CY007163,DQ086161,CY009020,CY001560,CY007003,CY007083,CY006859,
CY006923,CY006931,CY006939,CY006947,CY006955,CY006963,CY006971,CY006979,CY006987,
CY006995,CY007011,CY007019,CY007035,CY007043,CY007051,CY007059,CY007067,CY007091,
CY007099,CY007107,CY007115,CY007123,CY007131,CY007139,CY007147,CY007155,CY007187,
CY007195,CY007267,CY008876,CY008884,CY008892,CY008900,CY008916,CY009244,CY007179,
CY007235,CY008196,CY008548,CY008868,CY007027,CY001160,CY001421,CY001469,CY001544,
CY001640,CY002104,CY002520,CY007243,CY007075,CY007171,CY007203,CY007211,CY007219,
CY007227,CY007251,CY007259,CY001341,CY001712,CY008540,CY000049,CY000521,CY000865,
CY000917,CY001096,CY001205,CY001253,CY001461,CY001536,CY001552,CY001624,DQ089634,
CY000769,CY001373,DQ086159,AY531033,AY531039,AY531040,AY531041,AY531042,AY531043,
AY531044,AY531045,AY531046,AY531047,AY531048,AY531049,AY531050,AY531051,AY531052,
AY531053,AY531054,AY531055,AY531056,AY531057,AY531058,AY531059,AY531060,AY531061,
DQ059385,DQ086157,DQ086158,AY963783,AY963784,AY963785,AY963786,AY963787,AY963788,
AY963796,CY000113,CY000233,CY000241,CY000585,CY000793,CY000941,CY001080,CY003120,
CY003123,CY003136,CY003200,CY003777,CY000537,CY003104,CY003144,CY000209,CY000217,
CY000225,CY000281,CY000337,CY000425,CY000433,CY000441,CY000489,CY000497,CY000529,
CY001728,CY001736,CY003096,CY003192,CY001317,CY001333,CY003176,CY003112,CY003168,
CY003424,CY003152,CY000933,CY000289,CY000329,CY000545,CY000553,CY001152,CY001197,
CY001325,CY002128,CY003160,CY003184,CY003208,CY001301,CY001072,CY000313,CY001144,
DQ227423,CY007587,CY007595,CY007603,CY007651,CY007659,CY007667,CY007675,CY007683,
CY007691,CY007699,CY007707,CY007715,CY007723,CY007731,CY007739,CY007747,CY007755,
CY007763,CY007771,CY007779,CY007787,CY008284,CY008324,CY008332,CY001309,CY000625,
CY001437,CY008268,CY008276,CY008292,CY001944,CY008260,CY008316,CY000297,CY000393,
CY000401,CY000409,CY000417,CY000925,CY001104,CY001128,CY001184,CY001237,CY001261,
CY001429,CY008308,CY008300,DQ227431,DQ227424,DQ227425,DQ227426,DQ227427,AY589647,
AY589648,AY589649,AY589650,AY589651,AY589652,AY589653,AY589654,AY589655,AY589656,
AY589657,AY589658,AY589659,AY589660,AY589661,DQ227429,AY884276,AY884277,AY884278,
AY884279,AY884280,AY884281,AY884282,AY884283,AY884284,DQ227430,DQ227428,AY661030,
AY661031,AY947476,AY377129,AY968039,AY968037,AY968040,AY968038,AY968041,CY000584,
CY000481,CY000273,CY001168,CY002816,CY003088,CY001720,CY000185,CY000569,CY003080,
CY000385,CY000201,CY000305,CY000321,CY002328,AY661022,AY661023,AY661024,AY968029,
AY968030,AY968031,CY000609,CY003256,CY000465,CY000657,CY000665,CY000705,CY000713,
CY000737,CY000317,CY000849,CY000981,CY001245,CY001520,CY000997,CY001365,CY003240,
CY003448,CY003456,CY003825,CY003264,CY000449,CY000841,CY001277,CY001397,CY003248,
CY003272,CY003280,CY003809,CY003817,CY008844,CY000697,CY008492,CY000833,CY009140,
CY006659,CY008476,CY008484,CY008500,CY008508,CY008764,CY008780,CY008788,CY008796,
CY008804,CY008852,CY008860,CY009100,CY009116,CY009124,CY009132,CY009148,CY009156,
CY009164,CY008748,CY008756,CY008772,CY008820,CY008828,CY008836,CY009084,CY008812,
CY009076,CY000689,CY000809,CY001136,AY661021,AY968024,AY968023,AF382319,AF382320,
AF382321,AF382322,AF382323,AF382324,AF382325,AF382326,AF382327,AF382328,AY035588,AY035589,
AY035590,AY035591,AY035592,CY000593,CY001656,CY001688,CY001752,CY001768,CY001776,
CY001824,CY001832,CY001840,CY001856,CY001864,CY001872,CY001880,CY001888,CY001896,
CY001920,CY001928,CY001976,CY001984,CY002136,CY003608,CY003624,CY000601,CY001760,
CY001912,CY001992,CY002160,CY000457,CY000641,CY000649,CY000681,CY000721,CY000729,
CY000801,CY000825,CY001176,CY001576,CY001904,CY002296,CY002560,CY002576,CY003224,
CY003632,CY003592,CY001968,CY003232,CY000633,CY002168,CY001120,CY001413,CY001792,
CY001936,CY002112,CY002312,CY002336,CY002368,CY001744,CY003568,CY003584,CY003785,
CY003801,CY006060,CY006068,CY003576,CY003440,CY003600,CY000617,CY001453,CY003616,
CY000673,CY006899,CY001848,CY003793,CY001808,CY001005,CY001269,CY007635,CY009108,
CY003432,CY002552,CY000745,CY001664,CY000857,CY000989,CY001349,CY001357,CY001381,
CY001445,CY001528,CY001592,CY001600,CY001608,CY001616,CY002304,CY002512,CY003216,
CY001696,CY006163,CY001704,CY001960,CY002144,AY531035,AJ293926,AY963782,AY963794,
AY963795,AF315566,AF315564,AF315565,AY661019,AY661026,AY968020,AY968019,AY968021,
AB019355,AB019356,AF382318,AY032978,CY001816,CY003560,CY002376,CY001485,CY001493,
CY001784,CY001800,CY002384,CY001584,CY006283,CY008980,CY006515,CY008180,CY006251,
CY006459,CY006475,CY006483,CY006491,CY006499,CY006531,CY006539,CY006547,CY006555,
CY006563,CY006571,CY006579,CY006587,CY006595,CY006603,CY006619,CY006635,CY006771,
CY006787,CY006795,CY008940,CY008948,CY008956,CY008964,CY008972,CY001504,CY002544,
CY006803,CY008532,CY008924,CY002120,CY001672,CY001477,CY001568,AY271794,AF316818,
AF316820,AF316821,AF316819,AF315560,AF315563,AF315571,AF316817,AF15561,AY661206,AY661207,
AY661208,AY661209,AF315559,AF315562,CY006227,CY006243,CY006467,CY006507,CY006451,
CY006235,CY006259,CY006275,CY006443,CY006523,CY006611,CY006627,CY008932,CY006267,
AF363502,AF363503,AF363504,AJ311466,AF315567,AF315569,AF315570,AF315568,AY661201,AY661202,
AY661203,AY661205,AY661210,AF017272,AY661193,AY661194,AY661195,AY661197,AY661198,
AY661199,AY661200,AF131996,AF131997,AF131998,AF017270,AF017271,AB019354,AB019357,
CY002272,AF534013,AF534014,AF534015,AF534016,AF534017,AF534018,AY661181,AY661182,AY661183,
AY661185,AY661186,AY661187,AY661188,AY661189,AY661190,AY661191,AY661192,AY661196,U48444,
U48445,U48447,U65553,U65554,U65555,U65556,U65557,U65558,U65559,U65560,CY006331,CY006339,
CY003752,AY661020,AY661176,AY661175,AY661177,AY661178,AY661179,AY661204,AY661180,Z4403,
Z46404,Z46405,Z46407,Z46408,AB043708,U48439,U48440,U48441,U48442,U48443,U48446,U65552,
CY006347,CY009012,AY661131,AY661132,AY661133,AY661139,AY661140,AY661141,AY661142,
AY661143,AY661144,AY661145,AY661146,AY661147,AY661148,AY661149,AY661150,AY661151,
AY661152,AY661153,AY661154,AY661155,AY661156,AY661157,AY661158,AY661159,AY661161,
AY661162,AY661163,AY661165,AY661166,AY661167,AY661168,AY661169,AY661170,AY661171,
AY661172,AY661173,AY661174,AY661211,D30669,D30668,Z46393,Z46394,Z46395,Z46396,Z46397,
Z46398,Z46399,Z46400,Z46401,Z46402,Z46406,Z46411,Z46412,Z46413,Z46414,Z46415,Z46416,Z46417,
AB043707,AY661160,AY661164,CY003712,U26830,AY661080,AY661082,AY661083,AY661084,AY661085,
AY661086,AY661087,AY661088,AY661089,AY661090,AY661091,AY661092,AY661093,AY661094,
AY661095,AY661096,AY661097,AY661108,AY661109,AY661110,A6Y61111,AY661112,AY661113,
AY661114,AY661115,AY661116,AY661117,AY661118,AY661120,AY661121,AY661122,AY661123,
AY661124,AY661126,AY661127,AY661128,AY661129,AY661130,AY661134,AY661135,AY661136,
AY661137,AY661138,D30665,D30664,Z46392,Z46410,AB043706,AY661125,AY661081,D30663,AY661075,
AY661076,AY661077,AY661078,AY661079,AY661098,AY661099,AY661100,AY661101,AY661102,
AY661103,AY661104,AY661105,AY661106,AY661107,AY661119,D30662,AB043705,D49967,CY003064,
CY008740,AY661073,D49966,AY661069,AY661070,AY661072,AY661074,Z46409,D49965,U97740,
AY661059,AY661066,D49961,AY661029,AY661057,AY661058,AY661060,AY661061,AY661062,AY661063,
AY661064,AY661065,AY661067,AY661068,AY661071,X75800,D49962,Z46391,D4963,D49960,D49964,
AJ252129,AJ252131,CY003512,CY008724,CY008732,CY003352,AY61054,AY661055,AY661056,AF204238,
CY003544,M57644,D49959,CY002088,CY002752,CY008716,AY661053,M21648, M57632,CY003520,
CY003536,CY003504,CY008668,CY008708,CY009068,CY008452,AY661049,AY661050,AY661051,
AY661052,AF405211,M57631,CY006323,CY008172,CY003744,CY006851,CY003736,CY006315,CY003720,
CY009052,AY661016,AF201845,AF201846,AF405209,AF405210,AF405207,CY006052,CY006755,U08858,
U08859,U08905,AY661015,AY661025,AY661048,AF233691,CY007627,AY661014,AF201844,AF405206,
M57630,CY006043,CY003488,CY008468,CY006203,CY008660,CY006891,CY007619,AY661046,AY661047,
AF405212,J02092,AF201843,CY006691,CY006699,CY006707,CY007611,X05907,CY006763,CY006731,
CY006739,CY006843,AY661011,AY661012,AY661013,AY661045,AF450246,CY006723,CY006835,
CY006883,CY008692,CY008700,CY009060,AY661006,AY661007,AY661008,AY661010,AY661044,
AY661009,V01086,CY006044,CY003728,AY661043,AY661028,CY006907,CY003496,CY006715,CY006819,
CY006827,AY661042,AY661005,AY661017,AY661018,AY661027,CY003528,CY009004,CY006811,
AY661002,AY661003,AY661004,AF201842,M54895,CY002744,CY002096,CY003552,CY006307,CY008460,
CY008676,CY008684,AY661041,V01089,AY660999,AY661000,AY661001,AF201875,J02132,CY002496,
CY006683,CY006219,AY660996,AY660997,AY660998,AY660995,AY660994,CY006299,AY660992,
AY660993,AY661040,J02135,V01085,V01103,M55059,CY008156,AF348176,AF348177,AF348178,
AF348179,CY006211,AY660991,AY661038,AY661039,AF201874,AB239125,DQ372591,AY555153,
AY555150,AJ867074,AY818135,AY679514,AY651334,AY651335,AY651333,AY651336,AJ715872,
AY720950,AB212054,AY575869,AY575870,AF102676,AF028709,AF046088,AF046096,AF046097,AF046098,
AF036356,AF084279,AF084280,AF084281,AF084532,AF102671,AF102672,AF102673,AF102674,AF102675,
AF102677,AF102678,AF102679,AF102680,AF102681,AF102682,AF028020,DQ226106,AJ404626,AJ404627,
AY043019,AY043015,AY043017,AY043018
表1-5用于该分析的NP序列(片段5)的Genebank登记号
CY007470,CY002811,CY002683,CY002691,CY003379,CY003691,CY003707,CY002707,CY003299,
CY002539,CY002627,CY006430,CY006918,CY008999,CY006198,CY003387,CY006670,CY008527,
CY002987,CY002531,CY006678,CY003307,CY001955,CY002571,CY003403,CY003475,CY006174,
CY003011,CY003395,CY003291,CY002803,CY003836,CY003315,CY003467,CY002675,CY003003,
CY003027,CY006878,CY003483,CY002699,CY003323,CY008151,CY006366,CY009239,CY002395,
CY002403,CY003019,CY006782,CY003331,CY006358,CY002619,CY006422,CY002651,CY002643,
CY009175,CY009183,CY009199,CY009223,CY009231,CY009191,CY009207,AF258516,AF342819,
AF258517,DQ249264,AF398867,L24394,CY009319,Z54292,M63755,M76602,M76610,Z54291,Z54290,
AJ628066,M59329,M59330,M59331,M59332,M59333,M59334,X51972,D00599,D00600,D00603,CY009287,
CY009295,M63754,M76605,M76606,M76604,CY008991,CY009367,M63751,CY009343,D00601,CY009335,
M63750,U02086,M63749,AF389119,M30746,AY744935,CY002355,CY002659,CY0006750,CY003675,
CY006390,CY002363,CY002155,CY006414,CY006406,CY006190,CY002667,CY003699,CY006110,
CY006870,CY003764,CY002995,CY006398,CY002635,CY001683,CY003772,CY003371,AB126624,
AB126632,M63753,AY210103,AY210104,AY210093,AY210094,AY210095,AY210096,AY210097,AY210098,
AY210099, AY210100,AY210101,AY210102,AY210089,AY210090,AY210091,AY210092,AY210085,
AY210086,AY210087,AY210088,AY210082,AY210084,AY210081,AY210083,AY210077, AY210078,
AY210079,AY210080,AY210075,AY210076,M23976,AY210074,AY210072,AY210073,AY210070,AY210071,
M81571,M81577,M81583,M63752,AY210066,AY210067,AY210068,AY210069,CY02003,CY002011,
CY002467,CY006079,CY002059,CY006087,CY003643,CY003651,CY002451,CY002723,CY002459,
CY002019,CY002075,CY002491,CY006294,CY003051,CY002203,CY002267,CY003059,CY006142,
CY002779,CY008359,CY007798,CY007806,CY007814,CY008343,CY008351,CY008367,CY008375,
CY008383,CY008391,CY008399,CY008407,CY008415,CY008423,CY008431,CY008439,CY008447,
CY008567,CY008575,CY008583,CY008591,CY008615,CY008631,CY008639,CY008647,CY008655,
CY009031,CY009039,CY009047,CY002187,CY006150,CY008559,CY008599,CY008607,CY008623,
CY002483,CY006134,CY006126,CY002739,CY006158,CY002035,CY002243,CY003347,CY000036,
CY000372,CY000564,CY000764,CY001032,CY001232,CY002051,CY002067,CY002043,CY002195,
CY002227,CY002595,CY002925,CY002933,CY002949,CY002979,CY000260,CY006382,CY002771,
CY002941,CY002179,CY002235,CY002251,CY002259,CY002611,CY002731,CY002909,CY002715,
CY002763,CY002957,CY002965,CY002972,CY003075,CY006118,CY008167,CY002917,CY000892,
CY002027,CY007446,CY002219,CY003659,CY003667,CY006095,CY006374,CY006438,CY002787,
CY003043,CY003339,CY003411,CY008519,CY002427,CY006182,CY007326,CY008911,CY009255,
CY007454,CY008207,CY008223,CY007374,CY007478,CY007558,CY009263,CY002587,CY007278,
CY007286,CY007294,CY007302,CY007310,CY007334,CY007350,CY007382,CY007390,CY007430,
CY007438,CY007462,CY007486,CY007494,CY007518,CY007534,CY007542,CY007550,CY007582,
CY008215,CY008231,CY002211,CY007318,CY007342,CY007358,CY007366,CY007398,CY007406,
CY007414,CY007502,CY007526,CY007566,CY007574,CY007646,CY008191,CY008239,CY008247,
CY008255,CY009271,CY002435,CY007422,CY002507,CY002411,CY002419,CY003419,CY002795,
CY007510,CY002475,CY002291,CY002443,CY002603,CY003035,CY002283,CY002083,CY000780,
CY000756,CY000004,CY000020,CY000044,CY000060,CY000068,CY000076,CY000084,CY000092,
CY000100,CY000132,CY000148,CY000156,CY000164,CY000172,CY000180,CY000196,CY000268
CY000348,CY000356,CY000364,CY000380,CY000476,CY000508,CY000520,CY000788,CY000904,
CY000912,CY000920,CY000960,CY000968,CY001024,CY001040,CY001048,CY001056,CY001067,
CY001091,CY001099,CY001115,CY001208,CY001216,CY001224,CY001296,CY001408,CY001635,
CY001651,CY002347,CY000028,CY000524,CY001016,CY000012,CY000052,CY000252,CY001192,
CY000108,CY001288,CY001715,CY000140,CY001515,CY001627,CY002523,CY001424,CY003683,
CY007142,CY000124,CY000772,CY001344,CY006862,CY000952,CY008551,CY000976,CY007118,
CY007006,CY007070,CY007102,CY007198,CY006926,CY006934,CY006942,CY006966,CY007022,
CY007054,CY007110,CY007270,CY006958,CY007014,CY007046,CY007062,CY007078,CY007086,
CY007094,CY007126,CY007166,CY007174,CY008543,CY009023,CY006950,CY006974,CY006982,
CY006990,CY006998,CY007134,CY007150,CY007190,CY007262,CY008895,CY008903,CY009247,
CY001563,CY007030,CY007182,CY007206,CY007214,CY007222,CY007230,CY007238,CY007246,
CY007254,CY008199,CY008879,CY008887,CY008919,CY001163,CY001555,CY007158,CY001472,
CY008871,CY002107,CY000868,CY001376,CY000876,CY000884,CY001256,CY001464,CY001539,
CY001547,CY001643,CY007038,CY000116,CY000212,CY000220,CY000228,CY000236,CY000244,
CY000292,CY000300,CY000316,CY000332,CY000340,CY000420,CY000428,CY000436,CY000444,
CY000492,CY000500,CY000532,CY000548,CY000556,CY000588,CY000628,CY000796,CY000944,
CY001083,CY001147,CY001155,CY001320,CY001336,CY001731,CY001739,CY002131,CY003099,
CY003115,CY003124,CY003130,CY003155,CY003203,CY003427,CY003179,CY003195,CY000284,
CY001131,CY001312,CY003107,CY003780,CY001240,CY003187,CY003147,CY003139,CY000540,
CY000396,CY000404,CY000928,CY001075,CY001107,CY001187,CY001200,CY001432,CY003171,
CY001440,CY003163,CY003211,CY007774,CY001947,CY007694,CY001264,CY007742,CY007750,
CY007758,CY007766,CY007590,CY007598,CY007606,CY007654,CY007662,CY007670,CY007678,
CY007686,CY007702,CY007710,CY007718,CY007726,CY007734,CY007782,CY007790,CY008287,
CY008327,CY008263,CY008271,CY008279,CY008303,CY008311,CY008319,CY008335,CY001328,
CY000936,CY001304,CY000412,CY008295,CY001171,CY000188,CY000204,CY000276,CY000324,
CY000388,CY000484,CY000572,CY000579,CY002331,CY002819,CY003091,CY001723,CY003083,
CY000308,CY000452,CY000468,CY000612,CY000660,CY000668,CY000692,CY000700,CY000708,
CY000716,CY000740,CY000836,CY000852,CY001248,CY001400,CY001523,CY000844,CY003459,
CY003259,CY003243,CY000984,CY001000,CY000820,CY000812,CY001280,CY003451,CY003251,
CY003267,CY003275,CY003283,CY003820,CY003828,CY001368,CY003812,CY009167,CY006662,
CY008783,CY008791,CY008799,CY008807,CY008815,CY008855,CY009103,CY009119,CY009127,
CY009135,CY009159,CY008479,CY008487,CY008503,CY008511,CY008823,CY008831,CY008847,
CY008863,CY009087,CY009143,CY009151,CY008495,CY008751,CY008759,CY008767,CY008775,
CY009079,CY008839,CY001139,CY000604,CY001579,CY001763,CY000460,CY000636,CY000644,
CY000652,CY000676,CY000732,CY001123,CY001416,CY001667,CY001691,CY001747,CY001755,
CY001771,CY001811,CY001875,CY001883,CY001891,CY001899,CY001915,CY001923,CY001931,
CY001979,CY001987,CY002163,CY002371,CY003579,CY003595,CY003611,CY003619,AJ458276,
CY000596,CY000724,CY000804,CY002115,CY000684,CY001995,CY002579,AJ293924,CY003571,
CY003627,CY003635,CY003603,CY006071,CY001595,CY001659,CY001699,CY001779,CY001827,
CY001843,CY001859,CY001867,CY002139,CY002339,CY001851,CY000620,CY000828,CY000860,
CY000992,CY002299,CY002315,CY002563,CY006166,CY001352,CY001907,CY001939,CY001971,
CY001272,CY001619,CY003219,CY003435,CY003788,CY003796,CY003804,CY003227,CY003587,
CY003443,CY006063,CY006902,CY002171,CY001707,CY001795,CY001835,CY009111,CY007638,
CY001179,CY002555,CY003235,CY000748,CY001008,CY001603,CY001963,CY002515,CY001456,
CY002147,CY001611,CY001384,CY001360,CY001448,CY002307,CY001531,CY001496,CY001587,
CY001803,CY002379,CY002387,CY003563,AB019359,AB019360,CY001488,CY001507,CY001819,
CY001571,CY001675,CY002123,CY006254,CY006574,CY006774,CY008943,CY006462,CY006494,
CY006550,CY006558,CY006638,CY006286,CY006478,CY006486,CY006502,CY006518,CY006534,
CY006542,CY006566,CY006582,CY006590,CY006598,CY006606,CY006622,CY006798,CY006806,
CY008183,CY008535,CY008927,CY008951,CY008959,CY008967,CY008975,CY008983,CY006790,
CY001787,CY001480,CY002547,AF255748,AF255749,AJ458277,CY006454,CY006614,CY006630,CY008935,
CY006230,CY006238,CY006246,CY006262,CY006270,CY006278,CY006446,CY006470,CY006510,
CY006526,AF038259,AF483604,AF038256,AF038257,AF038258,AB019358,AB019361,CY002275,AF038255,
U71145,U71146,U71147,CY006342,CY003755,CY006334,U71144,AY936880,CY006350,CY009015,
AF038254,CY003715,L07357,CY008743,CY003067,L07356,L07355,L07353,L07354,L07372,L07373,L07374,
L07369,L07370,CY003515,CY003355,CY008727,CY008735,L07368,L07371,L0366,L07367,CY003547,
L07365,CY002091,CY008719,CY002755,CY003523,CY003539,L07364,CY003507, CY008455,CY008671,
CY008711,CY009071,L07362,L07363,CY006326,CY008175,CY003747,M22577,CY00373 9,CY006318,
CY003723,CY006854,CY009055,CY006055,CY006758,CY007630,L07352,L07360,L07361,CY003491,
CY006102,CY008663,CY008471,CY006206,CY006894,CY007622,L07350,L07351,CY006694,CY006702,
CY006710,CY007614,D00602,L07359,CY006742,CY006734,CY006766,CY006846,L07349,CY006726,
CY006838,CY006886,CY008695,CY008703,CY009063,AF072545,CY006047,L07358,CY003731,CY003499,
CY006910,CY006822,CY006718,CY006830,L07346,L07347,CY003531,CY009007,CY006814,CY002099,
D00051,L07345,CY003555,CY002747,CY006310,CY008463,CY008687,CY008679,L07342,L07343,L07344,
AY210234,AY210235,AY210236,AY210237,AY210238,CY006222,CY002499,L07341,CY006686,AY210230,
AY210231,AY210232,AY210233,AY210226,AY210227,AY210228,AY210229,CY006302,AY210221,
AY210222,AY210223,AY210224,AY210225,J02137,CY008159,AF348180,AF348183,CY006214,L07340,
AF348181,AY210207,AY210208,AY210209,AY210210,AY210211,AY210212,AY210213,AY210214,
AY210215,AY210216,AY210217,AY210218,AY210219,AY210220,AF348182,AY93688 1,DQ372594,
DQ360840,DQ099781,DQ099783,DQ099782,DQ099780,DQ099779,DQ099775,AJ867076,AY818138,
DQ099776,AY651498,AY651499,AY651501,AY651500,AB212055,AY575905,AY575906,AF255753,
AF036359,AF255744,AF255745,AF255746,AF255747,AF255750,AF255751,AF255752,AJ289873,AJ291400,
AJ291401,AF028710,AF046092,AF084276,AF084277,AF084278,AF115284,AF115285,DQ226139,AF255742,
AF255743,AJ289872,AJ289871,AY043026
表1-6用于该分析的NA序列(片段6)的Genebank登记号
CY007469,CY002538,CY002626,CY002682,CY002690,CY002706,CY002810,CY002986,CY003298,
CY003378,CY003386,CY003690,CY003706,CY006197,CY006429,CY006669,CY00691 7,CY008526,
CY008998,AJ518100,AJ518101,AY297140,AY297141,AY297142,AY297143,AY297144,AY297145,
AY297146,AY297147,AY297148,AY297149,AY297150,AY297151,AY297152,AY297153,AY310407,
AY310408,AY310409,AY310410,AY310411,AY310412,CY002530,CY003306,CY006677,DQ249254,
DQ249256,DQ249258,AJ518091,CY001954,CY002394,CY002402,CY002570,CY002618,CY002674,
CY002698,CY002802,CY003002,CY003010,CY003018,CY003026,CY003290,CY003314,CY003322,
CY003330,CY003394,CY003402,CY003466,CY003474,CY003482,CY003835,CY006173,CY006357,
CY006365,CY006421,CY006781,CY006877,CY008150,CY009238,AJ518093,AJ518095,CY002642,CY002650,
CY009174,CY009182,CY009190,CY009198,CY009206,CY009222,CY009230,AJ518092,DQ249252,
AF342820,AJ518098,AJ518096,AJ518099,AY904335,AF398868,AF398869,AF398872,AJ518097,AJ518104,
U53166,D31945,CY009318,D31950,D31944,D31948,AJ006954,X15281,AF494254,M38335,CY009286,
CY009294,K02018,M38309,AF250363,M27970,CY008990,CY009366,CY009342,CY009334,AF250357,
AF494253,AY122327,DQ345546,Y14193,AF250365,AF494252,AY122326,AF389120,NC_002018,J02177,
L25815,L25816,L25817,AF250356,CY002154,CY002354,CY002362,CY002634,CY002658,CY002666,
CY002994,CY003674,CY003698,CY003763,CY006109,CY006189,CY006389,CY006397,CY006405,
CY006413,CY006749,CY006869,AB126623,AB126631,AJ457943,AJ489848,AJ489849,AJ489850,AJ489851,
CY001682,CY003370,CY003771,AF503463,AF503464,AF503465,AF503466,AF503467,AF503468,AF503469,
AF503470,AF503471,AF503472,AJ457944,AJ489846,AJ489847,D10164,AB101673,AB124657,AY209932,
AY209933,AY209922,AY209923,AY209924,AY209925,AY209926,AY209927,AY209928,AY209929,
AY209930,AY209931,K01393,AY209918,AY209919,AY209920,AY209921,AY209914,AY209915,AY209916,
AY209917,AB101672,AB124656,AY209912,AY209913,AY209910,AY209911,AY209906,AY209907,
AY209908,AY209909,AY209904,AY209905,AB124655,AY209903,AY209901,AY209902,AY209899,
AY209900,AB101671,AB124653,AB124654,AY209895,AY209896,AY209897,AY209898,AY643088,
AY643089,J02156,L37329,L37330,L37331,CY002002,CY002010,CY002018,CY002034,CY002058,
CY002074,CY002186,CY002202,CY002242,CY002266,CY002450,CY002458,CY002466,CY002482,
CY002490,CY002722,CY002738,CY002778,CY003050,CY003058,CY003346,CY003642,CY003650,
CY006078,CY006086,CY006125,CY006133,CY006141,CY006149,CY006157,CY006293,CY007797,
CY007805,CY007813,CY008342,CY008350,CY008358,CY008366,CY008374,CY008382,CY008390,
CY008398,CY008406,CY008414,CY008422,CY008430,CY008438,CY008446,CY008558,CY008566,
CY008574,CY008582,CY008590,CY008598,CY008606,CY008614,CY008622,CY008630,CY008638,
CY008646,CY008654,CY009030,CY009038,CY009046,CY000035,CY000259,CY000371,CY000563,
CY000763,CY000891,CY001031,CY001231,CY002026,CY002042,CY002050,CY002066,CY002082,
CY002178,CY002194,CY002210,CY002218,CY002226,CY002234,CY002250,CY002258,CY002282,
CY002290,CY002410,CY002418,CY002426,CY002434,CY002442,CY002474,CY002506,CY002586,
CY002594,CY002602,CY002610,CY002714,CY002730,CY002762,CY002770,CY002786,CY002794,
CY002908,CY002916,CY002924,CY002932,CY002940,CY002948,CY002956,CY002964,CY002971,
CY002978,CY003034,CY003042,CY003074,CY003338,CY003410,CY003418,CY003658,CY003666,
CY006094,CY006117,CY006181,CY006373,CY006381,CY006437,CY007277,CY007285,CY007293,
CY007301,CY007309,CY007317,CY007325,CY007333,CY007341,CY007349,CY007357,CY007365,
CY007373,CY007381,CY007389,CY007397,CY007405,CY007413,CY007421,CY007429,CY007437,
CY007445,CY007453,CY007461,CY007477,CY007485,CY007493,CY007501,CY007509,CY007517,
CY007525,CY007533,CY007541,CY007549,CY007557,CY007565,CY007573,CY007581,CY007645,
CY008166,CY008190,CY008206,CY008214,CY008222,CY008230,CY008238,CY008246,CY008254,
CY008518,CY008910,CY009254,CY009262,CY009270,DQ249255,D0249257,AY531006,AY531007,
AY531008,AY531009,AY531010,AY531011,AY531012,AY531013,AY531014,AY531015,AY531016,
AY531017,AY531018,AY531019,AY531020,AY531021,AY531022,AY531023,AY531024,AY531025,
AY531026,AY531027,AY531028,AY531034,CY000003,CY000011,CY000019,CY000027,CY000043,
CY000051,CY000059,CY000067,CY000075,CY000083,CY000091,CY000099,CY000107,CY000123,
CY000131,CY000139,CY000147,CY000155,CY000163,CY000171,CY000179,CY000195,CY000251,
CY000267,CY000347,CY000355,CY000363,CY000379,CY000475,CY000507,CY000515,CY000523,
CY000755,CY000771,CY000779,CY000787,CY000867,CY000875,CY000883,CY000903,CY000911,
CY000919,CY000951,CY000959,CY000967,CY000975,CY001015,CY001023,CY001039,CY001047,
CY001055,CY001063,CY001066,CY001090,CY001098,CY001114,CY001162,CY001207,CY001215,
CY001223,CY001255,CY001287,CY001295,CY001343,CY001375,CY001407,CY001423,CY001463,
CY001471,CY001514,CY001538,CY001546,CY001554,CY001562,CY001626,CY001634,CY001642,
CY001650,CY001714,CY002106,CY002346,CY002522,CY003682,CY006861,CY006925,CY006933,
CY006941,CY006949,CY006957,CY006965,CY006973,CY006981,CY006989,CY006997,CY007005,
CY007013,CY007021,CY007029,CY007037,CY007045,CY007053,CY007061,CY007069,CY007077,
CY007085,CY007093,CY007101,CY007109,CY007117,CY007125,CY007133,CY007141,CY007149,
CY007157,CY007165,CY007173,CY007181,CY007189,CY007197,CY007205,CY007213,CY007221,
CY007229,CY007237,CY007245,CY007253,CY007261,CY007269,CY008198,CY008542,CY008550,
CY008870,CY008878,CY008886,CY008894,CY008902,CY008918,CY009022,CY009246,DQ059384,
DQ090706,DQ090707,DQ090708,DQ090709,DQ090710,DQ091199,AY589662,AY589663,AY589664,
AY589665,AY589666,AY589667,AY589668,AY589669,AY589670,AY589671,AY589672,AY589673,
AY589674,AY589675,AY589676,CY000115,CY000211,CY000219,CY000227,CY000235,CY000243,
CY000283,CY000291,CY000299,CY000315,CY000331,CY000339,CY000395,CY000403,CY000411,
CY000419,CY000427,CY000435,CY000443,CY000491,CY000499,CY000531,CY000539,CY000547,
CY000555,CY000587,CY000627,CY000795,CY000927,CY000935,CY000943,CY001074,CY001082,
CY001106,CY001130,CY001146,CY001154,CY001186,CY001199,CY001239,CY001263,CY001303,
CY001311,CY001319,CY001327,CY001335,CY001431,CY001439,CY001730,CY001738,CY001946,
CY002130,CY003098,CY003106,CY003114,CY003122,CY003129,CY003138,CY003146,CY003154,
CY003162,CY003170,CY003178,CY003186,CY003194,CY003202,CY003210,CY003426,CY003779,
CY007589,CY007597,CY007605,CY007653,CY007661,CY007669,CY007677,CY07685,CY007693,
CY007701,CY007709,CY007717,CY007725,CY007733,CY007741,CY007749,CY007757,CY007765,
CY007773,CY007781,CY007789,CY008262,CY008270,CY008278,CY008286,CY008294,CY008302,
CY008310,CY008318,CY008326,CY008334,DQ227446,U42776,AJ457958,AJ457959,AJ457960,AJ457961,
CY000187,CY000203,CY000275,CY000307,CY000323,CY000387,CY000483,CY000571,CY000578,
CY001170,CY001722,CY002330,CY002818,CY003082,CY003090,DQ249253,AJ307599,AJ307600,AJ307601,
AJ307602,AJ307603,AJ307604,AJ307605,AJ307606,AJ307607,AJ307608,AJ307609,AJ307610,AJ307611,
AJ307612,AJ307613,AJ307614,AJ307615,AJ307616,AJ307617,AJ307618,AJ307619,AJ307620,AJ307621,
AJ307622,AJ307623,AJ307624,AJ307625,AJ307626,AJ307627,AJ307628,AJ307629,AJ457933,AJ457934,
AJ457956,AJ457957,AJ457962,AJ457963,CY000451,CY000467,CY000611,CY000659,CY000667,CY000691,
CY000699,CY000707,CY000715,CY000739,CY000811,CY000819,CY000835,CY000843,CY000851,
CY000983,CY000999,CY001138,CY001247,CY001279,CY001367,CY001399,CY001522,CY003242,
CY003250,CY003258,CY003266,CY003274,CY003282,CY003450,CY003458,CY003811,CY003819,
CY003827,CY006661,CY008478,CY008486,CY008494,CY008502,CY008510,CY008750,CY008758,
CY008766,CY008774,CY008782,CY008790,CY008798,CY008806,CY008814,CY008822,CY008830,
CY008838,CY008846,CY008854,CY008862,CY009078,CY009086,CY009102,CY009118,CY009126,
CY009134,CY009142,CY009150,CY009158,CY009166,AF316808,AF316810,AF382329,AF382330,AF382331,
AF382332,AF386761,AF386762,AF386763,AF386764,AF534001,AJ293923,AJ457931,AJ457935,AJ457936,
AJ457937,AJ457938,AJ457964,AJ457965,AJ457966,AY531036,CY000459,CY000595,CY000603,CY000619,
CY000635,CY000643,CY000651,CY000675,CY000683,CY000723,CY000731,CY000747,CY000803,
CY000827,CY000859,CY000991,CY001007,CY001122,CY001178,CY001271,CY001351,CY001359,
CY001383,CY001415,CY001447,CY001455,CY001530,CY001578,CY001594,CY001602,CY001610,
CY001618,CY001658,CY001666,CY001690,CY001698,CY001706,CY001746,CY001754,CY001762,
CY001770,CY001778,CY001794,CY001810,CY001826,CY001834,CY001842,CY001850,CY001858,
CY001866,CY001874,CY001882,CY001890,CY001898,CY001906,CY001914,CY001922,CY001930,
CY001938,CY001962,CY001970,CY001978,CY001986,CY001994,CY002114,CY002138,CY002146,
CY002162,CY002170,CY002298,CY002306,CY002314,CY002338,CY002370,CY002514,CY002554,
CY002562,CY002578,CY003218,CY003226,CY003234,CY003434,CY003442,CY003570,CY003578,
CY003586,CY003594,CY003602,CY003610,CY003618,CY003626,CY003634,CY003787,CY003795,
CY003803,CY006062,CY006070,CY006165,CY006901,CY007637,CY009110,AF316805,AF316815,
AF316816,AF533730,AF533731,AF533732,AF533733,AF533734,AF533735,AF533736,AF533737,AF533738,
AF533739,AF533740,AF533741,AF533742,AF533743,AF533744,AF533745,AF533746,AF533747,AF533748,
AF533749,AF533750,AJ316063,AJ457932,AJ457939,AJ457940,AJ457941,AY271795,CY001479,C001487,
CY001495,CY001506,CY001570,CY001586,CY001674,CY001786,CY001802,CY001818,CY002122,
CY002378,CY002386,CY002546,CY003562,CY006253,CY006285,CY006461,CY006477,CY006485,
CY006493,CY006501,CY006517,CY006533,CY006541,CY006549,CY006557,CY006565,CY006573,
CY006581,CY006589,CY006597,CY006605,CY006621,CY006637,CY006773,CY006789,CY006797,
CY006805,CY008182,CY008534,CY008926,CY008942,CY008950,CY008958,CY008966,CY008974,
CY008982,AF038264,AF330819,AF533999,AF534000,AJ291403,CY006229,CY006237,CY006245,CY006261,
CY006269,CY006277,CY006445,CY006453,CY006469,CY006509,CY006525,CY006613,CY006629,
CY008934,AF038262,AF038263,AF038265,AF533995,AF533996,AF533997,AF533998,AJ457942,AF038261,
AF533989,AF533990,AF533991,AF533992,AF533993,AF533994,AJ457945,CY002274,U51245,U51246,
U51247,U71141,U71142,U71143,AJ457946,CY003754,CY006333,CY006341,U43422,U43423,U43424,
U43425,U43426,U71140,AF038260,CY006349,CY009014,U42777,U42778,U42779,U42780,U43417,U43418,
U43419,U43420,U43421,CY003714,U42770,U42771,U42772, U42773,U42774,U42775,U43427,U42637,
CY003066,CY008742,U42636, U42635,CY003354,CY0035 14,CY008726,CY008734,U42634,CY003546,
U42633,CY002090,CY002754,CY008718,CY003506,CY003522,CY003538,CY008454,CY008670,CY008710,
CY009070,U42632,CY003746,CY006325,CY008174,CY003722,CY003738,CY006317,CY006853,CY009054,
AB224664,CY006054,CY006757,CY007629,CY003490,CY006101,CY006205,CY006893,CY007621,
CY008470,CY008662,K01150,CY006693,CY006701,CY006709,CY007613,AB124662,AB124663,CY006733,
CY006741,CY006765,CY006845,AB124661,CY006725,CY006837,CY006885,CY008694,CY008702,
CY009062,CY003730,CY006046,CY003498,CY006717,CY006821,CY006829,CY006909,AB124660,
CY003530,CY006813,CY009006,AB124659,AY210132,AY210133,AY210134,AY210135,AY210136,
CY002098,CY002746,CY003554,CY006309,CY008462,CY008678,CY008686,J02168,AB101675,AY210128,
AY210129,AY210130,AY210131,CY002498,CY006221,CY006685,U42631,AY210124,AY210125,AY210126,
AY210127,AY210119,AY210120,AY210121,AY210122,AY210123,CY006301,AB101674,AB124658,
AF348184,AF348185,AF348186,AF348187,AY210105,AY210106,AY210107,AY210108,AY210109,
AY210110,AY210111,AY210112,AY210113,AY210114,AY210115,AY210116,AY210117,AY210118,
CY006213,CY008158,J02136,U42630,AB239126,AY555151,AB212056,AY575881,AF028708,AF036357,
DQ226128,AJ404628,AJ404629,AY043024
表1-7用于该分析的MP序列(片段7)的Genebank登记号
AJ298948,X59240,DQ299489,CY007468,CY002985,CY002537,CY002625,CY002681,CY002705,CY002809,
CY003297,CY003385,CY003689,CY008525,CY003377,CY008997,CY002689,CY003705,CY06196,
CY006668,CY006916,CY006428,DQ249267,CY002529,CY006676,CY003305,CY001953,CY002569,
CY003025,CY003473,CY006780,CY006876,CY002393,CY002401,CY002617,CY002673,CY002697,
CY002801,CY003009,CY003017,CY003289,CY003313,CY003321,CY003465,CY003481,CY003834,
CY006356,CY006364,CY006420,CY008149,CY003329,CY003401,CY003393,CY006172,CY003001,
CY009237,CY002649,CY002641,CY009173,CY009181,CY009189,CY009197,CY009229,CY009205,
CY009221,AF258523,AF342818,AF258522,DQ249265,AF398876,U53168,U53169,CY009317,M63521,
AJ298947,M54941,X53029,CY009285,CY009293,CY008989,CY009365,CY009341,CY009333,X08091,
U02084,AF389121,NC_002016,L25814,L25818,M19374,M23920,X08088,X08089,AY130766,CY002353,
CY002361,CY006388,CY002993,CY002665,CY002657,CY006868,CY002153,CY002633,CY003673,
CY003697,CY003762,CY006188,CY006404,CY006748,CY006396,CY006412,CY006108,CY001681,
CY003770,AB126629,AB126637,CY003369,AF231358,AF231359,M63531,AY210065,AY210055,AY210056,
AY210057,AY210058,AY210059,AY210060,AY210061,AY210062,AY210063,AY210064,AY210051,
AY210052,AY210053,AY210054,AY210047,AY210048,AY210049,AY210050,AY210044,AY210045,
AY210046,AY210041,AY210042,AY210043,AY210037,AY210038,AY210039,AY210040,AY210035,
AY210036,M23978, AY210032,AY210033,AY210034,AY210030,AY210031,M81570, M81576,M81582,
AY210026,AY210027,AY210028,AY210029,X08093,CY002009,CY002033,CY002057,CY002073,CY002185,
CY002201,CY002457,CY002777,CY003049,CY006077,CY006085,CY006132,CY006140,CY006148,
CY006156,CY006292,CY002001,CY002241,CY002449,CY002721,CY003345,CY002017,CY002265,
CY002465,CY002489,CY002737,CY003649,CY003641,CY002481,CY003057,CY006124,CY007796,
CY008405,CY009029,CY007804,CY007812,CY008365,CY008373,CY009045,CY008557,CY008349,
CY008357,CY008605,CY008341,CY008381,CY008389,CY008397,CY008413,CY008421,CY008429,
CY008437,CY008445,CY008573,CY008581,CY008589,CY008597,CY008613,CY008621,CY008629,
CY008637,CY008645,CY009037,CY008565,CY008653,CY002065,CY002081,CY002177,CY002217,
CY002225,CY002233,CY002249,CY002281,CY002409,CY002417,CY002585,CY002601,CY002713,
CY002907,CY002915,CY002931,CY002939,CY002947,CY002955,CY002963,CY002970,CY002977,
CY003041,CY003665,CY006372,DQ249268,CY002425,CY002433,CY002505,CY002729,CY003033,
CY000034,CY000258,CY000370,CY000562,CY000762,CY000890,CY001030,CY001230,CY002025,
CY002041,CY002049,CY002209,CY002257,CY002289,CY002441,CY002473,CY002593,CY002609,
CY002769,CY002923,CY003409,CY003657,CY006180,CY002193,CY002785,CY006116,CY008517,
CY006380,CY008165,CY002761,CY002793,CY003073,CY003337,CY003417,CY007292,CY007388,
CY007508,CY006436,CY007300,CY007308,CY007380,CY007436,CY007444,CY007476,CY007492,
CY007556,CY006093,CY007276,CY007332,CY007348,CY007372,CY007404,CY007452,CY007460,
CY007484,CY007532,CY007548,CY007564,CY007580,CY008205,CY008213,CY009261,CY007364,
CY008221,CY007356,CY007644,CY009253,CY007284,CY007324,CY007412,CY007420,CY007428,
CY007524,CY007540,CY007572,CY008229,CY008245,CY008253,CY008909,CY007316,CY007340,
CY008189,CY009269,CY007500,CY008237,CY007396,CY007516,CY001633,CY003681,DQ098266,
D0098267,CY000194,CY000002,CY000010,CY000018,CY000026,CY000042,CY000050,CY000058,
CY000066,CY000074,CY000082,CY000090,CY000098,CY000106,CY000122,CY000130,CY000138,
CY000146,CY000154,CY000162,CY000170,CYY00178,CY000250,CY000266,CY000346,CY000354,
CY000362,CY000378,CY000474,CY000506,CY000514,CY000522,CY000754,CY000770,CY000778,
CY000786,CY000866,CY000874,CY000882,CY000902,CY000910,CY000950,CY000958,CY000966,
CY000974,CY001014,CY001022,CY001038,CY001046,CY001054,CY001062,CY001065,CY001089,
CY001097,CY001113,CY001161,CY001206,CY001214,CY001222,CY001254,CY001286,CY001294,
CY001374,CY001406,CY001462,CY001470,CY001513,CY001545,CY001553,CY001561,CY001625,
CY001641,CY001649,CY001713,CY002345,CY002521,CY002105,CY001537,DQ098269,DQ100422,
DQ100423,DQ100424,CY001342,CY001422,CY006972,CY006988,CY007036,CY007140,CY007268,
CY000918,CY006924,CY006932,CY006940,CY006956,CY006964,CY006980,CY006996,CY007004,
CY007012,CY007044,CY007052,CY007060,CY007076,CY007084,CY007092,CY007100,CY0007116,
CY007124,CY007132,CY007188,CY006948,CY007020,CY007068,CY007108,CY007148,CY007156,
CY007164,CY007172,CY007180,CY007204,CY007220,CY007228,CY007236,CY007244,CY007252,
CY007260,CY008197,CY009245,CY006860,CY007196,CY008541,CY008549,CY008885,CY008893,
CY008901,CY008917,CY009021,CY008869,CY008877,CY007212,CY007028,CY000234,CY000242,
CY000546,CY000942,CY001334,CY003127,CY003145,CY003153,CY003201,CY003778,CY000538,
CY000554,CY000794,CY001198,CY003121,CY003177,CY003193,CY000114,CY000210,CY000218,
CY000226,CY000282,CY000290,CY000298,CY000314,CY000330,CY000338,CY000394,CY000402,
CY000410,CY000418,CY000426,CY000434,CY000442,CY000490,CY000498,CY000530,CY000626,
CY000926,CY000934,CY001073,CY001081,CY001105,CY001129,CY001145,CY001153,CY001185,
CY001238,CY001302,CY001310,CY001318,CY001326,CY001729,CY001737,CY001945,CY002129,
CY003097,CY003105,CY003161,CY003169,CY003185,CY003425,CY003209,CY001262,CY000586,
CY001438,CY003137,CY007652,CY007764,CY007780,CY001430,CY007588,CY007596,CY007604,
CY007668,CY007676,CY007684,CY007740,CY007748,CY007772,CY007788,CY003113,CY007660,
CY007692,CY007700,CY007708,CY007716,CY007724,CY007732,CY007756,CY008277,CY008301,
CY008269,CY008293,CY008333,CY008261,CY008285,CY008309,CY008317,CY008325,CY002817,
DQ249266,CY000186,CY000202,CY000274,CY000322,CY000386,CY000482,CY000570,CY000577,
CY001169,CY001721,CY002329,CY003081,CY003089,CY000306,CY001398,CY003249,CY003257,
CY003449,CY003457,CY003265,CY003273,CY000450,CY000466,CY000610,CY000658,CY000666,
CY000690,CY000698,CY000706,CY000714,CY000738,CY000810,CY000818,CY000834,CY000842,
CY000850,CY000982,CY000998,CY001246,CY001278,CY001366,CY003810,CY003826,CY003281,
CY006660,CY001137,CY003241,CY001521,CY008501,CY008509,CY009101,CY009149,CY003818,
CY008837,CY008477,CY009085,CY009117,CY009133,CY009141,CY009165,CY008485,CY008749,
CY008757,CY008773,CY008781,CY008789,CY008797,CY008805,CY008813,CY008821,CY008829,
CY008845,CY008853,CY008861,CY009077,CY009125,CY009157,CY008493,CY008765,AJ293925,
AY386765,AF386766,AF386767,AF386768,AF386770,AF386771,AF386772,CY001529,CY001617,CY001665,
CY001809,CY001873,CY001881,CY002297,CY002305,CY002337,CY003433,CY003569,CY003577,
CY003585,CY003609,CY003617,CY006061,CY006900,CY001897,CY001977,CY001985,CY002169,
CY003625,CY003786,CY000458,CY000594,CY000602,CY000618,CY000634,CY000642,CY000650,
CY000674,CY000682,CY000722,CY000730,CY000802,CY000826,CY000858,CY000990,CY001006,
CY001121,CY001177,CY001270,CY001358,CY001382,CY001446,CY001454,CY001577,CY001593,
CY001601,CY001657,CY001689,CY001697,CY001705,CY001745,CY001753,CY001761,CY001769,
CY001777,CY001793,CY001825,CY001841,CY001849,CY001857,CY001865,CY001889,CY001905,
CY001913,CY001921,CY001929,CY001937,CY001961,CY001969,CY001993,CY002113,CY002137,
CY002145,CY002369,CY002553,CY002561,CY002577,CY003593,CY003794,CY003217,CY006069,
CY003601,CY003633,CY000746,CY001414,CY001833,CY002161,CY002313,CY003225,CY003233,
CY003441,CY003802,CY001350,CY006164,CY007636,CY009109,CY001609,AF386769,AJ458305,
CY001801,CY001817,CY002121,CY001478,CY001486,CY001494,CY001569,CY001585,CY001673,
CY001785,CY002377,CY002545,CY002385,CY006252,CY003561,CY006540,CY006788,CY006532,
CY006284,CY006460,CY006572,CY006580,CY008181,CY006604,CY006772,CY006484,CY006492
CY006500,CY006516,CY006548,CY006588,CY006596,CY006636,CY006796,CY006804,CY006556,
CY006564,CY006620,CY008533,CY008925,CY008941,CY008949,CY008957,CY008965,CY008973,
CY008981,CY006476,CY001505,AJ458307,AJ458308,AF255369,AF255370,CY006228,CY006244,CY006276,
CY006452,CY006236,CY006260,CY006468,CY006444,CY006508,CY006524,CY006612,CY006628,
CY008933,CY006268,AF038274,AJ458306,AF038271,AF038272,AF038273,AJ458339,CY002273,U65565,
U65568,U65569,U65570,U65572,U65573,U65574,U65575,U65576,U65577,U65578,CY006340,CY003753,
CY006332,U65563,U65564,U65566,U65567,U65571,CY006348,CY009013,U65561,U65562,CY003713,
CY003065,CY008741,L18995,L18999,AF401293,M63516,CY003513,CY003353,CY008725,CY008733,
CY003545,CY002089,CY002753,CY008717,CY003521,CY003537,CY003505,CY008453,CY009069,
CY008669,CY008709,CY006324,CY003745,CY008173,CY006316,CY006852,CY003721,CY003737,
CY009053,CY006053,U08863,CY006756,AF348912,AF348913,CY007628,CY003489,CY006100,CY006892,
CY007620,CY008469,CY006204,CY008661,K01140,CY006692,CY006700,CY006708,CY007612,CY006732,
CY006740,CY006844,CY006764,CY006724,CY006836,CY006884,CY009061,CY008693,CY008701,
CY006045,CY003729,CY006908, CY0003497,CY006828,CY006716,CY006820,CY009005,CY006812,
CY003529,X08090,X08092,CY002097,CY003553,J02167,CY002745,CY006308,CY008461,CY008685,
CY008677,AY210266,AY210267,AY210268,AY210269,AY210270,CY002497,CY006220,AY210262,
AY210263,AY210264,AY210265,CY006684,AY210258,AY210259,AY210260,AY210261,CY006300,
AY210253,AY210254,AY210255,AY210256,AY210257,CY008157,M63515,AF348188,AF348191,AF348192,
AF348193,AF348195,AF348196,AF348197,CY006212,AF348189,AF348190,AF348194,AY210239,AY210240,
AY210241,AY210242,AY210243,AY210244,AY210245,AY210246,AY210247,AY210248,AY210249,
AY210250,AY210251,AY210252,DQ360841,DQ094271,DQ094272,DQ094273,DQ094274,DQ094275,
DQ372592,DQ094266,DQ094267,AY818144,AY651387,AY651388,AY651389,AY651390,AB212057,
AY575894,AY575893,AF255374,AJ278648,AF036358,AF255365,AF255366,AF255367,AF255368,AF255371,
AF255372,AF255373,AF046090,AF084282,AF084284,AF115286,DQ226095,AF255363,AF255364,AJ278647,
AJ278646
表1-8用于该分析的NS序列(片段8)的Genebank登记号
CY007471,CY002540,CY002628,CY002684,CY002692,CY002708,CY002812,CY002988,CY003300,
CY003380,CY003388,CY003692,CY003708,CY006199,CY006431,CY006671,CY006919,CY008528,
CY009000,CY002532,CY003308,CY006679,DQ249269,CY001956,CY002396,CY002404,CY002572,
CY002620,CY002676,CY002700,CY002804,CY003004,CY003012,CY003020,CY003028,CY003292,
CY003316,CY003324,CY003332,CY003396,CY003404,CY003468,CY003476,CY003484,CY003837,
CY006175,CY006359,CY006367,CY006423,CY006783,CY006879,CY008152,CY009240,CY002644,
CY002652,CY009176,CY009184,CY009192,CY009200,CY009208,CY009224,CY009232,AF258521,
AF342817,AF258520,AF055423,AF055424,AF055425,AF398877,U53170,U53171,AF055422,CY009320,
M57643,M80974,M12593,M12594,AJ298950,X15282,M12595,CY009288,CY009296,K00578,CY008992,
M12592,CY009368,CY009344,X52146,CY009336,K00576,K00577,U02087,M12596,U13682,AF389122,
L25720,M12597,U13683,Z21498,AF333238,CY002156,CY002356,CY002364,CY002636,CY002660,
CY002668,CY002996,CY003676,CY003700,CY003765,CY006111,CY006191,CY006391,CY006399,
CY006407,CY006415,CY006751,CY006871,AB126628,AB126636,AJ519455,CY001684,CY003372,
CY003773,AY210191,AY210192,M12590,AY210182,AY210183,AY210184,AY210185,AY210186,AY210187,
AY210188,AY210189,AY210190,AY210178,AY210179,AY210180,AY210181,AY210174,AY210175,
AY210176,AY210177,AY210171,AY210172,AY210173,AY210168,AY210169,AY210170,AY210164,
AY210165,AY210166,AY210167,AY210162,AY210163,AY210160,AY210161,M23968,AY210158,AY210159,
AY210156,AY210157,AY210151,AY210152,AY210153,AY210154,AY210155,M81572,M81578,M81584,
CY002004,CY002012,CY002020,CY002036,CY002060,CY002076,CY002188,CY002204,CY002244,
CY002268,CY002452,CY002460,CY002468,CY002484,CY002492,CY002724,CY002740,CY002780,
CY003052,CY003060,CY003348,CY003644,CY003652,CY006080,CY006088,CY006127,CY006135,
CY006143,CY006151,CY006159,CY006295,CY007799,CY007807,CY007815,CY008344,CY008352,
CY008360,CY008368,CY008376,CY008384,CY008392,CY008400,CY008408,CY008416,CY008424,
CY008432,CY008440,CY008448,CY008560,CY008568,CY008576,CY008584,CY008592,CY008600,
CY008608,CY008616,CY008624,CY008632,CY008640,CY008648,CY008656,CY009032,CY009040,
CY009048,CY000037,CY000261,CY000373,CY000565,CY000765,CY000893,CY001033,CY001233,
CY002028,CY002044,CY002052,CY002068,CY002084,CY002180,CY002196,CY002212,CY002220,
CY002228,CY002236,CY002252,CY002260,CY002284,CY002292,CY002412,CY002420,CY002428,
CY002436,CY002444,CY002476,CY002508,CY002588,CY002596,CY002604,CY002612,CY002716,
CY002732,CY002764,CY002772,CY002788,CY002796,CY002910,CY002918,CY002926,CY002934,
CY002942,CY002950,CY002958,CY002966,CY002973,CY002980,CY003036,CY003044,CY003076,
CY003340,CY003412,CY003420,CY003660,CY003668,CY006096,CY006119,CY006183,CY006375,
CY006383,CY006439,CY007279,CY007287,CY007295,CY007303,CY007311,CY007319,CY007327,
CY007335,CY007343,CY007351,CY007359,CY007367,CY007375,CY007383,CY007391,CY007399,
CY007407,CY007415,CY007423,CY007431,CY007439,CY007447,CY007455,CY007463,CY007479,
CY007487,CY007495,CY007503,CY007511,CY007519,CY007527,CY007535,CY007543,CY007551,
CY007559,CY007567,CY007575,CY007583,CY007647,CY008168,CY008192,CY008208,CY008216,
CY008224,CY008232,CY008240,CY008248,CY008256,CY008520,CY008912,CY009256,CY009264,
CY009272,CY000005,CY000013,CY000021,CY000029,CY000045,CY000053,CY000061,CY000069,
CY000077,CY000085,CY000093,CY000101,CY000109,CY000125,CY000133,CY000141,CY000149,
CY000157,CY000165,CY000173,CY000181,CY000197,CY000253,CY000269,CY000349,CY000357,
CY000365,CY000381,CY000477,CY000509,CY000516,CY000525,CY000757,CY000773,CY000781,
CY000789,CY000869,CY000877,CY000885,CY000905,CY000913,CY000921,CY000953,CY000961,
CY000969,CY000977,CY001017,CY001025,CY001041,CY001049,CY001057,CY001068,CY001092,
CY001100,CY001116,CY001164,CY001193,CY001209,CY001217,CY001225,CY001257,CY001289,
CY001297,CY001345,CY001377,CY001409,CY001425,CY001465,CY001473,CY001516,CY001540,
CY001548,CY001556,CY001564,CY001628,CY001636,CY001644,CY001652,CY001716,CY002108,
CY002348,CY002524,CY003684,CY006863,CY006927,CY006935,CY006943,CY006951,CY006959,
CY006967,CY006975,CY006983,CY006991,CY006999,CY007007,CY007015,CY007023,CY007031,
CY007039,CY007047,CY007055,CY007063,CY007071,CY007079,CY007087,CY007095,CY007103,
CY007111,CY007119,CY007127,CY007135,CY007143,CY007151,CY007159,CY007167,CY007175,
CY007183,CY007191,CY007199,CY007207,CY007215,CY007223,CY007231,CY007239,CY007247,
CY007255,CY007263,CY007271,CY008200,CY008544,CY008552,CY008872,CY008880,CY008888,
CY008896,CY008904,CY008920,CY009024,CY009248,CY000117,CY000213,CY000221,CY000229,
CY000237,CY000245,CY000285,CY000293,CY000301,CY000317,CY000333,CY000341,CY000397,
CY000405,CY000413,CY000421,CY000429,CY000437,CY000445,CY000493,CY000501,CY000533,
CY000541,CY000549,CY000557,CY000589,CY000629,CY000797,CY000929,CY000937,CY000945,
CY001076,CY001084,CY001108,CY001132,CY001148,CY001156,CY001188,CY001201,CY001241,
CY001265,CY001305,CY001313,CY001321,CY001329,CY001337,CY001433,CY001441,CY001732,
CY001740,CY001948,CY002132,CY003100,CY003108,CY003116,CY003125,CY003131,CY003140,
CY003148,CY003156,CY003164,CY003172,CY003180,CY003188,CY003196,CY003204,CY003212,
CY003428,CY003781,CY007591,CY007599,CY007607,CY007655,CY007663,CY007671,CY007679,
CY007687,CY007695,CY007703,CY007711,CY007719,CY007727,CY007735,CY007743,CY007751,
CY007759,CY007767,CY007775,CY007783,CY007791,CY008264,CY008272,CY008280,CY008288,
CY008296,CY008304,CY008312,CY008320,CY008328,CY008336,DQ249270,CY000189,CY000205,
CY000277,CY000309,CY000325,CY000389,CY000485,CY000573,CY000580,CY001172,CY001724,
CY002332,CY002820,CY003084,CY003092,CY000453,CY000469,CY000613,CY000661,CY000669,
CY000693,CY000701,CY000709,CY000717,CY000741,CY000813,CY000821,CY000837,CY000845,
CY000853,CY000985,CY001001,CY001140,CY001249,CY001281,CY001369,CY001401,CY001524,
CY003244,CY003252,CY003260,CY003268,CY003276,CY003284,CY003452,CY003460,CY003813,
CY003821,CY003829,CY006663,CY008480,CY008488,CY008496,CY008504,CY008512,CY008752,
CY008760,CY008768,CY008776,CY008784,CY008792,CY008800,CY008808,CY008816,CY008824,
CY008832,CY008840,CY008848,CY008856,CY008864,CY009080,CY009088,CY009104,CY009120,
CY009128,CY009136,CY009144,CY009152,CY009160,CY009168,AJ293941,CY000461,CY000597,
CY000605,CY000621,CY000637,CY000645,CY000653,CY000677,CY000685,CY000725,CY000733,
CY000749,CY000805,CY000829,CY000861,CY000993,CY001009,CY001124,CY001180,CY001273,
CY001353,CY001361,CY001385,CY001417,CY001449,CY001457,CY001532,CY001580,CY001596,
CY001604,CY001612,CY001620,CY001660,CY001668,CY001692,CY001700,CY001708,CY001748,
CY001756,CY001764,CY001772,CY001780,CY001796,CY001812,CY001828,CY001836,CY001844,
CY001852,CY001860,CY001868,CY001876,CY001884,CY001892,CY001900,CY001908,CY001916,
CY001924,CY001932,CY001940,CY001964,CY001972,CY001980,CY001988,CY001996,CY002116,
CY002140,CY002148,CY002164,CY002172,CY002300,CY002308,CY002316,CY002340,CY002372,
CY002516,CY002556,CY002564,CY002580,CY003220,CY003228,CY003236,CY003436,CY003444,
CY003572,CY003580,CY003588,CY003596,CY003604,CY003612,CY003620,CY003628,CY003636,
CY003789,CY003797,CY003805,CY006064,CY006072,CY006167,CY006903,CY007639,CY009112,
CY001481,CY001489,CY001497,CY001508,CY001572,CY001588,CY001676,CY001788,CY001804,
CY001820,CY002124,CY002380,CY002388,CY002548,CY003564,CY006255,CY006287,CY006463,
CY006479,CY006487,CY006495,CY006503,CY006519,CY006535,CY006543,CY006551,CY006559,
CY006567,CY006575,CY006583,CY006591,CY006599,CY006607,CY006623,CY006639,CY006775,
CY006791,CY006799,CY006807,CY008184,CY008536,CY008928,CY008944,CY008952,CY008960,
CY008968,CY008976,CY008984,AF038279,AF256182,AF256183,CY006231,CY006239,CY006247,
CY006263,CY006271,CY006279,CY006447,CY006455,CY006471,CY006511,CY006527,CY006615,
CY006631,CY008936,AF038276,AF038277,AF038278,AF038275,CY002276,U65671,U65672,U65673,
U65674,CY003756,CY006335,CY006343,U65670,CY006351,CY009016,D30675,D30676,CY003716,D30667,
D30674,D30673,CY003068,CY008744,D30670,D30672,CY003356,CY003516,CY008728,CY008736,M57642,
CY003548,D30671,M57641,M80975,CY002092,CY002756,CY008720,M57640,CY003508,CY03524,
CY003540,CY008456,CY008672,CY008712,CY009072,M17699,CY003748,CY006327,CY008176,CY003724,
CY003740,CY006319,CY006855,CY009056,CY006056,CY006759,U08862,CY007631,CY003492,CY006103,
CY006207,CY006895,CY007623,CY008472,CY008664,CY006695,CY006703,CY006711,CY007615,
CY006735,CY006743,CY006767,CY006847,K01332,CY006727,CY006839,CY006887,CY008696,CY008704,
CY009064,CY003732,CY006048,CY003500,CY006719,CY006823,CY006831,CY006911,CY003532,
CY006815,CY009008,AY210312,AY210313,AY210314,AY210315,AY210316,CY002100,CY002748,
CY003556,CY006311,CY008464,CY008680,CY008688,V01102,AY210307,AY210309,AY210310,AY210311,
CY002500,CY006223,CY006687,AY210304,AY210305,AY210306,AY210308,AY210299,AY210300,
AY210301,AY210302,AY210303,CY006303,AF348198,AF348199,AF348200,AF348201,AF348202,AF348203,
AF348204,AF348205,AF348206,AY210285,AY210286,AY210287,AY210288,AY210289,AY210290,
AY210291,AY210292,AY210293,AY210294,AY210295,AY210296,AY210297,AY210298,CY006215,
CY008160,DQ360842,DQ372595,AY526747,AY651552,AY651553,AY651554,AY651555,AY818147,
AB212058,AB212059,AY576368,AY576369,AF256188,AF036360,AF046091,AF084285,AF084286,AF084287,AF115288,AF6178,AF256179,AF256180,AF256181,AF256184,AF256185,AF256186,AF256187,AJ404736,DQ226117,AF256177,AJ278649,AJ404735,AY043027
从所研究的每个甲型流感病毒序列选取所有19-mer序列片段,然后列表确定每个序列片段是否作为准确匹配存在于每个甲型流感病毒序列中,从而鉴别高度保守的19-mer序列片段。因此,第一病毒序列含有从位置1伸展至19的19-mer序列片段,另一个从位置2至20,另一个从位置3至21,等等。以同样方式选取第二、第三、和第四病毒序列,直到表(表1)所列的最后一个病毒序列。
随后把序列片段加至序列片段的增加的表中,保持含有各19-mer片段的甲型流感病毒序列的数目的计数。最终,片段频率以含有各特异性19-mer片段的病毒序列的百分比来表达。表2列出了最保守的19-mer序列片段(最低70%)及其发生频率。
表2-1在表1-1所列甲型流感片段1(PB2)序列中以至少70%存在的保守19-mer序列
Seq
ID 序列 百分比 51 AUGAAACGAAAACGGGACU 95.9%
52 GAAAUGGAUGAUGGCAAUG 95.8%
1 GCCAGACAGCGACCAAAAG 99.5% 53 UGGAUGAUGGCAAUGAAAU 95.8%
2 AGCCAGACAGCGACCAAAA 99.5% 54 UGAAAUGGAUGAUGGCAAU 95.8%
3 ACAGCCAGACAGCGACCAA 99.3% 55 GGAUGAUGGCAAUGAAAUA 95.8%
4 GACAGCCAGACAGCGACCA 99.3% 56 UGAAACGAAAACGGGACUC 95.8%
5 CAGACAGCGACCAAAAGAA 99.3% 57 AAAUGGAUGAUGGCAAUGA 95.8%
6 CAGCCAGACAGCGACCAAA 99.3% 58 AUGGAUUGAUGCAAUGAAA 95.7%
7 AGACAGCGACCAAAAGAAU 99.1% 59 AAUGGAUGAUGGCAAUGAA 95.7%
8 CCAGACAGCGACCAAAAGA 99.1% 60 AUGAAAUGGAUGAUGGCAA 95.7%
9 ACAGCGACCAAAAGAAUUC 99.1% 61 GAAACGAAAACGGGACUCU 95.5%
10 UACUUACUGACAGCCAGAC 99.1% 62 AAACGAAAACGGGACUCUA 95.5%
11 CAGCGACCAAAAGAAUUCG 99.1% 63 AACGAAAACGGGACUCUAG 95.4%
12 ACUUACUGACAGCCAGACA 99.1% 64 GAAAACGGGACUCUAGCAU 95.4%
13 CAUACUUACUGACAGCCAG 99.1% 65 ACGAAAACGGGACUCUAGC 95.4%
14 CUUACUGACAGCCAGACAG 99.1% 66 CGAAAACGGGACUCUAGCA 95.4%
15 GACAGCGACCAAAAGAAUU 99.1% 67 AAAACGGGACUCUAGCAUA 95.3%
16 AUACUUACUGACAGCCAGA 99.1% 68 GAAAGGUUAAAACAUGGAA 94.9%
17 ACUGACAGCCAGACAGCGA 99.0% 69 AAAGGUUAAAACAUGGAAC 94.9%
18 GCAUACUUACUGACAGCCA 99.0% 70 AAGGUUAAAACAUGGAACC 94.8%
19 AGCAUACUUACUGACAGCC 99.0% 71 GGUUAAAACAUGGAACCUU 94.8%
20 UGACAGCCAGACAGCGACC 99.0% 72 AGGUUAAAACAUGGAACCU 94.8%
21 UACUGACAGCCAGACAGCG 99.0% 73 CUCGCACUCGCGAGAUACU 94.5%
22 UUACUGACAGCCAGACAGC 99.0% 74 UCUCGCACUCGCGAGAUAC 94.5%
23 CUGACAGCCAGACAGCGAC 99.0% 75 UAAAAGCAGUUAGAGGUGA 94.3%
24 ACUCUAGCAUACUUACUGA 98.9% 76 UCGGAUGGCCAUCAAUUAA 94.2%
25 UAGCAUACUUACUGACAGC 98.7% 77 AGGAUGAAAUGGAUGAUGG 94.0%
26 CUCUAGCAUACUUACUGAC 98.6% 78 GGAUGAAAUGGAUGAUGGC 94.0%
27 CUAGCAUACUUACUGACAG 98.6% 79 UUAGGAUGAAAUGGAUGAU 93.9%
28 UCUAGCAUACUUACUGACA 98.6% 80 AUGGUUGCAUACAUGUUAG 93.9%
29 CAAAAGAAUUCGGAUGGCC 98.6% 81 UAGGAUGAAAUGGAUGAUG 93.9%
30 AAAAGAAUUCGGAUGGCCA 98.6% 82 UGGUUGCAUACAUGUUAGA 93.9%
31 GACCAAAAGAAUUCGGAUG 98.5% 83 CUUAGGAUGAAAUGGAUGA 93.9%
32 CGACCAAAAGAAUUCGGAU 98.5% 84 UUGCAUACAUGUUAGAGAG 93.9%
33 AAAGAAUUCGGAUGGCCAU 98.5% 85 ACUUAGGAUGAAAUGGAUG 93.9%
34 AGCGACCAAAAGAAUUCGG 98.5% 86 GUUGCAUACAUGUUAGAGA 93.8%
35 GCGACCAAAAGAAUUCGGA 98.5% 87 UAAAACAUGGAACCUUUGG 93.8%
36 CCAAAAGAAUUCGGAUGGC 98.5% 88 UUAAAACAUGGAACCUUUG 93.8%
37 ACCAAAAGAAUUCGGAUGG 98.5% 89 GGUUGCAUACAUGUUAGAG 93.8%
38 GAAUUCGGAUGGCCAUCAA 98.4% 90 UGAUGGUUGCAUACAUGUU 93.7%
39 UUCGGAUGGCCAUCAAUUA 98.3% 91 AUGAGAAUACUUGUAAGGG 93.7%
40 AUUCGGAUGGCCAUCAAUU 98.3% 92 UGAGAAUACUUGUAAGGGG 93.7%
41 GACUCUAGCAUACUUACUG 98.3% 93 CACUUAGGAUGAAAUGGAU 93.7%
42 AGAAUUCGGAUGGCCAUCA 98.3% 94 GUUAAAACAUGGAACCUUU 93.7%
43 AAGAAUUCGGAUGGCCAUC 98.3% 95 UUGAUGGUUGCAUACAUGU 93.5%
44 AAUUCGGAUGGCCAUCAAU 98.3% 96 GAUGGUUGCAUACAUGUUA 93.4%
45 GGGACUCUAGCAUACUUAC 98.1% 97 UCACUUAGGAUGAAAUGGA 93.3%
46 ACGGGACUCUAGCAUACUU 98.0% 98 AACAUGGAACCUUUGGCCC 93.1%
47 AAACGGGACUCUAGCAUAC 98.0% 99 AAACAUGGGAACCUUGGCC 93.1%
48 CGGGACUCUAGCAUACUUA 98.0% 100 CAAGCUGUGGAUAUAUGCA 92.9%
49 AACGGGACUCUAGCAUACU 98.0% 101 AAGCUGUGGAUAUAUGCAA 92.9%
50 GGACUCUAGCAUACUUUACU 97.9% 102 AAAACAUGGAACCUUGGGC 92.8%
103 GUAUGAAAACCGAAAAGGG 92.6% 157 ACUCCAGGUGGAGAAGUGA 87.1%
104 UAAUGAAACGAAAACGGGA 92.6% 158 GAUUGCAUGAUAAAAGCAG 87.0%
105 AAUGAAACGAAAACGGGAC 92.6% 159 CCAGGUGGAGAAGUGAGGA 87.0%
106 GAUGAAAUGGAUGAUGGCA 92.3% 160 CAUACAAUGUUAGAGAGGA 87.0%
107 AACAAGCUGUGGAUAUAUG 91.3% 161 GCAUGAUAAAAGCAGUUAG 87.0%
108 GAACAAGCUGUGGAUAUAU 91.3% 162 AUUGCAUGAUAAAAGCAGU 87.0%
109 ACAAGCUGUGGAUAUAUGC 91.2% 163 GCAUACAUGUUAGAGAGAG 87.0%
110 UGUACACUCCAGGUGGAGA 90.0% 164 CUCCAGGUGGAGAAGUGAG 87.0%
111 AUGUACACUCCAGGUGGAG 90.0% 165 CAUGAUAAAAGCAGUUAGA 87.0%
112 AGAACAAGCUGUGGAUAUA 89.8% 166 GUGGAGAAGUGAGGAAUGA 86.9%
113 GAAGAACCAGCUGUGGAUA 89.8% 167 UGCAUGAUAAAAGCAGUUA 86.9%
114 AAGAACAAGCUGUGGAUAU 89.8% 168 CAGGUGGAGAAGUGAGGAA 86.9%
115 UGAUAAAAGCAGUUAGAGG 89.7% 169 GGUGGAGAAGUGAGGAAUG 86.9%
116 AUGAUAAAAGCAGUUAGAG 89.6% 170 UUGCAUGAUAAAAGCAGUU 86.8%
117 ACAUGGUGGAAUAGAAAUG 89.3% 171 AGGUGGAGAAGUGAGGAAU 86.8%
118 CAUGGUGGAAUAGAAAUGG 89.3% 172 UGCAUACAUGUUAGAGAGA 86.7%
119 CGGAUGGCCAUCAAUUAAU 89.1% 173 AAAGAAUAAAAGAACUACG 86.6%
120 GAUAAAAGCAGUUAGAGGU 88.9% 174 GAGAUGUGCCACAGCACAC 86.6%
121 AUAAAAGCAGUUAGAGGUG 88.9% 175 UAAGAGUCAGCAAAAUGGG 86.6%
122 AUAUGGCCAUAAUUAAGAA 88.8% 176 CCAUAUGGCCAUAAAUAAG 86.5%
123 CAUAUGGCCAUAAUUAAGA 88.8% 177 GAUUUCUCCCAGUUGCUGG 86.5%
124 UGGAAAGAAUAAAAGAACU 88.5% 178 AGAUUUCUCCCAGUUGCUG 86.5%
125 UGGUGGAAUAGAAAUGGAC 88.5% 179 AGGAGGUCAGUGAAACACA 86.4%
126 AUGGAAAGAAUAAAAGAAC 88.5% 180 GAGGAGGUCAGUGAAACAC 86.4%
127 GGUGGAAUAGAAAUGGACC 88.4% 181 GAAAGAAUAAAAGAACUAC 86.4%
128 GGAAAGAAUAAAAGAACUA 88.4% 182 AUACAUGUUAGAGAGAGAA 86.2%
129 AUGGUGGAAUAGAAAUGGA 8804% 183 AGGGAUGAGAAUACUUGUA 86.1%
130 AUGGCCAUAAUUAAGAAGU 88.1% 184 UAUGCAAGGCUGCAAUGGG 86.1%
131 UGGCCAUAAUUAAGAAGUA 88.1% 185 GGAUGAGAGUACUUGUAAG 86.1%
132 AGUCUCGCACUCGCGAGAU 88.1% 186 GCACAGAGAUGUCAAUGAG 86.1%
133 GUCUCGCACUCGCGAGAUA 88.1% 187 GAAAAGAACCCGUCACUUA 86.1%
134 UAUUCAACUACAACAAGAC 88.1% 188 AGCACAGAGAUGUCAAUGA 86.1%
135 CAGUCUCGCACUCGCGAGA 88.1% 189 AUAUGCAAGGCUGCAAUGG 86.1%
136 UAUGGCCAUAAUUAAGAAG 88.0% 190 GGGAUGAGAAUACUUGUAA 86.1%
137 GACCAUAUGGCCAUAAUUA 87.8% 191 AAAAGAACCCGUCACUUAG 86.1%
138 UGGACCAUAUGGCCAUAAU 87.7% 192 UCAGGGAUGAGAAUACUUG 86.1%
139 GUAUUCAACUACAACAAGA 87.7% 193 CAGGGAUGAGAAUACUUGU 86.1%
140 GUGGACCAUAUGGCCAUAA 87.7% 194 CCAAGCACAGAGAUGUCAA 86.0%
141 CAUGUUAGAGAGAGAACUU 87.6% 195 CAGGAAAAGAACCCGUCAC 86.0%
142 UACAUGUUAGAGAGAGAAC 87.6% 196 CCACAGUGGACCAUAUGGC 86.0%
143 ACAUGUUAGAGAGAGAACU 87.6% 197 AGGAAAAGAACCCGUCACU 86.%
144 ACCAUAUGGCCAUAAUUAA 87.6% 198 ACCACAGUGGGACCAUAUG 86.0%
145 UGUUAGAGAGAGAACUUGU 87.6% 199 CAGUGGACCAUAUGGCCAU 86.0%
146 AUGUUAGAGAGAGAACUUG 87.6% 200 GAAUACUUGUAAGGGGCAA 86.0%
147 ACACUCCAGGUGGAGAAGU 87.4% 201 AGAUGUGCCACAGCACACA 86.0%
148 AUGUCGCAGUCUCGCACUC 87.4% 202 GGAAAAGAACCCGUCACUU 86.0%
149 GUACACUCCAGGUGGAGAA 87.4% 203 AAGCACAGAGAUGUCAAUG 86.0%
150 UACACUCCAGGUGGAGAAG 87.4% 204 AGAAUACUUGUAAGGGGCA 86.0%
151 UGUCGCAGUCUCGCACUCG 87.4% 205 GGACCAUAUGGCCAUAAUU 86.0%
152 UCGCAGUCUCGCACUCGCG 87.3% 206 ACAGUGGACCAUAUGGCCA 86.0%
153 GUCGCAGUCUCGCACUCGC 87.3% 207 AGUGGACCAUAUGGCCAUA 86.0%
154 GCAGUCUCGCACUCGCGAG 87.2% 208 CAAGCACAGAGAUGUCAAU 86.0%
155 CGCAGUCUCGCACUCGCGA 87.2% 209 GAGAAUACUUGUAAGGGGC 86.0%
156 CACUCCAGGUGGAGAAGUG 87.2% 210 GACAGGAAAAGAACCCGUC 85.9%
211 AUCGAGUGAUGGCAUCACC 85.9% 265 AGGUCAGUGAAACACAGGG 85.3%
212 GCUGUGGAUAUAUGCAAGG 85.9% 266 GGGGAUCAGGGAUGAGAAU 85.3%
213 GGAUAUAUGCAAGGCUGCA 85.9% 267 GAGGUCAGUGAAACACAGG 85.3%
214 UGGAUAAUAUGCAAGCUGC 85.9% 268 UUGUAAGGGGCAAUUCUCC 85.3%
215 AGACAGGAAAAGAACCCGU 85.9% 269 GGGAGACAGGAAAAGAACC 85.3%
216 ACAAAAACCACAGUGGACC 85.9% 270 GGAGACAGGAAAAGAACCC 85.3%
217 UUUGCAGCCGCUCCACCAA 85.9% 271 GGGAUCAGGGAUGAGAAUA 85.3%
218 CUGUGGAUAUAUGCAAGGC 85.9% 272 CUUGUAAGGGGCAAUUCUC 85.3%
219 GUGGAUAUAUGCAAGGCUG 85.9% 273 ACUUGUAAGGGGCAAUUCU 85.3%
220 ACAGGAAAAGAACCCGUCA 85.9% 274 AGAAUCAGCUCAUCCUUCA 85.1%
221 CGAAGAUGUCAAUGAGAGG 85.9% 275 GGUAAUGAAACGAAAACGG 85.1%
222 GAUCGAGUGAUGGUAUCAC 85.9% 276 UGAGGGGAUCAGGGAUGAG 85.1%
223 UAUAUGCAAGGCUGCAAUG 85.9% 277 GUGAGGGGAUCAGGGAUGA 85.1%
224 AUAUAUGCAAGGCUGCAAU 85.9% 278 AUGUGAGGGGAUCAGGGAU 85.1%
225 UCCAGGUGGAGAAGUGAGG 85.9% 279 GAGGGGAUCAGGGAUGAGA 85.1%
226 CAAAAACCACAGUGGACCA 85.9% 280 ACCACCCAGAUAAUAAAGC 85.1%
227 UUGCAGCCGCUCCACCAAA 85.9% 281 AAUGUGAGGGGAUCAGGGA 85.1%
228 UACUCAGAAAAGCAACCAG 85.8% 282 CCACCCAGAUAAUAAAGCU 85.1%
229 AUAAUUAAGAAGUACACAU 85.8% 283 UGUGAGGGGAUCAGGGAUG 85.1%
230 AAAAACCACAGUGGACCAU 85.8% 284 GCUAUACUCAGAAAAGCAA 85.0%
231 AUACUCAGAAAAGCAACCA 85.8% 285 CUAUACUCAGAAAAGCAAC 85.0%
232 GAUAUAUGCAAGGCUGCAA 85.8% 286 GAAUCAGCUCAUCCUUCAG 85.0%
233 AAAACCACAGUGGACCAUA 85.8% 287 CCUGAGGAGGUCAGUGAAA 84.9%
234 AAGAAUAAAAGAACUACGG 85.8% 288 CUGAGGAGGUCAGUGAAAC 84.9%
235 UACAACAAAAUGGAAUUUG 85.8% 289 UAUACUCAGAAAAGCAACC 84.9%
236 ACAACAAAAUGGAAUUUGA 85.8% 290 CAACAGCUAUACUCAGAAA 84.8%
237 AAACCACAGUGGACCAUAU 85.8% 291 AUGGAACCUUUGGCCCUGU 84.8%
238 CACAGUGGACCAUAUGGCC 85.8% 292 GCAACAGCUAUACUCAGAA 8A.8%
239 CACAGAGAUGUCAAUGAGA 85.8% 293 AUAAGAGUCAGCAAAAUGG 84.8%
240 UAAUUAAGAAGUACACAUC 85.8% 294 UGAGGAGGUCAGUGAAACA 84.6%
241 ACAGAGAUGUCAAUGAGAG 85.8% 295 UUUUAAGGCAUUUUCAGAA 84.6%
242 AACCACAGUGGACCAUAUG 85.8% 296 CUCUAUUCCAACAAAUGAG 84.6%
243 AUCAGGGAUGAGAAUACUU 85.7% 297 ACUCUAUUCCAACAAAUGA 84.6%
244 AGAAUAAAAGAACUACGGA 85.7% 298 GAACCCGUCACUUAGGAUG 84.6%
245 AUACUUGUAAGGGGCAAUU 85.7% 299 AAGAACCCGUCACUUAGGA 84.6%
246 GAUCAGGGAUGAGAAUACU 85.7% 300 AGAACCCGUCACUUAGGAU 84.6%
247 AGCUGUGGAUAUAUGCAAG 85.7% 301 AACAGCUAUACUCAGAAAA 84.6%
248 CCAUAAUUAAGAAGUACAC 85.7% 302 AGAUAAUAAAGCUUCUCCC 84.5%
249 UGUGGAUAUAUGCAAGGCU 85.7% 303 CCCAGAUAAUAAAGCUUCU 84.5%
250 UACUUGUAAGGGGCAAUUC 85.7% 304 CAGAUAAUAAAGCUUCUCC 84.5%
251 AAUACUUGUAAGGGGCAAU 85.7% 305 CUUUUAAGGCAUUUUCAGA 84.5%
252 GGAUCAGGGAUGAGAAUAC 85.7% 306 GUAAUUAUGGAAGUUGUUU 84.4%
253 CAUAAUUAAGAAGUACACA 85.7% 307 ACCCAGAUAAUAAAGCUUC 84.4%
254 ACCCGUCACUUAGGAUGAA 85.6% 308 AUGUAAUUAUGGAAGUUGU 84.4%
255 CCGUCACUUAGGAUGAAAU 85.6% 309 CCUGGUCAUGCAGACCUCA 84.4%
256 GUCAUCUAGGAUGAAAUGG 85.6% 310 GAUGUAAUUAUGGAAGUUG 84.4%
257 GCCAUAAUUAACAAGUACA 85.6% 311 UCCUGAGGAGGUCAGUGAA 84.4%
258 CGUCACUUAGGAUGAAAUG 85.6% 312 CUCCUGAGGAGGUCAGUGA 84.4%
259 CCCGUCACUUAGGAUGAAA 85.6% 313 UAAUUAUGGAAGUUGUUUU 84.4%
260 GGCCAUAAUUAAGAAGUAC 85.6% 314 CACCCAGAUAAUAAAGCUU 84.4%
261 AACCCGUCACUUAGGAUGA 85.6% 315 UGGAGAUGUGCCACAGCAC 84.4%
262 UGGUAAUGAAACGAAAACG 85.4% 316 UCUCCUGAGGAGGUCAGUG 84.4%
263 UUGGUAAUGAAACGGAAAC 85.4% 317 ACAGCUAUACUCAGAAAAG 84.4%
264 AGGGGAUCAGGGAUGAGAA 85.3% 318 CCACUAGCAUCUUUAUUGG 84.4%
319 CACUAGCAUCUUUAUUGGA 84.4% 373 CAGCCGCUCCACCAAAGCA 83.5%
320 CUGGUCAUGCAGACCUCAG 84.3% 374 GCAGCCGCUCCACCAAAGC 83.5%
321 CAUGGAACCUUUGGCCCUG 84.3% 375 GGCAUUUUCAGAAAGAUGC 83.4%
322 UGUAAUUAUGGAAGUUGUU 84.3% 376 AGGCAUUUUCAGAAAGAUG 83.4%
323 CAGCUAUACUCAGAAAAGC 84.2% 377 UAAGGCAUUUUCAGAAAGA 83.4%
324 AUUCUCCUGUAUUCAACUA 84.2% 378 ACUUUAAUUGAAGACCCAG 83.4%
325 AAGAACCCGUCACUUUAGG 84.2% 379 AAGGCAUUUUCAGAAAGAU 83.4%
326 UUGGAGAUGUGCCACAGCA 84.2% 380 UUAGGGCAUUUUCAGAAAG 83.4%
327 AAUUCUCCUGUAUUCAACU 84.2% 381 GCAAUCUCCAAACAUUGAA 83.4%
328 ACAUGGAACCUUUGGCCCU 84.1% 382 GCACUUUAAUUGAAGACCC 83.3%
329 GGAGAUGUGCCACAGCACA 84.1% 383 CACUUUAAUUGAAGACCCA 83.3%
330 UCAGAUCGAGUGAUGGUAU 84.1% 384 CUUUAAUUGAAGACCCAGA 83.3%
331 UAUUGGAGAUGUGCCACAG 84.1% 385 GGCACUUUAAUUGAAGACC 83.3%
332 AGAUCGAGUGAUGGUAUCA 84.1% 386 UUUAAGGCAUUUUCAGAAA 83.2%
333 CAGAUCGAGUGAUGGUAUC 84.1% 387 UUUAAUUGAAGACCCAGAU 83.2%
334 CCAGAUAAUAAAGCUUCUC 84.1% 388 UUUGAGAGUUCGAGACCAA 83.2%
335 AUUGGAGAUGUGCCACAGC 84.1% 389 UUUUUGAGAGUUCGAGACC 83.2%
336 AGCUAUACUCAGAAAAGCA 84.0% 390 GCCGCUCCACCAAAGCAAA 83.2%
337 GGCAAUUCUCCUGUAUUCA 84.0% 391 UUUUGAGAGUUCGAGACCA 83.2%
338 CUUUAUUGGAGAUGUGCCA 84.0% 392 AGCCGCUCCACCAAAGCAA 83.2%
339 UUAUUGGAGAUGUGCCACA 84.0% 393 UUAAUUGAAGACCCAGAUG 83.2%
340 UCCAAGCACAGAGAUGUCA 84.0% 394 UGCAGCCGCUCCACCAAAG 83.2%
341 UCUUUAUUGGAGAUGUGCC 84.0% 395 CCGCUCCACCAAAGCAAAG 83.2%
342 GCAAUUCUCCUGUAUUCAA 83.9% 396 UAAUUGAAGACCCAGAUGA 83.0%
343 CUCCAAGCACAGAGAUGUC 83.9% 397 UUGAGAGUUCGAGACCAAC 83.0%
344 GCCAUGGUGUUUUCACAAG 83.9% 398 UUCACAAUGGUGGGGAAAA 83.0%
345 GAGACAGGAAAAGAACCCG 83.9% 399 UAAACCCUGGUCAUGCAGA 82.9%
346 UUUAUUGGAGAUGUGCCAC 83.9% 400 UUCAAUGGUCUCAGAAUCC 82.9%
347 CAUCUUUAUUGGAGAUGUG 83.9% 401 UCACAAUGGUGGGGAAAAG 82.9%
348 CCAUGGUGUUUUCACAAGA 83.9% 402 UCAAUGGUCUCAGAAUCCU 82.9%
349 GGAGGUCAGUGAAACACAG 83.9% 403 UCGAGUGAUGGUAUCACCU 82.9%
350 AAAAUUCAAUGGUCUCAGA 83.9% 404 AUUCAAUGGUCUCAGAAUC 82.9%
351 AAAUUCAAUGGUCUCAGAA 83.8% 405 AAUUCAAUGGUCUCAGAAU 82.9%
352 AGCAUCUUUAUUGGAGAUG 83.8% 406 UCAGUGAAACACAGGGAAC 82.8%
353 AUGACUCCAAGCACAGAGA 83.8% 407 AUAAACCCUGGUCAUGCAG 82.8%
354 CUAGCAUCUUUAUUGGAGA 83.8% 408 ACCCUGGUCAUGCAGACCU 82.8%
355 GCAUCUUUAUUGGAGAUGU 83.8% 409 AAACCCUGGUCAUGCAGAC 82.8%
356 GACAUAAACCCUGGUCAUG 83.8% 410 AACCCUGGUCAUGCAGACC 82.8%
357 UAUCUCCUGAGGAGGUCAG 83.8% 411 GUCAGUGAAACACAGGGAA 82.7%
358 CAAUUCUCCUGUAUUCAAC 83.8% 412 GAGGAUUGCAUGAUAAAAG 82.7%
359 GAUGAGAAUACUUGUAAGG 83.8% 413 GUAAGGGGCAAUUCUCCUG 82.7%
360 UAGCAUCUUUAUUGGAGAU 83.8% 414 AGGAUUGCAUGAUAAAAGC 82.7%
361 AUCUUUAUUGGAGAUGUGC 83.7% 415 UGUAAGGGGCAAUUCUCCU 82.7%
362 UGACUCCAAGCACAGAGAU 83.7% 416 CAUAAACCCUGGUCAUGCA 82.7%
363 AUCUCCUGAGGAGGUCAGU 83.7% 417 UGAGAGUUCGAGACCAACG 82.6%
364 ACAUAAACCCUGGUCAUGC 83.7% 418 CAAGAGGAUUGCAUGAUAA 82.6%
365 GAGAAUCAGCUCAUCCUUC 83.7% 419 AAGAGGAUUGCAUGAUAAA 82.6%
366 UGAGAAUCAGCUCAUCCUU 83.7% 420 UCACAAGAGGAUUGCAUGA 82.5%
367 GACUCCAAGCACAGAGAUG 83.7% 421 UAAGGGGCAAUUCUCCUGU 82.5%
368 ACUAGCAUCUUUAUUGGAG 83.7% 422 GGAUUGCAUGAUAAAAGCA 82.5%
369 ACUCCAAGCACAGAGAUGU 83.7% 423 CACAAGAGGAUUGCAUGAU 82.5%
370 AAGGAACGUGUUGGGAACA 83.6% 424 AGAGGAUUGCAUGAUAAAA 82.5%
371 CAAGGAACGUGUUGGGAAC 83.6% 425 ACAGAAGGAUUGCAUGAUA 82.5%
372 GGCAAUCUCCAAACAUUGA 83.6% 426 GUGUUUUCACAAGAGGAUU 82.4%
427 UGUUUUCACAAGAGGAUUG 82.4% 481 CAUGGUGUUUUCACAAGAG 80.8%
428 AAGAAGUGCUUACAGGCAA 82.3% 482 AAUGUUGUACAACAAAAUG 80.8%
429 UUCACAAGAGGAUUGCAUG 82.3% 483 GGUGUUUUCACAAGAGGAU 80.8%
430 UUUCACAAGAGGAUUGCAU 82.3% 484 ACAAGGAUGGUGGACAUUC 80.6%
431 GUUUUCACAAGAGGAUUGC 82.3% 485 CAAGGAUGGUGGACAUUCU 80.6%
432 GAAGAAGUGCUUACAGGCA 82.3% 486 AACUACAAAAGGACCACUA 80.6%
433 UUUUCACAAGGAGAUUGCA 82.3% 487 ACUACAACAAGACCACUAA 80.6%
434 GCCAAUACAGUGGGUUUGU 82.2% 488 GCAGAUCCACUAGCAUCUU 80.5%
435 AGGGGCAAUUCUCCUGUAU 82.1% 489 CAGAUCCACUAGCAUCUUU 80.5%
436 UUAGAGGUGACCUGAAUUU 82.1% 490 GUGAUGGUAUCACCUUUGG 80.4%
437 UGGAAUUUGAACCAUUUCA 82.1% 491 UGAUGGUAUCACCUUUGGC 80.4%
438 GGGGCAAUUCUCCUGUAUU 82.1% 492 AGAUACGGACCAGCAUUAA 80.4%
439 AAGGGGCAAUUCUCCUGUA 82.1% 493 GAGUGAUGGUAUCACCUUU 80.4%
440 AUGGAAUUUGAACCAUUUC 82.1% 494 AUCCACUAGCAUCUUUAUU 80.3%
441 GUUAGAGGUGACCUGAAUU 82.1% 495 GAUACGGACCAGCAUUAAG 80.3%
442 AAAAUGGAAUUUGAACCAU 82.0% 496 AGAUCCACUAGCAUCUUUA 80.3%
443 UGUACAACAAAAUGGAAUU 82.0% 497 GAUCCACUAGCAUCUUUAU 80.3%
444 AAAUGGAAUUUGAACCAUU 82.0% 498 CGAGUGAUGGUAUCACCUU 80.3%
445 GUACAACAAAAUGGAAUUU 82.0% 499 CAACUACAACAAGACCACU 80.3%
446 CAGUUAGAGGUGACCUGAA 81.9% 500 UUACAGGCAAUCUCCAAAC 80.2%
447 GAGGUGACCUGAAUUUCGU 81.8% 501 ACAGGCAAUCUCCAAACAU 80.2%
448 AGAGGUGACCUGAAUUUCG 81.8% 502 CUUACAGGCAAUCUCCAAA 80.2%
449 UAGAGGUGACCUGAAUUUC 81.8% 503 UACAGGCAAUCUCCAAACA 80.2%
450 AAAGCAGUUAGAGGUGACC 81.8% 504 CAGGCAAUCUCCAAACAUU 80.2%
451 AAGCAGUUAGAGGUGACCU 81.8% 505 AGUGAUGGUAUCACCUUUG 80.2%
452 AAAAGCAGUUAGAGGUGAC 81.8% 506 AGGCAAUCUCCAAACAUUG 79.9%
453 AGUUAGAGGUGACCUGAAU 81.8% 507 UAUGGAAAGAAUAAAAGAA 79.9%
454 GCAGUUAGAGGUGACCUGA 81.8% 508 AAGAUACGGACCAGCAUUA 79.9%
455 AGCAGUUAGAGGUGACCUG 81.8% 509 AUGCGAAAGUGCUUUUUCA 79.7%
456 AAUGGAAUUUGAACCAUUU 81.7% 510 UAUCAAUGGAUCAUCAGAA 79.7%
457 GGAGAAGUGAGGAAUGACG 81.7% 511 GGAUGGUGGACAUUCUUAG 79.7%
458 GGGCAAUUCUCCUGUAUUC 81.7% 512 ACCUAUCAAUGGAUCAUCA 79.6%
459 GAGAAGUGAGGAAUGACGA 81.7% 513 GCUUACAGGCAAUCUCCAA 79.6%
460 UGGAGAAGUGAGGAAUGAC 81.6% 514 AAGGAUGGUGGACAUUCUU 79.6%
461 UUGUACAACAAAAUGGAAU 81.4% 515 AGGAUGGGUGACAUUCUUA 79.6%
462 UGUUGUACAACAAAAUGGA 81.4% 516 GAAGUGCUUACAGGCAAUC 79.6%
463 AGCAUUAAGCAUCAAUGAA 81.4% 517 AUCAAUGGAUCAUCAGAAA 79.6%
464 CAGCAUUAAGCAUCAAUGA 81.4% 518 UGCUUACAGGCAAUCUCCA 79.6%
465 CCAGCAUUAAGCAUCAAUG 81.4% 519 AAGUGCUUACAGGCAAUCU 79.6%
466 AUGUUGUACAACAAAAUGG 81.3% 520 GAAGUGAGGAAUGACGAUG 79.5%
467 GGAGUAAAAKGAGUGAUGC 81.3% 521 GUGCUUACAGGCAAUCUCC 79.5%
468 AAUUGAAGACCCAGAUGAA 81.3% 522 AAGUGAGGAAUGACGAUGU 79.5%
469 UGGAGUAAAAUGAGUGAUG 81.3% 523 AGAGACUGACAAUAACUUA 79.5%
470 UUCAACUACAACAAGACCA 81.2% 524 GAGAGACUGACAAUAACUU 79.5%
471 UCAACUACAACAAGACCAC 81.2% 525 AGAAGUGCUUACAGGCAAU 79.5%
472 GUUGUACAACAAAAUGGAA 81.2% 526 GAAGAUACGGACCAGCAUU 79.5%
473 AUGGUGUUUUCACAAGAGG 81.0% 527 GAUGCGAAAGUGCUUUUUC 79.5%
474 AUGGAGUAAAAUGAGUGAU 81.0% 528 UCAGCUCAUCCUUCAGCUU 79.5%
475 CUAUGGAGUAAAAUGAGUG 81.0% 529 AUGUGCCACAGCACACAAA 79.4%
476 UGGUGUUUUCACAAGAGGA 81.0% 530 AAUACCUAUCAAUGGAUCA 79.4%
477 UAUGGAGUAAAAUGAGUGA 81.0% 531 CCUAUCAAUGGAUCAUCAG 79.4%
478 AGAAGUGAGGAAUGACGAU 80.9% 532 AUACCUAUCAAUGGAUCAU 79.4%
479 CAAUGUUGUACAACAAAAU 80.8% 533 UGUGCCACAGCACACAAAU 79.4%
480 AUUCAACUACAACAAGACC 80.8% 534 AGAAGAUACGGACCAGCAU 79.4%
535 AGUGCUUACAGGCAAUCUC 79.4% 589 GAUAGCCAUCAAUUAAUGU 78.7%
536 AUCAGCUCAUCCUUCAGCU 79.4% 590 GUGAGGAAUGACGAUGUUG 78.7%
537 AGGAGUUCACAAUGGUGGG 79.4% 591 GUCAAUACCUAUCAAUGGA 78.7%
538 GAGGAGUUCACAAUGGUGG 79.4% 592 AGUGAGGAAUGACGAUGUU 78.7%
539 AAUCAGCUCAUCCUUCAGC 79.3% 593 GGAGUUCACAAUGGUGGGG 78.6%
540 GAUGUGCCACAGCACACAA 79.3% 594 CCACAAGCACACAAAUUGGC 78.5%
541 AGCUCAUCCUUCAGCUUUG 79.2% 595 AGAACUCUAUUCCAACAAA 78.5%
542 CUGUAUUCAACUACAACAA 79.2% 596 GAUGUCAAUGAGAGGAAUA 78.5%
543 GCUCAUCCUUCAGCUUUGG 79.2% 597 GAACUCUAUUCCAACAAAU 78.5%
544 UCAAUGAGAGGAAUAAGAG 79.2% 598 GGUCAGUGAAACACAGGGA 78.5%
545 UGAGAGGAAUAAGAGUCAG 79.2% 599 AGAUGUCAAUGAGAGGAAU 78.5%
546 CAAUGAGAGGAAUAAGAGU 79.2% 600 GAGAUGUCAAUGAGAGGAA 78.5%
547 GUGCCACAGCACACAAAUU 79.2% 601 AACUCUAUUCCAACAAAUG 78.5%
548 GAGGAAUAAGAGUCAGCAA 79.2% 602 GGGACAAGGAUGGUGGACA 78.4%
549 CCUGUAUUCAACUACAACA 79.2% 603 CAAACUCUAUGGAGUAAAA 78.4%
550 CAGCUCAUCCUUCAGCUUU 79.2% 604 GGACAAGGAUGGUGGACAU 78.4%
551 AAUGAGGGAAUAAGGAGUC 79.1% 605 ACAGCACACAAAUUGGCGG 78.4%
552 UGGAUUCAACUACAACAAG 79.1% 606 CACAGCACACAAAUUGGCG 78.4%
553 AGAGGAAUAAGAGUCAGCA 79.1% 607 CAAUACCUAUCAAUGGAUC 78.3%
554 CUAUCAAUGGAUCAUCAGA 79.1% 608 GACAAGGAUGGUGGACAUU 78.3%
555 GGUCAAUACCUAUCAAUGG 79.1% 609 AAACUCUAUGGAGUAAAAU 78.3%
556 GAGUCAGCAAAAUGGGUGU 79.1% 610 CAAAAUGGAAUUUGAACCA 78.1%
557 AUGAGAGGAAUAAGAGUCA 79.1% 611 UGUUGGAACAAAUGUAACA 78.1%
558 UGGUCAAUACCUAUCAAUG 79.1% 612 AACAAAAUGGAAUUUGAAC 78.1%
559 UCUCCUGUAUUCAACUACA 79.1% 613 AACUCUAUGGAGUAAAAUG 78.1%
560 AGAGUCAGCAAAAUAGGUG 79.1% 614 ACAAAAUGGAAUUUGAACC 78.1%
561 GCCACAGCACACAAAUUGG 79.1% 615 CACACAAAUUGGCGGGACA 78.1%
562 CUCCUGUAUUCAACUACAA 79.1% 616 GUUGGGAACAAAUGUACAC 78.1%
563 GUCAAUGAGAGGAAUAAGA 79.1% 617 GCACACAAAUUGGCGGGAC 78.0%
564 AGAGAUGUCAAUGAGAGGA 79.1% 618 CAGAAAGAUGCGAAAGUGC 78.0%
565 UGUCAAUGAGAGGAAUAAG 79.1% 619 AGCACACAAAUUGGCGGGA 78.0%
566 GGAUGGCCAUCAAUUAAUG 79.1% 620 AAAGAUGCGAAAGUGCUUU 78.0%
567 GAGAGGAAUAAGAGUCAGC 79.1% 621 AGAAAGAUGCGAAAGUGCU 78.0%
568 UGCCACAGCACACAAAUUG 79.1% 622 AAGAUGCGAAAGUGCUUUU 78.0%
569 GGAAUAAGAGUCAGCAAAA 79.0% 623 GCGGGACAAGGAUGGUGGA 78.0%
570 UACCUAUCAAUGGAUCAUC 79.0% 624 ACACAAAUUGGCGGGACAA 78.0%
571 UUGGCGGGACAAGGAUGGU 79.0% 625 UGAUGUCGCAGUCUCGCAC 77.9%
572 AUUGGCGGGACAAGGAUGG 79.0% 626 CAACAAAAUGGAAUUUGAA 77.9%
573 UCAAUACUACUCAAUGGAU 78.9% 627 GGAACAAAUGUACACUCCA 77.8%
574 AUGCAGACCUCAGUGCCAA 78.9% 628 CAAAUGUACACUCCAGGUG 77.8%
575 CAAGGACAAACUCUAUGGA 78.9% 629 CUGAUGUCGCAGUCUCGCA 77.8%
576 AAGGACAAACUCUAUGGAG 78.9% 630 CGGGACAAGGAUGGUGGAC 77.8%
577 AGGAAUAAGAGUCAGCAAA 78.9% 631 GGGAACAAAUGUACACUCC 77.8%
578 GAGUUCACAAUGGUGGGGA 78.9% 632 UUGGGAACAAAUGUACACU 77.8%
579 AAUAAGAGUCAGCAAAAUG 78.9% 633 GAACAAAUGACUACUCCAG 77.8%
580 AGUUCACAAUGUGUGGGAA 78.9% 634 AAAUGGUCACAUCCAGUGG 77.8%
581 GAAUAAGAGUCAGCAAAAU 78.9% 635 GAAAGAUGCGAAAGUGCUU 77.8%
582 AUGUCAAUGAGAGGAAUAA 78.9% 636 UGGGAACAAAUGUACACUC 77.8%
583 UUGGUCAAUACCUAUCAAU 78.9% 637 ACAAAUGUACACUCCAGGU 77.8%
584 GUUCACAAUGGUGGGGAAA 78.9% 638 GAGUAGACAUAAACCCUGG 77.8%
585 UCCUGUAUUCAACUACAAC 78.9% 639 AACAAAUGUACACUCCAGG 77.8%
586 UUCUCCUGUAUUCAACUAC 78.8% 640 AGAGUAGACAUAAACCCUG 77.8%
587 CAUGCAGACCUCAGUGCCA 78.8% 641 AUUUUAGAAAUCAAGUCAA 77.7%
588 UGAGGAAUGACGAUGUUGA 78.7% 642 AAGAGUAGACAUAAACCCU 77.7%
643 CAUUUUAGAAAUCAAGUCA 77.7% 697 GAUAAUAAAGCUUCUCCCU 76.9%
644 GAAGAGUAGACAUAAACCC 77.7% 698 AAAGCUUCUCCCUUUUGCA 76.9%
645 UGAAAGACCCAGAUGAAGC 77.7% 699 AUAAAGCUUCUCCCUUUUG 76.9%
646 GGCGGGACAAGGAUGGUGG 77.7% 700 GAACCAUUUCAAUCUUUAG 76.8%
647 AAGACCCAGAUGAAAGCAC 77.7% 701 AGUAGACAUAAACCCUGGU 76.8%
648 AAUGUACACUCCAGGUGGA 77.6% 702 CUCAUCCUUCAGCUUUGGU 76.8%
649 GAUGUCGCAGUCUCGCACU 77.6% 703 UCAUCCUUCAGCUUUGGUG 76.8%
650 UGGCGGGACAAGGAUGGUG 77.6% 704 UGAACCAUUUCAAUCUUUA 76.8%
651 GAAGACCCAGAUGAAAGCA 77.6% 705 AACCAUUUCAAUCUUUAGU 76.8%
652 CAUUUUCAGAAAGAUGCGA 77.5% 706 UUUGAACCAUUUCAAUCUU 76.8%
653 UUUUCAGAAAGAUGCGAAA 77.5% 707 UUGAACCAUUUCAAUCUUU 76.8%
654 AUUUUCAGAAAGAUGCGAA 77.5% 708 UUCUCCCUUUUGCAGCCGC 76.8%
655 AGACCACUAAAAGACUAAC 77.4% 709 CAUCCUUCAGCUUUGGUGG 76.8%
656 UUUCAGAAAGAUGCGAAAG 77.4% 710 CUUCUCCCUUUUGCAGCCG 76.8%
657 AAGACCACUAAAAGACUAA 77.4% 711 GUAUAUACAUUGAAGUUUU 76.7%
658 AUUGAAAGACCCAGAUGAA 77.4% 712 GGAACAAGCAGUAUAUACA 76.7%
659 AACAAGGCCACUAAAAGAC 77.4% 713 GAAUUUGAACCAUUUCAAU 76.7%
660 ACAAGACCACUAAAAGACU 77.4% 714 UCUCCCUUUUGCAGCCGCU 76.7%
661 CAGCACACAAAUUGGCGGG 77.4% 715 CUCCCUUUUGCAGCCGCUC 76.7%
662 AGACCCAGAUGAAAGCACA 77.4% 716 UCCCUUUUGCAGCCGCUCC 76.7%
663 GACCACUAAAAGACUAACA 77.4% 717 GGAAUUUGAACCAUUUCAA 76.7%
664 UUCAGAAAGAGCGGAAAGU 77.4% 718 AGUAUAUACAUUGAAGUUU 76.7%
665 GUAGACAUAAACCCUGGUC 77.3% 719 AUUUGAACCAUUUCAAUCU 76.7%
666 ACCCAGAUGAAAGCACAUC 77.3% 720 AAUUUGAACCAUUUCAAUC 76.7%
667 UAGACAUAAACCCUGGUCA 77.3% 721 GAACAAGCAGUAUAUACAU 76.7%
668 CAAGACCACUAAAAGACUA 77.2% 722 GCUUCUCCCUUUUGCAGCC 76.7%
669 UGGUCAUGCAGACCUCAGU 77.2% 723 AACAAGCAGUAUAUACAUU 76.5%
670 GGUCAUGCAGACCUCAGUG 77.2% 724 CCUUUUGCAGCCGCUCCAC 76.4%
671 UCAGAAAGAUGCGAAAGUG 77.2% 725 ACAAACUCUAUGGAGUAAA 76.4%
672 GCACAUCCGGAGUGGAGUC 77.2% 726 GGACAAACUCUAUGGAGUA 76.4%
673 GUCAUGCAGACCUCAGUGC 77.2% 727 GACAAACUCUAUGGAGUAA 76.4%
674 GACCCAGAUGAAAGCACAU 77.2% 728 CAGGAUACUAACAUCAGAA 76.4%
675 GUGUUGGGAACAAAUGUAC 77.1% 729 AGGACAAACUCUAUGGAGU 76.4%
676 AGCAGUAUAUACAUUGAAG 77.1% 730 AACGUGUUGGGAACAAAUG 76.4%
677 GUGGUGGUUAGCAUUGAUC 77.1% 731 GCCAGGAUACUAACAUCAG 76.4%
678 AGCUUCUCCCUUUUGCAGC 77.1% 732 AGGAACGUGUUGGGAACAA 76.4%
679 UGGUGGUUAGCAUUGAUCG 77.1% 733 GAACGUGUUGGGAACAAAU 76.4%
680 GGAUACUAACAUCAGAAUC 77.1% 734 CCAGGAUACUAACAUCAGA 76.4%
681 CGUGUUGGGAACAAAUGUA 77.1% 735 CUUUUGCAGCCGCUCCACC 76.4%
682 AAGCUUCUCCCUUUUGCAG 77.1% 736 CAGUAUAUACAUUGAAGUU 76.4%
683 GCAGUAUAUACAUUGAAGU 77.1% 737 GGAACGUGUUGGGAACAAA 76.4%
684 ACGUGUUGGGAACAAAUGU 77.1% 738 UUUUGCAGCCGCUUCCACA 76.4%
685 AAGCAGUAUAUACAUUGAA 77.0% 739 AGAUGCGAAAGUGCUUUUU 76.3%
686 AGGAUACUAACAUCAGAAU 77.0% 740 GGCCAUUAGAGGCCAAUAC 76.2%
687 GCAUUUUCAGAAAGAUGCG 77.0% 741 AGGCCAUUAGAGGCCAAUA 76.2%
688 ACAAGCAGUAUAUACAUUG 77.0% 742 CCCUUUUGCAGCCGCUCCA 76.2%
689 UCAUGCACACCUCAGUGCC 77.0% 743 UUAGAGGCCAAUACAGUGG 76.2%
690 CAAGCAGUAUAUACAUUGA 77.0% 744 AAGGCCAUUAGAGGCCAAU 76.1%
691 AGACAUAAACCCUGGUCAU 77.0% 745 CCAUUAGAGGCCAAUACAG 76.1%
692 AAUAAAGCUUCUCCCUUUU 76.9% 746 AUUAGAGGCCAAUACAGUG 76.1%
693 UAAAGCUUCUCCCUUUUGC 76.9% 747 GCCAUUAGAGGCCAAUACA 76.1%
694 AUAAUAAAGCUUCUCCCUU 76.9% 748 UCAGCAGAUCCACUAGCAU 75.9%
695 UAAUAAAGCUUCUCCCUUU 76.9% 749 GUAUCAGCAGAUCACUAAG 75.9%
696 CACAAAUUGGCGGGGACAAG 76.9% 750 CAAAAUUCAAUGGUCUCAG 75.9%
751 UAUCAGCAGAUCCACUAGC 75.9% 805 GGGUGGUGGUUAGCAUUGA 74.7%
752 CAGCAAUCCACUUAGCAUC 75.9% 806 AGUAUCAGCAGAUCCACUA 74.7%
753 CAUUAGAGGCCAAUACAGU 75.9% 807 CAGUAUCAGCAGAUCCACD 74.7%
754 GUCAAAAUUCAAUGGUCUC 75.8% 808 AUUAAGCAUCAAUGAACUG 74.7%
755 UCAAAAUUCAAUGGUCUCA 75.8% 809 AGGGUGGUGGUUAGCAUUG 74.7%
756 GGAUCAUCAGAAAUUGGGA 75.8% 810 AGAACUCCGAGAUUGCAAA 74.7%
757 UGGAUCAUCAGAAAUUGGG 75.8% 811 GAACUCCGAGAUUGCAAAA 74.7%
758 GAUCAUCAGAAAUUGGGAA 75.7% 812 GACAGAAGAUACGGACCAG 74.6%
759 AGCAGAUCCACUAGCAUCU 75.7% 813 ACAGAAGAUACGGACCAGC 74.6%
760 UUGAAGACCCAGAUGAAAG 75.6% 814 CAGAACUCUAUUCCAACAA 74.6%
761 ACUCUAUGGAGUAAAAUGA 75.6% 815 CAGAAUGCAGUUCUCUUCA 74.6%
762 AGGAAGACAGAAGAUACGG 75.6% 816 GCAGUAUCAGCAGAUCCAC 74.6%
763 AUCAGCAGAUCCACUAGCA 75.6% 817 GGUGGUGGUUAGCAUUGAU 74.6%
764 UGUCAAAAUUCAAUGGUCU 75.6% 818 CUCCGAGAUUGCAAAAUUU 74.6%
765 AAGGAAGACAGAAGAUACG 75.6% 819 UCCGAGAUUGCAAAAUUUC 74.6%
766 CAAUGGAUCAUCAGAAAUU 75.5% 820 CAGAAGAUACGGACCAGCA 74.6%
767 CCCUGGUCAUGCAGACCUC 75.5% 821 GAAGACAGAAGAUACGGAC 74.5%
768 AAUGGAUCAUCAGAAAUUG 75.5% 822 AGCCAGGAUACUAACAUCA 74.5%
769 AUGGAUCAUCAGAAAUUGG 75.5% 823 ACUCCGAGAUUGCAAAAUU 74.5%
770 AAAGCAGAAAUGCAGUCUC 75.4% 824 GAGGGUGGUGGUUAGCAUU 74.5%
771 UUUGUCAGAACUCUAUUCC 75.4% 825 AAGACAGAAGAUACGGACC 74.5%
772 UUGUCAGAACUCUAUUCCA 75.4% 826 GGAAGACAGAAGAUACGGA 74.5%
773 CAAAGCAGAAUGCAGUUCU 75.4% 827 ACCAACGUGGGAAUGUAUU 74.4%
774 UCAAUGGAUCAUCAGAAAU 75.3% 828 AGACAGAAGAUACGGACCA 74.4%
775 CUCCACCAAAGCAAAGCAG 75.3% 829 CGAGAUUGCUAAAUUUCUC 74.4%
776 GCUCCACCAAAGCAAAGCA 75.3% 830 CCGAGAUUGCAAAAUUUCU 74.4%
777 UAAGCAUCAAUGAACUGAG 75.3% 831 UUAAGCAUCAAUGAACUGA 74.4%
778 UCUAUGGAGUAAAAUGAGU 75.3% 832 GACCAACGUGGGAAUGUAU 74.4%
779 UCAGAACUCUAUUCCAACA 75.2% 833 UAAAUGUGAGGGGAUCAGG 74.2%
780 GAGCCAGGAUACUAACAUC 75.2% 834 UGACUGUAAAUGUGAGGGG 74.1%
781 GCAGAAUGCAGUUCUCUUC 75.2% 835 UGGUGGGGAAAUGAGCAAC 74.1%
782 GAGAGGGUGGUGGUUAGCA 75.2% 836 GUUGCUGGCGGAACAAGCA 74.1%
783 GGAGCCAGGAUACUAACAU 75.2% 837 UUGCUGGCGGAACAAGCAG 74.1%
784 CUGUCAAAAUUCAAUGGUC 75.2% 838 CCAGUUGCUGGCGGAACAA 74.0%
785 CAUUAAGCAUCAAUGAACU 75.2% 839 CACAAGAUGUAAUUAUGGA 74.0%
786 AGCAGAAUGCAGUUCUCUU 75.2% 840 ACAAGAUGUAAUUAUGGAA 74.0%
787 AGAGGGUGUGGGUUAGCAU 75.2% 841 AGGCACAAGAUGUAAUUAU 74.0%
788 AAGCAGAAUGCAGUUCUCU 75.2% 842 GCACAGAAGAUGAAUAUGG 74.0%
789 CUCUAUGGAGUAAAAUGAG 75.2% 843 AAGAUGUAAUUAUGGAAGU 74.0%
790 CGCUCCACCAAAGCAAAGC 75.2% 844 AGAUGUAAUUAUGGAAGUU 74.0%
791 GUCAGAACUCUAUUCCAAC 75.2% 845 GUAAAUGUGAGGGGAUCAG 74.0%
792 GCAUUAAGCAUCAAUGAAC 75.2% 846 GGCACAAGGAUAAAUUAUG 74.0%
793 AGCACAUCCGGAGUAGAGU 75.2% 847 AACCUUUGCAAAAGGGAAA 74.0%
794 CAGAGAGGGUGGUGGUUAG 75.1% 848 ACCUUGCAAAAGGGGAAAA 74.0%
795 UGGGAGCCAGGAUACUAAC 75.1% 849 CAGUUGCUGGCGGAACAAG 74.0%
796 ACAGAGGGGUGGUGGGUUA 75.1% 850 GAGGCACAAGAUGUAAUUA 74.0%
797 AGAGAGGGUGGUGGUUAGC 75.1% 851 CAGAUGAAAGCACAUCCGG 73.9%
798 GUGGGAGCCAGGAUACUAA 75.1% 852 UUUCUCCCAGUUGCUGGCG 73.9%
799 UGUCAGAACUCUAUUCCAA 75.1% 853 CUCCCAGUUGCUGGCGGAA 73.9%
800 GAAGAACUCCGAGAUUGCA 74.9% 854 GGCGGAACAAGCAGUAUAU 73.9%
801 GGGAGCCAGGAUACUAACA 74.8% 855 AUGGUGGGGAAAAGAGCAA 73.9%
802 AACUCCGAGAUUGCAAAAU 74.8% 856 UUCUCCCAGUUGCUGGCGG 73.9%
803 AAGAACUCCGAGAUUGCAA 74.8% 857 UACAAGACUUAUUUUGACA 73.9%
804 GAGAUUGCAAAAUUUCUCC 74.7% 858 AAAUGUGAGGGGAUCAGGG 73..9%
859 ACAAGACUUAUUUUGACAA 73.9% 913 UGAAUACUCCAGUACAGAG 73.2%
860 CAAGACUUAUUUUGACAAA 73.9% 914 CAAAUUGGCGGGACAAGGA 73.2%
861 UCCCAGUUGCUGGCGGAAC 73.9% 915 AAUACAGUGGGUUUGUCAG 73.2%
862 GCGGAACAAGCAGUAUAUA 73.9% 916 CAAUACAGUGGGUUUGUCA 73.2%
863 AUUUUCUCCAGUUGCUGGC 73.9% 917 AAUUGGCGGGACAAGGAUG 73.2%
864 CAAGAUGUAAUUAUGGAAG 73.9% 918 UAGGUAAGGAAGACAGAAG 73.2%
865 AUAUGACUCCAAGCACAGA 73.8% 919 CAAUGAAGUGGGAGCCAGG 73.2%
866 CGGAACAAGCAGUAUAUAC 73.8% 920 AGAUGAAAGCACAUCCGGA 73.2%
867 GAUAUGACUCCAAGCACAG 73.8% 921 CCAAUACAGUGGGUUUGUC 73.2%
868 AGUUGCUGGCGGAACAAGC 73.8% 922 GGUAAGGAAGACAGAAGAU 73.2%
869 UUGAGAAUCAGCUCAUCCU 73.8% 923 GUAAGGAAGACAGAAGAUA 73.2%
870 AAAAGAGCAACAGCUAUAC 73.8% 924 GGUGGGGAAAAGAGCAACA 73.1%
871 AAAGAGCAACAGCUAUACU 73.8% 925 GUAUGGAAAGAAUAAAAGA 73.1%
872 CCAGAUGAAAGCACAUCCG 73.8% 926 AAUACUCCAGUACAGAGAG 73.1%
873 CCCAGUUGCUGGCGGAACA 73.8% 927 ACAAAUUGGCGGGACAAGG 73.1%
874 GACUGUAAAUGUGAGGGGA 73.8% 928 GGAAAAGAGCAACAGCUAU 73.0%
875 CUGGCGGAACAAGCAGUAU 73.8% 929 GUGGAUGAAUACUCCAGUA 73.0%
876 ACUGUAAAUGUGAGGGGAU 73.8% 930 UGGAUGAAUACUCCAGUAC 73.0%
877 UGGCGGAACAAGCAGUAUA 73.8% 931 GAAAAGAGCAACAGCUAUA 73.0%
878 UGUAAAUGUGAGGGGAUCA 73.8% 932 GGAUGAAUACUCCAGUACA 73.0%
879 CUGUAAAUGUGAGGGGAUC 73.8% 933 AGGUAAGGAAGACAGAAGA 73.0%
880 GAAAGCACAUCCGGAGUGG 73.7% 934 GGCAAGGAGACGUGGUGUU 73.0%
881 AAAGCACAUCCGGAGUGGA 73.7% 935 GGGAAAAGAGCAACAGCUA 73.0%
882 UGCUGGCGGAACAAGCAGU 73.7% 936 UAAGGAAGACAGAAGAUAC 72.9%
883 GAAGUGGGAGCCAGGAUAC 73.7% 937 GACCAGCAUUAAGCAUCAA 72.9%
884 AAGUGGGAGCCAGGAUACU 73.7% 938 UAUUCCAACAAAUGAGAGA 72.9%
885 CCAACGUGGGAAUGUAUUA 73.7% 939 GGACCAGCAUUAAGCAUCA 72.9%
886 GCUGGCGGAACAAGCAGUA 73.7% 940 UAUGACUCCAAGCACAGAG 72.9%
887 AGUGGGAGCCAGGAUACUA 73.7% 941 GGUGUGGAUGAAUACUCCA 72.8%
888 AAGACUUAUUUUGACAAAG 73.6% 942 UGGAAGUUGUUUUUCCCAA 72.8%
889 UGAAAGCACAUCCGGAGUG 73.6% 943 GUGACAUGGUGGAAUAGAA 72.8%
890 UGGCCAUGGUGUUUUCACA 73.6% 944 AUGGAAGUUGUUUUUCCCA 72.8%
891 GUGGCCAUGGUGUUUUCAC 73.6% 945 ACCAGCAUUAAGCAUCAAU 72.8%
892 AUGAAUACUCCAGUACAGA 73.5% 946 UGACAUGGUGGAAUAGAAA 72.8%
893 AUGAAGUGGGAGCCAGGAU 73.5% 947 AACAAGAUUUCUCCCAGUU 72.8%
894 AAUAAGUGGGAGCCAGGGA 73.5% 948 GGGGAAAAGAGCAACAGCU 72.8%
895 CCCAAUGAAGUGGGAGCCA 73.5% 949 GAAGUUGUUUUUCCCAAUG 72.8%
896 UGAAGUGGGAGCCAGGAUA 73.5% 950 GGAAAGUUGUUUUCCCAAU 72.8%
897 GGAACAUAGUAAGAAGAGC 73.5% 951 AAGUUGUUUUUCCCAAUGA 72.8%
898 AGGAACAUAGUAAGAAGAG 73.5% 952 GGGUGUGGAUGAAUACUCC 72.8%
899 AAGCACAUCCGGAGUGGAG 73.5% 953 CAAUAGCCGAAGCAAUAAU 72.7%
900 CCCAGAUGAAAGCACAUCC 73.5% 954 UCAAUAGCCGAAGCAAUAA 72.7%
901 AUGAAAGCACAUCCGGAGU 73.5% 955 AAAACAAGAUUUCUCCCAG 72.7%
902 UCUCCCAGUUGCUGGCGGA 73.5% 956 GAAAAACAAGAUUUCUCCC 72.7%
903 GAUGAAAACUCCAGUACAG 73.5% 957 AAACAAGUUUCUCCCAGGU 72.7%
904 AGACUUAUUUUGACAAAGU 73.3% 958 GUGUGGAUGAAUACUCCAG 72.7%
905 CCAAUGAAGUGGGAGCCAG 73.3% 959 ACAAGAUUUCUCCCAGUUG 72.7%
906 AUGGCCAUCAAUUAAUGUU 73.3% 960 CAAGAUUUCUCCAGUUGGC 72.7%
907 UGGGGAAAGGAGCAACAGC 73.2% 961 UGGGUGUGGAUGAAUACUC 72.7%
908 GAAUACUCCAGUACAGAGA 73.2% 962 UUCAUUUUAGAAAUCAAGU 72.6%
909 GAUGAAAGCACAUCCGGAG 73.2% 963 CAGUCAAUAGCCGAAGCAA 72.6%
910 GUGGGGGAAAGAGCAACAG 73.2% 964 AUACAGUGGGUUUGUCAGA 72.6%
911 AAAUUGACGGGACAAGGAU 73.2% 965 ACAGUGGGUUUGUCAGAAC 72.6%
912 GGCCAUGGUGUUUUCACAA 73.2% 966 GUCAAUAGCCGAAGCAAUA 72.6%
967 UACAGUGGGUUUGUCAGAA 72.6% 1021 CUUGAUGGUUGCAUACACU 72.2%
968 AAGAUUUCUCCCAGUUGCU 726% 1022 AGCAAAAUGGGUGUGGAUG 72.2%
969 GUUCAUUUUAGAAAUCAAG 72.6% 1023 CCACCAAAGCAAAGCAGAA 72.2%
970 GGGCAAGGAGACGUGGUGU 72.6% 1024 AAAGAAGAACUCCGAGAUU 72.2%
971 AUGGGUGUGGAUGAAUACU 72.6% 1025 UAUUACCAGAUAUGACUCC 72.1%
972 UCAUUUUAGAAAUCAAGUC 72.6% 1026 CAGCAAAAUGGGUGUGGAU 72.1%
973 UUCAGCUCAUAGUGAGUGG 72.5% 1027 UGGUUCAGCUCAUAGUGAG 72.1%
974 CCAGAUAUGACUCCAAGCA 72.5% 1028 GUUCAGCUCAUAGUGAGUG 72.1%
975 CAAAGCAAAGCAGAAUGCA 72.5% 1029 AAGAGUCAGCAAAAUGGGU 71.1%
976 AGUCAAUAGCCGAAGCAAU 72.5% 1030 GUCAGCAAAAUGGGUGUGG 72.1%
977 CCAAAGCAAAGCAGAAUGC 72.5% 1031 UCAGCAAAAUGGGUGUGGA 72.1%
978 UACAACAAGACCACUAAAA 72.4% 1032 ACCUGAAUUUCGUCAACAG 71.0%
979 AGAAAUCAAGUCAAGAUAC 72.4% 1033 CUCCCUUGAUGGUUGCAUA 72.0%
980 AGCAAAGCAGAAUGCAGUU 72.4% 1034 CUAUUCCAACAAAUGAGAG 72.0%
981 CAGAUAUGACUCCAAGCAC 72.4% 1035 UCCCUUGAUGGUUGCAUAC 72.0%
982 GUAAAUGAAGUGAUGCUGG 72.4% 1036 UCUCCCUUGAUGGUUGCAU 72.0%
983 GAAAUCAAGUCAAGAUACG 72.4% 1037 GGUUCAGCUCAUAGUGAGU 72.0%
984 UUAUGGAAGUUGUUUUUCC 72.4% 1038 AUUACCAGAUAUGACUCCA 72.0%
985 CAACAAGACCACUAAAAGA 72.4% 1039 CAUCCGGAGUGGAGUCCGC 72.0%
986 AAAGCAAAGCAGAAUGCAG 72.4% 1040 GACCUGAAUUUCGUCAACA 72.0%
987 UACCAGAUAUGACUCCAAG 72.4% 1041 UUGGUUCAGCUCAUAGUGA 72.0%
988 AGAUAUGACUCCAAGCACA 72.4% 1042 CCAAAAGUAUACAAGACUU 71.9%
989 AUUAUGGAAGUUGUUUUUC 72.4% 1043 ACUGAAGAACAAGCUGUGG 71.9%
990 ACAACAAGACCACUAAAAG 72.4% 1044 CUGAAGAACAAGCUGUGGA 71.9%
991 AAGCAAAGCAGAAUGCAGU 72.4% 1045 CAAAAGUAUACAAGACUUA 71.9%
992 GAGUAAAAUGAGUGAUGCU 72.4% 1046 AUUGGGAAGCUGUCAAAAU 71.9%
993 AGUAAAAUGAGUGAUGCUG 72.4% 1047 AAAGAUGCCGGCACUUUAA 71.9%
994 ACCAGAUAUGACUCCAAGC 72.4% 1048 AUUGGUUCAGCUCAUAGUG 71.9%
995 UGUGGAUGAAUACUCCAGU 72.4% 1049 UCAAGAACAAGCUGUGGAU 71.9%
996 AAAAACAAGAUUUCUCCCA 72.4% 1050 AAUUGGGAAGCUGUCAAAA 71.9%
997 GCAAAGCAGAAUGCAGUUC 72.3% 1051 AGUCAGCAAAAUGGGUGUG 71.7%
998 GAUUGGUUCAGCUCAUAGU 72.3% 1052 ACAUCCGGAGUGGAGUCCG 71.7%
999 UUUUAGAAAUCAAGUCAAG 72.3% 1053 UGCAAAAUUUCUCCCUUGA 71.7%
1000 UAUGGAAGUUGUUUUUCCC 72.3% 1054 AAAAUUUCUCCCUUGAUGG 71.7%
1001 AGAUUGGUUCAGCUCAUAG 72.3% 1055 UUUUGGUCAAUACCUAUCA 71.7%
1002 AAUGGGUGUGGAUGAAUAC 72.3% 1056 GCAAAAUUUCUCCCUUGAU 71.7%
1003 UUUAGAAAUCAAGUCAAGA 72.3% 1057 CAAAAUUUCUCCCUUGAUG 71.7%
1004 CUACAACAAGACCACUAAA 72.3% 1058 CACAAUGGUGGGGAAAAGA 71.7%
1005 UAGAAAUCAAGUCAAGAUA 72.3% 1059 AAAUUUCUCCCUUGAUGGU 71.7%
1006 UUAGAAAUCAAGUCAAGAU 72.3% 1060 GAGUUCGAGACCAACGUGG 71.6%
1007 UUACCAGAUAUGACUCCAA 72.3% 1061 AUUUCUCCUUGAUGGUUUG 71.6%
1008 ACCAAAGCAAAGCAGAAUG 72.2% 1062 UGUUGGUAAUGAAACGAAA 71.6%
1009 ACAAUGGUGGGGAAAAGAG 72.2% 1063 UAUACAAGACUUAUUUUGA 71.6%
1010 CAAUGGUGGGGAAAAGAGC 72.2% 1064 UGGGAAGCUGUCAAAAUUC 71.6%
1011 CCCUUGAUGGUUGCAUACA 72.2% 1065 GAGAGUUCGAGACCAACGU 71.6%
1012 CACCAAAGCAAAGCAGAAU 72.2% 1066 AAAUUGGGAAGCUGUCAAA 71.6%
1013 AAUUGGUGGGGAAAGAGCA 72.2% 1067 AGUAUACAAGACUUAUUUU 71.6%
1014 AAAUGGGUGUGGAUGAAUA 72.2% 1068 GUGUUGGUAAUGAAACGAA 71.6%
1015 CAAAAUGGGUGUGGAUGAA 72.2% 1069 AAGUAUACAAGACUUAUUU 71.6%
1016 AAAAUGGGUGUGGAUGAAU 72.2% 1070 AAAGUAUACAAGACUUAUU 71.6%
1017 AAGAAGAACUCCGAGAUUG 72.2% 1071 AGAGUUCGAGACCAACGUG 71.6%
1018 GCAAAAUGGUUGUGGAUGA 72.2% 1072 GAAAAGAUGCCGGCACUUU 71.6%
1019 CCUUGAUGGUUGCAUACAU 72.2% 1073 UUCUCCCUUGAUGGUUGCA 71.6%
1020 AGAAGAACUCCGAGAUUGC 72.2% 1074 GGAAAAGAUGCCGGCACUU 71.6%
1075 GUAUACAAGACUUAUUUUG 71.6% 1129 CUGAGUCGGUUUUGGUCAA 71.2%
1076 UUGGGAAGCUGUCAAAAUU 71.6% 1130 AGUCGGUUUUGGUCAAUAC 71.2%
1077 GGGAAGCGCUCAAAAUUCA 71.6% 1131 GAGUCGGUUUUGGUCAAUA 71.2%
1078 AGAUUGCAAAAUCUCUCCC 71.6% 1132 CAGAAAUUUGGGAAAGCUC 71.1%
1079 GUUGGUAAUGAAACGAAAA 71.6% 1133 UUUUCCCAAUGAAGUGGGA 71.1%
1080 UUUCUCCCUUGAUGGUUGC 71.6% 1134 UUCCCAAUGAAGUGGGAGC 71.1%
1081 AAUUAUGGAAGUUGUUUUU 71.5% 1135 UUCCCAAUGAAGUGGGAGC 71.1%
1082 UGUUUUUCCCAAUGAAGUG 71.5% 1136 AGACCAACGUGGGAAUGUA 71.0%
1083 AUUGCAAAAUUUCUCCCUU 71.5% 1137 AAGAUGCCGGCACUUUAAU 71.0%
1084 UUUUUCCCAAUGAAGUGGG 71.5% 1138 UGAGUCGGUUUUGGUCAAU 71.0%
1085 GUUUUUCCCAAUGAAGUGG 71.5% 1139 AAAUCAAGUCAAGAUACGC 71.0%
1086 AAUUUCUCCCUUGAUGGUU 71.5% 1140 CGGUUUUGGUCAAUACCUA 71.0%
1087 UUCUCGGAAAAGAUGCCGG 71.5% 1141 UCGGUUUUGGUCAAUACCU 71.0%
1088 UUUGGUCAAUACCUAUCAA 71.5% 1142 CGAGACCAACGUGGGAAUG 71.0%
1089 GAUUGCAAAAUUUCUCCCU 71.5% 1143 GAGACCAACGUGGGAAUGU 71.0%
1090 AAAAGUAGACAAGACUUAU 71.5% 1144 AGGAUGCCGGCACUUAAUU 71.0%
1091 ACCCAAAAGUAUACAAGAC 71.5% 1145 GAUGCCGGCACUUUUAUUG 70.9%
1092 GUUUUGGUCAAUUACUAUC 71.5% 1146 AUGCCGGCACUUUAAUUGA 70.9%
1093 CACAUCCGGAGUGGAGUCC 71.5% 1147 UGCCGGCACUUUAAUUGAA 70.9%
1094 UUGUUUUUCCCAAUGAAGU 71.5% 1148 GCCGGCACUUUAAUUGAAG 70.8%
1095 GAAAUUGGGAAGCUGUCAA 71.4% 1149 UGAGGAGUUCACAAUGGUG 70.8%
1096 CGGAAAAGAUGCCGGCACU 71.4% 1150 CCGGCACUUUAAUUGAAGA 70.8%
1097 UCCACCAAAGCAAAGCAGA 71.4% 1151 AGUUCGAGACCAACGUGGG 70.8%
1098 AGAAAUUGGGAAGCUGUCA 71.4% 1152 AAUGUAUUAUUAUCUCCUG 70.8%
1099 AAGCUGUCAAAAUUCAAUG 71.4% 1153 UCAUCAGAAAUUGGGAAGC 70.8%
1100 UAUGAGGAGUUCACAAUGG 71.4% 1154 UUCGAGACCAACGUGGGAA 70.8%
1101 UCGGAAAAGAUGCCGGCAC 71.4% 1155 AUCAUCAGAAAUUGGGAAG 70.8%
1102 GGAAGCUGUCAAAAUUCAA 71.4% 1156 AUGUAUUAUUAUCUCCUGA 70.8%
1103 GCUGUCAAAAUUCAAUGGU 71.4% 1157 UCGAGACCAACGUGGGAAU 70.8%
1104 AUGAGGAGUUCACAAUGGU 71.4% 1158 GUUCGAGACCAACGUGGGA 70.8%
1105 GAAGCUGUCAAAAUUCAAU 71.4% 1159 GGUUUUGGUCAAUACCUAU 70.8%
1106 AGUUGUUUUUCCCAAUGAA 71.4% 1160 GGAAUGUAUUAUUAUCUCC 70.7%
1107 GUUGUUUUUCCCAAUGAAG 71.4% 1161 GGGAUGUAUUAUUAAUCUC 70.7%
1108 UUGCAAAAUUUCUCCCUUG 71.4% 1162 CAUCAGAAAUUGGGAAGCU 70.7%
1109 AGCUGUCAAAAUUCAAUGG 71.4% 1163 UCCCAAUGAAGUGGGAGCC 70.6%
1110 CUCGGAAAAGAUGCCGGCA 71.4% 1164 UAAGGCCAUUAGAGGCCAA 70.6%
1111 GAACAGUCAAUAGCCGAAG 71.3% 1165 GUCGGUUUUGGUCAAUACC 70.6%
1112 UACCCAAAAGUAUACAAGA 71.3% 1166 GGUCCUGAGUCGGUUUUGG 70.6%
1113 UCAAUGAUGUGGGAGAUUA 71.3% 1167 GUCCUGAGUCGGUUUUGGU 70.6%
1114 AAAAGAUGCCGGCACUUUA 71.3% 1168 CUAAGGCCAUUAGAGGCCA 70.6%
1115 GACAUGGUGGAAUAGAAAU 71.3% 1169 CCUAAGGCCAUUAGAGGCC 70.6%
1116 CAAUGAUGUGGGAGAUUAA 71.3% 1170 CGGCACUUUAAUUGAAGAC 70.6%
1117 GAAUAAAAGAACUACGGAA 71.3% 1171 ACAGUCAAUAGCCGAAGCA 70.5%
1118 AUCAGAAAUUGGGAAGCUG 71.3% 1172 UUCUCAUUAUAGGUAAGGA 70.3%
1119 GUGACCUGAAUUUCGUCAA 71.3% 1173 UCCUGAGUCGGUUUUGGUC 70.3%
1120 AGGUGACCUGAAUUUCGUC 71.3% 1174 CUCAUUACAGGUAAGGAAG 70.3%
1121 GGUGACCUGAAUUUCGUCA 71.3% 1175 UCAUUAUUAGGUAAGAAGA 70.3%
1122 UCAGAAAUUGGGAAGCUGU 71.2% 1176 UUUCUCAUUAUAGGUAAGG 70.3%
1123 UGACCUGAAUUUCGUCAAC 71.2% 1177 GAAUGUAUUAUUAUCUCCU 70.1%
1124 CCCAAAAGUAUACAAGACU 71.2% 1178 UCUCAUUAUAGGUAAGGAA 70.1%
1125 AUACAAGACUUAUUUUGAC 71.2% 1179 GAUCAGAUCGAGUGAUGGU 70.1%
1126 UCUCGGAAAAGAUGCCGGC 71.2% 1180 GGAUCAGAUCGAGUGAUGG 70.1%
1127 CCUGAGUCGGUUUUGGUCA 71.2% 1181 AUGGGAAUGGUUGGAGUAU 70.0%
1128 AACAGUCAAUAGCCGAAGC 71.2% 1182 UGGGAAUGGUUGGAGUAUU 70.0%
表2-2在表1-2所列甲型流感片段2(PB1)序列中以至少70%存在的保守19-mer序列
Seq ID 序列 百分比 1237 GAUCAUGAAGAUCUGUUCC 88.0%
1183 AUGAUGAUGGGCAUGUUCA 96.7% 1238 AGUGAAUGCACCAAAUCAU 88.0%
1184 UGAUGAUGGGCAUGUUCAA 96.7% 1239 GGAAUUCUUGAGGAUGAAC 88.0%
1185 AUCUGUUCCACCAUUGAAG 91.1% 1240 GGCCAUGGUGUCUAGGGCC 87.9%
1186 UCUGUUCCACCAUUGAAGA 91.1% 1241 AUCAUGAGGGAAUACAAGC 87.9%
1187 GAUCUGUUCCACCAUUGAA 90 9% 1242 CAUAGUGAAUGCACCAAAU 87.9%
1188 GAAGAUCUGUUCCACCAUU 90.8% 1243 CCUCCAUACAGCCAUGGAA 87.8%
1189 AAGAUCUGUUCCACCAUUG 90.7% 1244 AUACAAGCAGGAGUGGAUA 87.8%
1190 UGAAGAUCUGUUCCACCAU 90.1% 1245 CUCCAUACAGCCAUGGAAC 87.8%
1191 AGAUCUGUUCCACCAUUGA 90.7% 1246 AAUCAUGAGGGAAUACAAG 87.6%
1192 UGAUAAACAAUGACCUUGG 90.5% 1247 UCCAUACAGCCAUGGAACA 87.6%
1193 AUGAUAAACAAUGACCUUG 90.5% 1248 UACAAGCAGGAGUGGAUAG 87.6%
1194 CCAUACAGCCAUGGAACAG 89 2% 1249 UGUUCUCAAACAAAAUGGC 87.5%
1195 CAUACAGCCAUGGAACAGG 89.2% 1250 AUGUUCUCAAACAAAAUGG 87.5%
1196 GAGGCCAUGGUGUCUAGGG 89.1% 1251 UCACACAAAGAACAAUAGG 87.5%
1197 AGGCCAUGGUGUCUAGGGC 89.1% 1252 AUGGUCACACAAAGAACAA 87.4%
1198 GGAGGCCAUGGUGUCUAGG 89.0% 1253 UACACCAUGGACACAGUCA 87.4%
1199 UGGAGGCCAUGGUGUCUAG 88.9% 1254 UGGUCACACAAAGAACAAU 87.4%
1200 GAGAUCAUGAAGAUCUGUU 88.8% 1255 GUCACACAAAGAACAAUAG 87.4%
1201 ACCAAGAAAAUGGUCACAC 88 7% 1256 GGUCACACAAAGAACAAUA 87.4%
1202 CCAAGAAUAAUGGGUCACA 88.7% 1257 ACACCAUGGACACAGUCAA 87.4%
1203 UGACCAAGAAAAUGGUCAC 88.7% 1258 CCAGCGCAAAAUGCCAUAA 87.3%
1204 AUGACCAAGAAAAUGGUCA 88.7% 1259 GCAUGGUGGAGGCCAUGGU 87.3%
1205 CAUGAAGAUCUGUUCCACC 88 6% 1260 UUGAUGGACCACUACCUGA 87.3%
1206 AUGAAGAUCUGUUCCACCA 88.6% 1261 AGCAUGGUGGAGGCCAUGG 87.3%
1207 CAAGAAAAUGGUCACACAA 88 6% 1262 AAUGCACCAAAUCAUGAGG 87.2%
1208 UCAUGAGAAUCUGUUCCAC 88.5% 1263 AAUGUUCUCAAACAAAAUG 87.2%
1209 AUCAUGAAGAUCUGUUCCA 885% 1264 AUGCACCAAAUCAUGAGGG 87.2%
1210 GAUGGGCAUGUUCAACAUG 884% 1265 AUGGUGGAGGCCAUGGUGU 87.2%
1211 UGAUGGGCAUGUUCAACAU 88 4% 1266 GGUGGAGGCCAUGGUGUCU 87.2%
1212 AUGAGGGAAUACAAGCAGG 88.4% 1267 AUUGAUGGACCACUACCUG 87.2%
1213 ACAUGACCAAGAAAAUGGU 88.4% 1268 UGGUGGAGGCCAUGGUGUC 87.2%
1214 CAUGAGGGAAUACAAGCAG 88.4% 1269 AUAAUGUUCUCAAACAAAA 87.2%
1215 GAUGAUGGGCAUGUUCAAC 88.4% 1270 UAAUGUUCUCAAACAAAAU 87.2%
1216 AACAUGACCAAGAAAAUGG 88.4% 1271 GUGGAGGCCAUGGUGUCUA 87.1%
1217 AUGAUGGGCAUGUUCAACA 88.4% 1272 UGGCAAAUGUUGUGAGAAA 87.1%
1218 CAUGACAAGAAAAUUGGUC 88.3% 1273 GAAUGCACCAAAUCAUGAG 87.1%
1219 CUCAUAGUGAAUGCACCAA 88.3% 1274 AAUGGUCACACAAAGAACA 87.0%
1220 GACCAAGAAAAUGGUCACA 88.3% 1275 GAUCCUCCAUACAGCCAUG 86.9%
1221 UCAUAGUGAAUGCACCAAA 88.3% 1276 AUCCUCCAUACAGCCAUGG 86.9%
1222 AUGGGCAUGUUCAACAUGC 88.2% 1277 CAUGGUGGAGGCCAUGGUG 86.7%
1223 ACAACAUGACCAAGAAAAU 88.2% 1278 AAAUGGUCACACAAAGAAC 86.6%
1224 AUAGUGAAUGCACCAAAUC 88.2% 1279 GCAUGUUCAACAUGCUAAG 86.6%
1225 UAGUGAAUGCACCAAAUCA 88.2% 1280 AGGGAAUACAAGCAGGAGU 86.6%
1226 GCCAUGGUGUCUAGGGCCC 88.2% 1281 GGGCAUGUUCAACAUGCUA 86.6%
1227 GACAACAUGACCAAGAAAA 88.2% 1282 GGCAUGUUCAACAUGCUAA 86.6%
1228 UGGGCAUGUUCAACAUGCU 88.2% 1283 ACCAUGGACACAGUCAACA 86.6%
1229 CCAUGGUGUCUAGGGCCCG 88.2% 1284 GAUAUGCACAAACAGACUG 86.6%
1230 CAACAUGACCAAGAAAAUG 88.2% 1285 AAAAUGGUCACACAAAGAA 86.6%
1231 UGAAUGCACCAAAUCAUGA 88.1% 1286 CCAUGGACACAGUCAACAG 86.6%
1232 GUGAAUGCACCAAAUCAUG 88.0% 1287 GGAUAUGCACAAACAGACU 86.6%
1233 AGAUCAUGAAGAUCUGUUC 88.0% 1288 CACCAUGGACACAGUCAAC 86.5%
1234 UCAUGAGGGAAUACAAGCA 88.0% 1289 ACACAGUCAACAGAACACA 86.5%
1235 CAGCGCAAAAUGCCAUAAG 88.0% 1290 GACACAGUCAACAGAACAC 86.5%
1236 GAAUUCUUGAGGAUGAACA 88.0% 1291 GAGGGAAUACAAGCAGGAG 86.5%
1292 AUGUUCAACAUGCUAAGUA 86.4% 1351 AGAACAACAUGAUAAACAA 85.2%
1293 ACAUUCCCUUAUACUGGAG 864% 1352 GGGAAUUCUUGAGGAUGAA 85.2%
1294 UGUUCAACAUGCUAAGUAC 86.4% 1353 CAGGAGUGGAUAGAUUCUA 85.2%
1295 CAUUCCCUUAUACUGGAGA 86.4% 1354 AGUGGAUAUGCACAAACAG 85.2%
1296 AAGAAAAUGGUCACACAAA 86.3% 1355 AAGAACAACAUGAUAAACA 85.2%
1297 AAUACAAGCAGGAGUGGAU 86.3% 1356 AUAAAGAACAACAUGAUAA 85.2%
1298 AGAAAAUGGUCACACAAAG 863% 1357 UGGUGUCUAGGGCCCGGAU 85.0%
1299 GAAUACAAGCAGGAGUGGA 86.3% 1358 UGAUAAAGAACAACAUGAU 85.0%
1300 GGAAUACAAGCAGGAGUGG 86.3% 1359 AGCAGGAGUGGAUAGAUUC 85.0%
1301 UGAGGGAAUACAAGCAGGA 86.3% 1360 GUGAUAAAGAACAACAUGA 85.0%
1302 GGGAAUACAAGCAGGAGUG 86.3% 1361 GCAGGAGUGGAUAGAUUCU 85.0%
1303 GGACACAGUCAACAGAACA 86.2% 1362 GAUAAAGAACAACAUGAUA 85.0%
1304 AAGCAGGAGUGGAUAGAUU 86.2% 1363 AUGGUGUCUAGGGCCCGGA 85.0%
1305 UUGAGGAUGAACAGAUGUA 86.2% 1364 UGUCUAGGGCCCGGAUUGA 85.0%
1306 UGGACACAGUCAACAGAAC 86.2% 1365 CAUGGUGUCUAGGGCCCGG 84.9%
1307 AUGGACACAGUCAACAGAA 86.2% 1366 GAACAACAUGAUAAACAAU 84.9%
1308 AAAUCAUGAGGGAAUACAA 86.2% 1367 UGACUAAUUCACAAGACAC 84.8%
1309 CAAGCAGGAGUGGAUAGAU 86.2% 1368 GGAAGGCUAAUAGAUUUCC 84.8%
1310 CAAAUCAUGAGGGAAUACA 86.0% 1369 UUCCCUUAUACUGGAGAUC 84.8%
1311 CAUGGACACAGUCAACAGA 86.0% 1370 UCCCUUAUACUGGAGAUCC 84.8%
1312 CUUGAGGAUGAACAGAUGU 86.0% 1371 GAAGGCUAAUAGAUUUCCU 84.8%
1313 ACAAGCAGGAGUGGAUAGA 86.0% 1372 AUUGACUUCGAGUCUGGAC 84.8%
1314 CAUGUUCAACAUGCUAAGU 85.9% 1373 GGUGUCUAGGGCCCGGAUU 84.8%
1315 UAACAGUGAUAAAGAACAA 85.9% 1374 UAAUAGAUUUCCUCAAGGA 84.8%
1316 GAAAAUGGUCACACAAAGA 85.8% 1375 AACAGUGAUAAAGAACAAC 84.8%
1317 UGCACCAAAUCAUGAGGGA 85.7% 1376 GUGUCUAGGGCCCGGAUUG 84.8%
1318 GGCUAAUAGAUUUCCUCAA 85.7% 1377 ACUUCGAGUCUGGACGGAU 84.7%
1319 UCCUCCAUACAGCCAUGGA 85.6% 1378 ACAUGAUAAACAAUGACCU 84.7%
1320 CACCAAAUCAUGAGGGAAU 85.6% 1379 GUUCCAGCGCAAAAUGCCA 84.7%
1321 CCAAAUCAUGAGGGAAUAC 85.6% 1380 AUGACUAAUUCACAAGACA 84.7%
1322 ACCAAAUCAUGAGGGAAUA 85.6% 1381 AACAUGAUAAACAAUGACC 84.7%
1323 GCACCAAAUCAUGAGGGAA 85.6% 1382 CUAGGGCCCGGAUUGAUGC 84.7%
1324 GUAACAGUGAUAAAGAACA 85.6% 1383 GAUGACUAAUUCACAAGAC 84.7%
1325 UCUUGAGGAUGAACAGAUG 85.5% 1384 UCUAGGGCCCGGAUUGAUG 84.7%
1326 AAUUCUUGAGGAUGAACAG 85.5% 1385 AUUCCCUUAUACUGGAGAU 84.7%
1327 AGAUCCUCCAUACAGCCAU 85.5% 1386 UUGCAACUACACACUCCUG 84.6%
1328 UUCCAGCGCAAAAUGCCAU 85.5% 1387 UAAGAGACAACAUGACCAA 84.6%
1329 CUGGAGAUCCUCCAUACAG 85.5% 1388 UGCAACUACACACUCCUGG 84.6%
1330 ACAACAUGAUAAACAAUGA 85.5% 1389 CAACAUGAUAAACAAUGAC 84.6%
1331 GAGAUCCUCCAUACAGCCA 85.5% 1390 GUUGCAACUACACACUCCU 84.6%
1332 AACAACAUGAUAAACAAUG 85.5% 1391 CCAGCAACAGCCCAGAUGG 84.6%
1333 ACUGGAGAUCCUCCAUACA 85.5% 1392 CAGCAACAGCCCAGAUGGC 84.6%
1334 GGAGAUCCUCCAUACAGCC 85.5% 1393 GACUUCGAGUCUGGACGGA 84.5%
1335 UCCAGCGCAAAAUGCCAUA 85.5% 1394 AACUGGCAAAUGUUGUGAG 84.5%
1336 UUCUUGAGGAUGAACAGAU 85.5% 1395 GCAACUACACACUCCUGGA 84.5%
1337 AUUCUUGAGGAUGAACAGA 85.5% 1396 CUGGCAAAUGUUGUGAGAA 84.5%
1338 AGGGGAAUUCUUGAGGAUG 854% 1397 AAACUGGCAAAUGUUGUGA 84.5%
1339 UGGAGAUCCUCCAUACAGC 85.4% 1398 AAGUGGGAGCUAAUGGAUG 84.5%
1340 AUGAUGACUAAUUCACAAG 854% 1399 CUAAUAGAUUUCCUCAAGG 84.5%
1341 UGAUGACUAAUUCACAAGA 85.4% 1400 AGUGGGAGCUAAUGGAUGA 84.5%
1342 GUGGAUAUGCACAAACAGA 85.4% 1401 UAUGCACAAACAGACUGUG 84.3%
1343 UGGAUAUGCACAAACAGAC 85.3% 1402 CAACUACACACUCCUGGAU 84.3%
1344 AGUGAUAAAGAACAACAUG 85.3% 1403 ACUGGCAAAUGUUGUGAGA 84.3%
1345 ACAGUGAUAAAGAACAACA 85.3% 1404 AUGCACAAACAGACUGUGU 84.3%
1346 GGGGAAUUCUUGAGGAUGA 85.3% 1405 UGAAUGGAUGUCAAUCCGA 84.2%
1347 UAAAGAACAACAUGAUAAA 85.3% 1406 GAAUGGAUGUCAAUCCGAC 84.2%
1348 CAGUGAUAAAGAACAACAU 85.3% 1407 GAGUCUGGACGGAUUAAGA 84.2%
1349 UUUGACUUCGAUCUGGACG 85.3% 1408 UGACUUCGAGUCUGGACGG 84.2%
1350 AAAGAACAACAUGAUAAAC 85.2% 1409 GUCUAGGGCCCGGAUUGAU 84.1%
1410 AACUACACACUCCUGGAUU 84.1% 1469 GGCCCGGAUUGAUGCCAGA 83.4%
1411 UUGAAUGGAUGUCAAUCCG 84.1% 1470 AUACUGGAGAUCCUCCAUA 83.4%
1412 GAGACAACAUGACCAAGAA 84.1% 1471 UUACAUAUAUCACAAAAAA 83.3%
1413 AGGCUAAUAGAUUUCCUCA 84.1% 1472 CAACAGCCCAGAUGGCUCU 83.3%
1414 CGCAAAAUGCCAUAAGCAC 84.1% 1473 AGCCAUGGAACAGGAACAG 83.3%
1415 AGUCUGGACGGAUUAAGAA 84.1% 1474 GCCAUGGAACAGGAACAGG 83.3%
1416 AUAUGCACAAACAGACUGU 84.1% 1475 UUAUACUGGAGAUCCUCCA 83.3%
1417 UUUGAAUGGAUGUCAAUCC 84.0% 1476 CAAACUGGCAAAUGUUGUG 83.3%
1418 GCGCAAAAUGCCAUAAGCA 84.0% 1477 UACUGGAGAUCCUCCAUAC 83.3%
1419 CUACACACUCCUGGAUUCC 84.0% 1478 GAGUAACAGUGAUAAAGAA 83.3%
1420 UUCGAGUCUGGACGGAUUA 84.0% 1479 CUUAUACUGGAGAUCCUCC 83.3%
1421 UCGAGUCUGGACGGAUUAA 84.0% 1480 CCUUAUACUGGAGAUCCUC 83.3%
1422 AAGGCUAAUAGAUUUCCUC 84.0% 1481 GAAUUGACUUCGAGUCUGG 83.3%
1423 AGAGACAACAUGACCAAGA 84.0% 1482 AAGAAGUCCUAUAUAAAUA 83.3%
1424 CGAGUCUGGACGGAUUAAG 84.0% 1483 GCAACAGCCCAGAUGGCUC 83.3%
1425 ACUACACACUCCUGGAUUC 84.0% 1484 AUUUGAAUGGAUGUCAAUC 83.3%
1426 AGAGUAAGAGACAACAUGA 83.9% 1485 GCCAGAAUUGACUUCGAGU 83.2%
1427 AGCGCAAAAUGCCAUAAGC 83.9% 1486 CCAGAAUUGACUUCGAGUC 83.2%
1428 AGUAAGAGACAACAUGACC 83.9% 1487 CAAAGGGGAAUUCUUGAGG 83.2%
1429 GUAAGAGACAACAUGACCA 83.9% 1488 CAGAAUUGACUUCGAGUCU 83.2%
1430 UCAAUGGAUAAAGAGGAAA 83.9% 1489 AAAGGGGAAUUCUUGAGGA 83.2%
1431 AAGAGACAACAUGACCAAG 83.9% 1490 UCAGCUGAUAUGAGCAUUG 83.2%
1432 CAAUGGAUAAAGAGGAAAU 83.9% 1491 CCCGGAUUGAUGCCAGAAU 83.2%
1433 GAGUAAGAGAGCACAUGAC 83.9% 1492 GAGUGGAUAGAUUCUACAG 83.2%
1434 GCCAAAGGGGAAUUCUUGA 83.8% 1493 AGUAACAGUGAUAAAGAAC 83.2%
1435 AGACAACAUGACCAAGAAA 83.8% 1494 UACAUAUAUCACAAAAAAU 83.2%
1436 CUUCGAGUCUGGACGGAUU 83.8% 1495 CAGCUGAUAUGAGCAUUGG 83.2%
1437 AUGAUUACAUAUAUCACAA 83.8% 1496 GGAGUGGAUAGAUUCUACA 83.2%
1438 AGCCAAAGGGGAAUUCUUG 83.8% 1497 AGAAUUGACUUCGAGUCUG 83.2%
1439 GGACCAGCAACAGCCCAGA 83.7% 1498 CGAUGAUUACAUAUAUCAC 83.1%
1440 GACCAGCAACAGCCCAGAU 83.7% 1499 AAGGGGAAUUCUUGAGGAU 83.1%
1441 UGAUUACAUAUAUCACAAA 83.7% 1500 GAUUUCCUCAAGGAUGUGA 83.1%
1442 AUAGAUUUCCUCAAGGAUG 83.7% 1501 CUGAUAUGAGCAUUGGAGU 83.1%
1443 ACCAGCAACAGCCCAGAUG 83.7% 1502 GCUGAUAUGAGCAUUGGAG 83.1%
1444 ACAUAUAUCACAAAAAAUC 83.7% 1503 GCCCGGAUUGAUGCCAGAA 83.1%
1445 UAGAUUUCCUCAAGGAUGU 83.7% 1504 AAUAGAUUUCCUCAAGGAU 83.0%
1446 CAUAUAUCACAAAAAAUCA 83.7% 1505 AGGCCAAACUGGCAAAUGU 83.0%
1447 AUUACAUAUAUCACAAAAA 83.6% 1506 UGGAGUAACAGUGAUAAAG 83.0%
1448 GAUUACAUAUAUCACAAAA 83.6% 1507 UGAGCAUUGGAGUAACAGU 83.0%
1449 CCAAACUGGCAAAUGUUGU 83.6% 1508 CCGGAUUGAUGCCAGAAUU 83.0%
1450 AUUGAGAAAAUAAGGCCUC 83.6% 1509 AUGAGCAUUGGAGUAACAG 83.0%
1451 UUGAGAAAAUAAGGCCUCU 83.6% 1510 AUUUCCUCAAGGAUGUGAU 83.0%
1452 AUUGGAGUAACAGUGAUAA 83.6% 1511 GCGAUGAUUACAUAUAUCA 83.0%
1453 AGCUUGAACAGUCUGGACU 83.6% 1512 AAGGCCAAACUGGCAAAUG 83.0%
1454 GCCAAACUGGCAAAUGUUG 83.6% 1513 AGCUGAUAUGAGCAUUGGA 83.0%
1455 UUGGAGUAACAGUGAUAAA 83.6% 1514 CAUUGGAGUAACAGUGAUA 82.9%
1456 AAGCUUGAACAGUCUGGAC 83.6% 1515 AGAUUUCCUCAAGGAUGUG 82.9%
1457 GCUAAUAGAUU田CUCAAG 83.5% 1516 AGCAACAGCCCAGAUGGCU 82.9%
1458 AGGAGUGGAUAGAUUCUAC 83.5% 1517 GGCCAAACUGGCAAAUGUU 82.9%
1459 CAUGAUAAACAAUGACCUU 83.5% 1518 GCAUUGGAGUAACAGUGAU 82.9%
1460 ACCUUGGACCAGCAACAGC 83.4% 1519 AGCAUUGAGUAACUAGUGA 82.9%
1461 GACCUUGGACCAGCAACAG 83.4% 1520 CCCUUAUACUGGAGAUCCU 82.9%
1462 AAGAUUAUUGAGAAAAUAA 83.4% 1521 GGAUUGAUGCCAGAAUUGA 82.7%
1463 AGGGCCCGGAUUGAUGCCA 83.4% 1522 CGGAUUGAUGCCAGAAUUG 82.7%
1464 GGAGUAACAGUGAUAAAGA 83.4% 1523 AGAAGGCCAAACUGGCAAA 82.7%
1465 GGGCCCGGAUUGAUGCCAG 83.4% 1524 GAUGAUUACAUAUAUCACA 82.7%
1466 UUAGGGCCCGGAUUGAUCC 83.4% 1525 ACAGCCAUGGAACAGGAAC 82.7%
1467 UAUACUGGAGAUCCUCCAU 83.4% 1526 AAGAAGGCCAAACUGGCAA 82.7%
1468 AGAAAAUUGAGAAAAUAAG 83.4% 1527 GAAGGCCAAACUGGCAAAU 82.7%
1528 AUAUGAGCAUUCGAGUAAC 82.7% 1587 GAAAAUUGAGAAAAUAAGG 81.4%
1529 UAUGAGCAUUGGAGUAACA 82.7% 1588 CAAGCCAAAGGGGAAUUCU 81.4%
1530 UACAGCCAUGGAACAGGAA 82.7% 1589 ACAAACAGACUGUGUCCUG 81.46
1531 CUUGGACCAGCAACAGCCC 82.7% 1590 ACAAGCCAAAGGGGAAUUC 81.4%
1532 AUUGAUGCCAGAAUUGACU 82.7% 1591 CACAAACAGACUGUGUCCU 81.4%
1533 GAGCAUUGGAGUAACAGUG 82.7% 1592 AAGCCAAAGGGGAAUUCUU 81.3%
1534 UUGGACCAGCAACAGCCCA 82.7% 1593 CCAAUUGAUGGACCACUAC 81.3%
1535 AUGCCAGAAUUGACUUCGA 82.7% 1594 AACAAUGACCUUGGACCAG 81.3%
1536 UUGAUGCCAGAAUUGACUU 82.7% 1595 UGGAUUCCCAAGAGGAACC 81.3%
1537 GAUAUGAGCAUUGGAGUAA 82.7% 1596 GCACAAACAGACUGUGUCC 81.3%
1538 GAUGCCAGAAUUGACUUCG 82.7% 1597 ACAAUGACCUUGGACCAGC 81.3%
1539 AAUUGACUUCGAGUCUGGA 82.6% 1598 CAAUUGAUGGACCACUACC 81.3%
1540 UGAUAUGAGCAUUGGAGUA 82.6% 1599 AAACAAUGACCUUGGACCA 81.3%
1541 AUACAGCCAUGGAACAGGA 82.6% 1600 UCCUUGAAGAAUCCCACCC 81.3%
1542 CAGCCAUGGAACAGGAACA 82.6% 1601 UGCACAAACAGACUGUGUC 81.3%
1543 UGAUGCCAGAAUUGACUUC 82.5% 1602 UUCCUUGAAGAAUCCCACC 81.3%
1544 GAUUGAUGCCAGAAUUGAC 82.5% 1603 AAUAAGGCCUCUUCUAAUA 81.3%
1545 UGGACCAGCAACAGCCCAG 82.5% 1604 GGAUUCCCAAGAGGAACCG 81.3%
1546 GUGAAUCUUGGGCAAAAGA 82.4% 1605 UAUCACAAAAAAUCAACCU 81.2%
1547 UGAUGGACCACUACCUGAG 82.4% 1606 UUGAAGAAUCCCACCCAGG 812%
1548 UGCCAGAAUUGCUUUCGAG 82.4% 1607 CUUGAAGAAUCCCACCCAG 81.2%
1549 UGGCGAUGAUUACAUAUAU 82.4% 1608 CCUGGAUUCCCAAGAGGAA 81.2%
1550 GUGGGAGCUAAUGGAUGAG 82.3% 1609 ACCACAUUCCCUUAUACUG 81.2%
1551 GGCGAUGAUUACAUAUAUC 82.3% 1610 CCCAAUUGAUGGACCACUA 81.2%
1552 UAAAGUGGGAGCUAAUGGA 82.3% 1611 AAUUGAGAAAAUAAGGCCU 81.2%
1553 AAAGUGGGAGCUAAUGGAU 82.2% 1612 UCCUGGAUUCCCAAGAGGA 81.2%
1554 UUGAAUUCACAAGCUUUUU 82.0% 1613 CCACAUUCCCUUAUACUGG 81.2%
1555 UUUGAAUUCACAAGCUUUU 82.0% 1614 CCUUGAAGAAUCCCACCCA 81.0%
1556 AAAAUUGAGAAAAUAAGGC 81.8% 1615 AACACAAGCCAAAGGGGAA 81.0%
1557 CCUUGGACCAGCAACAGCC 81.8% 1616 AUGACCUUGGACCAGCAAC 81.0%
1558 UAAACAAUGACCUUGGACC 81.8% 1617 UAAGGCCUCUUCUAAUAGA 81.0%
1559 GAUGGACCACUACCUGAGG 81.8% 1618 AAUGACCUUGGACCAGCAA 81.0%
1560 AAAUUGAGAAAAUAAGGCC 81.8% 1619 ACACAAGCCAAAGGGGAAU 81.0%
1561 AUUUGAAUUCACAAGCUUU 81.7% 1620 GAUCAUUCGAGCUAAAGAA 81.0%
1562 CCAAAGGGGAAUUCUUGAG 81.7% 1621 UGACCUUGGACCAGCAACA 81.0%
1563 CAUUUGAAUUCACAAGCUU 81.7% 1622 CUCCUGGAUUCCCAAGAGG 80.9%
1564 AUGGACCACUACCUGAGGA 81.7% 1623 CUGGAUUCCCAAGAGGAAC 80.9%
1565 ACAUUUGAAUUCACAAGCU 81.7% 1624 CAAUGACCUUGGACCAGCA 80.9%
1566 ACACACUCCUGGAUUCCCA 81.6% 1625 CACAAGCCAAAGGGGAAUU 80.9%
1567 CACACUCCUGGAUUCCCAA 81.6% 1626 UCAUUCGAGCUAAAGAAGC 80.8%
1568 ACACUCCCUGGAUUCCAAG 81.5% 1627 AUAAGGCCUCUUCUAAUAG 80.8%
1569 GAUAAACAAUGACCUUGGA 81.5% 1628 CAUUCGAGCUAAAGAAGCU 80.8%
1570 AUAUCACAAAAAAUCAACC 81.5% 1629 AUCAUUCGAGCUAAAGAAG 80.8%
1571 CACUCCUGGAUUCCCAAGA 81.5% 1630 CAAAAUGCCAUAAGCACCA 80.7%
1572 GAGGAGACACACAAAUUCA 81.5% 1631 AAAUGCCAUAAGCACCACA 80.6%
1573 ACUCCUGGAUUCCCAAGAG 81.5% 1632 AAAAUGCCAUAAGCACCAC 80.6%
1574 AGAUCAUUCGAGCUAAAGA 81.5% 1633 GCAAAAUGCCAUAAGCACC 80.6%
1575 UACACACUCCUGGAUUCCC 81.5% 1634 AUGCCAUAAGCACCACAUU 80.6%
1576 AGAGGAGACACACAAAUUC 81.5% 1635 AAUGCCAUAAGCACCACAU 80.6%
1577 UAUAUCACAAAAAAUCAAC 81.5% 1636 UAAGCACCACAUUCCCUUA 80.4%
1578 AUCACAAAAAAUCAACCUG 81.5% 1637 AUAAGCACCACAUUCCCUU 80.4%
1579 AUAUAUCACAAAAAAUCAA 81.5% 1638 UUCAACAUGCUAAGUACGG 80.3%
1580 AUAAACAAUGACCUUGGAC 81.5% 1639 UUCCUCAAGGAUGUGAUGG 80.3%
1581 UGUUCGAGAAAUUUUUCCC 81.5% 1640 GUUCAACAUGCUAAGUACG 80.3%
1582 AACCCAAUUGAUGGACCAC 81.5% 1641 UUUCCUCAAGGAUGUGAUG 80.3%
1583 UCACAAAAAAUCAACCUGA 81.5% 1642 GAAUCAAUGGAUAAAGAGG 80.3%
1584 ACCCAAUUGAUGGACCACU 81.4% 1643 UCAACAUGCUAAGUACGGU 80.3%
1585 CAAACAGACUGUGUCCUGG 81.4% 1644 CCAAGAGGAACCGCUCUAU 80.3%
1586 AAACAGACACUGUCCUGGA 81.4% 1645 CUGAGAUCAUGAAGAUCUG 80.2%
1646 CCCAAGAGGAACCGCUCUA 80.2% 1705 UGAUGGAAUCAAUGGAUAA 79.1%
1647 UGCCAUAAGCACCACAUUC 80.2% 1706 CUGCUUAAAGUGGGAGCUA 79.0%
1648 UCCCAAGAGGAACCGCUCU 80.2% 1707 UGGAAUCAAUGGAUAAAGA 79.0%
1649 GCCAUAAGCACCACAUUCC 80.2% 1708 AAACAAGGGUGGACAAACU 78.9%
1650 UUCCCAAGAGGAACCGCUC 80.2% 1709 GGUUCAGAAACAUCCUGAG 78.9%
1651 AAUCAAUGGAUAAAGAGGA 80.2% 1710 CAACUCAACCCAAUUGAUG 78.9%
1652 UUAAAGUGGGAGCUAAUGG 80.2% 1711 UGGUUCAGAAACAUCCUGA 78.9%
1653 CCAUAAGCACCACAUUCCC 80..2% 1712 AACUCAACCCAAUUGAUGG 78.9%
1654 CAUAAGCACCACAUUCCCU 80.2% 1713 AUUCGAGCUAAAGAAGCUG 78.8%
1655 AUUCCCAAGAGGAACCGCU 80.1% 1714 CAAACAAGGGUGGACAAAC 78.8%
1656 GAUUCCCAAGAGGAACCGC 80.1% 1715 AUCAAUGGAUAAAGAGGAA 78.8%
1657 UCCUCAAGGAUGUGAUGGA 80.0% 1716 AUGGAAUCAAUGGAUAAAG 78.8%
1658 UGAGAAAAUAAGGCCUCUU 80.0% 1717 GUUCAGAAACAUCCUGAGC 78.7%
1659 AAGAGGAACCGCUCUAUUC 80.0% 1718 CAACAUGCUAAGUACGGUU 78.7%
1660 GAGACACACAAAUUCAGAC 80.0% 1719 UUCAGAAACAUCCUGAGCA 78.6%
1661 CAAGAGGAACCGCUCUAUU 80.0% 1720 GGAAUCAAUGGAUAAAGAG 78.6%
1662 GGAGACACAC出AUUCAGA 80 0% 1721 UCAGAAACAUCCUGAGCAU 78.6%
1663 UGAGAUCAUGAAGAUCUGU 80.0% 1722 CAACUGCAUUAGCCAACAC 78.5%
1664 GAGCUAAAGAAGCUGUGGG 80.0% 1723 GCAACUGCAUUAGCCAACA 78.5%
1665 AGAGGAACCGCUCUAUUCU 80.0% 1724 AAGUGGAUAUGCACAAACA 78.5%
1666 AGCUAAAGAAGCUGUGGGA 79.9% 1725 CAAGUGGAUAUGCACAAAC 78.5%
1667 AGAAAAUAAGGCCUCUUCU 79.9% 1726 CCAAGUGGAUAUGCACAAA 78.5%
1668 AAAAUAAGGCCUCUUCUAA 79.9% 1727 AGAAACAUCCUGAGCAUCG 78.3%
1669 CACAUUCCCUUAUACUGGA 79.9% 1728 ACAUGCUAAGUACGGUUUU 78.3%
1670 GAAGUCUGCUUAAAGUGGG 79.8% 1729 GAAACAUCCUGAGCAUCGC 78.3%
1671 AAAUAAGGCCUCUUCUAAU 79.8% 1730 AACAUGCUAAGUACGGUUU 78.3%
1672 GAGAAAAUAAGGCCUCUUC 79.8% 1731 ACACACAAAUUCAGACGAG 78.2%
1673 AGUCUGCUUAAAGUGGGAG 79.7% 1732 GCAUCACAUUCCCUUAUAC 78.2%
1674 CCACUACCUGAGGAUAAUG 79.7% 1733 GCUAAUUUUAGCAUGGAGC 78.2%
1675 AAGUCUGCUUAAGUGGGGA 79 7% 1734 ACAUCCUGAGCAUCGCACC 78.2%
1676 AUGUGAUGGAAUCAAUGGA 79.6% 1735 AAUUGAUGGACCACUACCU 78.2%
1677 GAUGUGAUGGAAUCAAUGG 79.6% 1736 CAGAAACAUCCUGAGCAUC 78.2%
1678 GAAAAUAAGGCUCUUUCUA 79.6% 1737 AGCACCACAUUCCCUUAUA 78.2%
1679 CACUACCUGAGGAUAAUGA 79.6% 1738 GACACACAAAUUCAGACGA 78.2%
1680 UUCGAGCUAAAGAAGCUGU 79.4% 1739 AACAUCCUGAGCAUCGCAC 78.2%
1681 GGACCACUACCUGAGGAUA 79.4% 1740 AAGCACCACAUUCCCUUAU 78.2%
1682 UCGAGCUAAAGAAGCUGUG 79.4% 1741 CUAAUUUUAGCAUGGAGCU 78.2%
1683 ACCACUACCUGAGGAUAAU 79.4% 1742 AAACAUCCUGAGCAUCGCA 78.1%
1684 GACCACUACCUGAGGAUAA 79.4% 1743 CACCACAUUCCCUUAUACU 78.0%
1685 CGAGCUAAAGAAGCUGUGG 79.4% 1744 GAUGGAAUCAAUGGAUAAA 78.0%
1686 UCUGCUUAAAGUGGGAGCU 79.4% 1745 AGACACACAAAUUCAGACG 78.0%
1687 UGGACCACUACCUGAGGAU 79.4% 1746 AAGGAUGUGAUGGAAUCAA 77.7%
1688 GUCUGCUUAAAGUGGGAGC 79.4% 1747 AGGAUGUGAUGGAAUCAAU 77.7%
1689 GAAGCUCCGAACACAAAUA 79.3% 1748 UGGGAUGGGCUCCAAUCCU 77.6%
1690 AUGAAGCUCCGAACACAAA 79.3% 1749 AUGCCGUUGCAACUACACA 77.6%
1691 CCAGUUUUGGAGUGUCUGG 79.3% 1750 UGAUGCCGUUGCAACUACA 77.6%
1692 CCCAGUUUUGGAGUGUCUG 79.3% 1751 GUGGGAUGGGCUCCAAUCC 77.6%
1693 UGAAGCUCCGAACACAAAU 79.3% 1752 GAUGCCGUUGCAACUACAC 77.6%
1694 CAGAAAUGCUAGCAAGCAU 79.2% 1753 AUGAUGCCGUUGCAACUAC 77.6%
1695 GUGAUGGAAUCAAUGGAUA 79.2% 1754 UAUGAUGCCGUUGCAACUA 77.6%
1696 GCAGAAAUGCUAGCAAGCA 79.2% 1755 GGGAUGGGCUCCAAUCCUC 77.6%
1697 UGUGAUGGAAUCAAUGGAU 79.2% 1756 AAUGGAUGUCAAUCCGACU 77.5%
1698 UGCUUAAAGUGGGAGCUAA 79.2% 1757 GGAUGUGAUGGAAUCAAUG 77.5%
1699 GGUGGGAUGGGCUCCAAUC 79.2% 1758 GAUUUGUGGCUAAUUUUAG 77.5%
1700 AAGCUCCGAACACAAAUAC 79.2% 1759 GGAUUUGUGGCUAAUUUUA 77.5%
1701 UGGUGGGAUGGGCUCCAAU 79.2% 1760 GGCACAGCAUCAUUGAGCC 77.3%
1702 GCUUAAAGUGGGAGCUAAU 79.2% 1761 GUGGCUAAUUUUAGCAUGG 77.3%
1703 AGCUCCGAACACAAAUACC 79.2% 1762 UUUGUGGCUAAUUUUAGCA 77.3%
1704 CUUAAAGUGGGAGCUAAUG 79.2% 1763 GCACAGCAUCAUUGAGCCC 77.3%
1764 UGGCUAAUUUUAGCAUGGA 77.3% 1823 CUUGAACAGUCUGGACUUC 76.4%
1765 GGCUAAUUUUAGCAUGGAG 77.3% 1824 CCACCAUUGAAGAACUCAG 76.4%
1766 UGGAUUUGUGGCUAAUUUU 77.3% 1825 AGUGGAUAGAUUCUACAGG 76.4%
1767 UAUGGAUUUGUGGCUAAUU 77.3% 1826 AGCUUUCUUUCACAAUCAC 76.4%
1768 UGUGGCUAAUUUUAGCAUG 77.3% 1827 UUGAACAGUCUGGACUUCC 76.4%
1769 AUGGAUUUGUGGCUAAUUU 77.3% 1828 UUGCAACACCCGGGAUGCA 76.3%
1770 UUGUGGCUAAUUUUAGCAU 77.3% 1829 UUCAACAAACAAGGGUGGA 76.3%
1771 CAAGGAUGUGAUGGAAUCA 77.2% 1830 AUUGCAACACCCGGGAUGC 76.3%
1772 ACUACCUGAGGAUAAUGAG 77.2% 1831 AUGUCAAUCCGACUCUACU 76.3%
1773 CUCAAGGAUGUGAUGGAAU 77.2% 1832 UGCCCUCAUAGUGAAUGCA 76.1%
1774 GCCCUCAUAGUGAAUGCAC 77.2% 1833 UGGAUGUCAAUCCGACUCU 76.1%
1775 CUACCUGAGGAUAAUGAGC 77.2% 1834 UUGCCCUCAUAGUGAAUGC 76.1%
1776 UCAAGGAUGUGGAUGAAUC 77.2% 1835 GCAACACCCGGGAUGCAAA 76.1%
1777 AUAUGAUGCCGUUGCAACU 77.1% 1836 CAACACCCGGGAUGCAAAU 76.1%
1778 GAAUAUGAUGCCGUUGCAA 77.1% 1837 UGCAACACCCGGGAUGCAA 76.1%
1779 UACCUGAGGAUAAUGAGCC 77.1% 1838 UUUGCCCUCAUAGUGAAUG 76.0%
1780 AAUAUGAUGCCGUUGCAAC 77.1% 1839 AUGGAUGUCAAUCCGACUC 76.0%
1781 CCCUCAUAGUGAAUGCACC 77.1% 1840 ACAGAACACACCAAUAUUC 76.0%
1782 AUUUGUGGCUAAUUUUAGC 77.1% 1841 CAGAACACACCAAUAUUCA 76.0%
1783 UGGAAUAUGAUGCCGUUGC 77.0% 1842 AACAGAACACACCAAUAUU 76.0%
1784 AGAACACACCAAUAUUCAG 77.0% 1843 AGGAUGAACAGAUGUACCA 75.9%
1785 GGAAUAUGAUGCCGUUGCA 77.0% 1844 AUUUUGCCCUCAUAGUGAA 75.9%
1786 CAACAAACAAGGGUGGACA 77.0% 1845 UGAAGAACUCAGACGGCAA 75.9%
1787 CCUCAUAGUGAAUGCACCA 77.0% 1846 GCUUGAACAGUCUGGACUU 75.9%
1788 CAGCAUCAUUGAGCCCUGG 77.0% 1847 GAAGAACUCAGACGGCAAA 75.9%
1789 ACAGCAUCAUUGAGCCCUG 76.9% 1848 UGAGGAUGAACAGAUGUAC 75.9%
1790 CACAGCAUCAUUGAGCCCU 76.9% 1849 UUUUGCCCUCAUAGUGAAU 75.9%
1791 AUGGAAAUAUAUGCCGUUG 76.9% 1850 GAUGUCAAUCCGACUCUAC 75.9%
1792 AGAAGUCCUAUAUAAAUAA 76.8% 1851 GAUUUUGCCCUCAUAGUGA 75.9%
1793 CUGUUCCACCAUUGAAGAA 76.8% 1852 GGAUGUCAAUCCGACUCUA 75.9%
1794 AAGUACGGUUUUAGGAGUC 76.8% 1853 GAGGAUGAACAGAUGUACC 75.9%
1795 GAACACACCAAUAUUCAGA 76.8% 1854 UGAGCAAAAAGAAGUCCUA 75.8%
1796 CUCAGACGGCAAAAAUAAU 76.8% 1855 AUGAGCAAAAAGAAGUCCU 75.8%
1797 AGUACGGUUUUAGGAGUCU 76.8% 1856 AAGAACUCAGACGGCAAAA 75.8%
1798 UGCUAAGUACGGUUUUAGG 76.8% 1857 GUUCAACAAACAAGGGUGG 75.7%
1799 GUACGGUUUUAGGAGUCUC 76.8% 1858 UCAACAGAACACACCAAUA 75.7%
1800 CAUGCUAAGUACGGUUUUA 76.8% 1859 GUCAACAGAACACACCAAU 75.7%
1801 UAAGUCGGUUUUUAGGAGU 76.8% 1860 CAACAGAACACACCAAUAU 75.7%
1802 UCCACCAUUGAAGAACUCA 76.8% 1861 GCUAUUGCAACACCCGGGA 75.6%
1803 AGGAGACACACAAAUUCAG 76.8% 1862 UUCACAAGCUUUUUUUAUC 75.6%
1804 AUGCUAAGUACGGUUUUAG 76.8% 1863 CUAUUGCAACACCCGGGAU 75.6%
1805 AGGUUCCAGCGCAAAAUGC 76.7% 1864 AAUUCACAAGCUUUUUUUA 75.6%
1806 AAGGUUCCAGCGCAAAAUG 76.7% 1865 UGAAUUCACAAGCUUUUUU 75.6%
1807 AAAGGUUCCAGCGCAAAAU 76.7% 1866 GAAUUCACAAGCUUUUUUU 75.6%
1808 UAAAGGUUCCAGCGCAAAA 76.7% 1867 UAUUGCAACACCCGGGAUG 75.6%
1809 UGUUCCACCAUUGAAGAAC 76.6% 1868 UCACAAGCUUUUUUUAUCG 75.6%
1810 GUUCCACCAUUGAAGAACU 76.6% 1869 GUUCUCAAACAAAAUGGCA 75.5%
1811 CAUUGAAGAACUCAGACGG 76.6% 1870 UUCUCAAACAAAAUGGCAA 75.5%
1812 CUAAGUACGGUUUUAGGAG 76.6% 1871 AGAAGGGCUAUUGCAACAC 75.5%
1813 CCAUUGAAGAACUCAGACG 76.6% 1872 GAAGUUUUUAGAUCGAAUG 75.5%
1814 ACCAUUGAAGAACUCAGAC 76.6% 1873 UGCCUUGAAACAAUGGAAG 75.5%
1815 GCUAAGUACGGUUUUAGGA 76.6% 1874 AGAACUCAGACGGCAAAAA 75.5%
1816 UUCCACCAUUGAAGAACUC 76.6% 1875 AUUCACAAGCUUUUUUUAU 75.5%
1817 CACCAUUGAAGAACUCAGA 76.6% 1876 GAAGGGCUAUUGCAACACC 75.5%
1818 AUUGAAGAACUCAGACGGC 76.5% 1877 UCUCAAACAAAAUGGCAAG 75.4%
1819 GUGGAUAGAUUCUACAGGA 76.5% 1878 UACAUGUUCGAGAGUAAGA 75.3%
1820 GGUUCCAGCGCAAAAUGCC 76.5% 1879 UCUGAGAUCAUGAAGAUCU 75.3%
1821 UUGAAGAACUCAGACGGCA 76.5% 1880 AAGAAGGGCUAUUGCAACA 75.3%
1822 GAGCUUUCUUUCACAAUCA 76.4% 1881 ACAUGUUCGAGAGUAAGAG 75.3%
1882 GAAAAGGAUACAUGUUCGA 75.3% 1941 CAACACACUUUCAAAGAAA 74.4%
1883 GGAAAAGGAUACAUGUUCG 75.3% 1942 CCAUAGAAGUUUUUAGAUC 74.4%
1884 AAAGAAGGGCUAUUGCAAC 75.2% 1943 GCCAGCCCAUGGUCCAGCC 74.3%
1885 AAAAGAAGGGCUAUUGCAA 75.2% 1944 AAACUGGGGCACCCCAACU 74.3%
1886 GAACUCAGACGGCAAAAAU 75.2% 1945 CAGAAACUGGGGCACCCCA 74.3%
1887 UCAACAAACAAGGGUGGAC 75.1% 1946 AGAAACUGGGGCACCCCAA 74.3%
1888 CCUGAGUGGUUCAGAAACA 75.1% 1947 ACAGAAACUGGGGCACCCC 74.3%
1889 CAAACAAAAUGGCAAGACU 75.1% 1948 AAAGAAGUCCUAUAUAAAU 74.3%
1890 CUGAGUGGUUCAGAAACAU 75.1% 1949 CGAUGACCAAAGAUGCAGA 74.3%
1891 UCAAACAAAAUGGCAAGAC 75.0% 1950 ACGAUGACCAAAGAUGCAG 74.3%
1892 AGAAGUUUUUAGAUCGAAU 75.0% 1951 GAAACUGGGGCACCCCAAC 74.3%
1893 AACUCAACGGCAAAAAAUA 75.0% 1952 CCAGCCCAUGGUCCAGCCA 74.3%
1894 AUAGAAGUUUUUAGAUCGA 75.0% 1953 GAGAAGAUCAUUCGAGCUA 74.3%
1895 GGAUACAUGUUCGAGAGUA 75.0% 1954 AGGAUACAUGUUCGAGAGU 74.2%
1896 UAGAAGUUUUUAGAUCGAA 75.0% 1955 GCCUUGAAACAAUGGAAGU 74.2%
1897 CUCAAACAAAAUGGCAAGA 75.0% 1956 AAGGAUACAUGUUCGAGAG 74.2%
1898 AGAAGAUCAUUCGAGCUAA 75.0% 1957 AUAAUGAGCCAAGUGGAUA 74.2%
1899 AUACAUGUUCGAGAGUAAG 74.9% 1958 AAAGGAUACAUGUUCGAGA 74.2%
1900 AUCAACAUGAGCAAAAAGA 74.9% 1959 GUAAGAGAAUGAAGCUCCG 74.1%
1901 UCAACAUGAGCAAAAAGAA 74.9% 1960 ACAUGAGCAAAAAGAAGUC 74.1%
1902 AGUGGUUCAGAAACAUCCU 74.9% 1961 CCGUUGCAACUACACACUC 74.1%
1903 GAUACAUGUUCGAGAGUAA 74.9% 1962 GAGCCAAGUGGAUAUGCAC 74.1%
1904 GGAAUCAACAUGAGCAAAA 74.9% 1963 AAGUUUUUAGAUCGAAUGG 74.1%
1905 GAGUGGUUCAGAAACAUCC 74.9% 1964 CUGGGGCACCCCAACUCAA 74.1%
1906 GUGGUUCAGAAACAUCCUG 74.9% 1965 AACUGGGGCACCCCAACUC 74.1%
1907 AAAAGAAGUCCUAUAUAAA 74.8% 1966 AUGAGCCAAGUGGAUAUGC 74.1%
1908 UGAGUGGUUCAGAAACAUC 74.8% 1967 AACAUGAGCAAAAAGAAGU 74.1%
1909 GAAUCAACAUGAGCAAAAA 74.8% 1968 CAGUCAACAGAACACACCA 74.1%
1910 CCUCAAGGAUGUGAUGGAA 74.8% 1969 UUUCAAAGAAAAAGGAGAG 74.1%
1911 AAAAAGAAGUCCUAUAUAA 74.8% 1970 UGAGCCAAGUGGAUAUGCA 74.1%
1912 UAACAACACAGUUUCAAAG 74.7% 1971 UGGGAUCAAACCCAAUCAA 74.1%
1913 AAUCAACAUGAGCAAAAAG 74.7% 1972 ACUGGGGCACCCCAACUCA 74.1%
1914 UUUCUUUCACAAUCACUGG 74.7% 1973 GCCGUUGCAACUACACACU 74.1%
1915 AUAACAACACACUUUCAAA 74.5% 1974 AGCCAAGUGGAUAUGCACA 74.1%
1916 UGACAUUGAACACGAUGAC 74.5% 1975 GCCAACGUGGAUAUGCCAA 74.1%
1917 GAAGAUCAUUCGAGCUAAA 74.5% 1976 AGUAAGAGAAUGAAGCUCC 74.1%
1918 ACUCAACCCAAUUGAUGGA 74.5% 1977 UUCAAAGAAAAAGGAGAGU 74.1%
1919 CACCAUAGAAGUUUUUAGA 74.5% 1978 ACAGUCAACAGAACACACC 74.1%
1920 CUCAACCCAAUUGAUGGAC 74.5% 1979 GCUUUCUUUCACAAUCACU 74.0%
1921 UCAACCCAAUUGAUGGACC 74.5% 1980 UGGGAAUCAACAUGAGCAA 74.0%
1922 CAACCCAAUUGAUGGACCA 74.5% 1981 UCAAAGAAAAAGGAGAGUA 74.0%
1923 UUGACAUUGAACACGAUGA 74.5% 1982 AAUGAGCCAAGUGGAUAUG 74.0%
1924 ACACACUUUCAAAGAAAAA 745% 1983 GGGGCACCCCAACUCAACC 74.0%
1925 UUCUCUGAGAUCAUGAAGA 74.5% 1984 ACAGACUGUGUCCUGGAGG 74.0%
1926 ACACCAUAGAAGUUUUUAG 74.5% 1985 CAACAUGAGCAAAAAGAAG 74.0%
1927 CACACUUUCAAAGAAAAAG 74.5% 1986 UCAAAGACUACAGAUAUAC 74.0%
1928 AACACCAUAGAAGUUUUUA 74.5% 1987 GGGCACCCCAACUCAACCC 74.0%
1929 ACCAUCGAAGUUUUUAGAU 74.5% 1988 UAAUGAGCCAAGUGGAUAU 74.0%
1930 ACAACACACUUUCAAAGAA 74.4% 1989 CUUUCUUUCACAAUCACUG 74.0%
1931 CUCUGAGAUCAUGAAGAUC 74.4% 1990 UGGGGCACCCCAACUCAC 74.0%
1932 AACAACACACUUUCAAAGA 74.4% 1991 GUGGGAAUCAACAUGAGCA 74.0%
1933 GAUAACAACACACUUUCAA 74.4% 1992 CAGACUGUGUCCUGGAGGC 74.0%
1934 GAGAUAACAACACACUUUC 74.4% 1993 CGUUGCAACUACACACUCC 73.9%
1935 AACACACUUUCAAAGAAAA 74.4% 1994 CACAGUCAACAGAACACAC 73.9%
1936 UCUCUGAGAUCAUGAAGAU 74.4% 1995 ACACGAUGCCAAAGAUUGC 73.9%
1937 UGCCAGCCCAUGGUCCAGC 74.4% 1996 AGUCAACAGAACACACCAA 73.9%
1938 ACGAGAAGAUCAUUCGAGC 74.4% 1997 AACACGAUGACCAAAGAUG 73.9%
1939 CGAGAAGAUCAUUCGAGCU 74.4% 1998 AUGCCAGCCCAUGGUCCAG 73.9%
1940 AGAUAACAACACACUUUCA 74.4% 1999 AAAGAAAAAGGAGAGUAAG 73.9%
2000 CAAAGAAAAAGGAGAGUAA 73.9% 2059 ACCUGAGUGGUUCAGAAAC 72.9%
2001 AACAGACUGUGUCCUGGAG 73.9% 2060 CAAAAGAAAUACACCAAGA 72.9%
2002 UAAAAAGAAGGGCUAUUGC 73.8% 2061 UUUCUAGCAUGGUGGAGGC 72.9%
2003 CACGAUGACCAAAGAUGCA 73.8% 2062 AGGAAAAGGAUACAUGUUC 72.8%
2004 UGCCGUUGCAACUACACAC 73.8% 2063 AAAAGCUUGAACAGUCUGG 72.8%
2005 AAAUUAAAAAGAAGGGCUA 73.8% 2064 GGAAUUUCUAGCAUGGUGG 72.8%
2006 AAUUAAAAAGAAGGGCUAU 73.8% 2065 ACAAAAAAUCAACCUGAGU 72.8%
2007 AAAAAGAAGGGCUAUUGCA 73.8% 2066 AAAAAAUCAACCUGAGUGG 72.8%
2008 UUAAAAAGAAGGGCUAUUG 73.8% 2067 AAGAAAUACACCAAGACAA 72.8%
2009 AUUAAAAAGAAGGGCUAUU 73.7% 2068 AACAAAAUGGCAAGACUAG 72.8%
2010 GAACACGAUGACCAAAGAU 73.7% 2069 CAAAAAAUCAACCUGAGUG 72.8%
2011 UGAACACGAUGACCAAAGA 73.7% 2070 AGAAAUACACCAAGACAAC 72.8%
2012 GACAUUGAACACGAUGACC 73.6% 2071 AAGAAAAAACAAAGAGUGA 72.8%
2013 GAUAAUGAGCCAAGUGGAU 73.6% 2072 AAAGCUUGAACAGUCUGGA 72.8%
2014 CAUUGAACACGAUGACCAA 73.6% 2073 UGGAAUUUCUAGCAUGGUG 72.8%
2015 ACAUUGAACACGAUGACCA 73.6% 2074 AAUUUCUAGCAUGGUGGAG 72.8%
2016 UUUGAGAACUCAUGCCUUG 73.6% 2075 GAAAAGCUUGAACAGUCUG 72.8%
2017 UUGAGAACUCAUGCCUUGA 73.6% 2076 GAAUUUCUAGCAUAGUGGA 72.8%
2018 CAUAGAAGUUUUUAGAUCG 73.6% 2077 UUCUAGCAUGGUGGAGGCC 72.8%
2019 CAGCCCAUGGUCCAGCCAA 73.6% 2078 AAAGACUACAGAAUUACAU 72.7%
2020 AGAAUGAAGCUCCGAACAC 73.5% 2079 GGGCAAAAGAAAUACACCA 72.7%
2021 AAUGAAGCUCCGAACACAA 73.5% 2080 AAUACACCAAGACAACAUA 72.7%
2022 GAAUGAAGCUCCGAACACA 73.5% 2081 AAAGAAAUACACCAAGACA 72.7%
2023 UAGCCAACACCAUAGAAGU 73.4% 2082 UCCUAAAGGUUCCAGCGCA 72.7%
2024 AACCUGAGUGGUUCAGAAA 73.4% 2083 UAAGAGAAUGAAGCUCCGA 72.7%
2025 GCCAACACCAUAGAAGUUU 73.4% 2084 AAGAGAAUGAAGCUCCGAA 72.7%
2026 CCAACACCAUAGAAGUUUU 73.4% 2085 UUUGCGAAAAGCUUGAACA 72.7%
2027 UGAAUCUUGGGCAAAAGAA 73.4% 2086 CCUAAAGGUUCCAGCGCAA 72.7%
2028 CAACCUGAGUGGUUCAGAA 73.4% 2087 AUUUGCGAAAAGCUUGAAC 72.7%
2029 CAACACCAUAGAAGUUUUU 73.4% 2088 AGAGAAUGAAGCUCCGAAC 72.7%
2030 UAGGAAAAGGAUACAUGUU 73.3% 2089 UUCCUAAAGGUUCCAGCGC 72.7%
2031 GAGAACUCAUGCCUUGAAA 73.3% 2090 AAGACUACAGAUAUACAUA 72.7%
2032 UCAACCUGAGUGGUUCAGA 73.3% 2091 CACAAAAAAUCAACCUGAG 72.7%
2033 AGCAAAAAGAAGUCCUAUA 73 3% 2092 AAAUACACCAAGACAACAU 72.7%
2034 AGCCAACACCAUAGAAGUU 73.3% 2093 CAUUUGCGAAAAGCUUGAA 72.7%
2035 GAGCAAAAAGAAGUCCUAU 73 3% 2094 CAAAGACUACAGAUAUACA 72.6%
2036 GCAAAAAGAAGUCCUAUAU 73.3% 2095 CCAAUAAUGUUCUCAAACA 72.6%
2037 AGAACUCAUGCCUUGAAAC 73.3% 2096 GAGAAUGAAGCUCCGAACA 72.6%
2038 UCAUCAAAGACUACAGAUA 73.2% 2097 GAAAUACACCAAGACAACA 72.6%
2039 UGAGAACUCAUGCCUUGAA 73.2% 2098 AACAAACAAGGGUGGACAA 72.6%
2040 UUGGAAUUUCUAGCAUGGU 73.2% 2099 AAACAAAAUGGCAAGACUA 72.6%
2041 UUCAUCAAAGACUACAGAU 73.2% 2100 UCUUUGAGAACUCAUGCCU 72.6%
2042 UUAGCCAACACCAUAGAAG 73.2% 2101 UCCUAUAUAAAUAAAACAG 72.6%
2043 ACUCAGACGGCAAAAAUAA 73.1% 2102 CCUAUAUAAAUAAAACAGG 72.6%
2044 UUGAACACGAUGACCAAAG 73.1% 2103 CAAUAAUGUUCUCAAACAA 72.6%
2045 AAAAGAAAUACACCAAGAC 73.1% 2104 UUCGAGAGUAAGAGAAUGA 72.6%
2046 CUAAAGGUUCCAGCGCAAA 73.1% 2105 GUUCGAGAGUAAGAGAAUG 72.6%
2047 AAUCAACCUGAGUGGUUCA 73.1% 2106 UGGGCAAAAGAAAUACACC 72.6%
2048 AUCAACCUGAGUGGUUCAG 73.1% 2107 CUUGGGCAAAAGAAAUACA 72.6%
2049 ACAAAAUGGCAAGACUAGG 73.1% 2108 UCGAGAGUAAGAGAAUGAA 72.6%
2050 AAAAAUCAACCUGAGUGGU 73.1% 2109 AUGUUCGAGAGUAAGAGAA 72.6%
2051 CAAAAAGAAGUCCUAUAUA 73.1% 2110 AAUAAUGUUCUCAAACAAA 72.6%
2052 UCUAGCAUGGUGGAGGCCA 72.9% 2111 UUGGGCAAAAGAAAUACAC 72.6%
2053 AAAAUCAACCUGAGUGGUU 72.9% 2112 UGUUCGAGAGUAAGAGAAU 72.6%
2054 AUUUCUAGCAUGGUGGAGG 72.9% 2113 ACAAACAAGGGUGGACAAA 72.5%
2055 UAGCAUGGUGGAGGCCAUG 72.9% 2114 ACUCAUGCCUUGAAACAAU 72.5%
2056 AAAUCAACCUGAGUGGUUC 72.9% 2115 GAAAAAGGAGAGUAAGAGA 72.5%
2057 AUUGAACACGAUGACCAAA 72.9% 2116 AAAAGGAGGAUAAGAGACA 72.5%
2058 CUAGCAUGGUGGAGGCCAU 72.9% 2117 GAAUCUUGGGCAAAAGAAA 72.5%
2118 CUAGGAAAAGGAUACAUGU 72.5% 2177 CUGUGUCCUGGAGGCUAUG 72.0%
2119 AGCAUUUGCGAAAAGCUUG 72.5% 2178 AACACUAAGUGGAAUGAAA 72.0%
2120 AUCUUUGAGAACUCAUGCC 72.5% 2179 AGGAGAGUAAGAGACAACA 72.0%
2121 AAAGGAGAGUAAGAGACAA 72.5% 2180 UGCAACUUGUUCGAGAAAU 72.0%
2122 GCAUUUGCGAAAAGCUUGA 72.5% 2181 ACACUAAGUGGAAUGAAAA 72.0%
2123 AUCUUGGGCAAAAGAAAUA 72.4% 2182 UGCUGCAACUUGUUCGAGA 72.0%
2124 GCGAAAAGCUUGAACAGUC 72.4% 2183 GCUGUGGGAUCAAACCCAA 72.0%
2125 UGUUCAUCAAAGACUACAG 72.4% 2184 CCAACUCAACCCAAUUGAU 72.0%
2126 AAUCUUGGGCAAAAGAAAU 72.4% 2185 GACUGUGUCCUGGAGGCUA 72.0%
2127 AGUUUUGGAGUGUCUGGAA 72.4% 2186 ACUUGUUCGAGAAAUUUUU 72.0%
2128 GAGCUUUGACAUUGAACAC 72.4% 2187 AAGGAGAGUAAGAGACAAC 72.0%
2129 AGAAAAAGGAGAGUAAGAG 72.4% 2188 AGACUAGGAAAAGGAUACA 72.0%
2130 CAAUUGUUCAUCAAAGACU 72.4% 2189 GCAACUUGUUCGAGAAAUU 72.0%
2131 AAUUGUUCAUCAAAGACUA 72.4% 2190 GGAGAGUAAGAGACAACAU 72.0%
2132 UCUUGGGCAAAAGAAAUAC 72.4% 2191 GUCCUAUAUAAAUAAAACA 71.9%
2133 AACUCAUGCCUUGAAACAA 72.4% 2192 CUAAUAAGAGCUUUGACAU 71.9%
2134 AGAAAAAACAAAGAGUGAA 72.4% 2193 CAACUUGUUCGAGAAAUUU 71.9%
2135 UGCGAAAAGCUUGAACAGU 72.4% 2194 AAAAUGGCAAGACUAGGAA 71.9%
2136 AGACUACAGAUAUACAUAU 72.4% 2195 CUGGACGGAUUAAGAAGGA 71.9%
2137 UUGCGAAAAGCUUGAACAG 72.4% 2196 GAAGUCCUAUAUAAAUAAA 71.9%
2138 CGAAAAGCUUGAACAGUCU 72.4% 2197 UAAUAAGAGCUUUGACAUU 71.9%
2139 AAGAAAAAGGAGAGUAAGA 72.4% 2198 CAAAGAGUGAAUAAGAGAG 71.9%
2140 GAGUGAAUAAGAGAGGCUA 72.3% 2199 CUUGUUCGAGAAAUUUUUC 71.9%
2141 GGCAAAAGAAAUACACCAA 72.3% 2200 GCUGCAACUUGUUCGAGAA 71.9%
2142 CAUGUUCGAGAGUAAGAGA 72.3% 2201 UCAUGCCUUGAAACAAUGG 71.9%
2143 AAAAAACAAAGAGUGAAUA 72.3% 2202 CAUGCCUUGAAACAAUGGA 71.9%
2144 AGAGUGAAUAAGAGAGGCU 72.3% 2203 AAAUGGCAAGACUAGGAAA 71.9%
2145 GAAAAAACAAAGAGUGAAU 72.3% 2204 CAAAAUGGCAAGACUAGGA 71.9%
2146 CUGUGGGAUCAAACCCAAU 72.2% 2205 UCUGGACGGAUUAAGAAGG 71.9%
2147 GGGAAUCAACAUGAGCAAA 72.2% 2206 AAAGAGUGAAUAAGAGAGG 71.9%
2148 GUGUCCUGGAGGCUAUGGC 72.2% 2207 ACAGGAACAGGGUACACCA 71.8%
2149 AAAAAGGAGAGUAAGAGAC 72.2% 2208 CACUUUCAAAGAAAAAGGA 71.8%
2150 UCUGUAAACAAUGCUGUAG 72.2% 2209 CAACACUAAGUGGAAUGAA 71.8%
2151 GUGGGAUCAAACCCAAUCA 72.2% 2210 GACAACACUAAGUGGAAUG 71.8%
2152 AAGAUCAUUCGAGCUAAAG 72.2% 2211 ACAACACUAAGUGGAAUGA 71.8%
2153 UGUGUCCUGGAGGCUAUGG 72.2% 2212 UGGACGGAUUAAGAAGGAA 71.8%
2154 UGUGGGAUCAAACCCAAUC 72.2% 2213 ACACUUUCAAAGAAAAAGG 71.8%
2155 CUGUAAACAAUGCUGUAGU 72.2% 2214 AAAACAAAGAGUGAAUAAG 71.8%
2156 GAACUCAUGCCUUGAAACA 72.2% 2215 CAGGAACAGGGUACACCAU 71.8%
2157 GUUUUGGAGUGUCUGGAAU 72.2% 2216 UAUGGAAUAUGAUGCCGUU 71.8%
2158 CAUGAGCAAAAAGAAGUCC 72.1% 2217 ACUUUCAAAGAAAAAGGAG 71.8%
2159 GGAUGAUGAUGGGCAUGUU 72.1% 2218 GAGUCAGCUGAUAUGAGCA 71.7%
2160 AACAAAGAGUGAAUAAGAG 72.1% 2219 AGAGCUUUGACAUUGAACA 71.7%
2161 ACAAAGAGUGAAUAAGAGA 72.1% 2220 AUAAGAGCUUUGACAUUGA 71.7%
2162 AAACAAAGAGUGAAUAAGA 72.1% 2221 GGACGGAUUAAGAAGGAAG 71.7%
2163 GGGAUGAUGAUGGGCAUGU 72.1% 2222 GAGAGUAAGAGACAACAUG 71.7%
2164 AAAAGGAUAUAUGUUCGAG 72.1% 2223 AAGAGCUUUGACAUUGAAC 71.7%
2165 ACUAGGAAAAGGAUACAUG 72.1% 2224 GUCUGGACGGAUUAAGAAG 71.7%
2166 CUUUUGAGAACCAUGCCUU 72.0% 2225 GAUGGGCUCCAAUCCUCCG 71.7%
2167 AGACXGUGUCCUGGAGGCU 72.0% 2226 AAGCUGUGGAAUCAAACCC 71.7%
2168 GACUAGGAAAAGGAUACAU 72.0% 2227 UAAGAGCUUUGACAUUGAA 71.7%
2169 CCCAACUCAACCCAAUUGA 72.0% 2228 CUUUCAAAGAAAAAGGAGA 71.7%
2170 AAAAACAAAGAGUGAAUAA 72.0% 2229 AUGGGCUCCAAUCCUCCGA 71.7%
2171 UUGUUCGAGAAAUUUUUCC 72.0% 2230 GGAUGGGCUCCAAUCCUCC 71.7%
2172 AGUCCUAUAUAAAUAAAAC 72.0% 2231 GACGGAUUAAGAAGGAAGA 71.7%
2173 AACUUGUUCGAGAAAUUUU 72.0% 2232 AGUCAGCUGAUAUGAGCAU 71.7%
2174 CCCCAACUCAACCCAAUUG 72.0% 2233 ACAAAUACAGAAACUGGGG 71.6%
2175 AAGUCCUAUAUAAAUAAAA 72.0% 2234 GGAACAGGGUACACCAUGG 71.6%
2176 ACUGUGUCCUGGAGGCUAU 72.0% 2235 AGCUGUGGGAUCAAACCCA 72.6%
2236 CAAAUACAGAAACUGGGGC 71.6% 2295 UGAGCAUCGCACCAAUAAU 70.9%
2237 GUCAGCUGAUAUGAGCAUU 71.6% 2296 CGCACCAAUAAUGUUCUCA 70.9%
2238 CUGCAACUUGUUCGAGAAA 71.6% 2297 UUAGCUAGAAGCAUUUGCG 70.9%
2239 GAACAGGGUACACCAUGGA 71.6% 2298 CAUCGCACCAAUAAUGUUC 70.9%
2240 AAGAGUGAAUAAGAGAGGC 71.6% 2299 GAGCAUCGCACCAAUAAUG 70.9%
2241 AGUGCUGCAACUUGUUGGA 71.5% 2300 UCUCGAUACUGAAUCUUGG 70.8%
2242 CUUUCACAAUCACUGGGGA 71.5% 2301 AGACGAGAAGAUCAUUCGA 70.8%
2243 CUCAUGCCUUGAAACAAUG 71.5% 2302 GGUAAUGAAAAGAAGGCCA 70.8%
2244 UCUUUCACAAUCACUGGGG 71.5% 2303 CAGACGAGAAGAUCUUUCG 70.8%
2245 AAGUGCUGCAACUUGUUCG 71.5% 2304 GUCUCGAUACUGAAUCUUG 70.8%
2246 AGGAACAGGGUACACCAUG 71.5% 2305 UUUAGCUAGAAGCAUUUGC 70.8%
2247 AUGCCUUGAAACAAUGGAA 71.4% 2306 GUAAUGAAAAGAAGGCCAA 70.8%
2248 AAUAAAGAGCUUUGACAUG 71.4% 2307 ACUUUAGCUAGAAGCAUUU 70.8%
2249 CAGUUUUGGAGUGUCUGGA 71.4% 2308 AGCCCAUGGUCCAGCCAAA 70.8%
2250 AAAGAAGGCCAAACUGGCA 71.4% 2309 UAAUGAAAAGAAGGCCAAA 70.7%
2251 AUCAAAGACUACAGAUAUA 71.4% 2310 GAGUCUCGAUACUGAAUCU 70.7%
2252 CCUUUGUCAGCCAUAAAGA 71.4% 2311 UCAGACGAGAAGAUCAUUC 70.7%
2253 GUAUGGAAUAUGAUGCCGU 71.4% 2312 UCGUUCAACAAACAAGGGU 70.7%
2254 UUGGCGAUGAUUACAUAUA 71.4% 2313 AUUCAGACGAGAAGAUCAU 70.7%
2255 GAAAAGAAGGCCAAACUGG 71.4% 2314 UGCCAUAGAGGAGACACAC 70.7%
2256 CAUCAAAGACUACAGAUAU 71 4% 2315 CCCAUGGUCCAGCCAAAAG 70.7%
2257 CCCUUGUCAGCCAUAAAAG 71.4% 2316 GGAGUCUCGAUACUGAAUC 70.7%
2258 UUGUUCAUCAAAGACUACA 71.4% 2317 UGACAAAGAUGCAGAGGAG 70.6%
2259 AAAAGAAGGCCAAACUGGC 71.4% 2318 CACAAAUUCAGACGAGAAG 70.6%
2260 GCCCAUGGUCCAGCCAAAA 71.2% 2319 CUGAGCAUCGCACCAAUAA 70.6%
2261 ACAACAUACUGGUGGGAUG 71.2% 2320 CCAAAGAUGCAGAGAGAGG 70.6%
2262 GUGCUGCAACUUGUUCGAG 71.2% 2321 AGUCUCGAUACUGAAUCUU 70.6%
2263 AGUAUGGAAUAUGAUGCCG 71.2% 2322 CAACAAGGAAGAAAAUUGA 70.6%
2264 CAACAUACUGGUGGGAUGG 71.2% 2323 GCACCCCAACUCAACCCAA 70.6%
2265 AAUCCCUUUGUCAGCCAUA 71.2% 2324 GCCAUAGAGGAGACVCACA 70.6%
2266 UCCCUUUGUCAGCCAUAAA 71.2% 2325 GGCACCCCAACUCAACCCA 70.6%
2267 AUUGUUCAUCAAAGACUAC 71.2% 2326 UAUACAUAUAGGUGCCAUA 70.6%
2268 AUCCCUUUGUCAGCCAUAA 71.2% 2327 AUGACCAAAGAUGCAGAGA 70.6%
2269 UGGCAAGACUAGGAAAAGG 71.1% 2328 GUUGAAACUUUAGCUAGAA 70.6%
2270 UUCUUUCACAAUCACUGGG 71.1% 2329 AUACAUAUAGGUGCCAUAG 70.6%
2271 AAUGGCAAGACUAGGAAAA 71.1% 2330 GUCGUUCAACAAACAAGGG 70.5%
2272 UUUCACAAUCACUGGGGAC 71.1% 2331 ACAAAUUCAGACGAGAAGA 70.5%
2273 UCGCACCAAUAAUGUUCUC 71.1% 2332 ACAAGGAAGAAAAUUGAGA 70.5%
2274 GCACCAAUAAUGUUCUCAA 71.1% 2333 UCCUGAGCAUCGCACCAAU 70.5%
2275 ACCAAUAAUGUUCUCAAAC 71.1% 2334 AUCCUGAGCAUCGCACCAA 70.5%
2276 UUCACAAUCACUGGGGACA 71.1% 2335 GGGGACAACACUAAGUGGA 70.5%
2277 UCACAAUCACUGGGGACAA 71.1% 2336 AUAGAGGAGACACACAAAU 70.5%
2278 CACCAAUAAUGUUCUCAAA 71.1% 2337 GGGACAACACUAAGUGGAA 70.5%
2279 AUGGCAAGACUAGGAAAAG 71.1% 2338 CCAUAGAGGAGACACACAA 70.5%
2280 ACUUAUGAUUGGACAUUAA 71.0% 2339 ACCAAAGAUGCAGAGAGAG 70.5%
2281 GCUUUGACAUUGAACACGA 71.0% 2340 ACACAAAUUCAGACGAGAA 70.5%
2282 GAAGUCGUUCAACAAACAA 71.0% 2341 UCAACAAGGAAGAAAAUUG 70.5%
2283 AGCUUUGACAUUGAACACG 71.0% 2342 GACGAGAAGAUCAUUCGAG 70.5%
2284 AAGUCGUUUCAACAAAAAG 71.0% 2343 GUUCAUCAAAGACUACAGA 70.5%
2285 UAGCUAGAAGCAUUUGCGA 710% 2344 AAAUUCAGACGAGAAGAUC 70.5%
2286 UUUGACAUUGAACACGAUG 71.0% 2345 CAUAGAGGAGACACACAAA 70.5%
2287 CUUUGACAUUUGAACCGAU 71.0% 2346 CAAAUUCAGACGAGAAGAU 70.5%
2288 AUCGCACCAAUAAUGUUCU 71.0% 2347 GGACAACACUAAGUGGAAU 70.5%
2289 CUUUAGCUAGAAGCAUUUG 71.0% 2348 AAUUCAGACGAGAAGAUCA 70.5%
2290 CUUAUGAUUGGACAUUAAA 71.0% 2349 GACCAAAGAUGCAGAGAGA 70.5%
2291 GAACACAAAUACCCGCAGA 71.0% 2350 AACUUUAGCUAGAAGCAUU 70.4%
2292 AGCAUCGCACCAAUAAUGU 70.9% 2351 AUGAAAAGAAGGCCAAACU 70.4%
2293 GCAUCGCACCAAUAAUGUU 70.9% 2352 CACCCCAACUCAACCCAAU 70.4%
2294 UUCAGACGAGAAGAUCAUU 70.9% 2353 UACUGAAUCUUGGGCAAAA 70.4%
2354 ACCCCAACUCAACCCAAUU 70.4% 2372 AAGAGCUGUGGGAAUCAAA 70.2%
2355 AAUGAAAAGAAGGCCAAAC 70.4% 2373 CACAUAUACCCGCAGAAAU 70.2%
2356 UGAAACUUUAGCUAGAAGC 70.4% 2374 UGAAAAGAAGGCCAAACUG 70.2%
2357 UUGAAACUUUAGCUAGAAG 70.4% 2375 UAAAGAAGCUGUGGGAUCA 70.1%
2358 AACAAGGAAGAAAAUUGAG 70.4% 2376 AAAGAAGCUGUGGGAUCAA 70.1%
2359 GAAACUUUAGCUAGAAGCA 70.4% 2377 CACACAAAUUCAGACGAGA 70.1%
2360 UAGAGGAGACACACAAAUU 70.4% 2378 CAAAUACCCGCAGAAAUGC 70.1%
2361 AAACUUUAGCUAGAAGCAU 70.4% 2379 UUGGAGUGUCUGGAAUAAA 70.1%
2362 CCUGAGCAUCGCACCAAUA 70.3% 2380 UAUUUCAAUGAAUCAACAA 70.1%
2363 AUCAACAAGGAAGAAAAUU 70.3% 2381 UUUGGAGUGUCUGGAAUAA 70.1%
2364 AUACUGAAUCUUGGGCAAA 70.3% 2382 AAAUACCCGCAGAAAUGCU 70.1%
2365 CGAACACAAAUACCCGCAG 70.3% 2383 AACACAAAUACCCGCAGAA 70.1%
2366 AAUCAACAAGGAAGAAAAU 70.3% 2384 CAUCCUGAGCAUCGCACCA 70.1%
2367 ACAAAUACCCGCAGAAAUG 70.2% 2385 AAAUACAGAAACUGGGGCA 70.0%
2368 AGAAGCUGUGGGAUCAAAC 70.2% 2386 CUGCAUUAGCCAACACCAU 70.0%
2369 ACUGAAUCUUGGGCAAAAG 70.2% 2387 ACUGCAUUAGCCAACACCA 70.0%
2370 ACACAAAUACCCGCAGAAA 70.2% 2388 AAUACAGAAACUGGGGCAC 70.0%
2371 GAAUCAACAAGGAAGAAAA 70.2% 2389 AGUCGUUCAACAAACAAGG 70.0%
表2-3在表1-3所列甲型流感片段2(PA)序列中以至少70%存在的保守19-mer序列
Seq ID 序列 百分比 2421 GAGGAGUGCCUGAUUAAUG 96.9%
2390 UUAGAGCCUAUGUGGAUGG 98.9% 2422 AGUGCCUGAUUAAUGAUCC 96.9%
2391 UUUAGAGCCUAUGUGGAUG 98.9% 2423 UAUGAAGCAAUUGAGGAGU 96.4%
2392 AGCAAUUGAGGAGUGCCUG 98.7% 2424 AUAUGAAGCAAAUGAGGAG 96.4%
2393 UUGAGGAGUGCCUGAUUAA 98.7% 2425 AUGAAGCAAUUGAGGAGUG 96.4%
2394 GCAAUUGAGGAGUGCCUGA 98.6% 2426 UGAAGCAAUUGAGGAGUGC 96.4%
2395 AUUGAGGAGUGCCUGAUUA 98.6% 2427 AAGCAAUUGAGGAGUGCCU 96.4%
2396 CAAUUGAGGAGUGCCUGAU 98.6% 2428 GAAGCAAUUGAGGAGUGCC 96.4%
2397 AAUUGAGGAGUGCCUGAUU 98.6% 2429 ACAAAUUUGCAGCAAUAUG 95.4%
2398 UAGAGCCUAUGUGGAUGGA 98.3% 2430 AACAAAUUUGCAGCAAUAU 95.4%
2399 AGAGCCUAUGUGGAUGGAU 98.3% 2431 GGGCUAUAUGAAGGCAUUG 95.3%
2400 GAGCCUAUGUGGAUGGAUU 98.2% 2432 GCUAUAUGAAGCAAUUGAG 95.3%
2401 UAAUGAUCCCUGGGUUUUG 98.0% 2433 UCAUGUAUUCAGAUUUUCA 95.3%
2402 UUAAUGAUCCCUGGGUUUU 98.0% 2434 GGCUAUAUGAAGCAAUUGA 95.3%
2403 AUGAUCCCUGGGUUUUGCU 98.0% 2435 CAAAUUUGCAGCAAUAUGC 95.2%
2404 AAUGAUCCCUGGGUUUUGC 98.0% 2436 AAAUUUGCAGCAAUAUGCA 95.2%
2405 CCUGAUUAAUGAUCCCUGG 97.9% 2437 UUCAUGUAUUCAGAUUUUC 95.2%
2406 UGCCUGAUUAAUGAUCCCU 97.9% 2438 AAUUUGCAGCAAUAUGCAC 95.1%
2407 AUUAAUGAUCCCUGGGUUU 97.9% 2439 ACAAACAAAUUUGCAGCAA 95.0%
2408 GCCUGAUUAAUGAUCCCUG 97.9% 2440 CAAACAAAUUUGCAGCAAU 95.0%
2409 CUGAUUAAUGAUCCCUGGG 97.9% 2441 AAACAAAUUUGCAGCAAUA 95.0%
2410 GAUUAAUGAUCCCUGGGUU 97.8% 2442 UUUUAGAGCCUAUGUGGAU 94.9%
2411 UGAUUAAUGAUCCCUGGGU 97.8% 2443 AAUUUUAGAGCCUAUGUGG 94.7%
2412 UAUAUGAAGCAAUUGAGGA 97.3% 2444 AUUUUAGAGCCUAUGUGGA 94.7%
2413 CUAUAUGAAGCAAUUGAGG 97.2% 2445 GUAUUCAGAUUUUCAUUUC 94.6%
2414 CUUGGUUCAACUCCUUCCU 97.1% 2446 GCAUCCUGUGCAGCAAUGG 94.6%
2415 UCUUGGUUCAACUCCUUCC 97.1% 2447 AUGCAUCCUGUGCAGCAAU 94.6%
2416 AGGAGUGCCUGAUUAAUGA 96.9% 2448 UAUUCAGAUUUUCAUUUCA 94.6%
2417 GAGUGCCUGAUUAAUGAUC 96.9% 2449 GAAACAAACAAAUUUGCAG 94.6%
2418 UGAGGAGUGCCUGAUUAAU 96.9% 2450 UGUAUUCAGAUUUUCAUUU 94.6%
2419 GUGCCUGAUUAAUGAUCCC 96.9% 2451 AAUGCAUCCUGUGCAGCAA 94.6%
2420 GGAGUGCCUGAUUAAUGAU 96.9% 2452 AACAAACAAAUUUGCAGCA 94.6%
2453 AAACAAACAAAUUUGCAGC 94.6% 2504 CGUCAGUCCGAAAGAGGCG 92.4%
2454 CAUCCUGUGCAGCAAUGGA 94.6% 2505 GUCAGUCCGAAAGAGGCGA 92.4%
2455 AUUCAGAUUUUCAUUUCAU 94.6% 2506 UCAGUCCGAAAGAGGCGAA 92.4%
2456 AUGUAUUCAGAUUUUCAUU 94.6% 2507 GGUAAACUUUGUGAGCAUG 92.4%
2457 UGCAUCCUGUGCAGCAAUG 94.6% 2508 UCCGAAAGAGGCGAAGAAA 92.4%
2458 CAUGUAUUCAGAUUUUCAU 94.3% 2509 CCGAAAGAGGCGAAGAAAC 92.4%
2459 AGAAUUUUAGAGCCUAUGU 94.3% 2510 UUUCGUCAGUCCGAAAGAG 92.4%
2460 GAGAAUUUUAGAGCCUAUG 94.2% 2511 UCCUUUCGUCAGUCCGAAA 92.3%
2461 GAUUUUCAUUUCAUCAAUG 94.2% 2512 CCUUUCGUCAGUCCGAAAG 92.3%
2462 UGAGAAUUUUGAGGCCUAU 94.2% 2513 GCGAUUUGAAGCAAUAUGA 92.3%
2463 UUGAGAAUUUUAGAGCCUA 94.2% 2514 CUUUCGUCAGUCCGAAAGA 92.3%
2464 AUUUUCAUUUCAUCAAUGA 94.2% 2515 AAGCGAUUUGAAGCAAUAU 92.1%
2465 UCAGAUUUUCAUUUCAUCA 94.1% 2516 AAGAUUUUGUGCGACAAUG 92.0%
2466 GAAUUUUAGAGCCUAUGUG 94.1% 2517 AGCGAUUUGAAGCAAUAUG 92.0%
2467 CAGAUUUUCAUUUCAUCAA 94.1% 2518 GUCCGAAAGAGGCGAAGAA 91.8%
2468 GUUCAGGCUCUUAGGGACA 94.1% 2519 GGCAAGCUUUCUCAAAUGU 91.5%
2469 UUCAGGCUCUUAGGGACAA 94.1% 2520 ACAUUCUUUGGAUGGAAAG 91.3%
2470 AGAUUUUCAUUUCAUCAAU 94.1% 2521 CAUUCUUUGGAUGGAAAGA 91.3%
2471 UUCAGAUUUUCAUUUCAUC 94.0% 2522 GAUUUGAAGCAAUAUGAUA 91.2%
2472 AGAGGCGAAGAAACAAUUG 93.7% 2523 AGGGCAAGCUUUCUCAAAU 91.2%
2473 GAGGCGAAGAAACAAUUGA 93.7% 2524 UUGAGGGCAAGCUUUCUCA 91.2%
2474 GGCGAAGAAACAAUUGAAG 93.5% 2525 AUUUGAAGCAAUAUGAUAG 91.2%
2475 CGAAGAAACAAUUGAAGAA 93.5% 2526 AUUGAGGGCAAGCUUUCUC 91.2%
2476 GCGAAGAAACAAUUGAAGA 93.5% 2527 GAGGGCAAGCUUUCUCAAA 91.2%
2477 AGGCGAAGAAACAAUUGAA 93.5% 2528 GGGCAAGCUUUCUCAAAUG 91.2%
2478 GAAGAAACAAUUGAAGAAA 93.5% 2529 CAUUGAGGGCAAGCUUUCU 91.2%
2479 AAAUGAAAUGGGGAAUGGA 93.4% 2530 GCAAGCUUUCUCAAAUGUC 91.0%
2480 AAAAUGAAAUGGGGAAUGG 93.4% 2531 UGAGGGCAAGCUUUCUCAA 91.0%
2481 UGAAAUGGGGAAUGGAGAU 93.3% 2532 CAGAAUGAGUUCAACAAGG 91.0%
2482 AAUGGGGAAUGGAGAUGAG 93.3% 2533 AGAAUGAGUUCAACAAGGC 91.0%
2483 CACAUUUUCUCAUUCACUG 93.3% 2534 AUAAGCGAUUUGAAGCAAU 90.7%
2484 AAAUGGGGAAUGGAGAUGA 93.3% 2535 UUCUUUGGAUGGAAAGAAC 90.5%
2485 GAAAUGGGGAAUGGAGAUG 93.3% 2536 CGAUUUGAAGCAAUAUGAU 90.5%
2486 AUGAAAUGGGGAAUGGAGA 93.3% 2537 UCUUUGGAUGGAAAGAACC 90.5%
2487 ACAUUUUCUCAUUCACUGG 93.2% 2538 AGCCUAUGUGGAUGGAUUC 90.4%
2488 AAAGAGGCGAAGAAACAAU 92.8% 2539 CAAUGAAAGAGUAUGGAGA 90.4%
2489 GAAAGAGGCGAAGAAACAA 92.8% 2540 UGAAGCAAUAUGAUAGUGA 90.2%
2490 AAUGAAAUGGGGAAUGGAG 92.8% 2541 UGGAAGUUUUGUGCGGACA 90.1%
2491 UAAACUUUGUGAGCAUGGA 92.5% 2542 AUGGAAGAUUUUGUGCGAC 90.1%
2492 AAGAGGCGAAGAAACAAUU 92.5% 2543 AAAGAGUUUUUUGAGAAUA 90.1%
2493 GUAAACUUUGUGAGCAUGG 92.5% 2544 UAAUGAAGGGGGUAUACAU 90.0%
2494 CAGUCCGAAAGAGGCGAAG 92.5% 2545 GAAGAUUUUGUGCGACAAU 90.0%
2495 AGUCCGAAAGAGGCGAAGA 92.5% 2546 UCUGGAUAGAGCUCGAUGA 89.9%
2496 CGAAAGAGGCGAAGAAACA 92.4% 2547 AUAAUGAAGGGGGUAUACA 89.9%
2497 UGGUAAACUUUGUGAGCAU 92.4% 2548 AUUCUUUGGAUGGAAAGAA 89.9%
2498 GUGGUAAACUUUGUGAGCA 92.4% 2549 UUGAAGCAAUAUGAUAGUG 89.9%
2499 UUUGUGCGACAAUGCUUCA 92.4% 2550 GAGAAACACAUGACCAAAG 89.6%
2500 UCGUCAGUCCGAAAGAGGC 92.4% 2551 UUUGAAGCAAUAUGAUAGU 89.6%
2501 UUGUGCGACAAUGCUUCAA 92.4% 2552 AGAAAGACAUGACCAAAGA 89.4%
2502 UAAGCGAUUUGAAGCAAUA 92.4% 2553 GAUUUUGUGCGACAAUGCU 89.4%
2503 UUCGUCAGUCCGAAAGAGG 92.4% 2554 AUUUUGUGCGACAAUGCUU 89.4%
2555 UGAAGGGGGUAUACAUUAA 89.3% 2606 GGGGGUAUACAUUAAUACU 87.0%
2556 AGAUUUUGUGCGACAAUGC 89.2% 2607 GGAUGGAUUCGAACCGAAC 87.0%
2557 GGAAGAUUUUGUGCGACAA 89.2% 2608 UGUGGAUGGAUUCGAACCG 87.0%
2558 AUGAAGGGGGUAUACAUUA 89.2% 2609 CUUGAGAAUUUUAGAGCCU 86.9%
2559 AAUGAAGGGGGUAUACAUU 89.2% 2610 GCCUUGAGAAUUUUAGAGC 86.9%
2560 CCUAUGUGGAUGGAUUCGA 89.2% 2611 CUGCCUUGAGAAUUUUAGA 86.9%
2561 CUAUGUGGAUGGAUUCGAA 89.2% 2612 UCCUGCCUUGAGAAUUUUA 86.9%
2562 AUGUGGAUGGAUUCGAACC 89.1% 2613 UGUGCAGCAAUGGACGAUU 86.9%
2563 UAUGUGGAUGGAUUCGAAC 89.1% 2614 GUGCAGCAAUGGACGAUUU 86.9%
2564 AAAGACAUGACCAAAGAGU 89.0% 2615 UUCUCCUGCCUUGAGAAUU 86.9%
2565 AACAUUCUUUGGAUGGAAA 89.0% 2616 CUCCUGCCUUGAGAAUUUU 86.9%
2566 AAGACAUGACCAAAGAGUU 89.0% 2617 UGCCUUGAGAAUUUUAGAG 86.9%
2567 UUUUGUGCGACAAUGCUUC 88.9% 2618 UCUCCUGCCUUGAGAAUUU 86.9%
2568 GCCUAUGUGGAUGGAUUCG 88.7% 2619 CCUGCCUUGAGAAUUUUAG 86.9%
2569 GGGAUUCCUUUCGUCAGUC 88.4% 2620 CCUUGAGAAUUUUAGAGCC 86.9%
2570 UGGGAUUCCUUUCGUCAGU 88.4% 2621 UGCAUUGAGGGCAAGCUUU 86.8%
2571 GAAAGACAUGACCAAAGAG 88.4% 2622 GGCCUCUGGGAUUCCUUUC 86.8%
2572 GCAAUGAAAGAGUAUGGAG 88.3% 2623 GCAUUGAGGGCAAGCUUUC 86.8%
2573 AUUCCUUUCGUCAGUCCGA 88.1% 2624 AUCCUGUGCAGCAAUGGAC 86.8%
2574 GAUUCCUUUCGUCAGUCCG 88.1% 2625 UCCUGUGCAGCAAUGGACG 86.7%
2575 GGAUUCCUUUCGUCAGUCC 88.1% 2626 AGAGGCCUCUGGGAUUCCU 86.6%
2576 AAGGGGGUAUACAUUAAUA 87.8% 2627 AGGCCUCUGGGAUUCCUUU 86.6%
2577 GAAGGGGGUAUACAUUAAU 87.8% 2628 CUUCUCCUGCCUUGAGAAU 86.6%
2578 AAUGAAAGAGUAUGGAGAG 87.8% 2629 GCCUCUGGGAUUCCUUUCG 86.6%
2579 AGGGGGUAUACAUUAAUAC 87.8% 2630 GAGGCCUCUGGGAUUCCUU 86.6%
2580 UGUAUGAUUACAAGGAGAA 87.7% 2631 CCUGUGCAGCAAUGGACGA 86.6%
2581 CCGAACUUCUCCUGCCUUG 87.4% 2632 CCUCUGGGAUUCCUUUCGU 86.5%
2582 CGAACUUCUCCUGCCUUGA 87.4% 2633 CUGGGAUUCCUUUCGUCAG 86.5%
2583 AACUUCUCCUGCCUUGAGA 87.3% 2634 CUGUGCAGCAAUGGACGAU 86.4%
2584 GAACUUCUCCUGCCUUGAG 87.3% 2635 GGAUUCGAACCGAACGGCU 86.2%
2585 AAAGAGAAAGACAUGACCA 87.3% 2636 UGGAUUCGAACCGAACGGC 86.2%
2586 AUGGAUUCGAACCGAACGG 87.2% 2637 CAGAGGCCUCUGGGAUUCC 86.1%
2587 AAGAGAAAGACAUGACCAA 87.2% 2638 ACGGCUGCAUUGAGGGCAA 86.0%
2588 CUCUGGGAUUCCUUUCGUC 87.2% 2639 AACGGCUGCAUUGAGGGCA 86.0%
2589 GAUGGAUUCGAACCGAACG 87.2% 2640 GCUGCAUUGAGGGCAAGCU 85.8%
2590 GGGUAUACAUUAAUACUGC 87.2% 2641 UUCCUUUCGUCAGUCCGAA 85.8%
2591 GGGGUAUACAUUAAUACUG 87.2% 2642 CUGCAUUGAGGGCAAGCUU 85.8%
2592 AAGCUUUCUCAAAUGUCCA 87.1% 2643 GGCUGCAUUGAGGGCAAGC 85.8%
2593 AGCUUUCUCAAAUGUCCAA 87.1% 2644 CGGCUGCAUUGAGGGCAAG 85.8%
2594 ACAUGACCAAAGAGUUUUU 87.1% 2645 UUGUAUGAUUACAAGGAGA 85.8%
2595 AGAGAAAGACAUGACCAAA 87.1% 2646 AUAGUGACGAACCUGAAUU 85.7%
2596 UCUGGGAUUCCUUUCGUCA 87.1% 2647 GGGGCUAUAUGAAGCAAUU 85.6%
2597 ACUUCUCCUGCCUUGAGAA 87.1% 2648 UGACCAAAGAGUUUUUUGA 85.6%
2598 GACAUGACCAAACAGUUUU 87.1% 2649 UUGUUCAGGCUCUUAGGGA 85.5%
2599 AGACAUGACCAAAGAGUUU 87.1% 2650 CAUGACCAAAGAGUUUUUU 85.5%
2600 GUGGAUGGAUUCGAACCGA 87.0% 2651 AUGACCAAAGAGUUUUUUG 85.5%
2601 AAGCACAGAUUUGAAAUAA 87.0% 2652 UUUUCUCAUUCACUGGGGA 85.4%
2602 AGCACAGAUUUGAAUUAAU 87.0% 2653 UGUUCAGGCUCUUAGGGAC 85.4%
2603 CAAGCUUUCUCAAAUGUCC 87.0% 2654 GACCAAAGAGUUUUUUGAG 85.4%
2604 GCUUUCUCAAAUGUCCAAA 87.0% 2655 CAUUUUCUCAUUCACUGGG 85.4%
2605 UGGAUGGAUUCGAACCGAA 87.0% 2656 AUUUUCUCAUUCACUGGGG 85.4%
2657 AAGCAAUAUGAUAGUGACG 85.4% 2708 ACGAACCUGAAUUAAGGUC 84.1%
2658 GAUAGUGACGAACCUGAAU 85.4% 2709 AUGUUCUUGUAUGUGAGGA 84.1%
2659 AGCAAUAUGAUAGUGACGA 85.3% 2710 UUUUCUCUCACUGACCCGA 84.1%
2660 ACCAAAGAGUUUUUUGAGA 85.2% 2711 AACAGAGGCCUCUGGGAUU 84.1%
2661 CUUGCCGACCAAAGUCUCC 85.2% 2712 UUUCUCUCACUGACCCGAG 84.1%
2662 UUGCCGACCAAAGUCUCCC 85.2% 2713 GAACGGCUGCAUUGAGGGC 84.1%
2663 UAUGAUAGUGACGAACCUG 85.1% 2714 UGUUCUUGUAUGUGAGGAC 84.1%
2664 AAUAUGAUAGUGACGAACC 85.1% 2715 AAUAAAUUAAAUCUGAGGA 84.0%
2665 UGAUAGUGACGAACCUGAA 85.1% 2716 GACGAACCUGAAUUAAGGU 84.0%
2666 AUGAUAGUGACGAACCUGA 85.1% 2717 AUAAAAUUAAAUCUGAGAA 84.0%
2667 CAAUAUGAUAGUGACGAAC 85.1% 2718 GCCAACAGAGGCCUCUGGG 83.9%
2668 UUGAUGAUCCAAAUGCACU 85.1% 2719 UGGCCAACAGAGGCCUCUG 83.9%
2669 CUUUCUCAAAUGUCCAAAG 85.0% 2720 CUAAGAAGUGCCAUAGGCC 83.9%
2670 UCAAUAGCCUGUAUGCAUC 85.0% 2721 CCAACAGAGGCCUCUGGGA 83.9%
2671 AAGGCCUAUGUUCUUGUAU 85.0% 2722 CAACAGAGGCCUCUGGGAU 83.9%
2672 AAAUGGGAGAAAUACUGUG 85.0% 2723 GGCCAACAGAGGCCUCUGG 83.9%
2673 AUAUGAUAGUGACGAACCU 85.0% 2724 AUGGCCAACAGAGGCCUCU 83.8%
2674 AAUGGGAGAAAUACUGUGU 85.0% 2725 UUCUUGUAUGUGAGGACAA 83.8%
2675 CUUGAUGAUCCAAAUGCAC 85.0% 2726 UCUUGUAUGUGAGGACAAA 83.8%
2676 UUCAAUAGCCUGUAUGCAU 85.0% 2727 AAAAGGCCAAUAAAAUUAA 83.7%
2677 GAAGCAAUAUGAUAGUGAC 85.0% 2728 AGGCCAAUAAAAUUAAAUC 83.7%
2678 GCUUGCCGACCAAAGUCUC 84.9% 2729 AAAGGCCAAUAAAAUUAAA 83.7%
2679 CAAGGCCUAUGUUCUUGUA 84.9% 2730 GAAAAGGCCAAUAAAAUUA 83.7%
2680 GCAAUAUGAUAGUGACGAA 84.9% 2731 CGAACCUGAAUUAAGGUCA 83.7%
2681 UCAAGGCCUAUGUUCUUGU 84.9% 2732 UUUUUUGAGAAUAAAUCAG 83.7%
2682 CCAAAGAGUUUUUUGAGAA 84.8% 2733 AAGGCCAAUAAAAUUAAAU 83.7%
2683 AGGCCUAUGUUCUUGUAUG 84.8% 2734 GUUUUUGUAUGUGAGGACA 83.6%
2684 UAAGAAGUGCCAUAGGCCA 84.8% 2735 UUUUUGAGAAUAAAUCAGA 83.6%
2685 GGCCUAUGUUCUUGUAUGU 84.6% 2736 UUUUGAGAAUAAAUCAGAA 83.5%
2686 CUCAAAUGUCCAAAGAAGU 84.6% 2737 GUUUUUUGAGAAUAAAUCA 83.3%
2687 UCUCAAAUGUCCAAAGAAG 84.6% 2738 AGUUUUUUGAGAAUAAAUC 83.3%
2688 UUUCUCAAAUGUCCAAAGA 84.5% 2739 AAGAGUUUUUUGAGAAUAA 83.3%
2689 AACCGAACGGCUGCAUUGA 84.4% 2740 GAGUUUUUUGAGAAUAAAU 83.3%
2690 CCAAUAAAAUUAAAUCUGA 84.4% 2741 AGUGACGAACCUGAAUUAA 83.2%
2691 GCCAAUAAAAUUAAAUCUG 84.4% 2742 GUGACGAACCUGAAUUAAG 83.2%
2692 UUCUCAAAUGUCCAAAGAA 84.3% 2743 AAAUGGCCAACAGAGGCCU 83.2%
2693 AGGCUUGCCGACCAAAGUC 84.3% 2744 GGGGGCUAUAUGAAGCAAU 83.2%
2694 AGGUCACUUUCAAGCUGGA 84.3% 2745 GAAAUGGCCAACAGAGGCC 83.2%
2695 CUAUGUUCUUGUAUGUGAG 84.3% 2746 CAAAGAGUUUUUUGAGAAU 83.2%
2696 GGUCACUUUCAAGCUGGAU 84.3% 2747 AGAGUUUUUUGAGAAUAAA 83.2%
2697 UGUGGUAAACUUUGUGAGC 84.3% 2748 UGGACAGUAGUAAACAGUA 83.0%
2698 CGAACGGCUGCAUUGAGGG 84.3% 2749 GGACAGUAGUAAACAGUAU 83.0%
2699 AUGUGGUAAACUUUGUGAG 84.3% 2750 GGCCAAUAAAAUUAAAUCU 82.9%
2700 CCUAUGUUCUUGUAUGUGA 84.3% 2751 ACAAUGGCCUGGACAGUAG 82.9%
2701 GAUGUGGUAAACUUUGUGA 84。3% 2752 CAAUGGCCUGGACAGUAGU 82.9%
2702 GGCUUGCCGACCAAAGUCU 84.3% 2753 GCCUGGACAGUAGUAAACA 82.8%
2703 CCGAACGGCUGCAUUGAGG 84.2% 2754 AUGGCCUGGACAGUAGUAA 82.8%
2704 CAAUAAAAUUAAAUCUGAG 84.2% 2755 UGGCCUGGACAGUAGUAAA 82.8%
2705 GCCUAUGUUCUUGUAUGUG 84.2% 2756 ACAUAAGCGAUUUGAAGCA 82.8%
2706 ACAGAGGCCUCUGGGAUUC 84.1% 2757 GGGGGGCUAUAUGAAGCAA 82.8%
2707 ACCGAACGGCUGCAUUGAG 84.1% 2758 GGCCUGGACAGUAGUAAAC 82.8%
2759 GGAGAAAUACUGUGUCCUU 82.7% 2810 UGCAGAACUAAAGAGGGAA 82.0%
2760 GACAUAAGCGAUUUGAAGC 82.7% 2811 CGAACCGAACGGCUGCAUU 81.9%
2761 AGAAAUACUGUGUCCUUGA 82.7% 2812 CACACGAAAAGGGAAUAAA 81.9%
2762 UGGGAGAAAUACUGUGUCC 82.7% 2813 UUUCAUUUCAUCAAUGAAC 81.9%
2763 GGGAGAAAUACUGUGUCCU 82.7% 2814 UCGAACCGAACGGCUGCAU 81.8%
2764 AGACAUAAGCGAUUUGAAG 82.7% 2815 CCACACGAAAAGGGAAUAA 81.8%
2765 GAGAAAUACUGUGUCCUUG 82.7% 2816 UAGUGACGAACCUGAAUUA 81.8%
2766 CCUGGACAGUAGUAAACAG 82.7% 2817 UUCGAACCGAACGGCUGCA 81.8%
2767 GAGACAUAAGCGAUUUGAA 82.6% 2818 GCAGAACUAAAGAGGGAAG 81.8%
2768 AGAGACAUAAGCGAUUUGA 82.6% 2819 ACACGAAAAGGGAAUAAAU 81.7%
2769 GAGGAAAGCAGGGCUAGGA 82.6% 2820 UCUCUCACUGACCCGAGAC 81.7%
2770 AGGAAAGCAGGGCUAGGAU 82.6% 2821 CUCUCACUGACCCGAGACU 81.7%
2771 AUGGGAGAAAUACUGUGUC 82.6% 2822 UUUCAUGUAUUCAGAUUUU 81.6%
2772 UGAUUGAAGCCGAGUCCUC 82.5% 2823 GUUUCAUGUAUUCAGAUUU 81.6%
2773 UACCUUGAAAAGGCCAAUA 82.5% 2824 UGUUUCAUGUAUUCAGAUU 81.6%
2774 AUGAUUGAAGCCGAGACCU 82.5% 2825 AAAGCACAGAUUUGAAAUA 81.4%
2775 CAUAAGCGAUUUGAAGCAA 82.4% 2826 ACCACACGAAAAGGGAAUA 81.4%
2776 ACCUUGAAAAGGCCAAUAA 82.4% 2827 AAGAAAUGGCCAACAGAGG 81.4%
2777 AACAUGGCACCAGAGAAAG 82.4% 2828 AUUCGAACCGAACGGCUGC 81.4%
2778 UCACAGCAGAGGUGUCCCA 82.4% 2829 CAAGAAAUGGCCAACAGAG 81.4%
2779 CUAAAAACAUGAAGAAAAC 82.4% 2830 UUCAUUUCAUCAAUGAACA 81.4%
2780 UUCACAGCAGAGGUGUCCC 82.4% 2831 UAUGUUCUUGUAUGUGAGG 81.4%
2781 ACAACACCAAGACCAAUCA 82.4% 2832 UAAAGCACAGAUUUGAAAU 81.4%
2782 ACAUGGCACCAGAGAAAGU 82.4% 2833 GAUUCGAACCGAACGGCUG 81.4%
2783 AAUGGCCAACAGAGGCCUC 82.3% 2834 AUUUCAUCAAUGAACAAGG 81.3%
2784 AUGUCCAAAGAAGUGAAUG 82.3% 2835 UCAUUUCAUCAAUGAACAA 81.3%
2785 UUCUCUCACUGACCCGAGA 82.3% 2836 CAUUUCAUCAAUGAACAAG 81.3%
2786 UGUCCAAAGAAGUGAAUGC 82.3% 2837 AACCUGAAUUAAGGUCACU 81.3%
2787 UUGAAAAGGCCAAUAAAAU 82.3% 2838 AAUUAAGGUCACUUUCAAG 81.3%
2788 CAUGGCCCAUUGGGGAGUC 82.3% 2839 GAACCUGAAUUAAGGUCAC 81.3%
2789 AGCCACAUAAAUGGGAGAA 82.2% 2840 UCACUGGGGAGGAAAUGGC 81.2%
2790 AAUGGCCUGGACAGUAGUA 82.2% 2841 CAUUCACUGGGGAGGAAAU 81.2%
2791 CCACAUAAAUGGGAGAAAU 82.2% 2842 UCAUUCACUGGGGAGGAAA 81.2%
2792 ACAUAAAUGGGAGAAAUAC 82.2% 2843 UUCACUGGGGAGGAAAUGG 81.2%
2793 GAGCCACAUAAAUGGGAGA 82.2% 2844 AUUCACUGGGGAGGAAAUG 81.1%
2794 AGCAUGAUUGAAGCCGAGU 82.2% 2845 AAACCACACGAAAAGGGAA 81.1%
2795 UGACGAACCUGAAUUAAGG 82.2% 2846 CACUGGGGAGGAAAUGGCC 81.1%
2796 CAAAUGUCCAAAGAAGUGA 82.2% 2847 AACCACACGAAAAGGGAAU 81.1%
2797 GCAUGAUUGAAGCCGAGUC 82.2% 2848 UGGGGAAUGGAGAUGAGAC 81.0%
2798 UGAAAAGGCCAAUAAAAUU 82.2% 2849 UGAAUUAAGGUCACUUUCA 81.0%
2799 AUAAAUGGGAGAAAUACUG 82.2% 2850 AGCAUUGAAGACCCAAGUC 81.0%
2800 CAUAAAUGGGAGAAAUACU 82.2% 2851 GAAUUAAGGUCACUUUCAA 81.0%
2801 CACAUAAAUGGGAGAAAUA 82.2% 2852 GAAAAACCAAUUUAUAUGG 81.0%
2802 AAAUGUCCAAAGAAGUGAA 82.2% 2853 AUGGGGAAUGGAGAUGAGA 81.0%
2803 UAAAUGGGAGAAAUACUGU 82.2% 2854 CCGAAUUAAGGUCACUUUC 81.0%
2804 AAUGUCCAAAGAAGUGAAU 82.2% 2855 GCAUUGAAGACCCAAGUCA 81.0%
2805 CUUGAAAAGGCCAAUAAAA 82.1% 2856 GGGGAAUGGAGAUGAGACG 81.0%
2806 CUGGACAGUAGUAAACAGU 82.1% 2857 CCUGAAUUAAGGUCACUUU 80.9%
2807 GAACCGAACGGCUGCAUUG 82.1% 2858 CGAAAAACCAAUUUAUAUG 80.8%
2808 UUUUCAUUUCAUCAAUGAA 82.1% 2859 AAGGUCACUUUCAAGCUGG 80.7%
2809 GCCACAUAAAUGGGAGAAA 82.0% 2860 UGGCACCAGAGAAAGUAGA 80.7%
2861 AUGGCACCAGAGAAAGUAG 80.7% 2912 CCCAAGGGAGUGGAAGAAG 79.6%
2862 AGAAAUGGCCAACAGAGGC 80.7% 2913 GACCCAAGUCACGAAGGAG 79.5%
2863 AGAGCAUGAUUGAAGCCGA 80.6% 2914 GGUAUACAUUAAUACUGCC 79.5%
2864 CAUGGCACCAGAGAAAGUA 80.6% 2915 ACCCAAGUCACGAAGGAGA 79.5%
2865 AUUGAAGACCCAAGUCACG 80.6% 2916 UCAAUGCAUCCUGUGCAGC 79.4%
2866 CAUGAAGACCCAAGUCUAC 80.6% 2917 GAGGAAAUGGCCACAAAGG 79.4%
2867 UCUCAUUCACUGGGGAGGA 80.6% 2918 UGGAGAUGAGACGUUGCCU 79.4%
2868 UUCUCAUUCACUGGGGAGG 80.6% 2919 CAAUGCAUCCUGUGCAGCA 79.4%
2869 UUGAAGACCCAAGUCACGA 80.6% 2920 AGGAAAUGGCCACAAAGGC 79.4%
2870 CGGAGUCAAGAAAACUGCU 80.6% 2921 UGCAAGCAUGAGGAGGAAU 79.4%
2871 ACCUGAAUUAAGGUCACUU 80.6% 2922 AUGGAGAUGUGACGUUGCC 79.4%
2872 GAGAGCAUGAUUGAAGCCG 80.6% 2923 CUCAAUGCAUCCUGUGCAG 79.4%
2873 UAAGGUCACUUUCAAGCUG 80.5% 2924 ACAAUUGAAGAAAAAUUUG 79.3%
2874 GCGGAGUCAAUAAAACUGC 80.5% 2925 UGAUGAUCCAAAUGCACUG 79.3%
2875 GCACCAGAGAAAGUAGACU 80.4% 2926 CAAUUUAUGAAAAAUUUGA 79.3%
2876 CACCAGAGAAAGUAGACUU 80.4% 2927 AAUUGAAGAAAAAUUUGAA 79.3%
2877 UUAAAGCACAGAUUUGAAA 80.4% 2928 GCUCAAUGCAUCCUGUGCA 79.3%
2878 GGCACCAGAGAAAGUAGAC 80.4% 2929 UCAAACCACACGAAAAGGG 79.3%
2879 CCAGAGAAAGUAGACUUUG 80.4% 2930 UUAGAAGAAAAUUUGAAAU 79.3%
2880 GAGCAUGAUUGAAGCCGAG 80.4% 2931 GGAGAUGAGACGUUGCCUC 79.3%
2881 ACCAGAGAAAGUAGACUUU 80.3% 2932 AUUGAAGAAAAAUUUGAAA 79.3%
2882 CUCAUUCACUGGGGAGGAA 80.3% 2933 UGCUCAAUGCAUCCUGUGC 79.3%
2883 AACACCAAGACCAAUCAAA 80.3% 2934 GAGAUGAGACGUUGCCUCC 79.2%
2884 UAUAUGAUGCGAUCAAGUG 80.3% 2935 GAAUGGAGAUGAGACGUUG 79.2%
2885 CCUUGAAAAGGCCAAUAAA 80.3% 2936 GAAGACCCAAGUCACGAAG 79.2%
2886 CAGAGAAAGUAGACUUUGA 80.2% 2937 UGUUAAAGCACAGAUUUGA 79.2%
2887 UUUCUCAUUCACUGGGGAG 80.2% 2938 GGAAUGGAGAUGAGACGUU 79.2%
2888 ACACCAAGACCAAUCAAAC 80.2% 2939 UGAAGAAAAAUUUGAAAUC 79.2%
2889 UUAAGGUCACUUUCAAGCU 80.2% 2940 AAGACCCAAGUCACGAAGG 79.2%
2890 CACCAAGACCAAUCAAACU 80.2% 2941 GCAGCAAUGGACGAUUUUC 79.2%
2891 AUUAAGGUCACUUUCAAGC 80.2% 2942 AGAUGAGACGUUGCCUCCU 79.2%
2892 CAACACCAAGACCAAUCAA 80.2% 2943 GUCAACCACACGAAAAGG 79.2%
2893 UUUUCAGCGGAGUCAAGAA 80.1% 2944 CAGCAAUGGACGAUUUUCA 79.2%
2894 ACUAAAAACAUGAAGAAAA 80.1% 2945 UGCAGCAAUGGACGAUUUU 79.2%
2895 CAGCGGAGUCAAGAAAACU 80.1% 2946 GGGAAUGGAGAUGAGGCGU 79.2%
2896 UUUCAGCGGAGUCAAGAAA 80.1% 2947 AUGCACUGUUAAAGCACAG 79.1%
2897 AGCGGAGUCAAGAAAACUG 80.1% 2948 CUGUUAAAGCACAGAUUUG 79.1%
2898 UUCAGCGGAGUCAAGAAAA 80.1% 2949 AAUGCACUGUUAAAGCACA 79.1%
2899 UCAGCGGAGUCAAGAAAAC 80.1% 2950 AAUGGAGAUGAGACGUUGC 79.1%
2900 CCGAUGAUUGUCGAACUUG 79.7% 2951 AAAUGCACUGUUAAAGCAC 79.0%
2901 GCAAGCAUGAGGAGGAAUU 79.7% 2952 ACUGUUAAAGCACAGAUUU 79.0%
2902 CAUGAUUGAAGCCGAGUCC 79.7% 2953 CCAAAUGCACUGUUAAAGC 79.0%
2903 CGAUGAUUGUCGAACUUGC 79.7% 2954 UGAAGACCCAAGUCACGAA 79.0%
2904 AUUGGCAAGCAUGAGAGGA 79.7% 2955 GCACUGUUAAAGCACAGAU 79.0%
2905 UUGCAAGCAUGAGGAGGAA 79.7% 2956 CAAAUGCACUGUUAAAGCA 79.0%
2906 CAAGCAUGAGGAGGAAUUA 79.7% 2957 CACUGUUAAAGCACAGAUU 79.0%
2907 GAUCCAAAUGCACUGUUAA 79.7% 2958 UUCAUCAAUGAACAAGGCG 78.9%
2908 CCAAGGGAGUGGAAGAAGG 79.6% 2959 UGCACUGUUAAAGCACAGA 78.9%
2909 ACAUUGCAAGCAUGAGGAG 79.6% 2960 UCAUCAAUGAACAAGGCGA 78.9%
2910 AUCCAAAUGCACUGUUAAA 79.6% 2961 AUGUUUCAUGUAUUCAGAU 78.9%
2911 CAUUGCAAGCAUGAGGAGG 79.6% 2962 UCCAAAUGCACUGUUAAAG 78.8%
2963 GGGAGGAAAUGGCCACAAA 78.8% 3014 CAAGUGCAGAAACUAAGAG 77.9%
2964 CAAAGGCAGACUACACUCU 78.8% 3015 UUGUUGUUCAGGCUCUUAG 77.8%
2965 GGGGAGGAAAUGGCCACAA 78.8% 3016 GGGAGAGACAGAACAAUGG 77.8%
2966 UAUGUUUCAUGUAUUCAGA 78.8% 3017 CAAACCACACGAAAAGGGA 77.8%
2967 GGAGGAAAUGGCCACAAAG 78.8% 3018 GGAUACAGAAUGAGUUCAA 77.8%
2968 GUAUGUUUCAUGUAUUCAG 78.8% 3019 UCACAUUUUCUCAUUCACU 77.8%
2969 ACUGGGGAGGAAAUGGCCA 78.7% 3020 UGGAUACAGAAUGAGUUCA 77.8%
2970 UUUCAUCAAUGAACAAGGC 78.7% 3021 GGAGAGACAGAACAAUGGC 77.8%
2971 GACAACACCAAGACCAAUC 78.7% 3022 GAACAAUGGCCUGGACAGU 77.7%
2972 CUGGGGAGGAAAUGGCCAC 78.7% 3023 CAAGCUGGAUACAGAAUGA 77.7%
2973 AGCAAUGGACGAUUUUCAA 78.7% 3024 UACAAAUGAGUUUCAAGAA 77.7%
2974 UGGGGAGGAAAUGGCCACA 78.7% 3025 AGCAUGAGGAGGAAUUAUU 77.6%
2975 AUGAUAAGCAAGUGCAGAA 78.7% 3026 AUACAGAAUGAGUUCAACA 77.6%
2976 AAUUAUUUCACAGCAGAGG 78.6% 3027 AGGGGAGAGACAGAACAAU 77.6%
2977 GUUAAAGCACAGAUUUGAA 78.6% 3028 GAGGGGAGAGACAGAACAA 77.6%
2978 AAAACAUGAAGAAAACGAG 78.6% 3029 GGGGAGAGACAGAACAAUG 77.6%
2979 AAAAACAUGAAGAAAACGA 78.6% 3030 GCAUGAGGAGGAAUUAUUU 77.6%
2980 ACAUGAAGAAAACGAGUCA 78.6% 3031 UCAAGCUGAUACAGAAAUG 77.6%
2981 AUUAUUUCACAGCAGAGGU 78.6% 3032 UUU3GUUCAGGCUCUUAGG 77.6%
2982 UCAAAAUGAAAUGGGGAAU 78.6% 3033 UUAUUUCACAGCAGAGGUG 77.6%
2983 AAACAUGAAGAAAACGAGU 78.6% 3034 GAUACAGAAUGAGUUCAAC 77.6%
2984 UGAUAAGCAAGUGCAGAAC 78.6% 3035 AUUCACAUUUUCUCAUUCA 77.6%
2985 AACAUGAAGAAAACGAGUC 78.6% 3036 ACAGCAGAGGUGUCCCAUU 77.6%
2986 CAAAAUGAAAUGGGGAAUG 78.5% 3037 CAGCAGGUGUGUCCCAUUG 77.6%
2987 AUGAUCCAAAUGCACUGUU 78.4% 3038 CACACAUUUCACAUUUCUC 77.6%
2988 AGGAAUUAUUUCACAGCAG 78.4% 3039 AAGCAUGAGAAGGAAUUAU 77.6%
2989 GAAUUAUUUCACAGCAGAG 78.4% 3040 CUGGAUACAGAAUGAGUUC 77.5%
2990 GGAAUUAUUUCACAGCAGA 78.4% 3041 CAUUCACAUUUUCUCAUUC 77.5%
2991 GAUGAUCCAAAUGCACUGU 78.3% 3042 ACACACAUUCACAUUUUCU 77.5%
2992 AAAGCAGGGCUAGGAUUAA 78.3% 3043 CAUGAGGAGGAAUUAUUUC 77.5%
2993 GUUGUUCAGGCUCUUAGGG 78.3% 3044 AGACCCAAGUCACGAAGGA 77.5%
2994 AUGAGGAGGAAUUAUUUCA 78.3% 3045 ACAUUCACAUUUUCUCAUU 77.5%
2995 UGAGGAGGAAUUAUUUCAC 78.3% 3046 CACAGCAGAGGUGUCCCAU 77.5%
2996 GAUAAGCAAGUGCAGAACU 78.1% 3047 ACACAUUCACAUUUUCUCA 77.5%
2997 UUAAAGAGAAAGACAUGAC 78.1% 3048 GCUGGAUACAGAAUGAGUU 77.5%
2998 GAAAGCGGGCUUAGGAUUA 78.1% 3049 ACCAAGACCAAUCAAACUU 77.5%
2999 UAAGCAAGUGCAGAACUAA 78.1% 3050 AAGCUGGAUACAGAAUGAG 77.5%
3000 UGAUCCAAAUGCACUGUUA 78.1% 3051 AGCUGGAUACAGAAUGAGU 77.5%
3001 UACAUUGCAAGCAUGAGGA 78.1% 3052 UUUCACAGCAGGAGUGUCC 77.5%
3002 AGCAAGUGCAGAACUAAAG 78.0% 30G3 CACAUUUACAUUUUCUCAU 77.5%
3003 UAAAGAGAAAGACAUGACC 78.0% 3054 CCAAGACCAAUCAAACUUC 77.5%
3004 GCAAGUGCAGAACUAAAGA 78.0% 3055 GAUCCCUGGGUUUUGCUCA 77.4%
3005 AUAAGCAAGUGCAGAACUA 78.0% 3056 CCUGGGGUUUGCUCAAUGC 77.4%
3006 AAGCAAGUGCAGAACUAAA 78.0% 3057 UGAUCCCUGGGUUUUGCUC 77.4%
3007 UUCACAUUUUCUCAUUCAC 77.9% 3058 CAUAAUGAAGGGGGUAUAC 77.4%
3008 AUUUCACAGCAGAGGUGUC 77.9% 3059 ACAUUAAUAAGGGGGUAUA 77.4%
3009 AAGUGCAGAACUAAAGAGG 77.9% 3060 CCCUGGGUUUUGCUCAAUG 77.4%
3010 AGUGCAGAACUAAAGAGGG 77.9% 3061 AUCCCUGGGUUUUGCUCAA 77A%
3011 GUGCAGAACUAAAGAGGGA 77.9% 3062 ACAGAAUGAGUUCAACAAG 77.4%
3012 CUUGUUGUUCAGGCUCUUA 77.9% 3063 CAAGACCAAUCAAACUUCC 77.4%
3013 UAUUUCACAGCAGAGUUGU 77.9% 3064 UACAUAAUGAAGGGGGUAU 77.4%
3065 UCCCUGGGUUUUGCUCAAU 77.4% 3116 UGGAGGUAUGUUUCAUGUA 76.2%
3066 AGAGACAGAACAAUGGCCU 77.3% 3117 CACAAAGGCAGACUACACU 76.2%
3067 AGACAGAACAAUGGCCUGG 77.3% 3118 AAUGGAAGAUUUUGUGCGA 76.1%
3068 ACAGACAAUGGCCUGGGAC 77.3% 3119 AGAGAAAGUAGACUUUGAC 76.1%
3069 UGAUUGUCGACUUGCAGA 77.3% 3120 GAAAGUAGACUUUGACAAC 76.1%
3070 GAGACAGAACAAUGGCCUG 77.3% 3121 AAUGGCCACAAAGGCAGAC 76.0%
3071 AUGAUUGUCGAACUUGCAG 77.3% 3122 GUCACUUUCAAGCUGGAUA 76.0%
3072 GACAGAACAAUGGCCUGGA 77.3% 3123 UUCAACCCGAUGAUUGUCG 75.9%
3073 UAAAAACAUGAAGAAAACG 77.1% 3124 UCAGGCUCUUAGGGACAAC 75.9%
3074 GAGAGACAGAACAAUGGCC 77.1% 3125 CAGGCUCUUAGGGACAACC 75.9%
3075 AAACAAUUGAAGAAAAAUU 77.0% 3126 CCAUUGGGAAAGUCUGUAG 75.9%
3076 AACAAUUGAAGAAAAAUUU 77.0% 3127 AGGCUCUUAGGGACAACCU 75.9%
3077 GAGGAGGAAUUAUUUCACA 76.9% 3128 UCAACCCGAUGAUUGUCGA 75.9%
3078 GAAACAAUUGAAGAAAAAU 76.9% 3129 UCCAUUGGGAAAGUCUGUA 75.8%
3079 GAGAAAGUAGACUUUGACA 76.9% 3130 ACAUAUAUUACCUUGAAAA 75.7%
3080 AGGAGGAAUUAUUUCACAG 76.9% 3131 GAUUGGGAAAUCUGUUAGG 75.7%
3081 GGAGGAAUUAUUUCACAGC 76.9% 3132 UUGGGAAAGUCUGUAGGAC 75.7%
3082 AGAACAAUGGCCUGGACAG 76.9% 3133 AUUGGGAAAGUCUGUAGGA 75.7%
3083 CAGAACAAUGGCCUGGACA 76.9% 3134 CACAUAUAUUACCUUGAAA 75.7%
3084 GAACCUGGGACCUUUGAUC 76.8% 3135 UCCACAUAUAUUACCUUGA 75.7%
3085 AUAUGAUGCGAUCAAGUGC 76.8% 3136 CCACAUAUAUUACCUUGAA 75.7%
3086 CUUUCAAGCUGGAUACAGA 76.8% 3137 UAGAACUUGAUGAUCCAAA 75.6%
3087 UAUGAUGCCAUCAAGUGCA 76.8% 3138 UUUGCAGCAAUAUGCACUC 75.6%
3088 AUGAUGCGAUCAAGUGCAU 76.8% 3139 UUGCAGCAAUAUGCACUCA 75.6%
3089 GAUUCAUCGAAAUUGGAGU 76.8% 3140 AUUUGCAGCAAUAUGCACU 75.6%
3090 AACCUGGGACCUUUGAUCU 76.8% 3141 AAGUCCACAUAUAUUACCU 75.6%
3091 AGAAACAAUUUGAAGAAAA 76.7% 3142 UUGUCGAACUUGCAGAAAA 75.6%
3092 AAGAAACAAUUGAAGAAAA 76.7% 3143 GAAGUCCACAUAUAUUACC 75.6%
3093 GAGGAAUUAUUUCACAGCA 76.7% 3144 GAACUUUGAUAUCCAAAUG 75.6%
3094 CACUUUCAAGCUGGAUACA 76.5% 3145 GUAGAACUUGAUGAUCCAA 75.5%
3095 UCACUUUCAAGCUGGAUAC 76.5% 3146 AACUUGAUGAUCCAAAUGC 75.5%
3096 GAUGAUUGUCGAACUUGCA 76.5% 3147 GGAAAUGGCCACAAAGGCA 75.5%
3097 AGAAAGUGACUUUUGACAA 76.4% 3148 GAUUGUCGAACUUGCAGAA 75.5%
3098 CCACAAAGGCAGACUACAC 76.3% 3149 AUUGUCGAACUUGCAGAAA 75.5%
3099 ACUUUCAAGCUGGAUACAG 76.3% 3150 AGAACUUGAUGAUCCAAAU 75.5%
3100 GAAAUGGCCACAAAGGCAG 76.3% 3151 ACUUGAUGAUCCAAAUGCA 75.4%
3101 AUGGCCACAAAGGCAGACU 76.3% 3152 AACAAUGGCCUGGACAGUA 75.4%
3102 GCCACAAAGGCAGACUACA 76.3% 3153 UGCAGCAAUAUGCACUCAC 75.4%
3103 AAAGUAGACUUUGACAACU 76.3% 3154 GUCCACAUAUAUUACCUUG 75.3%
3104 GAGGUAUGUUUCAUGUAUU 76.3% 3155 CAUCAAUGAACAAGGCGAA 75.3%
3105 ACAAAGGCAGACUACACUC 76.3% 3156 AGUCCACAUAUAUUACCUU 75.3%
3106 UGGGCCACAAAGCAGACUA 76.3% 3157 AGAUUCAUCGAAAUUGGAG 75.3%
3107 UUCAAGCUGGAUACAGAAU 76.3% 3158 AUCAUUGAACAGGGCGAAU 75.2%
3108 AGGUAUGUUUCAUGUAUUC 76.3% 3159 ACCAAUUUAUAUGGAUUCA 75.2%
3109 AAGUAGACUUUGACAACUG 76.2% 3160 CCAAUUUAUAUGGAUUCAU 75.2%
3110 AAAUGGCCACAAAGGCAGA 76.2% 3161 CAAUUUAUAUGGAUUCAUC 75.2%
3111 AAAUGGAAGAUUUUGUGCG 76.2% 3162 UCAAUGAACAAGGCGAAUC 75.2%
3112 UUUCAAGCUGGAUACAGAA 76.2% 3163 ACCCGAUGAUUGUCGAACU 75.1%
3113 GGAGGUAUGUUUCAUGUAU 76.2% 3164 AACCCGAUGAUUGUCGAAC 75.1%
3114 GGUAUGUUUCAUGUAUUCA 76.2% 3165 AAUGAACAAGGCGAAUCAA 75.1%
3115 GGCCACAAAGGCAGACUAC 76.2% 3166 CAACCCGAUGAUUGUCGAA 75.1%
3167 AUGAGCAAGGCGAAUCAAU 75.1% 3218 UGCAACACUACUGGAGCUG 74.1%
3168 AAAAUUGAACCUUUUCUGA 74.9% 3219 AUAUAUUACCUUGAAAAGG 74.1%
3169 CCCGAUGAUUGUCGAACUU 74.9% 3220 CCAGAUUUGUAUGAUUACA 74.1%
3170 UGAACAAGGCGAAUCAAUA 74.9% 3221 UAUUACCUUGAAAAGGCCA 74.1%
3171 CAAUGAACAAGGCGAAUCA 74.9% 3222 UUGGUGAAAACAUGGCACC 74.1%
3172 UUUUGAGAAUAAAUCAGAG 74.8% 3223 GUGAAAACAUGGCACCAGA 74.1%
3173 UUGAAACAAACAAAUUUGC 74.7% 3224 AUUUGUAUGAUUACAAGGA 74.1%
3174 AUUGAAACAAACAAAUUUG 74.7% 3225 GAAAAAUUUGAAAUCUCAG 74.1%
3175 AAAACCAAUUUAUAUGGAU 74.7% 3226 AAAAAUUUGAAAUCUCAGG 74.1%
3176 UUGAGAAUAAAUCAGAAGC 74.7% 3227 GGUGAAAACAUGGCACCAG 74.1%
3177 AAAUUGAAACAAACAAAUU 74.7% 3228 CAUAUAUUACCUUGAAAAG 74.1%
3178 UGGGAAAGUCUGUAGGACU 74.7% 3229 UAUUAUACCUUGAAAAGGC 74.1%
3179 AAACCAAUUUAUAUGGAUU 74.7% 3230 CAGAUUUGUAUGAUUACAA 74.1%
3180 AAAAUUGAAACAAACAAAU 74.7% 3231 GCUUCAACCCGAUGAUUGU 74.0%
3181 AACCAAUUUAUAUGGAUUC 74.6% 3232 ACAGUAUCUGCAACACUAC 74.0%
3182 UGAAACAAACAAAUUUGCA 74.6% 3233 AACUCCUUCCUGACACAUG 74.0%
3183 AAUUGAAACAAACAAAUUU 74.6% 3234 AACAGUAUCUGCAACACUA 74.0%
3184 UGGUUCAACUCCUUCCUGA 74.6% 3235 AGAUUUGUAUGAUUACAAG 74.0%
3185 AGCUCGAUGAAAUUGGAGA 74.5% 3236 UAUAUAGUCAAACCACACG 74.0%
3186 GAGCUCGAUGAAAUUGGAG 74.5% 3237 AUAUAGUCAAACCACACGA 74.0%
3187 AUCGAGAGCAUGAUUGAAG 74.5% 3238 AGCAUGGCCCAUUGGGGAG 74.0%
3188 UGGAUAGAGCUCGAUGAAA 74.5% 3239 GAAGAAAAAUUUGAAAUCU 74.0%
3189 GGAUAGAGCUCGAUGAAAU 74.5% 3240 UGGUGAAAACAUGGCACCA 74.0%
3190 AAUCAGAAGCAUGGCCCAU 74.4% 3241 CUGCAGAGACAUAAGCGAU 74.0%
3191 AAAUCAGAAGCAUGGCCCA 74.4% 3242 UGCUUCAACCCGAUGAUUG 74.0%
3192 UCAAAUGUCCAAAGAAGUG 74.4% 3243 AAGAAAAAUUUGAAAUCUC 74.0%
3193 UGCAGAGACUAAAGCGAUU 74.3% 3244 AGAAAAAUUUGAAAUCUCA 74.0%
3194 UUGUGAGCAUGGAGUUUUC 74.3% 3245 ACUCCUUCCUGACACAUGC 73.9%
3195 AUAGAGCUCGAUGAAAUUG 74.3% 3246 UUCAACUCCUUCCUGACAC 73.9%
3196 UCGAGAGCAUGAUUGAAGC 74.3% 3247 GUUCAACUCCUUCCUGACA 73.9%
3197 AAAGGCAGACUACACUCUC 74.3% 3248 GCAUGGCCCAUUGGGGAGU 73.9%
3198 AAAAACCAAUUUAUAUGGA 74.3% 3249 UGAAAACAUGGCACCAGAG 73.9%
3199 GCAGAGACAUAAGCGAUUU 74.3% 3250 GUAAACAGUAUCUGCAACA 73.9%
3200 UAGAGCUCGAUGAAAUUGG 74.3% 3251 AAAACAUGGCACCAGAGAA 73.9%
3201 UUUGUGAGCAUGGAGUUUU 74.3% 3252 CAACUCCUUCCUGACACAU 73.9%
3202 AGAGCUCGAUGAAAUUGGA 74.3% 3253 UCAACUCCUUCCUGACACA 73.9%
3203 GAUAGAGCUCGAUGAAAUU 74.3% 3254 GGUUCAACUCCUUCCUGAC 73.9%
3204 CUUGGUGAAAACAUGGCAC 74.2% 3255 GAAAACAUGGCACCAGAGA 73.9%
3205 CAGAGACAUAAGCGAUUUG 74.2% 3256 UUGGUUCAACUCCUUCCUG 73.8%
3206 CAGAAGCAUGGCCCAUUGG 74.2% 3257 UAAACAGUAUCUGCAACAC 73.8%
3207 AGGCAGACUACACUCUCGA 74.2% 3258 AAACAGUAUCUGCAACACU 73.8%
3208 UCAGAAGCAUGGCCCAUUG 74.2% 3259 GUGCGACAAUGCUUCAACC 73.8%
3209 GAAGCAUGGCCCAUUGGGG 74.2% 3260 CUUCAACCCGAUGAUUGUC 73.8%
3210 AAGGCAGACUACACUCUCG 74.2% 3261 CUCGACGAGGAAAGCAGGG 73.8%
3211 AAGCAUGGCCCAUUGGGGA 74.2% 3262 AAUUUGAAAUCUCAGGAAC 73.8%
3212 AAAAUUUGAAAUCUCAGGA 74.1% 3263 UCGACGAGGAAAGCAGGGC 73.8%
3213 AUAUUACCUUGAAAAGGCC 74.1% 3264 UGCGACAAUGCUUCAACCC 73.8%
3214 AUCAGAAGCAUGGCCCAUU 74.1% 3265 AAAUUUGAAAUCUCAGGAA 73.8%
3215 CUGGAUAGAGCUCGAUGAA 74.1% 3266 AAACAUGGCACCAGAGAAA 73.8%
3216 GAUUUGUAUGAUUACAAGG 74.1% 3267 CUCCUUCCUGACACAUGCA 73.8%
3217 AGAAGCAUGGCCCAUUGGG 74.1% 3268 CUCUCGACGAGGAAAGCAG 73.7%
3269 GCAGACUACACUCUCGACG 73.7% 3320 AUUACAAGGAGAACAGAUU 73.1%
3270 ACUCUCGACGAGGAAAGCA 73.7% 3321 GUUCAAUAGCCUGUAUGCA 73.1%
3271 UGUGCGACAAUGCUUCAAC 73.7% 3322 AAUAAAUCAGAAGCAUGGC 73.1%
3272 CAGACUACACUCUCGACGA 73.7% 3323 GAUUACAAGGAGAACAGAU 73.1%
3273 AACUGCAGAGACAUAAGCG 73.7% 3324 UAAAUCAGAAGCAUGGCCC 73.0%
3274 AUAGUCAAACCACACGAAA 73.7% 3325 AUUUAUAUGGAUUCAUCAU 73.0%
3275 ACUGCAGAGACAUAAGCGA 73.7% 3326 UAUAUGGAUUCAUCAUAAA 73.0%
3276 UAUAGUCAAACCACACGAA 73.6% 3327 GCGACAAUGCUUCAACCCG 73.0%
3277 CACUCUCGACGAGGAAAGC 73.6% 3328 AAUUUAUAUGGAUUCAUCA 73.0%
3278 GGCAGACUACACUCUCGAC 73.6% 3329 UUUAUAUGGAUUCAUCAUA 73.0%
3279 UACACUCUCGACGAGGAAA 73.6% 3330 UUAUAUGGAUUCAUCAUAA 73.0%
3280 ACACUCUCGACGAGGAAAG 73.6% 3331 CGACAAUGCUUCAACCCGA 73.0%
3281 ACAGAUUCAUCGAAAUUGG 73.6% 3332 UUACAAGGAGAACAGAUUC 73.0%
3282 UGGGCUCUUGGUGAAAACA 73.5% 3333 AUGAUUACAAGGAGAACAG 72.9%
3283 UGAAAUCUCAGGAACUAUG 73.5% 3334 UAUGAUUACAAGGAGAACA 72.9%
3284 UAGUCAAACCACACGAAAA 73.5% 3335 AGAAUAAAUCAGAAGCAUG 72.9%
3285 UCUUGGUGAAAACAUGGCA 73.5% 3336 CGAGAGCAUGAUUGAAGCC 72.9%
3286 AUUACCUUGAAAAGGCCAA 73.5% 3337 GAGAAUAAAUCAGAAGCAU 72.9%
3287 GAAAUCUCAGGAACUAUGC 73.5% 3338 GAAUAAAUCAGAAGCAUGG 72.9%
3288 UCUCGACGAGGAAAGCAGG 73.5% 3339 CUAAAGUGGGCUCUUGGUG 72.9%
3289 ACUGAGUACAUAAUGAAGG 73.5% 3340 UGAUUACAAGGAGAACAGA 72.9%
3290 AACAGAUUCAUCGAAAUUG 73.5% 3341 GCAACACUACUGGAGCUGA 72.8%
3291 UUUGAAAUCUCAGGAACUA 73.5% 3342 UGAGAAUAAAUCAGAAGCA 72.8%
3292 CUGAGUACAUAAUGAAGGG 73.5% 3343 AAAUUGAGCAUUGAAGACC 72.8%
3293 UUGAAAUCUCAGGAACUAU 73.5% 3344 AAAACAUUCUUUGGAUGGA 72.8%
3294 AUUUGAAAUCUCAGGAACU 73.5% 3345 CAACUAAAGUGGGCUCUUG 72.8%
3295 AUAAAUCAGAAGCAUGGCC 73.3% 3346 ACUAAAGUGGGCUCUUGGU 72.8%
3296 GGCUCUUGGUGAAAACAUG 73.3% 3347 GUAUGAUUACAAGGAGAAC 72.8%
3297 CUACACUCUCGACGAGGAA 73.3% 3348 AACUAAAGUGGGCUCUUGG 72.8%
3298 UUACCUUGAAAAGGCCAAU 73.3% 3349 AAUUGAGCAUUGAAGACCC 72.8%
3299 GGGCUCUUGGUGAAAACAU 73.3% 3350 AAACAUUCUUUGGAUGGAA 72.8%
3300 GACUACACUCUCGACGAGG 73.3% 3351 AUUGAGUACAUUGCAAGCA 72.7%
3301 ACUACACUCUCGACGAGGA 73.3% 3352 GUGGGCUCUUGGUGAAAAC 72.7%
3302 CUCUUGGUGAAAACAUGGC 73.3% 3353 UCAACUAAAGUGGGCUCUU 72.7%
3303 GCUCUUGGUGAAAACAUGG 73.3% 3354 AAUUGAGUACAUUGCAAGC 72.7%
3304 UGGUAGAACUUGAUGAUCC 73.3% 3355 GUCAACUAAAGUGGGCUCU 72.7%
3305 AUGAAGAAAACGAGUCAAC 73.2% 3356 AGUCAACUAAAGUGGGCUC 72.7%
3306 AGACUACACUCUCGAC3AG 73.2% 3357 CCAAUUGAGUACAUUGCAA 72.7%
3307 ACAAGGAGAACAGAUUCAU 73.2% 3358 CAAUUGAGUACAUUGCAAG 72.7%
3308 CAAUGCUUCAACCCGAUGA 73.2% 3359 UGUCAUGGAAGCAAGUAUU 72.6%
3309 GACAAUGCUUCAACCCGAU 73.2% 3360 AGUGGGCUUUUGGUGAAAA 72.6%
3310 ACAAUGCUUCAACCCGAUG 73.2% 3361 AAGUGGGCUCUUGGUGAAA 72.6%
3311 UGUUCAAUAGCCUGUAUGC 73.2% 3362 AGAACUAAAGAGGGAAGGC 72.6%
3312 AGUCAAACCACACGAAAAG 73.2% 3363 GAACUAAAGAGGGAAGGCG 72.6%
3313 UACAAGGAGAACAGAUUUA 73.2% 3364 CUGUCAUGGAAGCAAGUAU 72.5%
3314 GUGUUCAAUAGCCUGUAUG 73.2% 3365 UCGAUGAAAUUGGAGAGGA 72.5%
3315 AAUGCUUCAACCCGAUGAU 73.2% 3366 GCCUGCGAGCUAACUGAUU 72.5%
3316 GGUAGAACUUGAUGAUCCA 73.2% 3367 CUCGAUGAAAUUGGAGAGG 72.5%
3317 AUGCUUCAACCCGAUGAUU 73.2% 3368 UUGAGUACAUUGCAAGCAU 72.5%
3318 UGAAGAAAACGAGUCAACU 73.2% 3369 CCUGCGAGCUAACUGAUUC 72.5%
3319 UAAAGUGGGCUCUUGGUGA 73.1% 3370 CUGCGAGCUAACUGAUUCA 72.5%
3371 UUGAGCAUUGAAGACCCAA 72.4% 3422 GACAACUGCAGAGACAUAA 71.9%
3372 AGGAGAACAGAUUCAUCGA 72.4% 3423 UUCCUGACACAUGCAUUAA 71.9%
3373 CAAGGAGAACAGAUUCAUC 72.4% 3424 AGAACAGAUUCAUCGAAAU 71.9%
3374 CAGAUUCAUCGAAAUUGGA 72.4% 3425 ACUAAAGAGGGAAGGGCGA 71.9%
3375 AUUUGAAGGCCUAUGUUCU 72.4% 3426 GAAUGAGUUCAACAAGGCC 71.9%
3376 UUUCAAGGCCUAUGUUCUU 72.4% 3427 GACUUUGACAACUGCAGAG 71.7%
3377 AAGGAGAACAGAUUCAUCG 72.4% 3428 CUUUGACAACUGCAGAGAC 71.7%
3378 CCCCAAUUGAGUACAUUGC 72.3% 3429 AGGAAUGACACAGAUGUGG 71.7%
3379 UGAGUACAUUGCAAGCAUG 72.3% 3430 GAAUGACACAGAUGUGGUA 71.7%
3380 UGAGCAUUGAAGACCCAAG 72.3% 3431 CAACUGCAGAAACAUAAGC 71.7%
3381 ACUUUGUGAGCAUGGAGUU 72.3% 3432 GGAAUGACACAGAUGUGGU 71.7%
3382 GAGUACAUUGCAAGCAUGA 72.3% 3433 GAAGAAAACGAGUCAACUA 71.7%
3383 AUGACACAGAUGUGGUAAA 72.3% 3434 AAGAAAACGAGUCAACUAA 71.7%
3384 AAUGACACAGAUGUGGUAA 72.3% 3435 ACUUUGACAACUGCAGAGA 71.7%
3385 UUCAACAAGGCCUGCGAGC 72.3% 3436 AACGAGUCAACUAAAGUGG 71.6%
3386 GUCCAAAGAAGUGAAUGCC 72.3% 3437 UCCUGACACAUGCAUUAAA 71.6%
3387 UUCAAGGCCUAUGUUCUUG 72.3% 3438 CCAGGAAAGCAGGGCUAGG 71.6%
3388 UCAACAAGGCCUGCGAGCU 72.3% 3439 GGACAAACGGAACAUCAAA 71.6%
3389 AAACUUUGUGAGCAUGGAG 72.3% 3440 AGGACAAACGGAACAUCAA 71.6%
3390 AACUUUGUGAGCAUGGAGU 72.3% 3441 ACGAGUCAACUAAAGUGGG 71.6%
3391 GCCCCAAUUGAGUACAUUG 72.3% 3442 ACGAGGAAAGCAGGGCUAG 71.6%
3392 AGUACAUUGGAAGCAUGAG 72.3% 3443 ACACAUGCAUUAAAAUAGU 71.6%
3393 CCCAAUUGAGUACAUUGCA 72.3% 3444 CCUGACACAUGCAUUAAAA 71.6%
3394 UUUGUAUGAUUACAAGGAG 72.3% 3445 UGACACAUGCAUUAAAAUA 71 5%
3395 GGCCUGCGAGCUAACUGAU 72.2% 3446 GACAAACGGAACAUCAAAG 71.5%
3396 AAGGCCUGCGAGCUAACUG 72.2% 3447 UAGUAAACAGUAUCUGCAA 71.5%
3397 AUUGAGCAUUGAAGACCCA 72.2% 3448 GUAGUAAACAGUAUCUGCA 71.5%
3398 GAGUUCAACAAGGCCUGCG 72.2% 3449 AACUAAAGAGGGAAGGCGA 71.5%
3399 GAGCAUUGAAGACCCAAGU 72.2% 3450 AGAAAACGAGUCAACUAAA 71.5%
3400 UUGACAACUGCAGAGACAU 72.2% 3451 GACGAGGAAAGCAGGGCUA 71.5%
3401 GUUCAACAAGGCCUGCGAG 72.2% 3452 CACAUGCAUUAAAAUAGUU 71.5%
3402 AGUUCAACAAGGCCUGCGA 72.2% 3453 AAAACGAGUCAACUAAAGU 71.4%
3403 UUUGACAACUGCAGAGACA 72.2% 3454 UAAGGAAUGACACAGAUGU 71.4%
3404 GCUGGAUGAAAUUGGAGAG 72.2% 3455 CCACUGAGUACAUAAUGAA 71.4%
3405 AGGCCUGCGAGCUAACUGA 72.2% 3456 CGAGUCAACUAAAGUGGGC 71.4%
3406 UGAGUUCAACAAGGCCUGC 72.2% 3457 AAACGAGUCAACUAAAGUG 71.4%
3407 UCCUUCCUGACACAUGCAU 72.1% 3458 CUGACACAUGCAUUAAAAU 71.4%
3408 AUGAGUUCAACAAGGCCUG 72.1% 3459 GCCACUGAGUACAUAAUGA 71.4%
3409 AAUGAGUUCAACAAGGCCU 72.1% 3460 GUACAUUGCAAGCAUGAGG 71.4%
3410 CCUUCCUGACACAUGCAUU 72.1% 3461 CUUUGUGAGCAUGGAGUUU 71.3%
3411 AACAAGGCCGCUGAGCUAA 72.0% 3462 UGAGGACAAACGGAACAUC 71.3%
3412 CUUCCUGACACAUGCAUUA 72.0% 3463 GAGGACAAACGGAACAUCA 71.3%
3413 CAAGGCCUGCGAGCUAACU 72.0% 3464 AAGGAAUGAGACCAGUGUG 71.3%
3414 GGAGAACAGAUUCAUCGAA 72.0% 3465 UUAAGGAAUGACACAGAUG 71.3%
3415 CAACAAGGCCUGCGAGCUA 72.0% 3466 AGUAAACAGUAUCUGCAAC 71.3%
3416 ACAAGGCCUGCGAGCUAAC 72.0% 3467 CAUGAAGAAAACGAGUCAA 71.2%
3417 ACAACUGCAGAGACAUAAG 71.9% 3468 CACUGAGUACAUSAUGAAG 71.2%
3418 GAGAACAGAUUCAUCGAAA 71.9% 3469 CAGUAGUAAACAGUAUCUG 71.2%
3419 GAACAGAUUCAUCGAAAUU 71.9% 3470 GACAGUAGUAAACAGUAUC 71.2%
3420 UGACAACUGCAGAGACAUA 71.9% 3471 AGUAGUAAACAGUAUCUGC 71.2%
3421 CUAAAGAGGGAAGGCGAAA 71.9% 3472 CAAUGGACGAUUUUCAACU 71.2%
3473 ACAGUAGUAAACAGUAUCU 71.2% 3505 AUUCAUCGAAAUUGGAGUG 70.7%
3474 GCAAUGGACGAUUUUCAAC 71.2% 3506 UCAUCGAAAUUGGAGUGAC 70.7%
3475 GACACAUGCAUUAAAAUAG 71.1% 3507 CAAGUCACGAAGGAGAAGG 70.6%
3476 GUCAUGGAAGCAAGUAUUG 71.1% 3508 UCAUCAUAAAAGGAAGAUC 70.6%
3477 AAAGUGGGCUCCUUUGGAA 71.1% 3509 UGGACGADUUCUAACUAAU 70.6%
3478 UAUGUGAGGACAAACGGAA 71.0% 3510 UCCAAAUUCUCCCUGAUGG 70.6%
3479 GUGAGGACAAACGGAACAU 71.0% 3511 AGUCACGAAGGAGAAGGGA 70.6%
3480 UCCUCCUGAUGGAUGCUUU 71.0% 3512 CAAAUUCCUCCUGAUGGAU 70.6%
3481 CGACGAGGAAGCGAGGGCU 71.0% 3513 CCAAAUUCCUCCUGAUGGA 70.6%
3482 UUCCUCCUGAUGGAUGCUU 71.0% 3514 AAUGGACGAUUUUCAACUA 70.6%
3483 UGUGAGGACAAACGGAACA 71.0% 3515 CCAAGUCACGAAGGAGAAG 70.6%
3484 AUGUGAGGACAAACGGAAC 71.0% 3516 AUGGACGAUUUUCAACUAA 70.6%
3485 UUGUAUGUGAGGACAAACG 70.9% 3517 AAUUCCUCCUGAUGGAUGC 70.6%
3486 UGUAUGUGAGGACAAACGG 70.9% 3518 UUCAUCAUAAAAGGAAGAU 70.6%
3487 GUGUAGGAGGACAAAGGGA 70.9% 3519 GUCACGAAGGAGAAGGGAU 70.6%
3488 AGUAUCUGCAACACUACUG 70.8% 3520 AAAUUCCUCCUGAUGGAUG 70.6%
3489 GAGCCACUGAGUACAUAAU 70.8% 3521 CAUUGGAAGCAAGUAUUUC 70.6%
3490 AGCCACUGAGAGUAUAAUG 70.8% 3522 AUGGAAGCAAGUAUUGUCA 70.6%
3491 AGAGCCCUGAGUGUCAUAA 70.8% 3523 GGAAAGCAGGGGCUAGAAU 70.6%
3492 CAGUAUCUGCAACACUACU 70.8% 3524 AAAAUCUCAGGAACAUGCG 70.5%
3493 GUAUCUGCAACACUACUGG 70.8% 3525 CCCAAGUCACGAAGGAGAA 70.5%
3494 GAAAACGAGUCAACUAAAG 70.7% 3526 GAUUGAAGCCGAGUCCUCG 70.4%
3495 UUCAUCGAAAUUGGAGUGA 70.7% 3527 CGAUGAAAUUGGAGAGGAC 70.1%
3496 AGACUUUGACAACUGCAGA 70.7% 3528 AUUCCUCCUGAUGGAUGCU 70.1%
3497 AGUAGACUUUGACAACUGC 70.7% 3529 GUCCAAAUUCCUCCUGAUG 70.1%
3498 GGAAGCAAGUAUUGUCAGA 70.7% 3530 GGUCCAAAUUCCUCCUGAU 70.1%
3499 UAGACUUUGACAACUGCAG 70.7% 3531 UGAGCAUGGAGUUUUCUCU 70.0%
3500 GUAGACUUUGAUAACUGCA 70.7% 3532 UCAUAAAAGGAAGAUCUCA 70.0%
3501 UGGAAGCAAGUAUUGUCAG 70.7% 3533 AAGAAGUGCCAUAGGCCAA 70.0%
3502 CUUGUAUGUGAGGACAAAC 70.7% 3534 CGGUCCAAAUUCCUCCUGA 70.0%
3503 CAUCGAAAUUGGAGUGACA 70.7% 3535 AUCAUAAAAGGAAGAUCUC 70.0%
3504 UCAUGGAGCAAGUGUAUGU 70.7% 3536 UGUGAGCAUGGAGUUUUCU 70.0%
表2-4在表1-4所列甲型流感片段2(HA)序列中以至少70%存在的保守19-mer序列
Seq
ID 序列 百分比
3537 GCAUCACUCCAAAUGGAAG 70.4%
3538 UGCAUCACUCCAAAUGGAA 70.4%
3539 AUGCAUCACUCCAAAUGGA 70.4%
3540 AAUGCAUCACUCCAAAUGG 70.3%
3541 GAAUGCAUCACUCCAAAUG 70.3%
3542 UCACUCCAAAUGGAAGCAU 70.3%
3543 UGUUACCCUUAUGAUGUGC 70.2%
3544 CAUCACUCCAAAUGGAAGC 70.2%
3545 AUCACUCCAAAUGGAAGCA 70.2%
表2-5在表1-5所列甲型流感片段2(NP)序列中以至少70%存在的保守
19-mer序列
ID 序列 百分比 3596 GAAAUGCUGAGAUCGAAGA 91.2%
3597 GAACCCAGGAAAUGCUGAG 91.2%
3546 UCUUAUUCUUCGGAGACA 98.0% 3598 CCAGGAAAUGCUGAGAUCG 91.1%
3547 AUUUCUUCGGAGACAAUGC 97.9% 3599 AGGAAUGCUUGAGAUCGAA 91.1%
3548 UAUUUCUUCGGAGACAAUG 97.9% 3600 CAGGAAUGCUUGAGAUCGA 91.1%
3549 UUAUUUCUUCGGAGACAAU 97.9% 3601 GGAAAUGCUGAGAUCGAAG 91.1%
3550 CUUAUUUCUUCGGAGACAA 97.9% 3602 UGGAUCAAGUGAGAGAAAG 90.7%
3551 UUUCUUCGGAGACAAUGCA 97.8% 3603 UAUGAGAAUGUGUGCAACA 90.4%
3552 AUGAAGGAUCUUAUUUCUU 97.6% 3604 AUGAGAGAAUGUGCAACAU 90.4%
3553 AAUGAAGGAUCUUAUUUCU 97.6% 3605 GAAAAUUUCAAACAGCUGC 90.1%
3554 GAAGGAUCUUAUUUCUUCG 97.5% 3606 GGAAAAUUUUCAACAGCUG 90.1%
3555 AAGGAUCUUAUUUCUUCGG 97.5% 3607 AAAGGAAAAUUUCAAACAG 90.0%
3556 UGAAGGAUCUUAUUUCUUC 97.4% 3608 AGGAAAAUUUCAAACAGCU 90.0%
3557 UAAUGAAGGAUCUUAUUUC 97.3% 3609 AAGGAAAAUUUCAAACAGC 90.0%
3558 UUCUUCGGAGACAAUGCAG 96.5% 3610 CCCAGGAAAUGCUGAGAUC 90.0%
3559 UCUUCGGAGACAAUGCAGA 96.4% 3611 AAAAUUUCAAACAGCUGCA 89.7%
3560 GAUCUUAUUUCUUACGGAA 96.0% 3612 CUUAUGAACAGAUGGAAAC 89.5%
3561 GGAUCUUAUUUCUUCGGAG 96.0% 3613 UCUUAUGAACAGAUGGAAA 89.5%
3562 AUCUUAUUUCUUCGGAGAC 96.0% 3614 UAUGAACAGAUGGAAACUG 89.5%
3563 AGGAUCUUAUUUCUUCGGA 95.8% 3615 AGGGAACUCGUCCUUUAUG 89.5%
3564 AGUAAUGAAGGAUCUUAUU 95.4% 3516 GGGAACUCGUCCUUUAUGA 89.5%
3565 GUUAAUGAAGAUCUAUUUU 95.4% 3617 UUAUGAACAGAUGGAAACU 89.1%
3566 AUGAGUAAUGAAGGAUCUU 95.3% 3618 AUUCUGCUGCAUUUGAAGA 89.0%
3567 UGAGUAAUGAAGGAUCUUA 95.3% 3619 UGAGGGAACUCGUCCUUUA 88.8%
3568 GAGUAUUGAAGGAUCUUAU 95.3% 3620 GAGGGAACUCGUCCUUUAU 88.7%
3569 UACAAAUUGCUUCAAAUGA 93.7% 3621 UUCUGCUGCAUUUGAAGAU 88.6%
3570 AAUUUCAAACAGCUGCACA 93.5% 3622 GAGGAAACACUAAUCAACA 88.2%
3571 AAAUUUCAAACAGCUGCAC 93.5% 3623 GGAGGAAACACUAAUCAAC 88.2%
3572 GUACAAAUUGCUUCAAAUG 93.4% 3624 AGUGGAGGAAACACUAAUC 88.2%
3573 AUGGUGCUCUCUGCUUUUG 93.3% 3625 GUGGAGGAAACACUAAUCA 88.1%
3574 UGGUGCUCUCUGCUUUUGA 93.3% 3626 UGGAGGAAACACUAAUCAA 88.1%
3575 CAAGGCACCAAACGGUCUU 93.2% 3627 GAGGGUCGUUGCUACACAA 87.8%
3576 AAGGCACCAAACGGUCUUA 93.2% 3628 AGAGGGUCAGUUGCUCACA 87.8%
3577 AGAGAAUGUGCAACAUUCU 93.0% 3629 CAGCUGGUGUGGAUGGCAU 87.6%
3578 GAGAGAAUGUGCAACAUUC 93.0% 3630 AGCUGGUGUGGAUGGCAUG 87.6%
3579 AUUUCAAACAGCUGCACAA 92.7% 3631 GCUGGUGUGGAUGGCAUGC 87.5%
3580 UUUCAAACAGCUGCACAAA 92.7% 3632 ACUUCGAAAAAGAGGGAUA 87.4%
3581 GGAACCCAGGAAAUGCUGA 92.2% 3633 CAACGAACCCGAUCGUGCC 87.2%
3582 CGAACCCGAUCGUGCCCUC 92.1% 3634 GCAACGAACCCGAUCGUGC 87.2%
3583 CGGAACCCAGGAAAUGCUG 92.1% 3635 AUGAGGGCAGAAAUCAUAA 87.2%
3584 AAUGCUGAGAUCGAAGAUC 91.7% 3636 UCAGCUGGUGUGGAUGGCA 87.1%
3585 AUGCUGAGAUCGAAGAUCU 91.7% 3637 GUCAGCUGGUGUGGAUGGC 87.1%
3586 GAUUCUACAUCCAAAUGUG 91.6% 3638 GGCAACGAACCCGAUCGUG 87.1%
3587 GCUGAGAUCGAAGAUCUCA 91.5% 3639 AGUCAGCUGGUGUGGAUGG 87.1%
3588 UCAUGGCAGCAUUCACUGG 91.5% 3640 UUAAACAAGCUGCACAAAG 87.0%
3589 AAUGGUGCUCUCUGCUUUU 91.5% 3641 UUCUACAUCCAAAUGUGCA 86.9%
3590 ACCCAGGAAAUGCUGAGAU 91.4% 3642 UCUACAUCCAAAUGUGCAC 86.9%
3591 UCAGACAUGAGGGCAGAAA 91.4% 3643 CAUGAGGGCAGAAAUCAUA 86.8%
3592 UGCUGAGAUCGAAGAUCUC 91.4% 3644 ACAUGAGGGCAGAAAUCAU 86.8%
3593 CAGACAUGAGGGCAGAAAU 91.4% 3645 GACAUGAGGGCAGAAAUCA 86.8%
3594 AACCCAGGAAAUGCUGAGA 91.4% 3646 GAGUACAAAUUGCUUCAAA 86.7%
3595 AAAUGCUGAGAUCGAAGAU 91.2% 3647 GCACACAAGAGUCAGCUGG 86.7%
3648 GAGAAUCCAGCACACAAGA 86.7% 3702 CGAGAAUCCAGCACACAAG 85.1%
3649 CACACAAGAGUCAGCUGGU 86.7% 3703 AACACUAAUCAACAGAGGG 85.1%
3650 GGAGUACAAAUUGCUUCAA 86.7% 3704 AGGAAACACUAAUCAACAG 85.1%
3651 AGAAUCCAGCACACAAGAG 86.7% 3705 GAAACACUAAUCAACAGAG 85.0%
3652 CAGCACACAAGAGUCAGCU 86.6% 3706 AGGAGUACAAAUUGCUUCA 85.0%
3653 AGUACAAAUUGCUUCAAAU 86.6% 3707 GAGGAGACAUAAUUGCUUC 85.0%
3654 CCAGCACACAAGAGUCAGC 86.6% 3708 AGAGGAGUACAAAUUGCUU 85.0%
3655 AUUCUACAUCCAAAUGUGC 86.6% 3709 AAACACUAAUCAACAGAGG 85.0%
3656 ACAAGAGUCAGCUGGUGUG 86.5% 3710 UAUUGAGAGGGUCAGUUGC 84.9%
3657 AGCACACAAGAGUCAGCUG 86.5% 3711 AACCCGAUCGUGCCCUCUU 84.6%
3658 UGCUUAUGAGAGAAUGUGC 86.5% 3712 CCCGAUCGUGCCCUCUUUU 84.6%
3659 CAAGAGUCAGCUGGUGUGG 86.5% 3713 GAACCCGAUCGUGCCCUCU 84.6%
3660 AGAGUCAGCUGGUGUGGAU 86.5% 3714 ACCCGAUCGUGCCCUCUUU 84.6%
3661 GAGUCAGCUGGUGUGGAUG 86.5% 3715 CGAUCGUGCCCUCUUUUGA 84.5%
3662 CACAAGAGUCAGCUGGUGU 86.5% 3716 CCGAUCGUGCCCUCUUUUG 84.5%
3663 GCUUAUGAGAGAAUGUGCA 86.5% 3717 CUAGAGGAGUACAAAUUGC 84.2%
3664 CUUAUGAGAGAAUGUGCAA 86.5% 3718 ACUAGAGGAGUACAAAUUG 84.1%
3665 AAGAGUCAGCUGGUGUGGA 86.5% 3719 UAGAGGAGUACAAAUUGCU 84.1%
3666 CCAAACGGUCUUAUGAACA 86.4% 3720 AGAUGGAAACUGAUGGGGA 84.0%
3667 GGCACCAAACGGUCUUAUG 86.4% 3721 CAGAUGGAAACUGAUGGGG 84.0%
3668 GCACCAAACGGUCUUAUGA 86.4% 3722 AGUGGGUACGACUUCGAAA 84.0%
3669 ACCAAACGGUCUUAUGAAC 86.4% 3723 ACAGAUGGAAACUGAUGGG 84.0%
3670 AGGCACCAAACGGUCUUAU 86.4% 3724 CUAAUCAACAGAGGGCCUC 84.0%
3671 UGAGAGAAUGUGCAACAUU 86.4% 3725 ACUAAUCAACAGAGGGCCU 84.0%
3672 AAUCCAGCACACAAGAGUC 86.3% 3726 CAGUGGGUACGACUUCGAA 83.9%
3673 ACACAAGAGUCAGCUGGUG 86.3% 3727 CCAGUGGGUACGACUUCGA 83.9%
3674 AUCCAGCACACAAGAGUCA 86.3% 3728 UGAUGGAAGGUGCAAAACC 83.8%
3675 CACCAAACGGUCUUAUGAA 86.3% 3729 AAGAAGAAAUAAGGCGAAU 83.8%
3676 AGACAUGAGGGCAGAAAUC 86.2% 3730 GUGGGUACGACUUCGAAAA 83.8%
3677 GACUUCGAAAAAGAGGGAU 86.2% 3731 AAAGAAGAAAUAAGGCGAA 83.8%
3678 GAAUCCAGCACACAAGAGU 86.2% 3732 GAUGGAAGGUGCAAAACCA 83.7%
3679 CAGAGGACAAGAGCUCUUG 86.1% 3733 UGUGCUCUCUGAUGCAGGG 83.7%
3680 CGGUCUUAUGAACAGAUGG 86.1% 3734 AUAUUGAGAGGGUCAGUUG 83.7%
3681 AGAGGACAAGAGCUCUUGU 86.1% 3735 AUGUGCUCUCUGAUGCAGG 83.7%
3682 ACGGUCUUAUGAACAGAUG 86.1% 3736 AUGGUAGGUGCAAAACCAG 83.7%
3683 UACGACUUCGAAAAAGAGG 86.1% 3737 UGGAAGGUGCAAAACCAGA 83.7%
3684 GGUCUUAUGAACAGAUGGA 86.1% 3738 CACUAAUCAACAGAGGGCC 83.6%
3685 ACGACUUCGAAAAAGAGGG 86.1% 3739 AUGAUGGAAGGUGCAAAAC 83.6%
3686 AACGGUCUUAUGAACAGAU 86.0% 3740 ACCAGAGGACAAGAGCUCU 83.5%
3687 AAACGGUCUUAUGAACAGA 86.0% 3741 UACCAGAGGACAAGAGCUC 83.5%
3688 CAACGGUCUUUAUGAACAG 86.0% 3742 AGAUGAUUGAUGGAAUUGG 83.2%
3689 UUAUGAGAGAAUGUGCAAC 86.0% 3743 CCAGAGGACAAGAGCUCUU 83.2%
3690 CGACUUCGAAAAAGAGGGA 85.8% 3744 AAGAUGAUUGAUGGAAUUG 83.2%
3691 UCCAGCACACAAGAGUCAG 85.7% 3745 GAAAUAAGGCGAAUCUGGC 83.0%
3692 AUGAACAGAUGGAAACUGA 85.7% 3746 AAAUAAGGCGAAUCUGGCG 83.0%
3693 UGAACAGAUGGAAACUGAU 85.6% 3747 GAGAGGGUCAGUUGCUCAC 83.0%
3694 AACAGAUGGAAACUGAUGG 85.6% 3748 UGAGAGGUCAGGUUGCUGA 83.0%
3695 GUCUUUAUGAACAGAUGAA 85.6% 3749 CUGAACUUAAACUCAGUGA 82.9%
3696 CUGAGAUCGAAGAUCUCAU 85.6% 3750 UGAACUUAAACUCAGUGAU 82.9%
3697 GAACAGAUGGUAACUGAUG 85.6% 3751 UUGAGAGGGUCAGUUGCUC 82.9%
3698 GGAAACACUAAUCAACAGA 85.5% 3752 ACUGACUUAAACUCAGUUG 82.9%
3699 ACGAGAAUCCAGCACACAA 85.4% 3753 CAAACAGCUGCACAAAGAG 82.8%
3700 AACGAGAAUCCAGCACACA 85.4% 3754 AUUGGAGAGGGUCAGUUCU 82.8%
3701 ACACUAAUCAACAGAGGGC 85.1% 3755 AAACAGCUGCACAAAGAGC 82.8%
3756 UCAGUUGCUCACAAAUCUU 82.8% 3810 AGGACAAGAGCUCUUGUUC 79.1%
3757 UGGGUACGACUUCGAAAAA 82.7% 3811 UCUGGAGAGGUGAGAAUGG 78.9%
3758 CAGUUGCUCACAAAUCUUG 82.7% 3812 UUCUGGAGAGGUGAGAAUG 78.9%
3759 GGGUACGACUUCGAAAAAG 82.7% 3813 CCCAGCGCGGGGAAAGAUC 78.9%
3760 GGUACGACUUCGAAAAAGA 82.7% 3814 CCAGCGCGGGGAAAGAUCC 78.9%
3761 UCAAACAGCUGCACAAAGA 82.7% 3815 UACUGGGCCAUAAGGACCA 78.8%
3762 GUACGACUUCGAAAAAGAG 82.6% 3816 ACUGGGCCAUAAGGACCAG 78.7%
3763 GAUGAGGGAACUCGUCCUU 82.5% 3817 GAGGACAAGAGCUCUUGUU 78.3%
3764 UGGAUGAGGGAACUCGUCC 82.5% 3818 AUGGCGUCCCAAGGCACCA 77.8%
3765 GGAUGAGGGAACUCGUCCU 82.5% 3819 UGGCGUCCCAGGCAACCAA 77.7%
3766 CAGCUGCACAAAGAGCAAU 82.5% 3820 CGUCCCAAGGCACCAAACG 77.7%
3767 AUGAGGGAACUCGUCCUUU 82.5% 3821 GGCGUCCCAAGGCACCAAA 77.7%
3768 AGCUGCACAAAGAGCAAUG 82.5% 3822 GCGUCCCAAGGCACCAAAC 77.7%
3769 ACAGCUGCACAAAGAGCAA 82.4% 3823 UGUGCACUGAACUUAAACU 77.4%
3770 AACAGCUGCACAAAGAGCA 82.4% 3824 GUGCAACUGAACUUAACUC 77.4%
3771 UAAGCUUCAUCAGAGGGAC 82.2% 3825 AUGUGCACUGAACUUAAAC 77.4%
3772 AGAAAUAAGGCGAAUCUGG 82.2% 3826 CCAAGGCACCAAACGGUCU 77.4%
3773 GAAGAAAUAAGGCGAAUCU 82.1% 3827 CACUGAACUUAAACUCAGU 77.3%
3774 AAGAAAUAAGGCGAAUCUG 82.1% 3828 UGCACUGAACUUAAACUCA 77.3%
3775 UUAAGCUUCAUCAGAGGGA 82.1% 3829 GCAUGAACCUUAAACUCAG 77.3%
3776 GGGAAGAUGAUUGAUGGAA 82.1% 3830 CCCAAGGCACCAAACGGUC 77.2%
3777 ACGAACCCGAUCGUGCCCU 82.1% 3831 UCCCAAGGCACCAAACGGU 77.1%
3778 GUAAGAUGAUUGUUGGAAU 82.1% 3832 AGAUCGAAGAUCUCAUAUU 76.9%
3779 AACGAACCCGAUCGUGCCC 82.1% 3833 GAGAUCGAAGAUCUCAUAU 76.9%
3780 GCCAGAAUGCAACUGAGAU 82.1% 3834 UGAGAUCGAAGAUCUCAUA 76.9%
3781 AGAAGAAAUUAGGCGAAUC 82.1% 3835 GUCCCAAGGCACCAAACGG 76.9%
3782 CGCCAGAAUGCAACUGAGA 82.1% 3836 GUACUGGGCCAUAAGGACC 76.8%
3783 GUGCUCUCUGCUUUUGAUG 81.7% 3837 UGGUGUGGAUGGCAUGCCA 76.6%
3784 GGUGCUCUCUGCUUUUGAU 81.7% 3838 GUGCUUAUGAGAGAAUGUG 76.4%
3785 UGCUCUCUGCUUUUGAUGA 81.7% 3839 GGUACUGGGCCAUAAGGAC 76.3%
3786 GAAGAUGAUUGAUGGAAUU 81.6% 3840 GUGUGGAUGGCAUGCCAUU 76.1%
3787 AUCCGUCGGGAAGAUGAUU 81.5% 3841 UGUGGAUGGCAUGCCAUUC 76.1%
3788 CAUCCGUCGGGAAGAUGAU 81.5% 3842 GGUGUGGAUGGCAUGCCAU 76.1%
3789 UCGGGAAGAUGAUUGAUGG 81.4% 3843 CAUACCAGAGGACAAGAGC 76.1%
3790 CGGGAAGAUGAUUGAUGGA 81.4% 3844 CAACAUACCAGAGGACAAG 76.1%
3791 AAGGCAACGAACCCGAUCG 81.3% 3845 ACAUACCAGAGGACAAGAG 76.1%
3792 AGGCAACGAACCCGAUCGU 81.3% 3846 CUGGUGUGGAUGGCAUGCC 76.0%
3793 GGUCAGUUGCUCACAAAUC 81.2% 3847 AACAUACCAGAGGACAAGA 75.9%
3794 GGGUCAGUUGCUCACAAAU 81.2% 3848 AUACCAGAGGACAAGAGCU 75.9%
3795 GUCGGGAAGAUGAUUGAUG 81.1% 3849 ACAUCCAAAUGUGCACUGA 75.8%
3796 AGGGUCAGUUGCUCACAAA 81.1% 3850 UACAUCCAAAUGUGCACUG 75.8%
3797 UCCGUCGGGAAGAUGAUUG 81.1% 3851 CUACAUCCAAAUGUGCACU 75.8%
3798 AAAGAAACCUCCCAUUUGA 81.0% 3852 GAUCGAAGAUCUCAUAUUU 75.8%
3799 CGUCGGGAAGAUGAUUGAU 81.0% 3853 AUCCAAAUGUGCACUGAAC 75.4%
3800 CAAAGAAACCUCCCAUUUG 81.0% 3854 CCUUUCAAACUACUUCAAA 75.4%
3801 CCGUCGGGAAGAUGAUUGA 81.0% 3855 UCCAAAUGUGCACUGAACU 75.4%
3802 UGAGGGCAGAAAUCAUAAG 80.7% 3856 CAUCCAAAUGUGCACUGAA 75.4%
3803 GGAAUAGACCCUUUCAAAC 80.6% 3857 CAAAUGUGCACUGAACUUA 75.3%
3804 GAAUAGACCCUUUCAAACU 80.6% 3858 AAAUGUGCACUGAACUUAA 75.3%
3805 GUGGGAAUAGACCCUUUCA 80.5% 3859 CUUUCAAACUACUUCAAAA 75.2%
3806 UGGGAAUAGACCCUUUCAA 80.5% 3860 AAUGUGCACUGAACUUAAA 75.1%
3807 GUCAGUUGCUCAUAAAUCU 80.4% 3851 UACUCUUGAACUGAGAAGC 75.1%
3808 GGGAAUAGACCCUUUCAAA 80.3% 3862 GUGACAUCAAAAUCAUGGC 75.1%
3809 GGACAAGAGCUCUUGUUCG 79.1% 3863 UGACAUCAAAAUCAUGGCG 75.0%
3864 ACAUCAAAAUCAUGGCGUC 74.9% 3918 AGGAGUGGAGGAAACACUA 72.3%
3855 GACAUCAAAAUCAUGGCGU 74.9% 3919 GAGUGGAGGAAACACUAAU 72.3%
3866 CCAGGAGUGGAGGAAACAC 74.9% 3920 GGAGUGGAGGAAACACUAA 72.3%
3867 ACCAGGAGUGGAGGAAACA 74.9% 3921 CAGGAGUGGAGGAAACACU 72.2%
3868 AGUGACAUCAAAAUCAUGG 74.9% 3922 UCAAACGGGGGAUCAACGA 72.0%
3869 GACCCUUUCAAACUACUUC 74.8% 3923 CAAACGGGGGAUCAACGAU 71.9%
3870 GUACUCUUGAACUGAGAAG 74.8% 3924 CUUAAACUCAGUGAUUAUG 71.9%
3871 ACCCUUUCAAACUACUUCA 74.8% 3925 AGAAUGCAACUGAGAUUAG 71.9%
3872 AGUACUCUUGAACUGAGAA 74.7% 3926 CAGAAUGCAACUGAGAUUA 71.9%
3873 GAGUGACAUCAAAAUCAUG 74.6% 3927 UUAAACUCAGUGAUUAUGA 71.9%
3874 CCCUUUCAAACUACUUCAA 74.6% 3928 AAACGGGGGAUCAACGAUC 71.7%
3875 CCAAAUGUGCACUGAACUU 74.5% 3929 AACGGGGGAUCAACGAUCG 71.7%
3876 AGUGCUUAUUGAGAAUGGU 74.4% 3930 UCAAAUGAGAACAUGGAUA 71.6%
3877 GGAUGGCAUGCCAUUCUGC 74.3% 3931 GUUAAGCUUCAUCAGAGGG 71.6%
3878 UGGAUGGCAUGCCAUUCUG 74.2% 3932 UUCAAAUGAGAACAUGGAU 71.6%
3879 CUUCAAAUGAGAACAUGGA 74.1% 3933 CUCACAUGAUGAUCUGGCA 71.5%
3880 CAAAUUGCUUCAAAUGAGA 74.1% 3934 GAAGGUGCAAAACCAGAAG 71.5%
3881 GCUUCAAAUGAGAACAUGG 74.1% 3935 CUUCGGAGACAAUGCAGAA 71.5%
3882 AAAUUGCUUCAAAUGAGAA 74.0% 3936 GGAAGGUGCAAAACCAGAA 71.5%
3883 AUUGCUUCAAAUGAGAACA 74.0% 3937 AAGGUGCAAAACCAGAAGA 71.5%
3884 UGAGUGUACAUCAAAACAU 74.0% 3938 ACUCACAUGAUGAUCUGGC 71.5%
3885 UUGCGUUAAAUGAGAACAU 74.0% 3939 AGGUGCAAAACCAGAAGAA 71.5%
3886 AAUUGCUUCAAAUGAGAAC 73.9% 3940 GUGGAUGGCAUGCCAUUCU 71.3%
3887 AACAGAGGGCCUCCGCAGG 73.9% 3941 AUGGCAUGCCAUUCUGCUG 71.3%
3888 UGCUUCAAAUGAGAACAUG 73.9% 3942 UGGCAUGCCAUUCUGCUGC 71.3%
3889 AGGGCCUCCGCAGGCCAAA 73.9% 3943 GAUGGCAUGCCAUUCUGCU 71.3%
3890 CAACAGAGGGCCUCCGCAG 73.9% 3944 GAACUUAAACUCAGUGAUU 71.2%
3891 UAGACCCUUUCAAACUACU 73.9% 3945 ACUUAAACUCAGUGAUUAU 71.2%
3892 AAUCAACAGAGGGCCUCCG 73.8% 3946 UUCGGAGACAAUGCAGAAG 71.2%
3893 AUCAACAGAGGGCCUCCGC 73.8% 3947 AUCCUAAGAAAACUGGAGG 71.2%
3894 UCAACAGAGGGCCUCCGCA 73.8% 3948 CCAGAAUGCAACUGAGAUU 71.2%
3895 AGAACCUUUCAAACUACUU 73.8% 3949 CUCACUGAGUGACAUCAAA 71.2%
3896 GGGGAGUUUUCGAGCUCUC 73.6% 3950 UCGGAGACAAUGCAGAAGA 71.2%
3897 AUAGACCCUUUCAAACUAC 73.6% 3951 AACUUAAACUCAGUGAUUA 71.2%
3898 GAGUUUUCGAGCUCUCAGA 73.6% 3952 GAUCCUAAGAAAACUGGAG 71.1%
3899 ACAGAGGGCCUCCGCAGGC 73.5% 3953 CAGCUGGUCUAACUCACAU 71.0%
3900 GGAGUUUUCGAGCUCUCAG 73.5% 3954 GAAUGCAACUGAGAUUAGG 71.0%
3901 CAGAGGGCCUCCGCAGGCC 73.5% 3955 ACAGCUGGUCUAACUCACA 71.0%
3902 AGAGGGCCUCCGCAGGCCA 73.5% 3956 CAUUCUGCUGCAUUUGAAG 70.9%
3903 AAUAGACCCUUUCAAACUA 73.4% 3957 AUGCCAUUCUGCUGCAUUU 70.8%
3904 GGGAGUUUUCGAGCUCUCA 73.4% 3958 GCCAUUCUGCUGCAUUUGA 70.8%
3905 UCACUGAGUGACAUCAAAA 73.4% 3959 CAUGCCAUUCUGCUGCAUU 70.8%
3906 GAGGGCCUUCGCAGGCCAA 73.4% 3960 CCAUUCUGCUGCAUUUGAA 70.8%
3907 UAAUCAACAGAGGGCCUCC 73.3% 3961 UGCCAUUCUGCUGCAUUUG 70.8%
3908 CUGAGUGACAUCAAAAUCA 73.1% 3962 GCAUGCCAUUCUGCUGCAU 70.8%
3909 ACUGAGUGACAUCAAAAUC 73.1% 3963 GGCAUGCCAUUCUGCUGCA 70.8%
3910 CACUGAGUGACAUCAAAAU 73.0% 3964 UGGAGAGGUGAGAAUGGGC 70.8%
3911 AUCGAAGAUCUCAUAUUUU 72.9% 3965 GGAGAGGUGAGAAUGGGCG 70.8%
3912 UUGUUAAGCUUCAUCAGAG 72.6% 3966 CUGGAGAGGUGAGAAUGGG 70.8%
3913 GAUGAUUGAUGGAAUUGGG 72.6% 3967 CAAAUGAGAACAUGGAUAA 70.6%
3914 UGUUAAGCUUCAUCAGAGG 72.6% 3968 UAAGGACCAGGAGUGGAGG 70.6%
3915 UUCGAAAAAGAGGGAUAUU 72.3% 3969 AUAAGGACCAGGAGUGGAG 70.6%
3916 UCGGAAAAGAGGGAUAUUC 72.3% 3970 AAGGACCAGGAGUGGAGGA 70.5%
3917 ACAAAUUGCUUCAAAUGAG 72.3% 3971 AGGACCAGGAGUGGAGGAA 70.5%
3972 GAAAAAGAGAGAUAUUCCU 70.5% 3987 GUUUUCGAGCUCUCAGACG 70.3%
3973 CGAAGACAAUGCAGAAGAG 70.5% 3988 GCUGCAUUCAAGGAAUUCG 70.3%
3974 CGAAAAAGAGGGAUAUUCC 70.5% 3989 AGAAAGUCGGAACCCAGGA 70.3%
3975 GCCUGUGUGUAUGGACCUG 70.5% 3990 AAAGUCGGAACCCAGGAAA 70.3%
3976 AAAAAGAGGGAUAUUCCUU 70.5% 3991 AACAGCUUGACAAUAGAGA 70.2%
3977 CCUGUGUGUAUGGACCUGC 70.5% 3992 GGAGACAAUGCAGAAGAGU 70.2%
3978 GAGAAAGUCGGAAGCCAGG 70.4% 3993 AGAUUGUUAGCUUCACUCA 70.1%
3979 AGAGAAAGUCGGAACCCAG 70.4% 3994 GAUUGUUAAGCUUCAUCAG 70.1%
3980 AAAUGAGAACAUGGUAAAU 70.4% 3995 UGGAAGAACACCCCAGCGC 70.1%
3981 CUUCGAAAAAGAGGGAUAU 70.4% 3996 CUGCCUGUGUGUAUGGACC 70.0%
3982 GGACCAGGAGUGGAGGAAA 70.4% 3997 CUGGAAGAACACCCCAGCG 70.0%
3983 UUUUCGAGCUCUCAGACGA 70.3% 3998 GAGACAAUGCAGAAGAGUA 70.0%
3984 CUGCAGUCAAAGGAAUCGG 70.3% 3999 AAUGAGAACAUGGAUAAUA 70.0%
3985 AGUUUUCGAGCUCUCAGAC 70.3% 4000 AUGAGAACAUGGAUAAUAU 70.0%
3986 GAAAGUCGGAACCCAGGAA 70.3% 4001 CCUGCCUGUGUGUAUGGAC 70.0%
表2-6在表1-6所列甲型流感片段2(NA)序列中以至少70%存在的保守19-mer序列
Seq
序列 百分比 4035 AGCUCAAGUUGUCACGAUG 85.8%
4036 CAGAGACAACUGGAAAGGC 85.8%
4002 CAGGCUCAUGGCCUGAUGG 87.4% 4037 GAAUGCGUUUGUAUCAAUG 85.7%
4003 GUGGACCUCAAACAGUAUU 87.4% 4038 AAUGCGUUUGUAUCAAUGG 85.7%
4004 UAGCAUGGUCCAGCUCAAG 87.3% 4039 AGUAUUGUUGUGUUUUGUG 85.6%
4005 UGGACCUCAAACAGUAUUG 87.3% 4040 GUAUUGUUGUGUUUUGUGG 85.6%
4006 ACAGGCUCAUUGGCCGAUG 87.2% 4041 UCAAGUUGUCACGAUGGAA 85.5%
4007 GGACCUCAAACAGUAUUGU 87.1% 4042 GUUGUCACGAUGGAAAAGC 85.5%
4008 UGGUCCAGCUCAAGUUGUC 87.0% 4043 CAGUAUUGUUGUGUUUUGU 85.5%
4009 GACCUCAAACAGUUUUGUU 87.0% 4044 AUUGGUCAAAGCCGCAAUG 85.5%
4010 GGUCCAGCUCAAGUUGUCA 87.0% 4045 CAAGUUGGUACGAUGGAAA 85.5%
4011 CAUGGUCCAGCUCAAGUUG 87.0% 4046 ACAGUAUUGUUGUGUUUUG 85.5%
4012 GCAUGGUCCAGCUCAAGUU 87.0% 4047 AACAGUAUUGUUGUGUUUU 85.5%
4013 ACCUCAAACAGUAUUGUUG 87.0% 4048 AAUUGGUCAAAGCCGCAAU 85.5%
4014 AGCAUGGUCCAGCUCAAGU 87.0% 4049 AAACAGUAUUGUUGUGUUU 85.4%
4015 AUGGUCCAGCUCAAGUUGU 86.7% 4050 AGUUGUCACGAUGGAAAAG 85.4%
4016 CCAGUUAUGUGUGCUCAGG 86.4% 4051 CUCAAGUUGUUCACGUGGA 85.4%
4017 CAAACAGUAUUGUUGUGUU 86.4% 4052 AAGUUUGUGAGAUGGAAAA 85.3%
4018 UCAACAUAUUGUGUUGUGU 86.4% 4053 CAACUGCUAGCUUCAUUUA 85.1%
4019 CCUCAAACAGUAUUGUUGU 86.4% 4054 GCAACUGCUAGCUUCAUUU 85.1%
4020 UCCAGUUAUGUGUGCUCAG 86.4% 4055 AAUGCAACUGCUAGCUUCA 84.9%
4021 UUCCAGUUAUGUGUGCUCA 86.3% 4056 UGCAACUGCUAGCUUCAUU 84.9%
4022 UCUGCAGAGACAACUGGAA 86.1% 4057 AUGCAACUGCUAGCUUCAU 84.9%
4023 UGCAGAGACAACUGGAAAG 86.1% 4058 GAACCUUAUGUGUCAUGCG 84.8%
4024 GCAGAGACAACUGGAAAGG 86.1% 4059 AACGUUAUGUGUCAUGCGA 84.7%
4025 CUCAAACAGUAUUGUUGUG 86.1% 4060 AAUCCAAAUCAAAAGAUAA 84.7%
4026 CUGCAGAGACAACUGGAAA 86.1% 4061 AUCCAAAUCAAAAGAUAAU 84.7%
4027 GUCCAGCUGAAGUUGUCAC 86.0% 4062 AAAUGCAACUGCUAGCUUA 84.7%
4028 GAGACAACUGGAAAGGCUC 86.0% 4063 UCCAAAUCAAAAGAUAAUA 84.6%
4029 GCUCAAGUUGUCACGAUGG 85.9% 4064 CAAAUCAAAAGAUAAUAAC 84.5%
4030 CCAGCUCAAGUUGUGACGA 85.9% 4065 AUAGCAUGGUCCAGCUCAA 84.5%
4031 UCCAGCUCAAGUUGUCACG 85.9% 4066 CCAAAUCAAAAGAUAAUAA 84.5%
4032 CAGUAGUAUGGACUGAUGG 85.9% 4067 ACAGUAGUAAUGACUGAUG 84.4%
4033 CAGCUCAAGUUGUCACGAU 85.8% 4068 GUCACGAUGGAAAAGCAUG 84.2%
4034 AGAGACAACUGGAAAGGCU 85.8%
4069 UUGGUCAAAGCCGCAAUGU 84.2% 4123 CUCAUGGCCUGAUGGGGCG 82.7%
4070 GUGGAGUUGAUAAGGGGAA 84.2% 4124 AAAUUGGUCAAAGCCGCAA 82.7%
4071 UCACGAUGGAAAAGCAUGG 84.2% 4125 CAGGAUUUGCACCUUUUUC 82.7%
4072 UGGAGUUGAUAAGGGGAAG 84.1% 4126 ACAGGAUUUCACCUUUUUU 82.7%
4073 UGUCACGAUGGAAAAGCAU 84.1% 4127 AACAGGCUCAUGGCCUGAU 82.7%
4074 GAGAACCUUAUUGUCUCAG 84.0% 4128 GGAAAAGCAUGGCUGCAUG 82.6%
4075 AGAGAACCUUAUGUGUCAU 84.0% 4129 GAAAAGCAUGGCUGCAUGU 82.6%
4076 UUGUCACGAUGGAAAAGCA 83.9% 4130 AAAAGCAUGGCUGCAUGUU 82.6%
4077 ACCUUAUGUGUCAUGCGAU 83.8% 4131 UGGAAAAGCAUGGCUGCAU 82.5%
4078 CCUUAUGUGUCAUGCGAUC 83.8% 4132 AUGGAAAAGCAUGGCUGCA 82.5%
4079 AGGCUCAUGGCCUGAUGGG 83.8% 4133 GAUGGAAAAGCAUGGCUGC 82.4%
4080 UUUUAUGUGGAGUUGAUAA 83.8% 4134 GUGGAUGGGAAGAACGAUC 82.4%
4081 GGCUCAUGGCCUGAUGGGG 83.8% 4135 CAGAAAUUGGUCAAAGCCG 82.3%
4082 UUUAUGUGGAGGUGAUAAG 83.8% 4136 UACAGGAUUUGCACCUUUU 82.2%
4083 GGUGCUUUUAUGUGGAGUU 83.7% 4137 CGUGUGGAUGGGAAGAACG 82.0%
4084 ACGUGUGGAUGGGAAGAAC 83.6% 4138 CAUAACAGAGAUAGUGUAU 81.8%
4085 AACAUUAACAGGAUAGUGU 83.6% 4139 UUAUGUGUCAUGCGAUCCU 81.8%
4086 ACAUAACAGAGAUAGUGUA 83.6% 4140 CUUAUGUGUCAUGCGAUCC 81.8%
4087 AUGACGUGUGGAUGGGAAG 83.6% 4141 GGAUUUGCACCUUUUUCUA 81.5%
4088 UGAUUGUUGUGUUUGUGGC 83.5% 4142 CACGAUGGAAAAGCAUGGC 81.5%
4089 UGACGUGUGGAUGGGAAGA 83.5% 4143 ACGAUGGAAAAGCAUGGCU 81.5%
4090 GACGUGUGGAUGGGAAGAA 83.5% 4144 UGGAUGGGAAGAACGAUCA 81.4%
4091 AUUGUUGUGUUUUGUGGCA 83.5% 4145 GAUUUGCACCUUUUUCUAA 81.4%
4092 UUGUUGUGUUUUGUGGCAC 83.5% 4146 AUUUGCACCUUUUUCUAAG 81.4%
4093 UACAGAAAUUGGUCAAAGC 83.4% 4147 UUGCACCUUUUUCUAAGGA 81 4%
4094 AAAAUGCAACUGCUAGCUU 83.4% 4148 CGAUGGAAAAGCAUGGCUG 81.4%
4095 ACAGAAAUUGGUCAAAGCC 83.4% 4149 UUUGCACCUUAUUCUAAGG 81.4%
4096 AUGUGGAGUUGAUAAGGGG 83.3% 4150 UAUGUGUCAUGCGAUCCUG 81.3%
4097 GCUUUUAUGUGGAGUUGAU 83.3% 4151 UGAAUCCAAAUCAAAAGAU 81.3%
4098 UAUGUGGAGUUGAUAAGGG 83.3% 4152 AUGAAUCCAAAUCAAAAGA 81.3%
4099 UGUGGAGUUGAUAAGGGGA 83.3% 4153 GAAUCCAAAUCAAAAGAUA 81.3%
4100 CUUUUAUGUGGAGUUGAUA 83.3% 4154 GGAUGGGAAGAACGAUCAG 80.5%
4101 GUGCUUUUAUGUGGAGUUG 83.3% 4155 UGAAAGGCUGGGCCUUUGA 80.1%
4102 UGCUUUUAUGUGGAGUUGA 83.3% 4156 GAGUGAAAGGCUGGGCCUU 80.0%
4103 UGUGGAUAUGGAAAACGAU 83.3% 4157 GGAGUGAAAGGCUGGGCCU 80.0%
4104 AGAACCUUAUGUGUCAUGC 83.2% 4158 GUGAAAGGCUGGGCCUUUG 80.0%
4105 UUAUGUGGAGUUGAUAAGG 83.1% 4159 UGCACCUUUUUCUAAGGAC 79.8%
4106 AUUACAGGAUUUGCACCUU 83.1% 4160 GCACCUUUUUCUAAGGACA 79.8%
4107 AUACAGAAAUUGGUCAAAG 83.1% 4161 CACCUUUUUCUAAGGACAA 79.8%
4108 UUACCAGGAUUGCACCUUU 83.1% 4162 CAUGGCUGCAUGUUUGUGU 79.8%
4109 AAAGCAUGGCUGCAUGUUU 83.1% 4163 AGUGAAAGGCUGGGCCUUU 79.8%
4110 AAGCAUGGCUGCAUGUUUG 83.1% 4164 GCAUGGCUGCUAUGUUUUG 79.8%
4111 GUGUGGAUGGGAAGAACGA 83.1% 4165 ACCUUUUUCUAAGGACAAU 79.8%
4112 AGCAUGGCUGCAUGUUUGU 83.1% 4166 CCUUUUUCUAAGGACAAUU 79.7%
4113 AUGGAACAGGCUCAUGGCC 83.0% 4167 GAUGGGAAGAACGAUCAGC 79.7%
4114 UAUGGUAACAGGCCAUGGC 83.0% 4168 CUUUUUCUAAGGACAAUUC 79.7%
4115 GCUCAUGGCCUGAUGGGGC 82.9% 4169 UAACUACUGUAACAUUGCA 79.3%
4116 GAAUACAGAAAUUGGUCAA 82.9% 4170 CUACUGUAACAUUGCAUUU 79.3%
4117 AAUACAGAAAUUGGUCAAA 82.9% 4171 ACUACUGUAACAUUGCAUU 79.3%
4118 UGGAACAGGCUCAUGGCCU 82.9% 4172 AACUACUGUAACAUUGCAU 79.0%
4119 GAAAUUGGUCAAAGCCGCA 82.8% 4173 GAAAUGACGUGUGGAUGGG 78.6%
4120 GGAACAGGCUCAUGGCCUG 82.8% 4174 GGAAAUGACGUGUGGAUGG 78.5%
4121 AGAAAUUGGUCAAAGCCGC 82.8% 4175 UGGAAAUGACGUGUGGAUG 78.4%
4122 GAACAGGCUCAUGGCCUGA 82.8% 4176 AUGGAAAUGACGUGUGGAU 78.4%
4177 GAUGGAAAUGACGUGUGGA 78.3% 4231 UUUCCAGUUAUGUGUGCUC 75.8%
4178 AAAUGACGUGUGGAUGGGA 78.2% 4232 GUCAGGAAGUGCUCAGCAU 75.8%
4179 AUGACGUGUGGAUAGGGAA 78.2% 4233 GGUGUCAGAUGUGUCUGCA 75.6%
4180 GUACAGUAGUAAUGACUGA 78.0% 4234 CUGGUGUCAGAUGUGUCUG 75.6%
4181 UGUACAGUAGUAAUGACUG 78.0% 4235 GUGUCAGAUGUGUCUGCAG 75.6%
4182 AGGAUUUGCACCUUUUUCU 78.0% 4236 UGGUGUCAGAUGUGUCUGC 75.5%
4183 CUUGUACAGUAGUAAUGAC 78.0% 4237 GUUUCCAGUUAUGUGUGCU 75.5%
4184 ACUUGUUACAUAGUAAUGA 77.9% 4238 GCAUUGUUUCCAGUUAUGU 75.5%
4185 UACAUUAGUAAUGACUGAU 77.9% 4239 AGCAUUGUUUCCAGUUAUG 75.5%
4186 UUGUACAGUAGUAAUGACU 77.9% 4240 GUACAUAUGGAACAGGCUC 75.5%
4187 AACUGCUAGCUUCAUUUAC 77.9% 4241 UGUUUCCAGUUAUGUGUGC 75.4%
4188 GUUAUUCUGGUAUUUUCUC 77.6% 4242 GUCAGAUGUGUCUGCAGAG 75.4%
4189 GGUUAUUCUGGUAUUUUCU 77.6% 4243 GGUACAUAUGGAACAGGCU 75.4%
4190 AUACUAAAAUACUAUUCAU 77.2% 4244 UGUCAGAUGUGUCUGCAGA 75.4%
4191 GAUACUAAAAUACUAUUCA 77.1% 4245 CCUGGUGUCAGAUGUGUCU 75.4%
4192 UACUAAAAUACUAUUCAUU 77.1% 4246 CAUAUGGAACAGGCUCAUG 75.3%
4193 AUGAAACCUUCAAAGUCAU 77.0% 4247 UACAUAUGGAACAGGCUCA 75.3%
4194 UCAGAUUGUGCUGCAGAGA 76.9% 4248 CAGGUACAUAUGGAACAGG 75.3%
4195 CUGAUACUAAAAUACUAUU 76.9% 4249 ACUGGAAAGGCUCCAAUAG 75.3%
4196 UCAAUCUCAUGCCUAUAUA 76.9% 4250 AUAUGGAACAGGCUCAUGG 75.3%
4197 CAGGAAGUGCUCAGCAUGU 76.9% 4251 AGGUACAUAUGGAACAGGC 75.3%
4198 AUCAAUCUCAUGCCUAUAU 76.9% 4252 AUAGCAUUGUUUCCAGUUA 75.3%
4199 CAAUCUCAUGCCUAUAUAA 76.9% 4253 UUGUUUCCAGUUAUGUGUG 75.3%
4200 UAUGAAACCUUCAAAGUCA 76.9% 4254 UAGCAUUGUUUCCAGUUAU 75.3%
4201 CAGAUGUGUCUGCAGAGAC 76.8% 4255 UCAGGUACAUAUGGAACAG 75.2%
4202 GCUGAUACUAAAAUACUAU 76.8% 4256 AACUGGAAAGGCUCCAAUA 75.2%
4203 ACUAAAAUACUAUUCAUUG 76.7% 4257 AUUGUUUCCAGUUAUGUGU 75.2%
4204 UGAUACUAAAAUACUAUUC 76.7% 4258 ACAUAUGGAACAGGCUCAU 75.2%
4205 AGAUGUGUCUGCAGAGACA 76.7% 4259 CAUUGUUUCCAGUUAUGUG 75.1%
4206 CUAAAAUACUAUUCAUUGA 76.7% 4260 CUGGAAAGGCUCCAAUAGG 75.1%
4207 GAUGUGUCUGCAGAGACAA 76.7% 4261 GACAACUGGAAAGGCUCCA 75.1%
4208 UCAGGAAGUGCUCAGCAUG 76.6% 4262 UAGAAAGAAACAUAACAGA 75.1%
4209 ACUGUAACAUUGCAUUUCA 76.3% 4263 ACAACUGGAAAGGCUCCAA 75.1%
4210 UAACAUUGCACUUCAAGCA 76.3% 4264 CAACUGGAAAGGCUCCAAU 75.1%
4211 AGCUGAUACUAAAAUACUA 76.3% 4265 AGAAAGAAACAUAACAGAG 74.9%
4212 GUAACAUU3CAUUUCAAGC 76.2% 4266 AAAGAAACAUAACAGAGAU 74.9%
4213 GGAAAGGCUCCAAUAGGCC 76.2% 4267 GAAAGAAACAUAACAGAGA 74.9%
4214 UGGAAAGGCUCCAAUAGGC 76.2% 4268 AGACAACUGGAAAGGCUCC 74.9%
4215 ACACACCCAGAAAAAACGA 76.1% 4269 AAAGGCUCCAAUAGGCCCA 74.6%
4216 UGUAACAUUGCAUUUCAAG 76.1% 4270 GAAACAUAACAGAGAUAGU 74.6%
4217 CUGUAACAUUGCAUUUCAA 76.1% 4271 AGAAACAUAACAGAGAUAG 74.6%
4218 GACACACCCAAGAAAAACG 76.1% 4272 AAGGCUCCAAUAGGCCCAU 74.6%
4219 UGUCAGGAAGUGCUCAGCA 76.0% 4273 AAGAAACAUAACAGAGAUA 74.6%
4220 ACACCCAGAAAAAACGACA 76.0% 4274 ACCUCAGGUACAUAUGGAA 74.4%
4221 UGUCUGCAGAGACAACUGG 75.9% 4275 CCUCAGGUACAUAUGGAAC 74.3%
4222 UGUGUCUGCAGAGACAACU 75.9% 4276 CUCAGGUACAUAUGGAACA 74.3%
4223 CACCCAGAAAAAACGACAG 75.9% 4277 UCUGUGAACAUUGCAUUUC 74.1%
4224 CAUGGCCUGAAUGGGCGGA 75.9% 4278 UACAUGAUAGGACCCCUUA 73.8%
4225 GUCUGCAGAGACAACUGGA 75.9% 4279 CAUAGCAUGGUCCAGCUCA 73.5%
4226 GUGUCUGCAGAGACAACUG 75.9% 4280 AUGGGAGAACGAUUCAGCG 73.5%
4227 UCAUGGCCUGAUGGGGCGG 75.9% 4281 UGCAUAGCAUGGUCCAGCU 73.5%
4228 GAAAGGCUCCAAUAGGCCC 75.9% 4282 GCAUAGCAUGGUCCAGCUC 73.5%
4229 CACACCCAGAAAAAACGAC 75.9% 4283 UUGUCAGGAAGUGCUCAGC 73.3%
4230 AUGUGUCUGCAGAGACAAC 75.8% 4284 UGGGAAGAACGAUCAGCGA 73.3%
4285 AUUUGUCAGAAGUGCUCAG 73.3% 4339 UAUGUGUGCUCAGGACUUG 71.9%
4286 CUUGUUGGAGACACACCCA 72.9% 4340 UGUGCUCAGGACUUGUUGG 71.9%
4287 GUGCUAGGCAUGGUCCAGC 72.9% 4341 GAUAUCCUGGUGUCGAAUG 71.9%
4288 GUGUGCAUAGCAUGGUCCA 72.9% 4342 AAUCGGUGCUUUUAUGUGG 71.8%
4289 UUGUUGGAGACACACCCAG 72.9% 4343 UGUGUGCUCAGGACUUGUU 71.8%
4290 UGUGCAUAGCAUGGUCCAG 72.9% 4344 CUCGAUAUCCUGGUGUCAG 71.8%
4291 UGUUGGAGACACACCCAGA 72.9% 4345 AGUUGUGUGUGCUCAGGAC 71.8%
4292 GUUGGAGACACACCCAGAA 72.9% 4346 GUGUGCUCAGGACUUGUUG 71.8%
4293 AAGUGUGCAUAGCAUGGUC 72.8% 4347 AUCGGUGCUUUUAUGUGGA 71.8%
4294 AGUGUGCAUAGCAUGGUCC 72.8% 4348 GCAAGUGUGCAUAGCAUGG 71.8%
4295 UUGGAGACACACCCAGAAA 72.8% 4349 UUUUGUGGCACCUCAGGUA 71.7%
4296 CAAGUGUGCAUAGCAAGGU 72.7% 4350 CCUCGAUAUCCUGGUGUCA 71.7%
4297 GGAGACAACCCAGAAAAAA 72.6% 4351 AUCAAUCGGUGCUUUUAUG 71.7%
4298 UGGAGACACACCCAGAAAA 72.6% 4352 UCGAUAUCCUGGUGGUGAG 71.7%
4299 AAACAUAACAGAGAUAGUG 72.4% 4353 GUUUUGUGGCACCUCAGGU 71.7%
4300 AGAAUACAGAAAUUGGUCA 72.4% 4354 UUUGUGGCACCUCAGGUAC 71.7%
4301 UCCGGUUAUUCUGGUAUUU 72.4% 4355 CAAUCGGUGCUUUUAUGUG 71.7%
4302 AUUAUAGCAUUGUUUCCAG 72.4% 4356 UUGUGGCACCUCAGGUACA 71.6%
4303 UAUAGCAUUGUUUCCAGUU 72.4% 4357 CAGUUAGUGUGCUCAGGAA 71.5%
4304 GGGAAGAACGAUCAGCGAG 72.4% 4358 ACCCAGAAAAACGACCAGC 71.5%
4305 CCGGUUAUUCUGGUAUUUU 72.4% 4359 CCCAGAAAAAACGAGAGCU 71.5%
4306 UUAUAGCAUUGUUUCCAGU 72.4% 4360 GCAUCAAUCGGUGCUUUUA 71.4%
4307 CAGUACAUGAUAGGACCCC 72.3% 4361 UUGUGUUUUGUGGCACCUC 71.4%
4308 UGCGUUUGUAUCAAUGGAA 72.3% 4362 CAUCAAUCGGUUCUUUUAU 71.4%
4309 GAUUAUGCAUUUUGUUCCA 72.3% 4363 UCCUCGAUAUCCUGGUGUC 71.4%
4310 GGCUGCAUGUUUGUGUAAC 72.2% 4364 UGCAUCAAUCGGUGCUUUU 71.4%
4311 CACCUCAGGUACAUAUGGA 72.2% 4365 AUCCUCGAUAUCCUGGUGU 71.4%
4312 GUACAUGAUAGGACCCCUU 72.2% 4366 UAUCCUCGAUAUCCUGGUG 71.4%
4313 UGGGCACCUCAGGUUACAU 72.2% 4367 GCUCAGGACUUGUUGGAGA 71.3%
4314 CGGUUAUUCUGGUAUUUUC 72.2% 4368 UGGUCAGGACUUGUUGGAG 71.3%
4315 GAGACACACCCAGAAAAAA 72.2% 4369 GUUGUGUUUUGUGGCACCU 71.3%
4316 GGCACCUCAGGUACAUAUG 72.2% 4370 UGUUGUGUUUUGUGGCACC 71.3%
4317 GUGGCACCUCAGGUACAUA 72.2% 4371 AUUGGCUCUGUUUCUCUCA 71.2%
4318 GCGUUUGUUAUCAAUGAAC 72.2% 4372 UGUGUUUUGUGGCACCUCA 71.2%
4319 UUUGUAUCAAUGGAACUUG 72.2% 4373 GGACUUGUUGGAGACACAC 71.2%
4320 ACAGUACAUGAUAGGACCC 72.2% 4374 GACUUGUUGGAGACACACC 71.2%
4321 GCACUCCAGGUUCAUAUGG 72.2% 4375 CAGGACUUGUUGGAGACAC 71.2%
4322 UGUGGCACCUCAGGUACAU 72.2% 4376 CUAGGACUUGUUGGGAGAC 71.2%
4323 UGGCUGCAUGUUUGUGUAA 72.2% 4377 AGGACUUGUUGGAGACACA 71.2%
4324 AGUACAUGAUAGGACCCCU 72.2% 4378 GUGUUUGUGGCACCUUCAG 71.2%
4325 GUUUUGUAUCAAUGAACUU 72.1% 4379 UCAGGACUUGUUGGAGACA 71.2%
4326 AUGCGUUUGUAUCAAUGGA 72.1% 4380 UGUUUUGUGGCACCUCAGG 71.2%
4327 ACACAGUACAUGAUAGGAC 72.0% 4381 ACUUGUUGGAGACACACCC 71.1%
4328 UUGUAUCAAUGGAACUUGU 72.0% 4382 UCAAUUGGAACUUUACAGU 71.0%
4329 CGUUUGUAUCAAUGGAACU 72.0% 4383 AUCAAUGGAACUUGUACAG 71.0%
4330 GUCCGGUUAUUCUGGUAUU 72.0% 4384 CUGCAUCAAUCGGUGCUUU 71.0%
4331 UCAAUCGGUGCUUUUAUGU 72.0% 4385 GUGCUCAGGACUUGAUGGA 70.9%
4332 CACGUACAUGACUAGGACC 72.0% 4386 GUUAUCAAUUUGCCCUUGG 70.8%
4333 AGACACACCCAGAAAAAAC 71.9% 4387 AAGCUGCAUCAAUCGGUGC 70.8%
4334 AUGUGUGCUCAGGACUUGU 71.9% 4388 GCUGCAUCAAUCGGUGCUU 70.8%
4335 GUUAUGUGUGCUCAGGACU 71.9% 4389 UGUUAUCAAUUUGCCCUUG 70.8%
4336 CGAUAUCCUGGUGUCAGAU 71.9% 4390 AAAAGCUGCAUCAAUCGGU 70.8%
4337 UUAUGUGUGCUCAGGACUU 7L9% 4391 AAAGCUGCAUCAAUCGGUG 70.8%
4338 AUAUCCUGGUGUCAGAUGU 71.9% 4392 AGCUGCAUCAAUCGGUGCU 70.8%
4393 UUGGCUCUGUUUCUCUCAC 70.7% 4410 GCAAAAGCUGCAUCAAUCG 70.4%
4394 GGUCCGGUUAUUCUGGUAU 70.7% 4411 AAGAGAACCUUAUGUGUCA 70.4%
4395 AGGUCCGGUUAUUCUGGUA 70.7% 4412 AUGACACAGUACAUGAUAG 70.3%
4396 CAAAAGCUGCAUCAAUCGG 70.6% 4413 AAUGACACAGUACAUGAUA 70.3%
4397 AUGGCUGCAUGUUUGUGUA 70.6% 4414 UUUGAAUGAUGAAAUGACG 70.3%
4398 UAUCAAUGGAACUUGACDA 70.6% 4415 UUAAAGAAAGAAACAUAAC 70.3%
4399 GUAUCAAUGGAACUUGUAC 70.6% 4416 AGGGAACAACACUAAACAA 70.3%
4400 UGUAUCAAUGGAACUUGUA 70.6% 4417 UAUCCUGGUGUCAGAUGUG 70.2%
4401 AAUAGAAAGAAACAUAACA 70.6% 4418 AUCCUGGUGUCAGAUGUGU 70.2%
4402 UCAUGGAGUGAAAGGCUGG 70.5% 4419 UCGGUGCUUUUAUGUGGAG 70.2%
4403 CAUGGAGUGAAAGGCUGGG 70.5% 4420 CAGGGAACAACACUAAACA 70.2%
4404 CAAGAGAACCUUAUGUGUC 70.5% 4421 GACACAGUACAUGAUAGGA 70.2%
4405 AUGGAGUGAAAGGCUGGGC 70.5% 4422 UUGAUGAUGGAAAUGACGU 70.2%
4406 AUAGAAAGAAACAUAACAG 70.5% 4423 GGGAACAACACUAAACAAC 70.1%
4407 ACAAGAGAACCUUAUGUGU 70.5% 4424 GGCAAAAGCUGCAUCAAUC 70.1%
4408 UGGAGUGAAAGGCUGGGCC 70.4% 4425 CAAAUGACACAGUACAUGA 70.0%
4409 UCAAAUGACACAGUACAUG 70.4% 4426 UCCUGUGUCUAGAUGUGUC 70.0%
表2-7在表1-7所列甲型流感片段2(M1&M2)序列中以至少70%存在的保守19-mer序列
Seq
ID 序列 百分比 4459 GCUUUGUCCAAAAUGCCCU 94.3%
4460 CGCUUUGUCCAAAAUGCCC 94.3%
4427 UUCACGCUCACCGUGCCCA 99.2% 4461 UCAGUUAUUCUGCUGGUGC 94.2%
4428 CAGGCCCCCUCAAAGCCGA 99.0% 4462 AUUCUGCUGGUGCACUUGC 94.1%
4429 UCAGGCCCCCUCAAAGCCG 99.0% 4463 CUCAUGGAAUGGCUAAAGA 94.1%
4430 UCACGCUCACCGUGCCCAG 98.9% 4464 UCAUGGAAUGGCUAAAGAC 94.1%
4431 CACGCUCACCGUGCCCAGU 98.8% 4465 UAUUCUGCUGGUGCACUUG 94.1%
4432 CGCUCACCGUGCCCAGUGA 98.8% 4466 AUGGAAUGGCUAAAGACAA 94.0%
4433 ACGCUCACCGUGCCCAGUG 98.8% 4467 CUCAGUUAUUCUGCUGGUG 94.0%
4434 UCACCGUGCCCAGUGAGCG 98.7% 4468 GUUAUUCUGCUGGUGCACU 94.0%
4435 CUCACCGUGCCCAGUGAGC 98.7% 4469 UGGCCAGCACUACAGCUAA 94.0%
4436 GCUCACCGUGCCCAGUGAG 98.5% 4470 UUAUUCUGCUGGUGCACUU 94.0%
4437 AUCUUGAGGCUCUCAUGGA 96.4% 4471 CAUGGAAUGGCUAAAGACA 94.0%
4438 GAUCUUGAGGCUCUCAUGG 96.4% 4472 UGGAAUGGCUAAAGACAAG 93.9%
4439 UGUCACCUCUGACUAAGGG 96.3% 4473 UCUCAUGGAAUGGCUAAAG 93.9%
4440 CUGUCACCUCUGACUAAGG 96.3% 4474 AGUUAUUCUGCUGGUGCAC 93.9%
4441 GACUGCAGCGUAGACGCUU 95.6% 4475 GGAAUGGCUAAAGACAAGA 93.7%
4442 GGACUGCAGCGUAGACGCU 95.6% 4476 AAUGGCUAAAGACAAGACC 93.7%
4443 UGCAGCGUAGACGCUUUGU 95.5% 4477 GAAUGGCUAAAGACAAGAC 93.7%
4444 ACUGCAGCGUAGACGCUUU 95.5% 4478 UCCAUGGGGCCAAAGAAAU 93.4%
4445 CUGCAGCGUAGACGCUUUG 95.5% 4479 GCGUAGACGCUUUGUCCAA 93.4%
4446 GCUAUGGAGCAAAUGGCUG 95.4% 4480 CAGUUAUUCUGCUGGUGCA 93.4%
4447 UGGCUAAAGACAAGACCAA 95.4% 4481 UUCCAUGGGGCCAAAGAAA 93.4%
4448 CAGCGUAGACGCUUUGUCC 95.4% 4482 CACCUCUGACUAAGGGGAU 93.2%
4449 CUAUGGAGCAAAUGGCUGG 95.4% 4483 GUCACCUCUGACUAAGGGG 93.2%
4450 AGCGUAGACGCUUUGUCCA 95.4% 4484 UCACCUCUGACUUAAGGGA 93.2%
4451 GCAGCGUAGACGCUUUGUC 95.4% 4485 CUGGUGCACUUGCCAGUUG 93.0%
4452 GGCUAAAGACAAGACCAAU 95.4% 4486 GAGGCUCUCAUGGAAUGGC 93.0%
4453 CGUAGACGCUUUGUCCAAA 94.9% 4487 GCUCUCAUUGGAAGGCUAA 93.0%
4454 GUAGACGGUUUGUCCAAAA 94.9% 4488 CUCUCAUGGAAUGGCUAAA 93.0%
4455 AGACGCUUUGUCCAAAAUG 94.8% 4489 AUGGGGCCAAAGAAAUAGC 93.0%
4456 UAGACGCUUUGUCCAAAAU 94.8% 4490 AGGCUCUCAUGGAAUGGCU 93.0%
4457 GACGCUUUGUCCAAAAUGC 94.7% 4491 GGCUCUCAUGGAAUGGCUA 92.9%
4458 ACGCUUUGUCCAAAAUGCC 94.3%
4492 UUGAGGCUCUCAUGGAAUG 92.9% 4546 GAUCUUCUUGAAAAUUUGC 88.6%
4493 UGAGGCUCUCAUGGAAUGG 92.9% 4547 UGAUCUUCUUGAAAAUUUG 88.6%
4494 CUUGAGGCUCUCAUGGAAU 92.9% 4548 CAGAAACGAAUGGGGGUGC 88.5%
4495 CAUGGGCCAAAGGAAAUAG 92.9% 4549 ACAAUGGGGGGUGCAGAUG 88.5%
4496 GCUGUGCACUUGCCAGGUU 92.9% 4550 AGAAACGAAUGGGGGUGCA 88.5%
4497 CUUCUACGGAAGGAGUACC 92.8% 4551 AAACGAAUUGGGGUGCAGA 88.4%
4498 UCUUGAGGCUCUCAUGGAA 92.7% 4552 AACGAAUGGGGGUGCAGAU 88.4%
4499 CUGCUGGUGCACUUGCCAG 92.7% 4553 UGGAGCAAAUGGCUGGAUC 88.4%
4500 UGCUGGUGCACUUGCCAGU 92.7% 4554 AUGGAGCAAAUGGCUGGAU 88.4%
4501 UCUGCUGGUGCACUUGCCA 92.7% 4555 GAAACGAAAUUGGGGGCAG 88.2%
4502 CCAUGGGGCCAAAGAAAUA 92.6% 4556 AUCGUCUUUUUUUCAAAUG 88.1%
4503 AGUAUAUGAGGGAAGAAUA 92.6% 4557 CCUAUCAGAAACGAAUGGG 88.1%
4504 CCUUCUACGGAAGGAGUAC 92.5% 4558 UAUGGAGCAAAUGGCUGGA 88.1%
4505 GUCUAUGAGGGAAGAAUAU 92.4% 4559 GAUCGUCUUUUUUUCAAAU 88.0%
4506 CUAUGAGGGAAGAAUAUCG 92.4% 4560 UGAUCGUCUUUUUUUCAAA 88.0%
4507 UCUAUGAGGGAAGAAUAUC 92.4% 4561 UUGAUCGUCUUUUUUUCAA 88.0%
4508 GUCAUUUUGUCAGCAUAGA 92.2% 4562 UCGUCUUUUUUUCAAAUGC 87.8%
4509 GAGUCUAUGAGGGAAGAAU 92.2% 4563 GAUUCUUGAUCGUCCUUUU 87.5%
4510 UCAUUUUGUCAGCAUAGAG 92.1% 4564 AUUCUUGAUCGUCUUUUUU 87.4%
4511 AGACUUGAAGAUGUCUUUG 91.9% 4565 CUUGAUCGUCUUUUUUUCA 87.2%
4512 GACUUGAAGAUGUCUUUGC 91.9% 4566 UUGGGACUCAUCUUAGCUC 87.2%
4513 AGAGACUUGAAGAUGUCUU 91.9% 4567 AUUGGGAUCUUGCACUUGA 87.1%
4514 GAGACUUGAAGAUGUCUUU 91.9% 4568 UCUUGAUCGUCUUUUUUUC 87.1%
4515 CAGAGACUUGAAGAUGUCU 91.9% 4569 UUCUUGAUCGUCUUUUUUU 87.1%
4516 GUGCAGAUGCAACGAUUCA 91.7% 4570 GAUGAUCUUCUUGAAAAUU 87.0%
4517 UUCUGCUGGUGCACUUGCC 91.7% 4571 UAUCGAAAGGAACAGCAGA 87.0%
4518 UGCAGAUGCAACGAUUCAA 91.6% 4572 AGAUGAUCUUCUUGAAAAU 86.9%
4519 UAUGAGGGAAGAAUAUCGA 91.5% 4573 UUGGGAUCUUGCACUUGAU 86.9%
4520 AUGGGGGUGCAGAUGCAAC 91.3% 4574 UGGGAUCUUGCACUUGAUA 86.9%
4521 UGGGGGUGCAGAUGCAACG 91.3% 4575 UCAUUGGGAUCUUGCACUU 86.6%
4522 ACCUCUGACUAAGGGGAUU 91.3% 4576 CAUUGGGAUCUUGCACUUG 86.5%
4523 UGGAUUCUUGAUCGUCUUU 91.1% 4577 CAGAUCUUGAGGCUCUCAU 86.4%
4524 GGAUUCUUGAUCGUCUUUU 91.1% 4578 CACAGAUCUUGAGGCUCUC 86.4%
4525 GGGGUGCAGAUGCAACGAU 90.8% 4579 CCUGAGUCUAUGAGGGAAG 86.4%
4526 GGGUGCAGAUGCAACGAUU 90.8% 4580 ACAGAUCUUGAGGCUCUCA 86.4%
4527 GUGGAUUCUUGAUCGUCUU 90.8% 4581 AUCAUUGGGAUCUUGCACU 86.4%
4528 GGUGCAGAUGCAACGAUUC 90.8% 4582 CUAGUCUUAUGAGGGAAGA 86.4%
4529 GGGGGUGCAGAUGCAACGA 90.8% 4583 AGAUCUUGAGGCUCUCAUG 86.4%
4530 CUCUGACUAAGGGGAUUUU 90.7% 4584 ACACAGUCUUUGAGGCUCU 86.4%
4531 CCUCUGACUAAGGGGAUUU 90.7% 4585 ACAGCUAAGGCUAUGGAGC 86.3%
4532 UGUGGAUUCUUGAUCGUCU 90.7% 4586 CAGCUAAGGCUAUGGAGCA 86.3%
4533 UCUUCUUGAAAAUUUGCAG 90.5% 4587 AACACAGAUCUUGAGGCUC 86.3%
4534 AUGGCUAAAGACAAGACCA 90.5% 4588 GGCUAUGGAGCUAAUGGCU 86.2%
4535 AUCUUCUUGAAAAUUUGCA 90.5% 4589 ACUACAGCUAAGGCUAUGG 86.2%
4536 GAAUGGGGGUGCAGAUGCA 90.4% 4590 AAGGCUAUGGAGCAAAUGG 86.2%
4537 CGAAUGGGGGUGCAGAUGC 90.2% 4591 AGGCUAUGGAGCAAAUGGC 86.2%
4538 AAUGGGGGUGCAGAUGCAA 90.2% 4592 CUACAGCUAAGGCUAUGGA 86.2%
4539 UUGAAGAUGUCUUUGCUGG 89.9% 4593 CCAGCACUACAGCUAAGGC 86.1%
4540 CUUGAAGAUGUCUUUGCUG 89.9% 4594 AGCCACUAAGCUAAGGCUA 86.1%
4541 ACUUGAAGAUGUCUUUGCU 89.7% 4595 CACUAGAGCGAAGGCUAUG 86.1%
4542 GAUCCAAAUAACAUGGACA 89.2% 4596 GCCAGCACUACAGCUAAGG 86.1%
4543 AUGAUCUUCUUGAAAAUUU 89.0% 4597 GCACUACAGCUAAGGCUAU 86.1%
4544 AGAUUGCUGACUCCCAGCA 88.8% 4598 CUAAGGCUAUGGAGCAAAU 86.0%
4545 CAGAUUGCUGACUCCCAGC 88.8% 4599 AAUAUCGAAAGGAACAGCA 86.0%
4600 UAAGGCUAUGGAGCAAAUG 86.0% 4654 UCAGAAACGAAUGGGGGUG 84.1%
4601 GCUAAGGCUAUGGAGCAAA 86.0% 4655 CUAUCAGAAACGAAUGGGG 84.1%
4602 GUGAACAGAUUGCUGACUC 86.0% 4656 CCAAAAUGCCCUCAAUGGG 84.1%
4603 UACAGCUAAGGCUAUGGAG 86.0% 4657 UAUCAGAAACGAAAGGGGG 84.1%
4604 UGUGAACAGAUUGCUGACU 86.0% 4658 ACGGAAGGAGUACCUGAGU 84.0%
4605 CAGCACUACAGCUAAGGCU 86.0% 4659 UUUGGCCUGGUAUGUGCAA 84.0%
4606 GAAUAUCGAAAGGAACAGC 86.0% 4660 UACGGAAGGAGUACCUGAG 83.9%
4607 AAGAUUGCUGACUUCCCAG 85.9% 4661 CGGAAGGAGUACCUGAGUC 83.9%
4608 UGAACAGAUUGCUGACUCC 85.9% 4662 UCUACGGAAGGAGUACCUG 83.7%
4609 GAACAGAUUGCUGACUCCC 85.9% 4663 CACUUGCCAGUUGCAUGGG 83.7%
4610 AACAGAUUGCUGACUCCCA 85.9% 4664 GCACUUGCCAGUUGCAUGG 83.7%
4611 UAUCAUUGGGAUCUUGCAC 85.8% 4665 CUACGGAAGGAGUACCUGA 83.7%
4612 ACAUGAGAACAGAAUGGUU 85.8% 4666 UUCUACGGAAGGAGUACCU 83.7%
4613 UACCUGAGUCUAUGAGGGA 85.6% 4667 GGAAGGAGUACCUGAGUCU 83.7%
4614 AUAUCGAAAGGAACAGCAG 85.5% 4668 GGUGCACUUGCCAGUUGCA 83.6%
4615 AUGAGGGAAGAAUAUCGAA 85.4% 4669 GUGCACUUGCCAGUUGCAU 83.6%
4616 UUGCUAGUCAGGCCAGGCA 85.4% 4670 UGCACUUGCCAGUUGCAUG 83.6%
4617 UGAGGGAAGAAUAUCGAAA 85.3% 4671 AGUACCUGAGUCUAUGAGG 83.5%
4618 GGGAAGAAUAUCGAAAGGA 85.3% 4672 GGAGUACCUGAGUCUAUGA 83.5%
4619 GGAAGAAUAUCGAAAGGAA 85.2% 4673 GAGUACCUGAGUCUAUGAG 83.5%
4620 AGGGAAGAAUAUCGAAAGG 85.2% 4674 CAGCAGAAUGCUGUGGAUG 83.4%
4621 AAGAAUAUCGAAAGGAACA 85.2% 4675 AGGAGUACCUGAGUCUAUG 83.3%
4622 GUACCUGAGUCUAUGAGGG 85.2% 4676 GAAGGAGUACCUGAGUCUA 83.2%
4623 GAAGAAUAUCGAAAGGAAC 85.2% 4677 ACAGCAGAAUGCUGUGGAU 83.1%
4624 UGUUCACGCUCACCGUGCC 85.2% 4678 GGAACAGCAGAAUGCUGUG 83.1%
4625 AGAAUAUCGAAAGGAACAG 85.2% 4679 GAACAGCAGAAUGCUGUGG 83.1%
4626 GUGUUCACGCUCACCGUGC 85.2% 4680 AACAGCAGAAUGCUGUGGA 83.1%
4627 GAGGGAAGAAUAUCGAAAG 85.1% 4681 AAGGAGUACCUGAGUCUAU 83.1%
4628 GUUCACGCUCACCGUGCCC 85.1% 4682 CUUGCCAGUUGCAUGGGCC 82.7%
4629 GGCCAGCACUACAGCUAAG 85.0% 4683 UUGCCAGUUGCAUGGGCCU 82.7%
4630 UGUGUUCACGCUCACCGUG 84.9% 4684 AGGAACAGCAGAAUGCUGU 82.7%
4631 UUGUGUUCACGCUCACCGU 84.9% 4685 UGCCAGUUGCAUGGGCCUC 82.3%
4632 UUUGUGUUCACGCUCACCG 84.9% 4686 GCCAGUUGCAUGGGCCUCA 82.3%
4633 UUGUCCAAAAUGCCCUCAA 84.8% 4687 CCAGUUGCAUGGGCCUCAU 82.3%
4634 ACCUGAGUCUAUGAGGGAA 84.8% 4688 CAGUUGCAUGGGCCUCAUA 82.1%
4635 UUUGUCCAAAAUGCCCUCA 84.8% 4689 UGAGUCUAUGAGGGAAGAA 82.1%
4636 AAUGCCCUCAAUGGGAAUG 84.6% 4690 ACUUGCCAGUUGCAUGGGC 82.1%
4637 AGCUAAGGCUAUGGAGCAA 84.6% 4691 UGGUGCACUUGCCAGUUGC 82.0%
4638 AUGCCCUCAAUGGGAAUGG 84.6% 4692 AAGAUGUCUUUGCUGGGAA 81.9%
4639 AGUUGCAUGGGCCUCAUAU 84.5% 4693 UGAAGAUCGUUUGCUUGGG 81.9%
4640 GCAUGGGCCUCAUAUACAA 84.5% 4694 GAAGAUGUCUUUGCUGGGA 81.9%
4641 UGCAUGGGCCUCAUAUACA 84.5% 4695 GUAUCAUUGGGAUCUUGCA 81.5%
4642 GUUGCAUGGGCCUCAUAUA 84.5% 4696 AGUAUCAUUGGGAUCUUGC 81.5%
4643 CUUUGUCCAAAAUGCCCUC 84.5% 4697 AAAUGGUGCAGGCAAUGAG 81.1%
4644 UUGCAUGGGCCUCAUAUAC 84.4% 4698 GCAGAAUGCUGUGGAUGCU 81.1%
4645 UCCAAAAUGGCCUCAAUGG 84.4% 4699 GGACUCAUCCUAGCUCCAG 81.1%
4646 GUCCAAAAUGCCCUCAAUG 84.4% 4700 AGAAUGCUGUGGAUGCUGA 81.1%
4647 UGUCCAAAAUGCCCUCAAU 84.3% 4701 AGCAGAAUGCUGUGGAUGC 81.1%
4648 AGUCAUUUUGUCAGCAUAG 84.2% 4702 GAAUGCUGUGGAUGCUGAC 81.1%
4649 AAAUGCCCUCAAUGGGAAU 84.2% 4703 CGAGUAUCAUUGGGAUCUU 81.1%
4650 AAAAUGCCCUCAAUGGGAA 84.2% 4704 GGGACUCAUCCUAGCUCCA 81.1%
4651 UUGGCCUGGUAUGUGCAAC 84.2% 4705 CAGAAUGCUGUGGAUGCUG 81.1%
4652 CAAAAUGCCCUCAAUGGGA 84.2% 4706 GCGAGUAUCAUUGGGAUCU 81.1%
4653 AUCAGAAACGAAUGGGGGU 84.1% 4707 UGGGACUCAUCCUAGCUCC 81.0%
4708 CAAAUGGUGCAGGCAAUGA 81.0% 4762 GUAUGUUCUCUCUAUCGUU 77.6%
4709 GAGUAUCAUUGGGAUCUUG 81.0% 4763 GUCAGGCCAGGCAAAUGGU 77.6%
4710 GACUCAUCCUAGCUCCAGU 80.9% 4764 AUGUUCUCUCUAUCGUUCC 77.6%
4711 AAUGCUGUGGAUGCUGACG 80.5% 4765 UAGUCAGGCCAGGCAAAUG 77.4%
4712 AGGCAAAUGGUGCAGGCAA 80.2% 4766 CUAGUCAGGCCAGGCAAAU 77.4%
4713 GCAAAUGGUGCAGGCAAUG 80.2% 4767 GCUAGUCAGGCCAGGCAAA 77.4%
4714 GGCAAAUGGUGCAGGCAAU 80.2% 4768 UGCUAGUCAGGCCAGGCAA 77.2%
4715 AUGCUGUGGAUGCUGACGA 80.1% 4769 UUGCUGACUCCCAGCACAG 77.1%
4716 CUGACUAAGGGGAUUUUGG 79.8% 4770 AUUGCUGACUCCCAGCACA 77.1%
4717 UCUGACUAAGGGGAUUUUG 79.8% 4771 GAUUGCUGACUCCCAGCAC 77.1%
4718 UGCACUUGAUAUUGUGGAU 79.8% 4772 GCUGACUCCCAGCACAGGU 77.1%
4719 UGACUAAGGGGAUUUUGGG 79.8% 4773 CAGAUGCAACGAUUCAAGU 77.1%
4720 GCACUUGAUAUUUGUGAUU 79.8% 4774 CUGACUCCCAGCACAGGUC 77.1%
4721 UUGCACUUGAUAUUGUGGA 79.6% 4775 GCAGAUGCAACGAUUCAAG 77.0%
4722 CGUAUGUUCUCUCUAUCGU 79.2% 4776 UGCUGACUCCCAGCACAGG 76.9%
4723 GAAACGUAUGUUCUCUCGA 79.2% 4777 GGAAUGGGGAUCCAAAUAA 76.8%
4724 AUAAUUGUGGAUUCUGAUC 79.2% 4778 GGGAAUGGGGAUCCAAAUA 76.8%
4725 ACGUAUGUUCUCUCUAUCG 79.2% 4779 GAGGGCCUUCUACGGAAGG 76.8%
4726 AACGUAUGUUCUCUCUAUC 792% 4780 AUCUUGCACUUGAUAUUGU 76.7%
4727 AAACGUAUGUUCUCUCUAU 79.2% 4781 UCUUGCACUUGAUAUUGUG 76.7%
4728 CCAGGCAAAUGGUGCAGGC 79.1% 4782 CUUGCACUUGAUAUUGUGG 76.7%
4729 GAUAUUGUGGUUUCUUGAU 79.1% 4783 AUGGGAAUGGGGAUCCAAA 76.6%
4730 UGAUAUUGUGGAUUCUUGA 79.1% 4784 AGGGCCUUCUACGGAAGGA 76.6%
4731 AGGUCGAAACGUAUGUUCU 79.1% 4785 AAUGGGAAUGGGGAUCCAA 76.6%
4732 GAGGUCGAAACGUAUGUUC 79.1% 4786 GAUGCAACGAUUCAAGUGA 76.5%
4733 GGUCGAAACGUAUGUUCUC 79.1% 4787 ACAUUCCAUGGGGCCAAAG 76.5%
4734 GUCGAAACGUAUGUUCUCU 79.1% 4788 AGAUGCAACGAUUCAAGUG 76.5%
4735 CGAAACGUAUGUUCUCUCU 79.1% 4789 AAAAGAGGGCCUUCUACGG 76.4%
4736 UCGAAACGUAUGUUCUCUC 79.1% 4790 CAUUCCAUGGGGCCAAAGA 76.4%
4737 UAUUGUGGAUUCUUGAUCG 79.0% 4791 AGGCAAAUGGUGGCAACAA 76.4%
4738 CACUUGAUAUUGUGGAUUC 78.9% 4792 GGCAAAUGGUGGCAACAAC 76.4%
4739 ACUUGAUAUUGUGGAUUCU 78.9% 4793 CAAAUGGUGGCACAAUCCA 76.3%
4740 CUUGAUUUGUUGGAUUCUU 78.9% 4794 AUUGCCUGGGGCCAAAGAA 76.3%
4741 GCCAGGCAAAUGGUGCAGG 78.9% 4795 AAAUGGUGGCAACAACCAA 76.3%
4742 UGUAUUAUGUUGAUUCUUG 78.7% 4796 AACUUAAGAGGGAGAUAAC 76.2%
4743 CGCAGAGACUUGAAGAUGU 78.7% 4797 AGAGGGCCUUCUACGGAAG 76.2%
4744 GCGCAGAGACUUGAAGAUG 78.7% 4798 UGGGAAUGGGGAUCCAAAU 76.2%
4745 GGCCAGGCAAAUGGUGCAG 78.6% 4799 AAGAGGGCCUUCUACGGAA 76.2%
4746 AGGCCAGGCAAAUGGUGCA 78.6% 4800 AAACUUAAGAGGGAGAUAA 76.2%
4747 AUUGUGGAUUCUUGAUCGU 78.5% 4801 AAAGAGGGCCUUCUACGGA 76.2%
4748 UUGUGGAUUCUUGAUCGUC 78.5% 4802 CAGUCAUUUUGUCAGCAUA 76.1%
4749 CAGGCAAAUGGUGCAGGCA 78.4% 4803 CCUGUCACCUCUGACUAAG 76.0%
4750 GGGCCUUCUACGGAAGGAG 78.4% 4804 GCAAAUGGUGGCAACAACC 76.0%
4751 GGCCUUCUACGGAAGGAGU 78.4% 4805 UGCUGUGGAUGCUGACGAC 75.9%
4752 CGCGCAGAGACUUGAAGAD 78.3% 4806 ACAGUCAUUUUGUCAGCAU 75.8%
4753 UCGCGCAGAGACUUGAAGA 78.3% 4807 AUCAGGCCCCCUCAAAGCC 75.6%
4754 AUCGCGCAGAGACUUGAAG 78.2% 4808 CCAUCAGGCCCCCUCAAAG 75.6%
4755 CAGGCCAGGCAAAUGGUGC 78.1% 4809 GGAUCUUGCACUUGAUAUU 75.6%
4756 GCAGAGACUUGAAGAUGUC 77.9% 4810 CAUCAGGCCCCCUCAAAGC 75.6%
4757 AUCCUGUCACCUCUGACUA 77.9% 4811 GGGAUCUGCACUUGAUUAU 75.6%
4758 UCCUGUCACCUCUGACUAA 77.8% 4812 GAUCUUGCACUUGAUAUUG 75.5%
4759 UCAGGCCAGGCAAAUGGUG 77.8% 4813 GGAUGCUGACGACAGUCAU 75.4%
4760 UAUGUUCUCUCUAUCGUUC 77.6% 4814 GCUGUGGAUGCUGACGACA 75.4%
4761 AGUCAGGCCAGGCAAAUGG 77.6% 4815 AUGCUGACGACAUCAUUUU 75.4%
4816 UGGAUGCUGACGACAGUCA 75.4% 4870 UUGAAAAUUUGCAGACCUA 74.0%
4817 GAUGCUGACGACAGUCAUU 75.4% 4871 CUUCUUGAAAAUUUGCAGA 74.0%
4818 CUGUGGAUGCUGACGACAG 75.3% 4872 UCUUGAAAAUUUGCAGACC 74.0%
4819 UGCUGACGACAGUCAUUUU 75.3% 4873 CUUGAAAAUUUGCAGACCU 74.0%
4820 UGUGGAUGCUGACGACAGU 75.3% 4874 UUCUUGAAAAUUUGCAGAC 74.0%
4821 GUGGAUGCUGACGACAGUC 75.3% 4875 UCGAAAGGAACAGCAGAAU 73.9%
4822 GCCUUCUACGGAAGGAGUA 75.2% 4876 CCCAGUGAGCGAGGACUGC 73.7%
4823 GCUGACGACAGUCAUUUUG 75.1% 4877 CAUUUUGUCAGCAUAGAGC 73.7%
4824 ACGACAGUCAUUUUGUCAG 75.0% 4878 CCAGUGAGCGAGGACUGCA 73.7%
4825 GACGACAGUCAUUUUGUCA 75.0% 4879 GUGCCCAGUGAGCGAGGAC 73.6%
4826 UGACGACAGUCAUUUUGUC 75.0% 4880 GCCCAGUGAGCGAGGACUG 73.6%
4827 CUGACGACAGUCAUUUUGU 75.0% 4881 UGCCCAGUGAGCGAGGACU 73.6%
4828 GACAGUCAUUUUGUCAGCA 75.0% 4882 CUUAAGAGGGAGAUAACAU 73.5%
4829 CGACAGUCAUUUUGUCAGC 75.0% 4883 UUAAGAGGGAGAUAACAUU 73.5%
4830 UGGUGGCAACAACCAAUCC 75.0% 4884 CACCGUGCCCAGUGAGCGA 73.4%
4831 AAUGGUGGCAACAACCAAU 74.9% 4885 AAUGGUGCAGGCAAUGAGA 73.4%
4832 GGUGGCAACAACCAAUCCA 74.9% 4886 AAGAGGGAGAUAACAUUCC 73.4%
4833 AUGGUGGCAACAACCAAUC 74.9% 4887 CGUGCCCAGUGAGCGAGGA 73.4%
4834 AAGACAAGACCAAUCCUGU 74.8% 4888 CCGUGCCCAGUGAGCGAGG 73.4%
4835 CAAGACCAAUCCUGUCACC 74.8% 4889 GAGGGAGAUAACAUUCCAU 73.4%
4836 UACGCAAAUGGUGGCAACA 74.8% 4890 AGAGGGAGAUAACAUUCCA 73.4%
4837 GACAAGACCAAUCCUGUCA 74.8% 4891 ACCGUGCCCAGUGAGCGAG 73.4%
4838 AGACAAGACCAAUCCUGUC 74.8% 4892 UGUUCUCUCUAUCGUUCCA 73.1%
4839 GACCAAUCCUGUCACCUCU 74.8% 4893 AAAAACACAGAUCUUGAGG 73.1%
4840 AGACCAAUCCUGUCACCUC 74.8% 4894 AUUUUGUCAGCAUAGAGCU 73.1%
4841 GCUAAAGACAAGACCAAUC 74.8% 4895 UUCUCUCUAUCGUUCCAUC 73.1%
4842 ACAAGACCAAUCCUGUCAC 74.8% 4896 GUUCUCUCUAUCGUUCCAU 73.1%
4843 AAGACCAAUCCUGUCACCU 74.8% 4897 GGAAAAACACAGAUCUUGA 73.0%
4844 AUAGGCAAAUGGUGGCAAC 74.7% 4898 AAACACAGAUCUUGAGGCU 73.0%
4845 UAAAGACAAGACCAAUCCU 74.7% 4899 GGGAAAAACACAGAUCUUG 73.0%
4846 AAAGACAAGACCAAUCCUG 74.7% 4900 AAAACACAGAUCUUGAGGC 73.0%
4847 CUAAAGACAAGACCAAUCC 74.7% 4901 UAAGAGGGAGAUAACAUUC 73.0%
4848 CAAUCCUGUCACCUCUGAC 74.6% 4902 GAUGUCUUUGCUGGGAAAA 72.9%
4849 CAUAGGCAAAUGGUGGCAA 74.6% 4903 GAAAAACACAGAUCUUGAG 72.9%
4850 AAGGAACAGCAGAAUGCUG 74.6% 4904 UCUCUCUAUCGUUCCAUCA 72.8%
4851 CCAAAUCCUGUCACCUCDA 74.6% 4905 UCCAUCAGGCCCCCUCAAA 72.8%
4852 ACAACCAAUCCAUUAAUAA 74.5% 4906 UUCCAUCAGGCCCCCUCAA 72.8%
4853 AUAACAUUCCAUGGGGCCA 74.4% 4907 CUCUCUAUCGUUCCAUCAG 72.8%
4854 UAACAUUCCAUGGGGCCAA 74.4% 4908 GUUCCAUCAGGCCCCCUCA 72.8%
4855 AGAUAACAUUCCAUGGGGC 74.4% 4909 UCUAUCGUUCCAUCAGGCC 72.8%
4856 GAGAUAACAUUCCAUGGGG 74.4% 4910 UGUCUUUGCUGGGAAAAAC 72.8%
4857 AACAUUCCAUGGGGCCAAA 74.3% 4911 UAUCGUUCCAUCAGGCCCC 72.8%
4858 CAACAACCAAUCCAUUAAU 74.3% 4912 GUCUUUGCUGGGAAAAACA 72.8%
4859 AACAACCAAUCCAUUAAUA 74.3% 4913 AUGUCUUUGCUGGGAAAAA 72.8%
4860 ACCAAUCCUGUCACCUCUG 74.2% 4914 UCUUUGCUGGGAAAAACAC 72.8%
4861 GAAAGGAACAGCAGAAUGC 74.2% 4915 CGUUCCAUUCAGGCCCCUC 72.8%
4862 AAAGGAACAGCAGAAUGCU 74.2% 4916 CUAUCGUUCCAUCAGGCCC 72.8%
4863 GGGAGAUAACAUUCCAUGG 74.1% 4917 CUCUAUCGUUCCAUCAGGC 72.8%
4864 CGAAAGGAACAGCAGAAUG 74.1% 4918 UCGUUCCAUCAGGCCCCCU 72.8%
4865 GGAGAUAACAUUCCAUGGG 74.1% 4919 AUCGUUCCAUCAGGCCCCC 72.8%
4866 AAUCCUGUCACCUCUGACU 74.1% 4920 UCUCUAUCGUUCCAUCAGG 72.8%
4867 AGGGAGAUAACAUUCCAUG 74.1% 4921 GGAUCAAGUGAGCAGGCAG 72.7%
4868 GAUAACAUUCCAUGGGGCC 74.1% 4922 CUAACCGAGGUCGAAACGU 72.7%
4869 AUCGAAAGGAACAGCAGAA 74.1% 4923 AUGGCUGGAUCAAGUGAGC 72.7%
4924 GAUCAAGUGAGCAGGCAGC 72.7% 4973 GGCUGGAUCAAGUGAGCAG 71.5%
4925 UGGCUGGAUCAAGUGAGCA 72.7% 4974 UAGCACUCAGUUAUUCUGC 71.5%
4926 UUCUAACCGAGGUCGAAAC 72.6% 4975 AUAGCACUCAGUUAUUCUG 71.4%
4927 UAACCGAGGUCGAAACGUA 72.6% 4976 AAGAAAUAGCACUCAGUUA 71.4%
4928 UCUAACCGAGGUCGAAACG 72.6% 4977 GCUGGAUCAAGUGAGCAGG 71.4%
4929 GCUGGGAAAAACACAGAUC 72.6% 4978 AAAGAAAUAGCACUCAGUU 71.4%
4930 UGCUGGGAAAAACACAGAU 72.6% 4979 CUGGAUCAAGUGAGCAGGC 71.4%
4931 UCAAGUGAGCAGGCAGCGG 72.6% 4980 AAUAGCACUCAGUUAUUCU 71.3%
4932 CAAGUGAGCAGGCAGCGGA 72.6% 4981 UGGAUCAAGUGAGCAGGCA 71.3%
4933 CUGGGAAAAACACAGAUCU 72.6% 4982 AGCACUCAGUUAUUCUGCU 71.3%
4934 UGGUAUGUGCAACAUGUGA 72.6% 4983 GAAAUAGCACUCAGUUAUU 71.3%
4935 UUGCUGGGAAAAACACAGA 72.6% 4984 AAAUAGCACUCAGUUAUUC 71.3%
4936 AGAUGUCUUUGCUGGGAAA 72.6% 4985 AAUGGCUGGAUCAAGUGAG 71.3%
4937 UUUGCUGGGAAAAACACAG 72.6% 4986 AAUGGGGAUCCAAAUAACA 71.2%
4938 UGGGAAAAACACAGAUCUU 72.5% 4987 AGAAAUAGCACUCAGUUAU 71.2%
4939 CUUUGCUGGGAAAAACACA 72.5% 4988 UGGGGAUCCAAAUAACAUG 71.2%
4940 CUGGUAUGUGCAACAUGUG 72.5% 4989 AUGGGGAUCCAAAUAACAU 71.2%
4941 CUUCUAACCGAGGUCGAAA 72.5% 4990 GGCCAAAGAAAUAGCACUC 71.1%
4942 CGAGGACUGCAGCGUAGAC 72.4% 4991 GCCAAAGAAAUAGCACUCA 71.1%
4943 GAGCGAGGACUGCAGCGUA 72.4% 4992 CCAAAGAAAUAGCACUCAG 71.1%
4944 GAGGACUGCAGCGUAGACG 72.4% 4993 CAAAGAAAUAGCACUCAGU 70.9%
4945 UGAGCGAGGACUGCAGCGU 72.3% 4994 GAAUGGGGAUCCAAAUAAC 70.9%
4946 GGUUUGUGUUCACGCUCAC 72.2% 4995 CAGGCAGCGGAGGCCAUGG 70.7%
4947 GGGUUUGUGUUCACGCUCA 72.2% 4996 AGGCAGCGGAGGCCAUGGA 70.7%
4948 CACUCAGUUAUUCUGCUGG 72.2% 4997 GUGAGCAGGCAGCGGAGGC 70.6%
4949 AAAUGGCUGGAUCAAGUGA 72.1% 4998 AUUGCUAGUCAGGCCAGGC 70.6%
4950 GCGAGGACUGCAGCGUAGA 72.1% 4999 AGUGAGCAGGCAGCGGAGG 70.6%
4951 CAAAUGGCUGGAUCAAGUG 72.1% 5000 AAGUGAGCAGGCAGCGGAG 70.6%
4952 AGUGAGCGAGGACUGCAGC 72.1% 5001 GAGCAGGCAGCGGAGGCCA 70.5%
4953 GUGAGCGAGGACUGCAGCG 72.1% 5002 GCAGGCAGCGGAGGCCAUG 70.5%
4954 ACUCAGUUAUUCUGCUGGU 72.1% 5003 AGCAGGCAGCGGAGGCCAU 70.5%
4955 AGCGAGGACUGCAGCGUAG 72.1% 5004 UGAGCAGGCAGCGGAGGCC 70.5%
4956 GUUUGUGUUCACGCUCACC 72.0% 5005 AGGACUGCAGCGUAGACGC 70.4%
4957 CAGUGAGCGAGGACUGCAG 71.9% 5006 ACAUGUGAACAGAUUGCUG 70.4%
4958 GGAUCCAAAUAACAUGGAC 71.8% 5007 CAUGUGAACAGAUUGCUGA 70.4%
4959 GGGAUCCAAAUAACAUGGA 71.8% 5008 AUGUGAACAGAUUGCUGAC 70.2%
4960 GCACUCAGUUAUUCUGCUG 71.8% 5009 GAUAUUGAAAGAUGAGCCU 70.2%
4961 UGGCCUGGUAUGUGCAACA 71.8% 5010 UAUUGAAAGAUGAGCCUUC 70.2%
4962 GGGGAUCCAAAUAACAUGG 71.8% 5011 AGAUAUUGAAAGAUGAGCC 70.2%
4963 GCCUGGUAUGUGCAACAUG 71.8% 5012 AUUGAAAGAUGAGCCUUCU 70.2%
4964 GGCCUGGUAUGUGCAACAU 71.8% 5013 AUAUUGAAAGAUGAGCCUU 70.2%
4965 CCUGGUAUGUGCAACAUGU 71.8% 5014 AUGGUUUUGGCCAGCACUA 70.2%
4966 GAGCAAAUGGCUGGAUCAA 71.6% 5015 UGGUUUUGGCCAGCACUAC 70.2%
4967 GGAGCAAAUGGCUGGAUCA 71.6% 5016 UAGAUAUUGAAAGAUGAGC 70.1%
4968 AGCAAAUGGCUGGAUCAAG 71.6% 5017 UGUGCAACAUGUGAACAGA 70.0%
4969 GCAAAUGGCUGGAUCAAGU 71.6% 5018 CGUCUUUUUUUCAAAUGCA 70.0%
4970 UGGGGCCAAAGAAAUAGCA 71.6% 5019 UGAAAAGAGGGCCUUCUAC 70.0%
4971 GGGGCCAAAGAAAUAGCAC 71.5% 5020 GUGCAACAUGUGAACAGAU 70.0%
4972 GGGCCAAAGAAAUAGCACU 71.5%
表2-8在表1-8所列甲型流感片段2(NS1&NS2)序列中以至少70%存在的保守19-mer
序列
Seq
序列 百分比 5021 AUAACACAgUUCGAGUCUC 98.2%
ID
5022 UAACACAGUUCGAGUCUCU 98.2% 5076 AAGAUGGCUGAUUGAAGAA 91.9%
5023 UGAAUGGAAUGAUAACACA 98.0% 5077 CUAAGGGCUUUCACCGAAG 91.9%
5024 GAAUGGAAUAUUAAACAGG 98.0% 5078 AAGGGCUUUCACCGAAGAG 91.8%
5025 UGGAAUGAUAACACAAUUC 98.0% 5079 UAAGGGCUUUCACCGAAGA 91.8%
5026 AUGGAAUGAUAACACAGUG 97.9% 5080 GAUGGCUGAUUGAAGAAGU 91.7%
5027 AAUGGAAUGAUAACACAGU 97.9% 5081 AGAUGGCUGAUUGAAGAAG 91.7%
5028 UUGAAUGGAAUGAUAACAC 97.8% 5082 ACUAAGGGCUUUCACCGAA 91.4%
5029 UGAUAACACAGUUCGAGUC 97.7% 5083 UACUAAGGGCUUUCACCGA 91.3%
5030 AUGAUAACACAGUUCGAGU 97.6% 5084 AAAGCGAAUUUCAGUGUGA 91.2%
5031 GGAAUGAUAACACAGUUCG 97.6% 5085 AAGCGAAUUUCAGUGUGAU 91.0%
5032 GAAUGAUAACACAGUUCGA 97.6% 5086 GGCUUUCACCGAAGAGGGA 90.9%
5033 AAUGAUAACACAGUUCGAG 97.6% 5087 GCUUUCACCGAAGAGGGAG 90.8%
5034 CUUGAAUGGAAUGAUAACA 97.5% 5088 AUUACUAAGGGCUUUCACC 90.8%
5035 GAUAACACAGUUCGAGUCU 97.1% 5089 UUACUAAGGGCUUUCACCG 90.8%
5036 AUGUCAAAAAUGCAAUUGG 96.9% 5090 AAGAGGGAGCAAUUGUUGG 90.4%
5037 GGAUGUCAAAAAUGCAAUU 96.9% 5091 GAAGAGGGAGCAAUUGUUG 90.4%
5038 AGGAUGUCAAAAAUGCAAU 96.9% 5092 AGAGGGAGCAAUUGUUGGC 90.3%
5039 GAGGAUGUCAAAAAUGCAA 96.8% 5093 UCACCGAAGAGGGAGCAAU 90.3%
5040 GAUGUCAAAAAUGCAAUUG 96.8% 5094 UUUCACCGAAGAGGGAGCA 90.2%
5041 UGAGGAUGUCAAAAAUGCA 96.4% 5095 UUCACCGAAGAGGGAGCAA 90.2%
5042 CGGCUUCGCCGAGAUCAGA 96.2% 5096 CUUUCACCGAAGAGGGAGC 90.1%
5043 UGUCAAAAAUGCAAUUGGG 95.6% 5097 CCGAAGAGGGAGCAAUUGU 90.0%
5044 UCUACAGAGAUUCGCUUGG 95.5% 5098 ACCGAAGAGGGAGCAAUUG 90.0%
5045 GCAAUUGGGGUCCUCAUCG 94.8% 5099 CGAAGAGGGAGCAAUUGUU 90.0%
5046 CAAUUGGGGUCCUCAUCGG 94.8% 5100 CACCGAAGAGGGAGCAAUU 90.0%
5047 UGCAAUUGGGGUCCUCAUC 94.8% 5101 UUGGGGUCCUCAUCGGAGG 89.7%
5048 UCAAAAAUGCAAUUGGGGU 94.4% 5102 AUUGGGGUCCUCAUCGGAG 88.8%
5049 GUCAAAAAUGCAAUUGGGG 94.4% 5103 AAUUGGGGUCCUCAUCGGA 87.8%
5050 AAAAAUGCAAUUGGGGUCC 94.3% 5104 AUGAGGCACUUAAAAUGAC 87.7%
5051 AAAAUGCAAUUGGGGUCCU 94.3% 5105 AACACAGUUCGAGUCUCUA 87.5%
5052 AUGCAAUUGGGGUCCUCAU 94.3% 5106 ACACAGUUCGAGUCUCUAA 87.5%
5053 CAAAAAUGCAAUUGGGGUC 94.3% 5107 GAUGAGGCACUUAAAAUGA 87.3%
5054 AAAUGCAAUUGGGGUCCUC 94.3% 5108 ACAGAAACGGAAAAUGGCG 87.1%
5055 AAUGCAAUUGGGGUCCUCA 94.2% 5109 ACAGUUCGAGUCUCUAAAA 86.9%
5056 UGAAAGCGAAUUUCAGUGU 93.8% 5110 CACAGUUCGAGUCUCUAAA 86.9%
5057 UUGAUCGGCUUCGCCGAGA 93.7% 5111 AAGCAGUAAUGAGAAUGGG 86.1%
5058 CUUGAUCGGCUUCGCCGAG 93.6% 5112 UGAGGCACUUAAAAUGACC 86.0%
5059 GAAAGCGAAUUUCAGUGUG 93.6% 5113 GAAGCAGUAAUGAGAAUGG 85.8%
5060 AUCGGCUUCGCCGAGAUCA 93.4% 5114 GGUUCAUGCUAAUGCCCAA 85.8%
5061 GAUCGGCUUCGCCGAGAUC 93.4% 5115 GAGGCACUUAAAAUGACCA 85.8%
5062 UGAUCGGCUUCGCCGAGAU 93.4% 5116 AGGCACUUAAAAUGACCAU 85.8%
5063 UCGGCUUCGCCGAGAUCAG 93.2% 5117 ACUGGUUCAUGCUAAUGCC 85.7%
5064 GAGCAAUUGUUGGCGAAAU 92.8% 5118 UGGUUCAUGCUAAUGCCCA 85.7%
5065 GGAGCAAUUGUUGGCGAAA 92.8% 5119 CUGGUUCAUGCUAAUGCCC 85.5%
5066 UCCUUGAUCGGGCUUCGCC 92.7% 5120 GGCACUUAAAAUGACCAUG 85.3%
5067 UCCUUGAUCGGCUUCGCCG 92.7% 5121 UUGAAAGCGAAUUUCAGUG 85.2%
5068 GGGAGCAAUUGUUGGCGAA 92.7% 5122 GCACUUAAAAUGACCAUGG 85.2%
5069 AGGGAGCAAUUGUUGGCGA 92.5% 5123 UCAUGCUAAUGCCCAAGCA 85.1%
5070 CCUUGAUCGGCUUCGCCGA 92.4% 5124 UACAGACAUUCGCUUGGAG 84.7%
5071 GAGGGAGCAAUUGUUGGCG 92.3% 5125 UACUAUUGAGGAUGUCAAA 84.7%
5072 AGGGCUUUCACCGAAGAGG 92.3% 5126 ACAGAGAUUCGCUUGGAGA 84.7%
5073 GGGCUUUCACCGAAGAGGG 92.2% 5127 CAUACUAUUGAGGAUGUCA 84.7%
5074 AUAGAUGGCUGAUUGUAAG 92.1% 5128 GUUCAUGCUAAUGCCCAAG 84.7%
5075 UAAGAUGGCUGAUUGAAGA 92.1% 5129 AUACUAUUGAGGAUGUCAA 84.7%
5130 UUCAUGCUAAUGCCCAAGC 84.7% 5184 CAUCAUGUUGAAAGCGAAU 81.3%
5131 UGGCUGAUUGAAGAAGUGA 84.7% 5185 AUGCCCCAUUCCUUGAUCG 81.3%
5132 GGCUGAUUGAAGAAGUGAG 84.7% 5186 GAUGCCCCAUUCCUUGAUC 81.3%
5133 ACUAUUGAGGAUGUCAAAA 84.6% 5187 GGCGAAAUCUCACCAUUGC 81.2%
5134 ACAUACUAUUGAGGAUGUC 84.5% 5188 UUGUUGGCGAAAUCUCACC 81.1%
5135 CAGAGAUUCGCUUGGAGAA 84.5% 5189 UUGGCGAAAUCUCACCAUU 81.0%
5136 UUCCAGGACAUACUAUUGA 84.4% 5190 AGAAACGGAAAAUGGCGAG 81.0%
5137 UUGAGGAUGUCAAAAAUGC 84.4% 5191 UGUUGGCGAAAUCUCACCA 81.0%
5138 CAGGACAUACUAUUGAGGA 84.4% 5192 UGAUUGAAGAAGUGAGACA 81.0%
5139 GGACAUACUAUUGAGGAUG 84.4% 5193 GAAACGGAAAAUGGCGAGA 80.9%
5140 AGGACAUACUAUUUGAGAU 84.4% 5194 UGGCGAAAUCUCACCAUUG 80.9%
5141 CCAGGACAUACUAUUGAGG 84.4% 5195 CCAAAACAGAACGGAAAAA 80.9%
5142 GACAUACUAUUUGAGAUGU 84.4% 5196 AUUGUUGGCGAAAUCUCAC 80.9%
5143 UCCAGGACAUACUAUUGAG 84.4% 5197 AAUUGUUGGCGAAAUCUCA 80.9%
5144 AUGGCUGAUUGAAGAAGUG 84.3% 5198 UGACUAUUGAGGAAUUGUC 80.9%
5145 CUAUUGAGGAUGUCAAAAA 84.2% 5199 GUUGGCGAAAUCUCACCAU 80.9%
5146 AUUGAGGAUGUCAAAAAUG 84.2% 5200 CUAUUGAGGAAUUGUCAAG 80.8%
5147 UAUUGAGGAUGUCAAAAAU 84.2% 5201 ACUAUUGAGGAAUUGUCAA 80.8%
5148 UAUUACUAAGGGCUUUCAC 84.1% 5202 CAGAAACGGAAAAUGGCGA 80.8%
5149 CCAUUCCUUGAUCGGCUUC 84.0% 5203 GACUAUUGAGGAAUUGUCA 80.8%
5150 AUUCCUUGAUCGGCUUCGC 83.8% 5204 ACAUCAUGUUGAAAGCGAA 80.7%
5151 GAGAUUCGCUUGGAGAAGC 83.8% 5205 CCCCAUUCCUUGAUCGGCU 80.7%
5152 AGAGAUUCGCUUGGAGAAG 83.8% 5206 ACGGAAAAUGGCGAGAACA 80.5%
5153 CAUUCCUUGAUCGGCUUCG 83.8% 5207 UGCCCCAUUCCUUGAUCGG 80.5%
5154 CUACAGAGAUUCGCUUGGA 83.7% 5208 AACGGAAAAUGGCGAGAAC 80.5%
5155 AGAUUCGCUUGGAGAAGCA 83.4% 5209 GCCCCAUUCCUUGAUCGGC 80.4%
5156 AUUCGCUUGGAGAAGCAGU 83.0% 5210 AUGACUAUUGAGGAAUUGU 80.4%
5157 GUGAUGCCCCAUUCCUUGA 83.0% 5211 AAAUCUCACCAUUGCCUUC 80.4%
5158 GAUUCGCUUGGAGAAGCAG 83.0% 5212 AAACGGAAAAUGCCGAGAA 80.4%
5159 UUGGAGAAGCAGUAAUGAG 82.7% 5213 GAAAUCUCACCAUUGCCUU 80.4%
5160 CUUGGAGAAGCAGUAAUGA 82.7% 5214 CGAAAUCUCACCAUUGCCU 80.3%
5161 GAAGAGAUAAGAUGGCUGA 82.1% 5215 AACAUCAUGUUGAAAGCGA 80.3%
5162 AAGAGAUAAGAUGGCUGAU 82.1% 5216 GCAAUUGUUGGCGAAAUCU 80.3%
5163 AGAUAAGAUGGCUGAUUGA 82.0% 5217 CAAUUGUUGGCGAAAUCUC 80.2%
5164 GAUAAGAUGGCUGAUUGAA 81.9% 5218 GCGAAAUCUCACCAUUGCC 80.2%
5165 GUUGAAAGCGAAUUUCAGU 81.9% 5219 CCCAUUCCUUGAUCGGCUU 80.2%
5166 GCUUGGAGAAGCAGUAAUG 81.9% 5220 AUUGAAGAAGUGAGACACA 80.1%
5167 UGGAGAAGCAGUAAUGAGA 81.9% 5221 AAUCUCACCAUUGCCUUCU 80.0%
5168 GAGAUAAGAUGGCUGAUUG 81.9% 5222 AACAGAAACGGAAAAUGGC 80.0%
5169 UUCGCUUGGAGAAGCAGUA 81.9% 5223 UGAUGCCCCAUUCCUUGAU 80.0%
5170 AGAGAUAAGAGGCUGAAUU 81.8% 5224 GCUGAUUGAAGAAGUGAGA 79.6%
5171 UCGCUUGGAGAAGCAGUAA 81.7% 5225 CUGAUUGAAGAAGUGAGAC 79.6%
5172 CGCUUGGAGAAGCAGUAAU 81.7% 5226 UUCUUUUCCAGGACAUACU 79.3%
5173 CAUGUUGAAAGCGAAUUUC 81.6% 5227 ACUCCAAAACAGAAACGGA 79.3%
5174 UCAUGUUGAAAGCGAAUUU 81.6% 5228 UCCCUAAGGGGAAGAGGCA 79.3%
5175 UGUUGAAAGCGAAUUUCAG 81.6% 5229 AGCAAUUGUUGGCGAAAUC 79.1%
5176 UAACUGACAUGACUAUUGA 81.6% 5230 UCUUUUCCAGGACAUACUA 79.1%
5177 AUGUUGAAAGCGAAUUUCA 81.6% 5231 GAUUGAAGAAGUGAGACAC 78.8%
5178 CAAAACAGAAACGGAAAAU 81.5% 5232 AUUCCAACACUGUGUCAAG 78.6%
5179 AAAACAGAAACGGAAAAUG 81.5% 5233 CUUCUUUUCCAGGACAUAC 78.5%
5180 AAACAGAAACGGAAAAUGG 81.5% 5234 ACCAUUGCCUUCUUUUCCA 78.5%
5181 UCCAAAACAGAAACGGAAA 81.5% 5235 CCAUUGCCUUCUUUUCCAG 78.5%
5182 CUCCAAAACAGAAACGGAA 81.4% 5236 CAUUGCCUUCUUUUCCAGG 78.4%
5183 AUCAUGUUGAAAGCGAAUU 81.4% 5237 CCUUCUUUUCCAGGACAUA 78.4%
5238 GCCUUCUUUUUCCAGACAU 78.4% 5292 CCAACACUGUGUCAAGUUU 75.3%
5239 UGCCUUCUUUUCCAGGACA 78.4% 5293 AGAAGCAGUAAUGAGAAUG 75.3%
5240 CACCAUUGCCUUCUUUUCC 78.3% 5294 AGUGGAACAGGAGAUAAGA 75.3%
5241 UUGCCUUCUUUUCCAGGAC 78.3% 5295 CUUACUCCAAAACAGAAAC 75.2%
5242 UGGAUUCCAACACUGUGUC 78.3% 5296 CUCACCAUUGCCUUCUUUU 75.1%
5243 AUGGAUUCCAACACUGUGU 78.3% 5297 UCUCACCAUUGCCUUCUUU 75.1%
5244 UCACCAUUGCCUUCUUUUC 78.3% 5298 AUCUCACCAUUGCCUUCUU 75.1%
5245 GGAUUCCAACACUGUGUCA 78.3% 5299 UCCAACACUGUGUCAAGUU 75.0%
5246 AUUGCCUUCUUUUCCAGGA 78.2% 5300 UACUCCAAAACAGAAACGG 74.8%
5247 GAUUCCAACACUGUGUCAA 78.2% 5301 UUACUCCAAAACAGAAACG 74.8%
5248 UUGAAGAAGUGAGACACAG 77.8% 5302 UUCCAACACUGUGUCAAGU 74.7%
5249 UUGAAGUGGAACAGGAGAU 77.7% 5303 AUCAGAAUGGACCAGGCAA 74.5%
5250 UUUGAAGUGGAACAGGAGA 77.7% 5304 UAAUGAGAAUGGGGGACCU 74.0%
5251 UGAAGAAGUGAGACACAGA 77.2% 5305 UAAUGGAUUCCAACACUGU 74.0%
5252 CUGACAUGACUAUUGAGGA 77.2% 5306 CAAGUUUCCAGGUAGAUUG 74.0%
5253 UGACAUGACUAUUGAGGAA 77.2% 5307 CAUAAUGGAUUCCAACACU 73.9%
5254 CAAAUAACAUUCAUGCAAG 77.0% 5308 CAGUAAUGAGAAUGGGGGA 73.9%
5255 AAAUAACAUUCAUGCAAGC 77.0% 5309 GCAGUAAUGAGAAUGGGGG 73.9%
5256 ACUGACAUGACUAUUGAGG 77.0% 5310 UCAAGUUUCCAGGUAGAUU 73.9%
5257 CUUUUCCAGGACAUACUAU 76.9% 5311 AAUGGAUUCCAACACUGUG 73.%
5258 UUUUCCAGGACAUACUAUU 76.9% 5312 ACAUAAUGGAUUCCAACAC 73.9%
5259 UUUCCAGGACAUACUAUUG 76.8% 5313 AGUAAUGAGAAUGGGGGAC 73.8%
5260 AAACAAGUUGUAGACCAAG 76.8% 5314 AAUGAGAAUGGGGGACCUC 73.8%
5261 ACAAGUUGUAGACCAAGAA 76.7% 5315 GUAAUGAGAAUGGGGGACC 73.7%
5262 AAGUUGUAGACCAAGAACU 76.7% 5316 AGCAGUAAUGAGAAUGGGG 73.7%
5263 AACAAGUUGUAGACCAAGA 76.7% 5317 UGUCAAGUUUCCAGGUAGA 73.7%
5264 GAAUCUGAUGAGGCACUUA 76.7% 5318 CCACACCUGCUUCGCGAUA 73.6%
5265 AGAAUCUGAUGAGGCACUU 76.6% 5319 UCCACACCUGCUUCGCGAU 73.6%
5266 AACUGACAUGACUAUUGAG 76.5% 5320 ACAUGACUAUUGAGGAAUU 73.6%
5267 AAUCUGAUGAGGCACUUAA 76.5% 5321 CUCCACACCUGCUUCGCGA 73.6%
5268 UCUGAUGAGGCACUUAAAA 76.5% 5322 CACACCUGCUUCGCGAUAC 73.6%
5269 UGAUGAGGCACUUAAAAUG 76.5% 5323 UGUGUCAAGUUUCCAGGUA 73.6%
5270 CUGAUGAGGCCACUAAAAU 76.5% 5324 GACAUGACUAUUGAGGAAU 73.6%
5271 CAAGUUGUAGACCAAGAAC 76.5% 5325 GUGUCAAGUUUCCAGGUAG 73.6%
5272 CCACCCAUGUUGGAAAGCA 76.2% 5326 ACUGUGUCAAGUUUCCAGG 73.5%
5273 AUCUGAUGAGGCACUUAAA 76.2% 5327 CUGUGUCAAGUUUCCAGGU 73.5%
5274 AGCCACCCAUGUUGGAAAG 76.2% 5328 AUAAUGGAUUCCAACACUG 73.5%
5275 GCCACCCAUGUUGGAAAGC 76.2% 5329 GUCAAGUUUCCAGUAGAU 73.5%
5276 CAGCCACCCAUGUUGGAAA 76.2% 5330 CACCUGCUUCGCGAUACAU 73.5%
5277 GAAGUGGAACAGGAGAUAA 76.0% 5331 ACACCUGCUUCGCGAUACA 73.4%
5278 AAGUGGAACAGGAGAUAAG 75.9% 5332 CAUCAGAAUGGACCAGGCA 73.4%
5279 UGAAGUGGAACAGGAGAUA 75.8% 5333 GGCUUCGCCGAGAUCAGAG 73.4%
5280 AGGAGAUAAGAACUUUCUC 75.8% 5334 GCAUCAGAAUGGACCAGGC 73.3%
5281 GAACAGGAGAUAAGAACUU 75.8% 5335 GCUUCGCGAUACAUAACUG 73.3%
5282 CAGGAGAUAAGAACUUUCU 75.8% 5336 CACUGUGUCAAGUUUCCAG 73.3%
5283 ACAGGAGAUAAGAACUUUC 75.7% 5337 ACACUGUGUCAAGUUUCCA 73.3%
5284 AACAGGAGAUAAGAACUUU 75.7% 5338 AACACUGUGUCAAGUUUCC 73.3%
5285 GUGGAACAGGAGAUAAGAA 75.6% 5339 CUUCGCGAUACAUAACUGA 73.3%
5286 UGGAACAGGAGAUAAGAAC 75.6% 5340 UGGACCAGGCAAUCAUGGA 73.2%
5287 GGAACAGGAGAUAAGAACU 75.6% 5341 CGGAAAAUGGCGAGAACAG 73.2%
5288 GGAGAAGCAGUAAUGAGAA 75.6% 5342 AAUGGCGAGAACAGCUAGG 73.2%
5289 GUCCCUAAGGGGAAGAGGC 75.4% 5343 CCUGCUUCGCGAUACAUAA 73.2%
5290 ACUUACUCCAAAACAGAAA 75.4% 5344 UGCAUCAGAAUGGACCAGG 73.2%
5291 GAGAAGCAGUAAUGAGAAU 75.3% 5345 UGCUUCGCGAUACAUAACU 73.2%
5346 CUGCUUCGCGAUACAUAAC 73.2% 5400 GGGACCUCCACUUACUCCA 71.3%
5347 UGGCGAGAAUAGCUAGGUC 73.1% 5401 GGGGGACCUCCACUUACUC 71.3%
5348 ACCUGCUUCGCGAUACAUA 73.1% 5402 AAAACAUCAUGUUGAAAGC 71.3%
5349 AUGGCGAGAACAGCUAGGU 73.1% 5403 AGUCUCUUAAAUUCUACAG 71.2%
5350 AAAUGGCGAGAACAGCUAG 73.1% 5404 AAAUCUACAGAGAUUCGCU 71.2%
5351 UAUUGAGGAAUUGUCAAGA 73.0% 5405 UGGAGAAAAACAUCAUGUU 71.2%
5352 AUGGACCAGGCAAUCAUGG 73.0% 5406 AAAAUCUACAGAGAUUCGC 71.2%
5353 UCAGAAUGGAACAGGCAAU 72.9% 5407 GUCUCUAAAAUUCUACAGA 71.2%
5354 GCGAGAACAGCUAGGUCAA 72.8% 5408 AAAAACAUCAUGUUGAAAG 71.2%
5355 GAGAACAGCUAGGUCAAAA 72.8% 5409 GGACCAGGCAAUCAUGGAG 71.2%
5356 CGAGAACAGCCAGGUCAAA 72.8% 5410 CAUGGAGAAAAACAUCAUG 71.2%
5357 GGCGAGAACAGCUAGGUCA 72.8% 5411 UCUAAAAAUCUACAGAGAU 71.1%
5358 AAUGGACCAGGCAAUCAUG 72.7% 5412 ACCAGGCAAUCAUGGAGAA 71.1%
5359 AAGCAGCCACCCAUGUUGG 72.7% 5413 CUCUAAAAAUCUACAGAGA 71.1%
5360 GAAUGGACCAGGCAAUCAU 72.6% 5414 CGAGUCUCUAAAAAUCUAC 71.1%
5361 UCAAGAAACUGGUUCAUGC 72.6% 5415 CUGUUUGAAGUGGAACAGG 71.1%
5362 GCAGCCACCCAUGUUGGAA 72.6% 5416 AGAAAAACAUCAUGUUGAA 71.1%
5363 AGCAGCCACCCAUGUUGGA 72.6% 5417 CUAAAAAUCUACAGAGAUU 71.1%
5364 CAAGAAACUGGUUCAUGCU 72.6% 5418 GAGAAAAACAUCAUGUUGA 71.1%
5365 GACCUCCACUUACUCCAAA 72.5% 5419 UGAGGAAUUGUCAAGAAAC 71.1%
5366 AACUGGUUCAUGCUAAUGC 72.5% 5420 GAAAAACAUCAUGUUGAAA 71.1%
5367 AGAAUGGACCAGGCAAUCA 72.5% 5421 AUGGAGAAAAACAUCAUGU 71.1%
5368 CACUUACUCCAAAACAGAA 72.5% 5422 UGUUUGAAGUGGAACAGGA 71.1%
5369 UCCACUUACUCCAAAACAG 72.4% 5423 UUCGAGUCUCUAAAAAUCU 71.1%
5370 CAGAAUGGACCAGGCAAUC 72.4% 5424 UCGAGUCUCUAAAAAUCUA 71.1%
5371 CCACUUACUCCAAAACAGA 72.3% 5425 UUGAGGAAUUGUCAAGAAA 71.1%
5372 GAAACUGGUUCAUGCUAAU 72.3% 5426 GGAAUUGUCAAGAAACUGG 71.1%
5373 AGAAACUGGUUCAUGCUAA 72.3% 5427 GUUCGAGUCUCUAAAAAUC 71.1%
5374 AAACUGGUUCAUGCUAAUG 72.3% 5428 GACCAGGCAAUCAUGGAGA 71.1%
5375 CUCCACUUACUCCAAAACA 72.3% 5429 AGGAAUUGUCAAGAAACUG 71.1%
5376 CAUGACUAUUGAGGAAUUG 72.2% 5430 GAGUCUCUAAAAAUCUACA 71.1%
5377 AAGAAACUGGUUCAUGCUA 72.2% 5431 UCUCUAAAAAUCUACAGAG 71.1%
5378 CAGGUAGAUUGCUUUUUUU 72.1% 5432 GGAGAAAAACAUCAUGUUG 71.1%
5379 CCUCCACUUACUCCAAAAC 72.1% 5433 GAGGAAUUGUCAAGAAACU 71.1%
5380 ACCUCCACUUACUCCAAAA 72.1% 5434 AAUUGUCAAGAAACUGGUU 71.0%
5381 AGGUAGAUUGCUUUCUUUG 72.1% 5435 CAAAGACAUAAUGGAUUCC 71.0%
5382 GGUAGAUUGCUUUCUUUGG 72.1% 5436 GAAUUGUCAAGAAACUGGU 71.0%
5383 UAGAUUGCUUUCUUUGGCA 72.0% 5437 UGUCAAGAAACUGGUUCAU 71.0%
5384 GUAGAUUGCUUUCUUUGGC 72.0% 5438 UGAGAAUGGGGGACCUCCA 71.0%
5385 CAACACUGUGUCAACUUUC 71.9% 5439 AUGAGAAUGGGGGACCUCC 71.0%
5386 AGAUUGCUUUCUUUGGCAU 71.9% 5440 UGCUGUUUGAAGUGGAACA 71.0%
5387 AACAGCUAGGUCAAAAGUU 71.8% 5441 GUCAAGAAACUGGUUCAUG 71.0%
5388 AAUCUACAGAGAUUCGCUU 71.8% 5442 CUGCUGUUUGAAGUGGAAC 71.0%
5389 GAACAGCUAGGUCAAAAGU 71.8% 5443 UUCCAGGUAGAUUGCUUUC 70.9%
5390 AUCUACAGAGAUUCGCUUG 71.7% 5444 GGACCUCCACUUACUCCAA 70.9%
5391 AGUUUCCAGGUAGAUUGCU 71.6% 5445 CCAGGUUAGAUUGCUUCUU 70.9%
5392 GUUUCCAGGUAGAUUGCUU 71.6% 5446 AUUGAGGAAUUGUCAAGAA 70.9%
5393 AAGUUUCCAGGUAGAUUGC 71.5% 5447 AUUGUCAAGAAACUGGUUC 70.9%
5394 AGAACAGCUAGGUCAAAAG 71.5% 5448 UUGUCAAGAAACUGGUUCA 70.9%
5395 UGGGGGACCUCCACUUACU 71.5% 5449 UAAAAAUCUACAGAGAUUC 70.9%
5396 AUGGGGGAGCUCCACUUAC 71.4% 5450 UCCAGGUAGAUUGCUUUCU 70.9%
5397 AGUUCGAGUCUCUAAAAAU 71.3% 5451 AGUUUUGAGCAAAUAACAU 70.8%
5398 GGGGACCUCCACUUACUCC 71.3% 5452 GCUGUUUGAAGUGGAACAG 70.8%
5399 CAGUUCGAGUCUCUAAAAA 71.3% 5453 CAGGCAAUCAUGGAGAAAA 70.7%
5454 AAUAGUUUUGAGCAAAUAA 70.7% 5469 GAAUGGGGGACCUCCACUU 70.2%
5455 UUUCCAGGUUAGAUUCUUU 70.7% 5470 CAAUCAUGGAGAAAAACAU 70.1%
5456 AGAAUGGGGGACCUCCACU 70.7% 5471 AAUCAUGGAGAAAAACAUC 70.1%
5457 AAACAUCAUGUUGAAAGCG 70.7% 5472 GGCAAUCAUGGAGAAAAAC 70.1%
5458 GAGAAUGGGGGACCUCCAC 70.7% 5473 GCAAUCAUGGAGAAAAACA 70.1%
5459 GUUUUGAGCAAAUAACAUU 70.7% 5474 UUUGCAUCAGAAUGGACCA 70.1%
5460 AAAAAUCUACAGAGAUUCG 70.6% 5475 UUGCAUCAGAAUGGACCAG 70.1%
5461 UAGUAUUACUAAGGGCUUU 70.6% 5476 CUCUCGGUCUAGACAUCAA 70.1%
5462 AUAGUUUUGAGCAAAUAAC 70.6% 5477 UCUCGGUCUAGACAUCAAA 70.1%
5463 GUAUUACUAAGGGCUUUCA 70.5% 5478 AAUGGGGGACCUCCACUUA 70.1%
5464 UAGUUUUGAGCAAAUAACA 70.5% 5479 AUCAUGGAGAAAAACAUCA 70.1%
5465 AGUAUUACUAAGGGCUUUC 70.5% 5480 CUUUGCAUCAGAAUUGGAC 70.0%
5466 CCAGGCAAUCAUGGAGAAA 70A% 5481 CCGAGAUCAGAGGUCCCUA 70.0%
5467 AGGCAAUCAUGGAGAAAAA 70.2% 5482 GUUUGAAGUGGAACAGGAG 70.0%
5468 ACUCUCGGUCUAGACAUCA 70.2% 5483 CGAGAUCAGAGGUCCCUAA 70.0%
我们的研究表明,RNAi机制可耐受靶RNA与siRNA双链体反义引导序列之间的小量错配。因此,靶向流感中高度保守位点的单个siRNA双链体对相对于高度保守位点仅具有一个或几个错配的小变体种类通常仍将有活性。我们已经使用此观察结果来扩展可被所给siRNA双链体靶向的甲型流感病毒序列变体的列表。
表3中从试验筛选研究鉴别的前九个siRNA已经从表20中提取出。
表3:从试验筛选研究鉴别的前九个siRNA位点,显示了在表20-1至20-6所界定甲型流感的保守和小变体19-mer序列。
Seq Ref
片段 匹配序列 总数%
ID ID
7 7 PB2 AGACAGCGACCAAAAGAAU 99.1%
5503 7 AGACAGCGACCAAAAGgAU 0.3%
5504 7 AGACAGCGACCAAAgGAAU 0.1%
5505 7 AGACAGCGACCAAAAGAuU 0.1%
5506 7 AGACgaCGAUCAAAAGAAU 0.1%
17 17 PB2 ACUGACAGCCAGACAGCGA 99.0%
5543 17 ACUGACAGuCAGACAGCGA 0.2%
5544 17 ACUGAUAGCCAGACAGCGA 0.3%
5545 17 ACCGACAGCCAGACAGCGA 0.2%
5546 17 ACUGACAGCCAGACgaCGA 0.1%
48 48 PB2 CGGGACUCUAGCAUACUUA 98.0%
5726 48 CGGGACUCUAGCAUgCUUA 0.1%
5727 48 CGGGACUuUAGCAUACUUA 0.2%
5728 48 aGGGACUCUAGCAUACUUA 0.1%
5729 48 CGaGACUCUAGCAUACUUA 0.4%
5730 48 CGGaACUCUAGCAUACUUA 0.6%
5731 48 CGGGACUaUAGCAUACUUA 0.1%
5732 48 CGGGACUCcAGCAUACUUA 0.3%
5733 48 CGGGACUCUAaCAUACUUA 0.1%
1187 1187 PBI GAUUCUGUUCCACCAUGAA 90.9%
6265 1187 GAUCUGUUuCACCAUUGAA 0.7%
6266 1187 aAUCUGUUCCACCAUUGAA 0.1%
6267 1187 GAcCUGUUCCACCUUUGAA 6.9%
6268 1187 GAUCUGcUCCACCAUUGAA 0.2%
6269 1187 GAUGUGUUaCACCAUUGAA 0.1%
6270 1187 GAUCUGUUCCACCAUUaAA 0.1%
6271 1187 GAcCUGUUCuACCAUUGAA 0.1%
6272 1187 GAcCUGcUCCACCAUUGAA 0.3%
1206 1206 PB1 AUGAAGAUCUGUUCCACCA 88.6%
6467 1206 AUGAAGAUCUGUUUCACCA 0.7%
6468 1206 AUGAgGAUCUGUUCCACCA 0.2%
6469 1206 AcGAAGAUCUGUUCCACCA 0.1%
6470 1206 AUGAAaAUCUGUUCCACCA 0.1%
6471 1206 AUGAAGAcCUGUUCCACCA 6.8%
6472 1206 AUGAAGAUCUGcUCCACCA 0.2%
6473 1206 AUGAAGAUCUGUUaCACCA 0.1%
6474 1206 cUGAGGAUCUGUUCCACCA 0.1%
6475 1206 uUGAAGAUCUGUUCCACCA 2.0%
6476 1206 AUGAAGAcCUGUUCuACCA 0.1%
6477 1206 AUaAAGAcCUGUUCCACCA 0.1%
6478 1206 AUGAAGAcCUGcUCCACCA 0.2%
2393 2393 PA UUGAGGAGUGCCUGAUUAA 98.7%
6888 2393 UUGAGGAGUGCCUGgUUAA 0.1%
6889 2393 UUGAGGAaUGCCUGAUUAA 1.0%
6890 2393 UUGAGGAGUGCCUaAUUAA 0.2%
2394 2394 PA GCAAUUGAGGAGUGCCUGA 98.6%
6891 2394 GCAAUUGAGGAGUGCCUGg 0.1%
6892 2394 GCAgUUGAGGAGUGCCUGA 0.1%
6893 2394 GCAAUUGAGGAaUUCCUGA 1.0%
6894 2394 GCAAUUGAGGAGUGCCUaA 0.2%
3560 3560 NP GAUCUUAUUUCUUCGGAGA 96.0%
8041 3560 GAUCCUAUUUCUUCGGgGA 1.7%
8042 3560 GAUCUUAUUUCUUuGGAGA 0.2%
8043 3560 GgUCUUAUUUCUUCGGAGA 0.9%
8044 3560 GuUCUUAUUUCUUCGGAGA 1.1%
3561 3561 NP GGAUCUUAUUUCUUCGGAG 96.0%
8045 3561 GGAUCUUAUUUCUUCGGgG 1.7%
8046 3561 GGAUCUUAUUUCDUuGGAG 0.2%
8047 3561 GGgUCUUAUUUCUUCGGAG 0.9%
8048 3561 GGuUCUUAUUUCUUCGGAG 1.1%
使用Madin-Darby犬肾细胞(MDCK)。对于电穿孔,将细胞保持在无血清的RPMI 1640培养基。在感染培养基中进行病毒感染。使用甲型流感病毒/PR/8/34(PR8)和A/WSN/33(WSN),H1N1亚型。测试的有义链和反义链列于表4。
表4 siRNA序列
名称 | siRNA序列 (5’-3’) | |
PB2-2210/2230(有义) | ggagacgugguguugguaadTdT | (SEQ ID NO:10710) |
PB2-2210/2230(反义) | uuaccaacaccacgucuccdTdT | (SEQ ID NO:10711) |
PB2-2240/2260(有义) | cgggacucuagcauacuuadTdT | (SEQ ID NO:10712) |
PB2-2240/2260(反义) | uaaguaugcuagagucccgdTdT | (SEQ ID NO:10713) |
PB1-6/26(有义) | gcaggcaaaccauuugaaudTdT | (SEQ ID NO:10714) |
PB1-6/26(反义) | auucaaaugguuugccugcdTdT | (SEQ ID NO:10715) |
PB1-129/149(有义) | caggauacaccauggauacdTdT | (SEQ ID NO:10716) |
PB1-129/149(反义) | guauccaugguguauccugdTdT | (SEQ ID NO:10717) |
PB1-2257/2277(有义) | gaucuguuccaccauugaadTdT | (SEQ ID NO:10718) |
PB1-2257/2277(反义) | uucaaugguggaacagaucdTdT | (SEQ ID NO:10719) |
PA-44/64(有义) | ugcuucaauccgaugauugdTdT | (SEQ ID NO:10720) |
PA-44/64(反义) | caaucaucggauugaagcadTdT | (SEQ ID NO:10721) |
PA-739/759(有义) | cggcuacauugagggcaagdTdT | (SEQ ID NO:10722) |
PA-739/759(反义) | cuugcccucaauguagccgdTdT | (SEQ ID NO:10723) |
PA-2087/2107(G)(有义) | gcaauugaggagugccugadTdT | (SEQ ID NO:10724) |
PA-2087/2107(G)(反义) | ucaggcacuccucaauugcdTdT | (SEQ ID NO:10725) |
PA-2110/2130(有义) | ugaucccuggguuuugcuudTdT | (SEQ ID NO:10726) |
PA-2110/2130(反义) | aagcaaaacccagggaucadTdT | (SEQ ID NO:10727) |
PA-2131/2151(有义) | ugcuucuugguugaacuccdTdT | (SEQ ID NO:10728) |
PA-2131/2151(反义) | ggaguugaaccaagaagcadTdT | (SEQ ID NO:10729) |
NP-231/251(有义) | uagagagaauggugcucucdTdT | (SEQ ID NO:10730) |
NP-231/251(反义) | gagagcaccauucucucuadTdT | (SEQ ID NO:10731) |
NP-390/410(有义) | uaaggcgaaucuggcgccadTdT | (SEQ ID NO:10732) |
NP-390/410(反义) | uggcgccagauucgccuuadTdT | (SEQ ID NO:10733) |
NP-1496/1516(有义) | ggaucuuauuucuucggagdTdT | (SEQ ID NO:10734) |
NP-1496/1516(反义) | cuccgaagaaauaagauccdTdT | (SEQ ID NO:10735) |
NP-1496/1516a(有义) | ggaucuuauuucaucggagadTdT | (SEQ ID NO:10736) |
NP-1496/1516a (反义) | ucAuccgaagaaauaagauccdTdT | (SEQ ID NO:10737) |
M-37/57(有义) | ccgaggucgaaacguacgudTdT | (SEQ ID NO:10738) |
M-37/57(反义) | acguacguuucgaccucggdTdT | (SEQ ID NO:10739) |
M-480/500(有义) | cagauugcugacucccagcdTdT | (SEQ ID NO:10740) |
M-480/500(反义) | gcugggagucagcaaucugdTdT | (SEQ ID NO:10741) |
M-598/618(有义) | uggcuggaucgagugagcadTdT | (SEQ ID NO:10742) |
M-598/618(反义) | uggucacucgauccagccadTdT | (SEQ ID NO:10743) |
M-934/954(有义) | gaauaucgaaaggaacagcdTdT | (SEQ ID NO:10744) |
M-934/954(反义) | gcuguuccuuucgauauucdTdT | (SEQ ID NO:10745) |
NS-128/148(有义) | cggcuucgccgagaucagadAdT | (SEQ ID NO:10746) |
NS-128/118(反义) | ucugaucucggcgaagccgdAdT | (SEQ ID NO:10747) |
NS-562/582(R)(有义) | guccuccgaugaggacuccdTdT | (SEQ ID NO:10748) |
NS-562/582(R)(反义) | ggaguccucaucggaggacdTdT | (SEQ ID NO:10749) |
NS-589/609(有义) | ugauaacacaguucgagucdTdT | (SEQ ID NO:10750) |
NS-589/609(反义) | gacucgaacuguguuaucadTdT | (SEQ ID NO:10751) |
所有siRNA都由Dharmacon Research (Lafayette,CO)使用2’ACE保护化学法合成并经由电穿孔转染入细胞。电穿孔6至8小时后,洗去含有血清的培养基,以合适的多重感染的PR8或WSN病毒接种于细胞。以1,000PFU(每1,000细胞一个病毒;MOI=0.001)或10,000 PFU(每100细胞一个病毒;MOI=0.01)的病毒感染细胞。在室温培养1小时后,带有4μg/ml胰蛋白酶的2ml感染培养基加至每孔,培养细胞,并在所指示的时间从受感染培养物收集上清液,经由鸡红细胞血凝而确定病毒滴度。
感染后24、36、48和60小时收集上清液。使用如Knipe DM,HoWley,PM,Fundamental Virology,第4版,p.34-35所述的标准血凝素试验来测量病毒滴度。在V-底的96孔板中进行血凝素试验。每个样品的系列2倍稀释物在冰上培养1小时,伴有等量体积的0.5%鸡红细胞悬浮液(CharlesRiver Laboratories)。含有粘附、均匀层红细胞的孔记录为阳性。对噬菌斑检测,每个样品的系列10倍稀释物对病毒滴定,如本领域已知的如Fundamental Virology,第4版,p.32所述的。
为了研究使用siRNA抑制流感病毒复制的可行性,靶向各种甲型流感病毒RNA。尤其是,使用易于感染并广泛用于研究流感病毒的MDCK细胞系。
每种siRNA分别通过电穿孔引入MDCK细胞群体。使用靶向于GFP(有义:5’-GGCUACGUCCAGGAGCGCAUU-3’(SEQ ID NO:10752);反义:5’-UGCGCUCCUGGACGUAGCCUU-3’(SEQ ID NO:10753))的siRNA作为对照。该siRNA是指GFP-949。在随后的实验中(在以下实施例中描述),在两条链的3’端的UU突出端被dTdT代替而不影响效果。进行模拟电穿孔作为对照。电穿孔8小时后,以甲型流感病毒PR8或WSN以0.1或0.01的MOI感染细胞,并分析在各时间点(24、36、48、60小时)的病毒产生,此后使用标准血凝素检测。使用标准方法以流式细胞计检测GFP表达。
图11A和11B比较了通过测量HA滴度而确定单独siRNA抑制甲型流感病毒毒株A/Puerto Rico/8/34(H1N1)(图11A)或甲型流感病毒毒株A/WSN/33(H1N1)(图11B)能力的实验结果。因此高HA滴度表示缺少抑制而低HA滴度表示有效抑制。以0.01的MOI感染MDCK细胞。对这些实验,检测了靶向PB1片段(PB1-2257/2277)的一种siRNA,靶向PB2片段(PB2-2240/2260)的一种siRNA,靶向PA片段(PA-2087/2107(G))的一种siRNA,靶向NP基因组和转录子(NP-231/251、NP-390/410、NP-1496/1516)的三种不同siRNA。注意图11A和11B的图例只列出了siRNA的5’核苷酸。
图11A和11B中的符号如下:填充方块代表未接受siRNA的对照细胞。空白方块代表接受GFP对照siRNA的细胞。填充圆圈代表接受siRNAPB1-2257/2277的细胞。空白圆圈代表接受siRNA PB2-2240/2260的细胞。空白三角代表接受siRNA PA-2087/2107(G)的细胞。X符号代表接受siRNANP-231/251的细胞。+代表接受siRNA NP-390/410的细胞。填充三角代表接受siRNA NP-1496/1516的细胞。注意到图中有些符号有时是重叠的。例如,图11B中空白三角和填充三角是重合的。
不存在siRNA(模拟TF)或存在对照(GFP)siRNA时,病毒滴度随时间增加,在感染后约48-60小时到达峰值。相反,存在任何siRNA时,在60小时病毒滴度显著降低。例如,在毒株WSN中HA滴度(反映病毒水平)当siRNA PB2-2240或NP-231存在时是对照中的大约一半。尤其是,在两种毒株中当存在siRNA NP-1496时病毒水平低于检测限(10,000PFU/ml)。这表示在PR8毒株中超过60倍的减少和WSN毒株中超过120倍的减少。当WSN毒株中存在siRNAPA-2087(G)时,病毒水平也低于检测限(10,000 PFU/ml),并且在毒株PR8中尤其低。甚至从早期测量时间点,siRNA对病毒繁殖的抑制也很明显。在感染后72小时的时间点已经观察到有效抑制,包括病毒繁殖抑制到不可检测的水平(如由HA滴度确定的)。
表5概括了在MDCK细胞中60小时时siRNA抑制的结果,以抑制倍数的形式表示。因此较低值表示缺少抑制而较高值表示有效抑制。siRNA在病毒基因里的位置由基因名称后的数字表示。如别处所示,数字代表siRNA在基因中的起始核苷酸。例如,NP-1496指对NP特异性的siRNA,第一个核苷酸开始于NP序列的核苷酸1496。通过将模拟转染的血凝素单位除以以所指siRNA转染所得血凝素单位而计算所示的值(倍数-抑制);值1表示没有抑制。
在MDCK细胞系系统中检测了总共20种靶向流感病毒基因组6个片段(PB2、PBl、PA、NP、M和NS)的siRNA(表5)。约15%的测试siRNA(PBl-2257、PA-2087G和NP-1496)展示了强效,在大多数MOI=0.001的情况抑制病毒繁殖超过100倍,在MOI=0.01的情况抑制病毒繁殖16至64倍,不论使用的是PR8病毒还是WSN病毒。尤其是,当使用siRNANP-1496或PA-2087时,抑制是如此显著以至于培养物上清液没有可检测的血凝素活性。这些有效的siRNA靶向3种不同病毒基因片段:PB1和PA,其涉及在RNA转录酶复合体中,以及NP,其是单链RNA结合核蛋白。与其它系统中的发现一致,由这些siRNA靶向的序列都位于相对靠近编码区的3-引物端(图12)。
大约40%的siRNA显著地抑制病毒繁殖,但抑制的程度根据一些参数而变化。大约15%的siRNA有效抑制病毒繁殖而不论使用的是PR8病毒还是WSN病毒。然而,在一些siRNA的情况,抑制的程度部分取决于使用的是PR8病毒还是WSN病毒。一些siRNA仅在早期时间点(感染后24至36小时)或仅在较低感染剂量(MOI=0.001)显著抑制病毒繁殖,如PB2-2240、PBl-129、NP-23l和M-37。这些siRNA靶向不同的病毒基因片段,相应的序列位于靠近编码区的3-引物端或5-引物端(图12)。图5A和5B代表检测结果。大约45%的siRNA对病毒滴度没有可辨别的效力,说明它们在MDCK细胞中不能有效干扰流感病毒繁殖。尤其是,这四种靶向NS基因片段的siRNA都没有显示任何抑制效力。
为了更准确地评估病毒滴度,以病毒感染的细胞获得的培养物上清液进行噬菌斑检测(60小时),该细胞经过模拟转染或以NP-1496转染。在模拟上清液中检测到约6×105pfu/ml,而在未稀释的NP-1496上清液中未检测到噬菌斑(图11C)。由于噬菌斑检测的检测限是约20pfu(噬菌斑形成单位)/ml,NP-1496对病毒繁殖的抑制是至少约30,000倍。即使在0.1的MOI,NP-1496抑制病毒繁殖约200倍。
为了确定siRNA的效价,将分级量的NP-1496转染入MDCK细胞,随后以PR8病毒感染。由血凝素检测来测量培养物上清液中的病毒滴度。随着siRNA的量减少,培养物上清液中的病毒滴度增加,如图11D所示。然而,即使只有25pmol siRNA用于转染,与模拟转染相比检测到约4倍的病毒繁殖抑制,说明NP-1496 siRNA用于抑制流感病毒繁殖的效力。
对于治疗,期望的是siRNA能够有效抑制现有的病毒感染。在典型流感病毒感染中,在感染后约4小时开始释放新的病毒粒子。为了确定siRNA是否能减少或消除现有感染情况下新释放病毒的感染,以PR8病毒感染MDCK细胞,然后以NP-1496 siRNA转染。模拟转染后病毒滴度随时间平稳地增加,而在NP-1496转染细胞中病毒滴度仅略微增加。因此病毒感染后给药siRNA是有效的。
这些结果共同表示:(i)一些siRNA可有效抑制流感病毒繁殖;(ii)流感病毒繁殖可由对不同病毒基因特异性的siRNA抑制,所述基因包括那些编码NP、PA、PB1蛋白的基因;和(iii)siRNA抑制除了发生在siRNA给药同时或给药之后受感染的细胞中以外,还发生在预先感染的细胞中。
实施例2:靶向病毒RNA聚合酶或核蛋白的siRNA抑制鸡胚胎中甲型流感病毒繁殖
材料和方法
siRNA-oligofectamine复合体形成和鸡胚胎接种。如上所述的制备siRNA。在标准条件下保持鸡卵。30μl的Oligofectamine(产品号:来自Life Technologies(现在为Invitrogen)的12252011)与30μl的Opti-MEMI(Gibco)混合,并在室温下保持5分钟。2.5nmol(10μl)siRNA与30μl的Opti-MEMI混合并加至稀释的oligofectamine。siRNA与oligofectamine在室温保持30分钟。l0天的鸡卵以siRNA-oligofectamine复合体和100μl PR8病毒(5000pfu/ml)接种。鸡卵在37℃培养所指的时间并收集尿囊液。由如上所述的HA检测测试尿囊液中的病毒滴度。
结果
为了证实MDCK细胞中的结果,还检测了siRNA在受精鸡卵中抑制病毒繁殖的能力。由于电穿孔不能用于卵,故使用了基于脂类的药剂Oligofectamine,其已经显示为促进胞内DNA寡核苷酸以及体外siRNA的摄取(25)。简言之,如图13A示意性地所示,将PR8病毒(500 pfu)或病毒加上siRNA-oligofectamine复合体注射到10天龄鸡卵的尿囊中。17小时后收集尿囊液以通过血凝素检测而测量病毒滴度。如图13B所示,当病毒(存在Oligofectamine)单独注射时,易于检测到高病毒滴度。GFP-949的共注射不能显著影响病毒滴度。(当不存在Oligofectamine时没有观察到病毒滴度的显著减少。)
对流感病毒特异性的siRNA的注射显示了与MDCK细胞中观察到的一致结果:在MDCK细胞中抑制流感病毒繁殖的相同的siRNA(NP-1496、PA2087和PBl-2257)也在鸡卵中抑制病毒繁殖,而在MDCK细胞中较无效的siRNA(NP-231、M-37和PBl-129)在受精鸡卵中也无效。因此,siRNA在受精鸡卵中也有效干扰流感病毒繁殖。
实施例3:siRNA在mRNA水平抑制流感病毒繁殖
材料和方法
如上所述地进行siRNA制备。
提取RNA、反转录和实时PCR。1×107MDCK细胞以2.5nmol NP-1496电穿孔或模拟电穿孔(无siRNA)。8小时后,以MOI=0.1接种甲型流感病毒PR8病毒。感染后1、2、和3小时,移去上清液,以Trizol试剂(Gibco)裂解细胞。根据制造商的说明纯化RNA。在37。C进行反转录(RT)1小时,使用200ng总RNA、特异性引物(见以下),和根据制造商说明的20μl反应混合物中的Omniscript Reverse transcriptase试剂盒(Qiagen)。对mRNA、NP vRNA、NP cRNA、NS vRNA、或NS cRNA的特异性引物如下:
mRNA,dT18=5’-TTTTTTTTTTTTTTTTTTTT-3’(SEQ ID NO:10754)
NNp vRNA,NP-367:5’-CTCGTCGCTTATGACAAAGAAG-3’(SEQ ID NO:10755).
NP cRNA,NP-1565R:
5’-ATATCGTCTCGTATTAGTAGAAACAAGGGTATTTTT-3’(SEQ ID NO:10756).
NS vRNA,NS-527:5’-CAGGACATACTGATGAGGATG-3’(SEQ ID NO:10757).
NS cRNA,NS-890R:
5’-ATATCGTCTCGTATTAGTAGAAACAA-3’(SEQ ID NO:10758).
1μl RT反应混合物(即,进行反转录获得的样品)和序列特异性引物用于实时PCR,使用包括SYBR Green I双链DNA结合染料的SYBR GreenPCR master mix(AB Applied Biosystems)。在ABI PRISM 7000序列检测系统(AB Applied Biosystem)中进行PCR循环,并以ABI PRISM 7000 SDS软件(AB Applied Biosystems)分析。PCR反应如下进行:50℃、2分钟,95℃、10分钟,然后95℃、15秒,和60℃、1分钟,50个循环。在0.2荧光单位读数分析循环次数。所有反应都双份进行。丢弃双份之间差异超过1.0的循环次数。然后对双份循环次数平均,从它们减去β-肌动蛋白的循环次数以对值标准化。
PCR引物如下。
对NP RNA:
NP-367:5’-CTCGTCGCTTATGACAAAGAAG-3’(SEQ ID NO:10755).
NP-46OR:5’-AGATCATCATGTGAGTCAGAC-3’(SEQ ID NO:10759).
对NS RNA:
NS-527:5’-CAGGACATACTGATGAGGATG-3’(SEQ ID NO:10757),
NS-617R:5’-GTTTCAGAGACTCGAAACTGTG-3’(SEQ ID NO:10760).
结果
如上所述,在流感病毒复制期间,转录vRNA以产生作为更多vRNA合成模板的cRNA和作为蛋白合成模板的mRNA(1)。尽管已知RNAi以序列特异性方式(16-18)靶向于mRNA的降解,但可能vRNA和cRNA也靶向于siRNA,因为甲型流感病毒的vRNA对核酶敏感(1)。为了研究siRNA对各种RNA降解的效力,使用序列特异性引物反转录,然后实时PCR以对vRNA、cRNA和mRNA的水平定量。图1 5显示了流感病毒vRNA、mRNA和cRNA之间的关系。如图15所示,cRNA与vRNA精确互补,但mRNA在3’端含有polyA序列,开始于互补于从vRNA片段5,端下游的15-22核苷酸的位点。因此与vRNA和cRNA相比,mRNA在3,端缺少15至22核苷酸。为了区别这三种病毒RNA,在第一反转录反应中使用针对vRNA、cRNA和mRNA的特异性引物。对mRNA,使用poly dTl8作为引物。对cRNA,使用互补于mRNA中缺少的3’端RNA的引物。对vRNA,引物可沿着RNA的任何一处,只要它互补于vRNA且不太靠近5,端。以实时PCR扩增从仅一种RNA转录得到的cDNA。
流感病毒感染后,新的病毒粒子被包装并在约4小时时释放。为了确定siRNA对第一波mRNA和cRNA转录的影响,在感染后早期分离RNA。简言之,将NP-1496电穿孔入MDCK细胞。也进行模拟电穿孔(无siRNA)。6至8小时后,以MOI=0.1接种PR8病毒。感染后1、2、和3小时,裂解细胞,分离RNA。使用对各种RNA的引物反转录而检测mRNA、vRNA和cRNA的水平,然后进行实时PCR。
图16显示了在病毒感染细胞后各时间病毒NP和NS RNA的量,这些细胞感染前6-8小时被模拟转染或以siRNANP-1496转染。如图16所示,感染1小时后,有或无NP siRNA转染的样品之间NP mRNA的量没有显著差别。转染后2小时,模拟转染组中NP mRNA增加38倍,而siRNA转染的细胞中NP mRNA的水平没有增加(或甚至轻微降低)。感染3小时后,模拟转染中mRNA水平持续增加,而接受siRNA处理的细胞中观察到NP mRNA量的持续减少。NP vRNA和cRNA表现出类似的模式,除了模拟转染中vRNA和cRNA的量增加只在感染后3小时显著。尽管不希望受任何理论束缚,这很可能是因为流感病毒的生命周期,其中mRNA转录的初次循环发生在cRNA和vRNA合成之前。
这些结果表示,与血凝素检测或噬菌斑检测测量完整活病毒的结果一致,NP siRNA处理也显著减少所有种类NP RNA的量。尽管已知siRNA主要介导mRNA的降解,此试验的数据也不排除siRNA介导NP cRNA和VRNA降解的可能性,尽管以下的结果表示由于NP mRNA减少导致NP蛋白水平减少,从而导致NP cRNA和/或vRNA稳定性降低。
实施例4:RNA干扰靶的鉴定
材料和方法
如上所述地进行未修饰siRNA的siRNA制备。修饰的siRNA也由Dharmacon合成,其中有义链或反义链或同时两条链的每个核苷酸残基的2’-羟基以2’-O-甲基取代。如对未修饰的寡核苷酸那样,修饰的寡核苷酸被脱保护并退火至互补链。凝胶电泳分析siRNA双链体的双链体形成完成度。
细胞培养,siRNA转染,和病毒感染。这些基本上如上所述。简言之,对关于修饰的NP-1496 siRNA的试验,首先以从野生型链(wt)和修饰链(m)生成的NP-1496 siRNA(2.5nmol)转染MDCK细胞,8小时后以0.1的MOI的PR8病毒感染。感染24小时后检测培养物上清液中的病毒滴度。对关于M-37 siRNA的试验,以M-37 siRNA(2.5nmo1)转染MDCK细胞,以0.01的MOI的PR8病毒感染,感染1、2、3小时后收集RNA。表2列出了M-37的有义和反义序列。
RNA提取,反转录和实时PCR基本上如上所述。用于反转录的对mRNA、M-特异性vRNA、和M-特异性cRNA的特异引物如下:
mRNA,dT18=5’-TTTTTTTTTTTTTTTTTTT-3’(SEQ ID NO:10754)
M vRNA:5’-CGCTCAGACATGAGAACAGAATGG-3’(SEQ ID NO:10761)
McRNA:5’-ATATCGTCTCGTATTTAGTAGAAACAAGGTAGTTTTT-3’(SEQ IDNO:10762).
用于M RNA的PCR引物如下:
M向前:5’-CGCTCAGACATGAGAACAGAATGG-3’(SEQ ID NO:10761)
M反向:5’-TAACTAGCCTGACTAGCAACCTC-3’(SEQ ID NO:10763)
结果
为了研究siRNA除了干扰mRNA以外还干扰vRNA和/或cRNA的可能性,合成了有义链(S或+)或反义链(AS或-)被修饰的NP-1496siRNA。该修饰(即在每个核苷酸残基以2’-O-甲基取代2,-羟基)不影响双链体形成的碱基配对,但修饰过的RNA链不再支持RNA干扰。换言之,有义链被修饰但反义链是野生型的siRNA(mS:wtAS)将支持序列与反义链互补的RNA降解,但不支持序列与有义链互补的RNA降解。相反,有义链是野生型但反义链被修饰的siRNA(wtS:mAS)将支持序列与有义链互补的RNA降解,但不支持序列与反义链互补的RNA降解。
MDCK细胞被模拟转染或以有义链被修饰而另一条链为野生型的NP-1496 siRNA(mS:wtAS)或反义链被修饰而另一条链为野生型的NP-1496 siRNA(wtS:mAS)所转染。细胞还以两条链都修饰的NP-1496siRNA(mS:mAS)转染。然后以PR8病毒感染细胞,测量上清液中的病毒滴度。如图17A所示,经受模拟转染的培养物中检测到高的病毒滴度。如所期待的,野生型siRNA(wtS:wtAS)转染的培养物中检测到很低的病毒滴度,但两条链都被修饰的siRNA(mS:mAS)转染的培养物中检测到高病毒滴度。反义链被修饰的siRNA(wtS:mAS)转染的培养物中病毒滴度高,而有义链被修饰的siRNA(mS:wtAS)转染的培养物中病毒滴度低。尽管不希望受束缚于任何理论,发明人认为siRNA双链体需要野生型反义链(-)来抑制流感病毒繁殖表示RNAi干扰的靶是mRNA(+)或cRNA(+)或两者。
为了进一步区分这些可能,检查了siRNA对相应mRNA、vRNA、和cRNA蓄积的效力。为了追踪一组同时感染的细胞的转录,感染后1、2和3小时(在释放新的病毒粒子并再次感染之前)收集siRNA转染的MDCK细胞以分离RNA。首先是用特异性引物将病毒mRNA、vRNA、和cRNA独立地转化为cDNA。然后由实时PCR对每种cDNA的水平定量。如图17B所示,当使用M-特异性siRNAM-37时,感染后1或2小时几乎检测不到M-特异性mRNA。感染3小时后,在没有M-37时易于检测到M-特异性mRNA。在以M-37转染的细胞中,M-特异性mRNA的水平减少约50%。相反,在M-37存在时,M-特异性vRNA和cRNA的水平不受抑制。尽管不希望受任何理论束缚,这些结果表示病毒mRNA可能是siRNA介导干扰的靶。
实施例5:一些siRNA对病毒RNA蓄积的作用
材料和方法
如上所述地制备siRNA。引物对mRNA、NP vRNA、NP cRNA、NSVRNA、NS cRNA、M vRNA、或M cRNA。用于反转录的对PB1 vRNA、PBl cRNA、PB2 vRNA、PB2 cRNA、PAvRNA、或PA cRNA的特异引物如下:
PBl vRNA:5’-GTGCAGAAATCAGCCCGAATGGTTC-3’(SEQ ID NO:10764)
PB1 cRNA:5’-ATATCGTCTCGTATTAGTAGAAACAAGGCATTT-3’(SEQ ID NO:10765)
PB2 vRNA:5′-GCGAAAGGAGAGAAGGCTAATGTG-3′(SEQ ID NO:10766)
PB2 cRNA:51-ATATGGTCTCGTATTAGTAGAAACAAGGTCGTTT-3’(SEQ ID NO:10767)
PA vRNA:5’-GCTTCTTATCGTTCAGGCTCTTAGG-3’(SEQ ID NO:10768)
PA cRNA:5’-ATATCGTCTCGTATTAGTAGAAACAAGGTACTT-3,(SEQ ID NO:10769)
用于PB l、PB2、和PA RNA的PCR引物如下:
PBl向前:5’-CGGATTGATGCACGGATTGATTTC-3’(SEQ ID NO:10770)
PB1:反向5’-GACGTCTGAG-CTCTTCAATGGTGGAAC-3’(SEQ ID NO:10771)
PB2向前5′-GCGAAAGGAGAGAAGGCTAATGTG-3′(SEQ ID NO:10766)
PB2反向:51-AATCGCTGTCTTGGCTGTCAGTAAG-3′(SEQ ID NO:10772)
PA向前 5’-GCTTCTTATCGTTCAGGCTCTTAGG-3’(SEQ ID NO:10768)
PA反向:5’-CCGAG-AAGCATTAAGCAAAACCCAG-3’(SEQ ID NO:10773)
结果
为了确定NP-1496是否特异性地靶向NP基因片段的降解,或不同于NP的病毒RNA的水平是否也受影响,对NS特异性的引物用于RT和实时PCR以如上所述地测量不同NS RNA种类(mRNA、vRNA、cRNA)的量。如图18所示,NS mRNA、vRNA和cRNA显示了与NP RNA相同的模式。感染3小时后,模拟转染细胞中观察到所有NS RNA种类的显著增加,而接受NP-1496 siRNA的细胞中未观察到NS RNA水平的显著变化。该结果表示不同病毒RNA的转录和复制是同等地被调节的,至少对NPRNA是如此。同等地调节意味着一种转录子的水平直接或间接地影响另一种转录子的水平。没有暗示特定机制。当NP转录子被siRNA处理降解时,其它病毒RNA的水平也减少。
为了进一步研究NP siRNA对其它病毒RNA的效力,在以NP-1496处理的细胞中测量所有病毒基因的mRNA、vRNA和cRNA的蓄积。如图1 8A所示(上板),感染后1或2小时NP特异性mRNA低。感染3小时后,没有NP-1496的情况下易于检测到NP mRNA,而有NP-1496的情况下NP mRNA的水平保持本底水平,说明siRNA抑制特异性mRNA的蓄积。如图18A所示(中板和下板),在NP-1496存在下,NP特异性和NS特异性vRNA和cRNA被大量抑制。这些结果证实了上述结果。此外,在NP-1496处理的细胞中,M、NS、PBl、PB2、和PA基因的mRNA、vRNA和cRNA的蓄积也被抑制(图18B、18C、和18H)。而且,对PA-2087也观察到宽的抑制效应。而且,图18E、18F、和18G左侧上板、中板和下板展示了如图18A、18B、和18C同样的结果,表示NP-1496 siRNA对病毒mRNA转录和病毒vRNA和cRNA复制的抑制。图18E、18F、和18G右侧上板、中板和下板展示了以同样浓度PA-2087进行的同样试验。如分别由图18E右边的上板、中板和下板所示,感染3小时后没有PA-2087的情况下易于检测到PA、M、和NS mRNA,而PA-2087的存在抑制PA、M、和NS mRNA的转录。如分别由图18F右边的上板、中板和下板所示,感染3小时后没有PA-2087的情况下易于检测到PA、M、和NS vRNA,而PA-2087的存在抑制PA、M、和NS vRNA的蓄积。如分别由图18G右边的上板、中板和下板所示,感染3小时后没有PA-2087的情况下易于检测到PA、M、和NS cRNA,而PA-2087的存在抑制PA、M、和NS cRNA的蓄积。此外,图1 8H显示NP特异性siRNA抑制PBl-(上板)、PB2-(中板)和PA-(下板)特异性mRNA的蓄积。
尽管不希望受任何理论束缚,发明人认为NP siRNA的宽效力可能是因为NP在结合和稳定vRNA和cRNA中的重要性,而不是因为NP特异性siRNA非特异性地靶向RNA降解。流感病毒中的NP基因片段编码单链RNA-结合核蛋白,其结合于vRNA和cRNA(图14)。在病毒生命周期中,NP mRNA首先转录和翻译。NP蛋白的主要功能是为了RNA转录、复制和包装的目的而包裹病毒基因组。没有NP蛋白时,vRNA和cRNA的全长合成被削弱。当NP siRNA诱导NP RNA降解时,NP蛋白合成被削弱,导致缺少足够的NP蛋白,随后影响其它病毒基因片段的复制。以这种方式,NP siRNA可在早期有效抑制病毒繁殖。
已经假设受感染细胞中NP蛋白的数目调节mRNA合成及基因组RNA(vRNA和cRNA)复制的水平(1)。使用NP蛋白中温度敏感的突变,此前的研究表示cRNA而非mRNA的合成在体外和体内是温度敏感的(70、71)。已经显示NP蛋白对于新生cRNA和vRNA转录子的伸长和抗终止是需要的(7l、72)。此处列出的结果证明NP-特异性siRNA抑制受感染细胞中所有病毒RNA的蓄积。尽管不希望受束缚于任何理论,很可能在NP-特异性siRNA存在下,新转录的NP mRNA被降解,导致在病毒感染后抑制NP蛋白合成。没有新合成的NP,从而抑制进一步的病毒转录和复制以及新病毒粒子的产生。
类似地,在存在PA-特异性的时,新转录的PA mRNA被降解,导致PA蛋白合成的抑制。尽管存在每流感病毒粒子的30-60拷贝的RNA转录酶(1),没有新合成的RNA转录酶,进一步的病毒转录和复制可能受抑制。使用对PBl特异性的siRNA获得类似结果。相反,基质蛋白(M)直到病毒感染的后期才需要(1)。因此,M-特异性的siRNA抑制M-特异性mRNA而非vRNA、cRNA或其它病毒RNA的蓄积。总之,这些发现证明在流感病毒RNA转录和复制中非常需要新合成的核蛋白和聚合酶蛋白。NP-、PA-、和PBl-特异性siRNA干扰mRNA蓄积和其它病毒RNA转录的mRNA和病毒特异性机制表示,这些siRNA是流感病毒感染的尤其有效抑制物。
实施例6:一些siRNA对病毒RNA蓄积的作用不是由于干扰素应答或病毒诱导的RNA降解
使用PCR在标准条件下测量RNA水平。以下PCR引物用于测量γ-肌动蛋白RNA。
γ-肌动蛋白向前 :5’TCTGTCAGGGTTGGAAAGTC-3’(SEQ ID NO:l0774)
γ-肌动蛋白反向:5’-AAATGCAAACCGCTTCCAAC-3’(SEQ ID NO:10775)
导致如上所述宽抑制病毒RNA蓄积的一个可能原因是受感染细胞在siRNA存在下的干扰素应答(23、65、66)。因此在Vero细胞中重复上述试验,所述细胞中缺失了包括所有α、β、和ω)基因的完整IFN基因座(67、68)(Q.G.和J.C未公开数据)。如同在MDCK细胞中,NP-、M-、和NS-特异性siRNA都由NP-1496抑制(图18D)。此外,使用PCR检测了siRNA对胞内基因包括β-肌动蛋白、γ-肌动蛋白、和GAPDH转录子水平的效力。有或无siRNA存在没有检测到转录子水平的显著差异,说明siRNA的抑制效力对病毒RNA是特异性的。这些结果说明,某些siRNA对病毒RNA的宽抑制不是细胞干扰素应答的结果。
在流感病毒感染之后,dsRNA的存在也激活靶向RNA降解的细胞途径(23)。为了检测siRNA激活该途径的效力,我们检测了该途径最重要成分磷酸化蛋白激酶R(PKR)的水平(23)。不存在病毒感染的情况下以NP-1496转染MDCK细胞不影响激活的PKR的水平(数据未显示)。流感病毒的感染导致磷酸化PKR水平增加,与此前的研究一致(65、66、69)。然而存在或不存在NP-1496的情况下该增加是相同的(数据未显示)。因此,病毒RNA蓄积的宽抑制不是siRNA存在下增加病毒诱导降解的结果。
实施例7: RNA对小鼠流感病毒繁殖的抑制
本实施例描述了显示在流感病毒感染之前或之后给药靶向于流感病毒NP或PA转录子抑制小鼠流感病毒繁殖的试验。该抑制是剂量依赖性的,并当两种各靶向于不同流感病毒基因表达的转录子的siRNA一起给药时显示累加效应。
材料和方法
制备siRNA。这如上进行。
siRNA递送。siRNA(30或60μg GFP-949、NP-1496或PA-2087)与用于寡核苷酸阳离子聚合物转染剂的ietPEITM(N/P比=5(Qbiogene,Inc.,Carlsbad,CA;Cat.No.GDSP20 130;N/P指jetPEI/siRNA混合物中每核苷酸磷酸的氮数目))或聚-L-赖氨酸(MW(vis)52,000;MW(LALLS、)41,800,Sigma Cat.No.P2636)在5%葡萄糖中室温下保持29分钟。将混合物静脉注射入小鼠眼后静脉,每小鼠200μ1,每组4只小鼠。200μl 5%葡萄糖注射进对照(无处理)小鼠。以2.5%三溴乙醇麻醉小鼠,然后注射siRNA或鼻内感染。
病毒感染。以吸管将含有病毒的缓冲液滴加入小鼠鼻子,将B6小鼠(标准试验条件下维持)鼻内感染PR8病毒,每只小鼠30ul(12,000pfu)。确定病毒滴度。感染后各时间将小鼠处死,收集肺。将肺均质化,匀浆经冷冻和解冻2次以释放病毒。感染肺中存在的PR8病毒通过感染MDCK细胞而滴定。将平底96孔板接种3×104MDCK细胞/孔,24小时后去除含有血清的培养基。未稀释或从1×10-1稀释至l×10-7的25μl肺匀浆接种于三份孔。培养1小时后,带有4μg/ml胰蛋白酶的175μl感染培养基加至各孔。在37℃培养48小时后,由受感染细胞上清液的鸡RBC血凝素检测来确定病毒是否存在。血凝素检测在V-底96孔板中进行。上清液的系列2倍稀释液与等体积的鸡红细胞(Charies River Laboratories)0.5%悬浮液(vol/Vo1)混合,在冰上培养1小时。含有粘附、均匀层红细胞的孔记录为阳性。通过引入Reed和Muench方法感染50%孔的稀释端点(TCID50)来确定病毒滴度,较低的TCID50反映较低的病毒滴度。以Student t检验比较任何两组间的数据,该检验在此处试验中用于评价显著性。
图19A显示了试验结果,证实靶向病毒NP转录子的siRNA在感染之前给药时抑制小鼠流感病毒繁殖。30或60μgGFP-949或NP-1496 siRNA与jetPEI一起保持并静脉注射于小鼠,如材料和方法所述的。3小时后小鼠鼻内感染PR8病毒,每只小鼠12000pfu。感染24小时后收集肺。如图19A所示,未接受siRNA处理(NT;填充方块)或接受靶向于GFP的siRNA(GFP 60μg;空白方块)的小鼠的肺匀浆的平均logl0TCID50是4.2。以30μg靶向于NP的siRNA(NP 30gg;空白圆圈)和jetPEI预处理的小鼠中肺匀浆的平均logl0TCID50是3.9。以60μg靶向于NP的siRNA(NP 60μg;填充圆圈)和jetPEI预处理的小鼠中肺匀浆的平均log10TCID50是3.2。无处理组和接受60μg NP siRNA组的肺匀浆病毒滴度之间的差异是显著的(P=0.0002)。单独小鼠的数据示于表6A(NT=无处理)。
图19B显示了另一试验结果,证实靶向病毒NP转录子的siRNA在感染之前静脉给药时抑制小鼠流感病毒繁殖,所述给药是以含有阳离子聚合物PLL的组合物。30或60μgGFP-949或NP-1496 siRNA与PLL一起保持并静脉注射于小鼠,如材料和方法所述的。3小时后小鼠鼻内感染PR8病毒,每只小鼠12000 pfu。感染24小时后收集肺。如图19B所示,未接受siRNA处理(NT;填充方块)或接受靶向于GFP的siRNA(GFP 60μg;空白方块)的小鼠的肺匀浆的平均log10TCID50是4.1。以60μg靶向于NP的siRNA(NP 60μg;填充圆圈)和PLL预处理的小鼠中肺匀浆的平均log10TCID50是3.0。接受60μg GFP siRNA组和接受60μg NP siRNA组的肺匀浆病毒滴度之间的差异是显著的(P=0.001)。单独小鼠的数据示于表6A(NT=无处理)。这些数据表示靶向于流感NP转录子的siRNA在病毒感染之前给药时减少肺中病毒滴度。还表示siRNA与阳离子聚合物的混合物静脉注射有效抑制肺中流感病毒,不需要诸如流体转染等技术。
表6A.siRNA与阳离子聚合物抑制小鼠流感病毒繁殖
处理 | log10TCID50 | |||
NT (jetPEI试验 )GFP(60μg+jetPEINP(30μg+jetPEINIP(60μg+jetPENT(PLL试验 )GFP(60μg)+PLLNP(60μg)+PLL | 4.34.34.03.34.04.33.3 | 4.34.34.03.34.34.03.0 | 4.04.33.73.04.04.03.0 | 4.04.03.73.04.0(未进行)2.7 |
图19C显示了另一试验结果,证实靶向病毒NP转录子的siRNA在感染之前给药抑制小鼠流感病毒繁殖,而且阳离子聚合物存在时显著增加siRNA的抑制效力。60μg GFP-949或NP-1496 siRNA与磷酸缓冲盐(PBS)或jetPEI一起保持并静脉注射于小鼠,如材料和方法所述的。3小时后小鼠鼻内感染PR8病毒,每只小鼠12000pfu。感染24小时后收集肺。如图19C所示,未接受siRNA处理(NT;空白方块)的小鼠的平均1og10TCID50是4.1,而接受靶向于GFP的siRNA的PBS溶液(GFP PBS;空白三角)的小鼠的肺匀浆的平均log10TCID50是4.4。以60μg靶向于NP的siRNA的PBS溶液(NP PBS;填充三角)的小鼠中肺匀浆的平均log10TCID50是4.2,显示了相对于无处理或以靶向于GFP的siRNA处理的效力轻微增加。以60μg靶向于GFP的siRNA和jetPEI(GFP PEI;空白圆圈)预处理的小鼠中肺匀浆的平均log10TCID50是4.2。然而,以60μg靶向于NP的siRNA和jetPEI(NP PEI;填充圆圈)处理的小鼠中肺匀浆的平均log10TCID50是3.2。接受GFP siRNA的PBS溶液组和接受NP siRNA的PBS溶液组的肺匀浆病毒滴度之间的差异是显著的(P=0.04),而接受GFP siRNA与jetPEI的组和接受NP siRNA与jetPEI的组的肺匀浆病毒滴度之间的差异是非常显著的(P=0.003)。单独小鼠的数据示于表6B(NT=无处理)。
表6B.siRNA与阳离子聚合物显示了抑制小鼠流感病毒繁殖的增强的效力
处理 | log10TCID50 | |||
NTGFP(60μg)+PBSNP(60μg)+PBSGFP(60μg)+jetPEINT(60μg)+jetPEI | 4.34.33.74.33.3 | 4.34.34.34.33.0 | 4.04.74.04.03.7 | 3.74.34.03.03.0 |
进行其它试验以检验siRNA在感染前或感染后的各时间点给入时在感染后各时间抑制流感病毒繁殖的能力。
将siRNA如上所述地给药,除了在病毒感染前12小时给药120μgsiRNA。表6C显示了以log10TCID50表示的结果。比较NP-处理组与对照组的P值为0.049。
表6C
小鼠1 | 小鼠2 | 小鼠3 | 小鼠4 | |
NT | 4.3 | 4 | 4 | 4 |
GFPP-949 | 4.3 | 4 | 4 | 4 |
NP-1496 | 4 | 3.7 | 3.7 | 3.3 |
另一试验中,将siRNA(60μg)在感染前3小时给药。鼻内给予1500pfu的PR8病毒。感染48小时后收集受感染的肺。表6D显示了以log10TCID50表示的结果。比较NP-处理组与对照组的P值为0.03。
表6D
小鼠1 | 小鼠2 | 小鼠3 | 小鼠4 | |
NT | 4 | 4 | 4 | 4 |
GFP-949 | 4.3 | 4 | 4 | 3.7 |
NP-1496 | 3 | 3.7 | 3.7 | 3.3 |
另一试验中,将siRNA(120μg)在PR8病毒(1500 pfu)感染24小时后给药。感染52小时后收集受感染的肺并测量病毒滴度。表6E显示了以log10TCID50表示的结果。比较NP-处理组与对照组的P值为0.03。
表6E
小鼠1 | 小鼠2 | 小鼠3 | 小鼠4 | |
GFP-949 | 2.3 | 2.7 | 2 | 2.7 |
NP-1496 | 2 | 2 | 1.7 | 2 |
其它聚合物显示为有效的siRNA递送剂。图19D是显示靶向于NP(NP-1496)的siRNA与聚(β氨基酯)(J28)一起静脉给药时抑制小鼠中流感病毒繁殖的示意图。图19E是显示靶向于NP(NP-1496)的siRNA与聚(β氨基酯)(J28或C32)一起腹膜内给药时抑制小鼠中流感病毒繁殖的示意图,而对照RNA(GFP)无显著效果。该试验基本上如上所述,除了聚合物与siRNA的比例为重量/重量比(比如,60∶1w/w)。聚合物与siRNA混合并静脉或腹膜内地给药于小鼠,3小时后鼻内感染12,000pfu的PR8病毒。24小时后收集肺并进行HA检测。J28和C32中存在的胺和双(丙烯酸酯)单体如U.S.S.N.10/446,444所述和图示。聚合物由Dr.RobertLanger惠赠。
图20显示了试验结果,证实靶向不同流感病毒转录子的siRNA表现累加效应。60μgNP-1496 siRNA、60μgPA-2087 siRNA或60μgNP-1496siRNA+60μgPA-2087 siRNA与ietPEI一起保持并静脉注射于小鼠,如材料和方法所述的。3小时后小鼠鼻内感染PR8病毒,每只小鼠12000 pfu。感染24小时后收集肺。如图20所示,未接受siRNA处理(NT;填充方块)的小鼠的肺匀浆的平均log10TCID50是4.2。接受60μg靶向于NP的siRNA(NP 60μg;空白圆圈)的小鼠中肺匀浆的平均log10TCID50是3.2。接受60μg靶向于PA的siRNA(PA 60μg;空白三角)的小鼠中肺匀浆的平均log10TCID50是3.4。接受60μg靶向于NP的siRNA+60μg靶向于PA的siRNA(NP+PA;填充圆圈)的小鼠中肺匀浆的平均log10TCID50是2.4。无处理组和接受60μgNP siRNA组、60μgPA siRNA组或60μgNPsiRNA+60μgPAsiRNA组的肺匀浆病毒滴度之间的差异是显著的,分别为P=0.003、0.01、和0.0001。接受60μgNP siRNA或60μgNP siRNA组与接受60μgNIP siRNA+60μgPA siRNA组的肺匀浆之间的差异是显著的(P=0.01)。单独小鼠的数据示于表7(NT=无处理)。这些结果表示以靶向于流感NP或PA转录子的siRNA预处理减少随后以流感病毒感染的小鼠肺中病毒滴度。数据进一步说明靶向于不同病毒转录子的siRNA的组合表现累加效应,表示以靶向于不同转录子的siRNA的组合治疗可能允许达到相等效力所需每种siRNA剂量相对于单独siRNA的量减少。
表7.对小鼠流感病毒siNRA的累加效应
处理 | log10TCID50 | |||
NTNP(60μg)PA(60μg)NP+PA(各60μg) | 4.33.73.72.7 | 4.33.33.72.7 | 4.03.03.02.3 | 4.03.03.02.0 |
图21显示了试验结果,证实靶向病毒NP转录子的siRNA在感染之后给药时抑制小鼠流感病毒繁殖。小鼠鼻内感染PR8病毒,500 pfu。5小时后60μgGFP-949 siRNA、60μgPA-2087 siRNA、60μg NP-1496 siRNA或60μgNP-1 496 siRNA+60μgPA-2087 siRNA与jetPEI一起保持并静脉注射于小鼠,如材料和方法所述的。给药siRNA28小时后收集肺。如图21所示,未接受siRNA处理(NT;填充方块)或接受GFP特异性的siRNAGFP-949的siRNA(GFP;空白方块)的小鼠的肺匀浆的平均log10TCID50是3.0。接受60μg靶向于PA的siRNA(PA 60μg;空白三角)的小鼠中肺匀浆的平均log10TCID50是2.2。接受60μg靶向于NP的siRNA(NP 60μg;空白圆圈)的小鼠中肺匀浆的平均log10TCID50是2.2。接受60μg NPsiRNA+60μgPA siRNA(PA+NP;填充圆圈)的小鼠中肺匀浆的平均log10TCID50是1.8。无处理组和接受60μg PA、NP siRNA、或60μgNPsiRNA+60μg PA siRNA组的肺匀浆病毒滴度之间的差异是显著的,分别为P=0.09、0.02、和0.003。接受NP siRNA组和PA+NP siRNA组之间的肺匀浆病毒滴度差异具有0.2的P值。单独小鼠的数据示于表8(NT=无处理)。这些数据表示靶向于流感NP和/或PA转录子的siRNA在病毒感染之后给药时减少肺中病毒滴度。
表8.受感染小鼠中siRNA抑制流感病毒繁殖
处理 | log10TCID50 | |||
NTGFP(60μg)PA(60μg)NP(60μg)NP+PA(各60μg) | 3.03.02.72.72.3 | 3.03.02.72.32.0 | 3.03.02.32.31.7 | 3.02.71.31.71.3 |
实施例8:给药提供shRNA生产模板的慢病毒抑制细胞中流感病毒繁殖
如图22A所示,在U6启动子和慢病毒载体pLL3.7的终止序列之间克隆用作NP-1496a shRNA(见图22A)合成模板的寡核苷酸(Rubinson,D.,等,Nature Genetics,Vol.33,pp.401-406,2003)。该寡核苷酸插入pLL3.7多克隆位点内的HpaI和XhoI限制位点之间。该慢病毒载体还表达EGFP以方便监控转染/感染细胞。通过将包含生产NP-1496a shRNA的模板的DNA载体共转染并将载体包裹入293T细胞而生产慢病毒。48小时后,收集含有慢病毒的培养物上清液,在4℃、2000 rpm旋转7分钟,过滤通过0.45 um滤器。以1×105/孔将Vero细胞接种至24孔板。过夜培养后,含有包含插入物的培养物上清液(0.25ml或1.0ml)在8ug/ml聚凝胺存在下加入各孔。在2500rpm、室温离心板1小时,然后恢复培养。感染24小时后,所得的Vero细胞系(Vero-NP-0.25和Vero-NP-1.0)与亲本(未感染的)Vero细胞通过流式细胞术分析GFP表达。注意到NP-1496a不同于NP-1496,因为在有义部分3’端意外并入一个附加核苷酸(A)和在反义部分5’端并入互补核苷酸(U),导致20 nt长的双链体部分,而不是NP-1496中的19。(见表2)。根据本发明的其它实施例,使用NP-1496序列而不是NP-1496a序列。此外,NP-1496a shRNA的环部分不同于NP-1496 shRNA的环部分。
对照Vero细胞和以含有插入部分的慢病毒感染的Vero细胞(Vero-NP-0.25和Vero-NP-1.0)以MOI 0.04、0.2和1感染PR8病毒。感染48小时后如上所述以HA检测确定上清液中的流感病毒滴度。
在Vero细胞中检测含有用于生产NP-1496a shRNA的模板的慢病毒抑制流感病毒繁殖的能力。NP-1496a shRNA包括能形成茎-环结构的两个互补区,该结构含有与NP-1496a shRNA同样序列的双链部分。如图22B所示,含有慢病毒的上清液与Vero细胞培养过夜导致表达EGFP,表示Vero细胞被慢病毒感染。阴影曲线代表对照细胞(未感染)中平均荧光强度。当使用1ml上清液时,几乎所有细胞变成EGFP阳性,平均荧光强度高(1818)(Vero-NP-1.0)。当使用0.25 ml上清液时,大多数细胞变成EGFP阳性,平均荧光强度低(503)(Vero-NP-0.25)。
亲本Vero细胞和慢病毒感染的Vero细胞以MOI 0.04、0.2和l感染流感病毒,感染48小时后检测病毒滴度。随着MOI增加,亲本Vero细胞培养上清液中病毒滴度增加(图22C)。相反,Vero-NP-1.0细胞培养上清液中病毒滴度保持很低,表示这些细胞中流感病毒繁殖被抑制。类似地,Vero-NP-0.25细胞培养物中流感病毒繁殖也部分地被抑制。病毒滴度示于表9。这些结果表示,慢病毒表达的NP-1496 shRNA可被加工为siRNA以抑制Vero细胞中流感病毒繁殖。抑制的程度与每细胞病毒感染的程度(由EGFP水平表示)成正比。
表9.组织培养中细胞表达的siRNA抑制流感病毒繁殖
细胞系 | 病毒滴度 | ||
VeroVero-NP-0.25Vero-NP-1.0 | 1681 | 64324 | 128648 |
实施例9:鼻内给药转录siRNA前体的DNA载体抑制小鼠流感产生
如上所述地构建表达NP-1496a shRNA的质粒。如图22A对NP-1496ashRNA所示的,在U6启动子和慢病毒载体pLL3.7的终止序列之间克隆用作PBl-2257 shRNA或RSV特异性shRNA合成模板的寡核苷酸。寡核苷酸的序列如下:
NP-1496a有义:
5'-
TGGATCTTAITTTCTTCGGAGATTCAAGAGATCTCCGAAAGAAATAAGATCCTITTTTC-3’(SEQ ID NO:10776)
NP-1496a反义:
5’-
TCGAGAAAAAAGGATCTTATTTCTTCGGAGATCTCTTGAATCTCCGAAGAAATAA
GATCCA-3’(SEQ ID NO:10777)
PBl-2257有义:
5’-TGATCTGTTCCACCATTGAATTCAAGAGATTCAATGGTGGAACAGATTCCTTTTTTC-3'(SEQ ID NO:10778)
PBl-2257反义:
5’-
TCGAGAAAAAAGATCTGTFCCACCATTGAATCTCTTGAATTCAATGGTGGAACAGATCA-3’(SEQ ID NO:10779)
RSV有义:
5’-TGCGATAATAATAACTGCAAGATTCAAGAGATCTTGCAGTTATATTATCGTTTTTTC-3’(SEQ ID NO:10780)
RSV反义:
5’-
TCGAGAAAAAACGATAATATAACTGCAAGATCTCTTGAATCTTGCAGTTATATTA
tCGCA-3’(SEQ ID NO:10781)
包含上述寡核苷酸的载体表达的RSV shRNA在体内加工以产生具有以下序列的有义链和反义链的siRNA:
有义:5′-CGATAATATAACTGCAAGA-3′(SEQ ID NO:10782)
反义:5′-TCTTGCAGTTATATTATCG-3′(SEQ ID NO:10783)
使用下述寡核苷酸可类似地构建PA特异性发夹:
PA-2087有义:
5’-TGCAATTGAGGAGTGCCTGATTCAAAGGATCAGGCACTCCTCAATTGCTTTTTTC-3'(SEQ ID NO:10784)
PA-2087反义:
5’-
TCGAGAAAAAAGCAATTGAGGAGTGCCTGATCTCTTGAATCAGGCACTCCTCAATTGCA-3’(SEQ ID NO:10785)
能够作为NP-1496a shRNA、PB 1-2257 shRNA、或RSV特异性shRNA表达模板的质粒DNA(各60μg)各自与40μl Infasulf(ONY,Inc.,AmherstNY)和20μl 5%葡萄糖混合并鼻内给药于小鼠组,每组4只小鼠。无处理(NT)组中给药40μl Infasulf和20μl 5%葡萄糖。13小时后如上所述地以PR8病毒每小鼠12000 pfu鼻内感染小鼠。感染后24小时收集肺并确定病毒滴度。
测试了DNA载体表达的shRNA抑制小鼠流感病毒感染的能力。对这些试验,质粒DNA与Infasulf混合,Infasulf是萃取自牛肺的一种天然表面活性剂,类似于此前显示为促进肺中基因转移的载体(74)。使用吸管将DNA/Infasulf混合物滴注到鼻。13小时后以PR8病毒每小鼠12000 pfu鼻内感染小鼠。流感病毒感染后24小时收集肺并由MDCK/血凝素检测测量病毒滴度。
如图23所示,未给予任何质粒DNA或给予表达呼吸道合胞病毒(RSV)-特异性shRNA的小鼠中病毒滴度高。观察到给予表达NP-1496ashRNA或PBl-2257 shRNA的小鼠中病毒滴度低。当同时给予一种表达NP-1496a shRNA的流感特异性质粒DNA和另一种表达PBl-2257 shRNA的流感特异性质粒DNA时,病毒滴度更显著降低。
未接受siRNA处理(NT;空白方块)或接受编码RSV特异性shRNA的质粒(RSV;填充方块)的小鼠的肺匀浆的平均log10TCID50分别是4.0或4.1。接受能作为NP-1496a shRNA模板的质粒(NP;空白圆圈)的小鼠中肺匀浆的平均log10TCID50是3.4。接受能作为PB1-2257 shRNA模板的质粒(PB;空白三角)的小鼠中肺匀浆的平均log10TCID50是3.8。接受能作为NP shRNA和PB shRNA模板的质粒(NP+PB1;填充圆圈)的小鼠中肺匀浆的平均log10TCID50是3.2。无处理组或接受RSV特异性shRNA质粒组和接受NP shRNA质粒、PB1 shRNA质粒、或NP和PB1 shRNA质粒组的肺匀浆病毒滴度之间的差异分别具有0.049、0.124、和0.004的P值。单独小鼠的数据示于表10(NT=无处理)。这些数据表示DNA载体表达的shRNA可被加工为siRNA以抑制小鼠流感病毒繁殖,并证明Infasulf是用于递送可表达shRNA的质粒的合适载体。尤其是,这些数据表示靶向于流感NP和/或PBl转录子的shRNA当在病毒感染后给药时减少肺中病毒滴度。
表10.小鼠中表达的shRNA抑制流感病毒繁殖
处理 | log10TCID50 | |||
NTRSV(60μg)NP(60μg)PB1(60μg)NP+PBB1(60μg各) | 4.34.34.04.03.7 | 4.04.03.74.03.3 | 4.04.03.03.73.0 | 4.34.03.03.33.0 |
实施例10A:向血管系统或呼吸道递送siRNA抑制肺中萤光素酶活性
siRNA获自Dharmacon,如上所述地脱保护和退火。NP(NP-1496)、PA(PA-2087)、PB1(PB1-2257)、和GFP的siRNA序列如上所述。Luc-特异性siRNA描述于(McCaffrey,AP,等.,Nature,418:38-39)。
pCMV-luc DNA(Promega)与PEI(Qbiogene,Carlsbad,CA)以10的氮/磷摩尔比(N/P比)室温下混合20分钟。对于静脉注射,含有60μgDNA的200μl混合物眶后注射到8周大的雄性C57BL/6小鼠(Taconic Farms)。对于气管内给药,使用Penn Century Model IA-IC吹入器将含有30μg或60μg DNA的50μl混合物给药于麻醉小鼠的肺。
将Luc-特异性或GFP特异性siRNA与ietPEI以5的N/P比在室温下混合20分钟而形成siRNA-PEI组合物。对静脉注射,含有指定量siRNA的200μl混合物眶后注射。对肺给药,气管内递送50μl。
pCMV-luc DNA给药各个时间后,收集肺、脾、肝、心脏和肾并在Cell Lysis Buffer(细胞裂解缓冲液)(Marker Gene Technologies,Eugene,OR)中匀浆。以Luciferase Assay System(荧光素酶测定系统)(Promega)分析发光,Optocomp I发光计(MGM Instruments,Hamden,CT)测量。匀浆中的蛋白浓度以BCA检测(Pierce)测量。
为了确定PEI介导的核酸递送在小鼠中的组织分布,静脉注射pCMV-luc DNA-PEI复合物,24小时后测量各器官中Luc活性。肺中活性最高,至少4天检测到Luc活性,而在心、肝、脾和肾中,水平低100-1,000倍且在注射后短时间检测到。当DNA-PEI复合物鞘内滴注时,肺中也检测到显著的Luc活性,尽管比静脉注射后水平低。
为了检测PEI在静脉注射后促进肺对siRNA摄取的能力,对小鼠首先鞘内注射给予pCMV-luc DNA-PEI复合物,然后静脉注射与PEI络合的Luc特异性siRNA、与PEI络合的对照GFP特异性siRNA、或同样体积的5%葡萄糖。24小时后,接受Luc siRNA的小鼠肺中Luc活性比接受GFP siRNA或无处理的小鼠肺中Luc活性低17倍。因为Luc siRNA仅能在转染DNA载体的同一肺细胞中抑制Luc表达,这些结果表示siRNA-PEI混合物的静脉注射达到对肺中靶转录子的有效抑制。
为了检测PEI在肺给药后促进肺对siRNA摄取的能力,对小鼠首先静脉注射给予pCMVDNA-PEI复合物,然后鞘内注射与PEI混合的Luc特异性siRNA、与PEI混合的对照GFP特异性siRNA、或同样体积的5%葡萄糖。24小时后,检测肺匀浆中萤光素酶活性。萤光素酶siRNA处理的小鼠中萤光素酶活性比以GFP siRNA处理的小鼠低6.8倍。这些结果表示siRNA-PEI混合物的肺给药达到对肺细胞中靶转录子的有效抑制。
实施例10B:向呼吸系统递送siRNA抑制肺中亲环蛋白B
亲环蛋白B是一种在哺乳动物中广泛表达的内源基因。为了检测直接递送至呼吸系统的siRNA抑制内源基因表达的能力,远亲后代Blackwiss小鼠(体重约30 g或更多)由异氟醚/氧气麻醉,靶向于亲环蛋白B的siRNA(Dharmacon,D-001136-01-20 siCONTROL Cyclophilin B siRNA、)(人/小鼠/大鼠)或对照GFP-949 siRNA(2mg/kg)鼻内给药于小鼠的组,每种siRNA给药2只小鼠。给药24小时后收集肺。从肺提取RNA,使用随机引物进行反转录。然后使用亲环蛋白B和GAPDH Taqman基因表达检测(AppliedBiosystems)进行实时PCR。结果(表11-1)显示靶向于亲环蛋白B的siRNA沉默了70%亲环蛋白B。
表11:肺中亲环蛋白B的抑制
平均 标准化 平均标准化 沉默%
PBS-1 5.395406 4.288984
PBS-2 3.182562
GFP-1 2.547352 3.752446 12.50968
GFP-2 4.957539
Cyclo-1 1.173444 1.256672 70.7
Cyclo-2 1.339901--
表11-2:NP基因中的靶部分
ID编号 | 序列 | 核苷酸位置 | |
1 | agcaaaagcaggguagaua | (SEQ ID NO:10786) | 1-19 |
2 | gcaaaagcaggguagauaa | (SEQ ID NO:10787) | 2-20 |
3 | caaaagcaggguagauaau | (SEQ ID NO:10788) | 3-21 |
4 | aaaagcaggguagauaauc | (SEQ ID NO:10789) | 4-22 |
5 | aaagcaggguagauaauca | (SEQ ID NO:10790) | 5-23 |
6 | aagcaggguagauaaucac | (SEQ ID NO:10791) | 6-24 |
实施例11:向呼吸系统直接递送裸siRNA抑制流感病毒
材料和方法
如上所述地进行siRNA制备、病毒感染、肺收集、和流感病毒滴度检测。使用异氟醚(吸入给药)麻醉小鼠。以鼻内滴管递送50μl体积的siRNA。使用Student’s T检验法计算p值。
结果
磷酸缓冲盐(PBS)中的siRNA(NP-1496)给药于小鼠组(每组5只小鼠)。给药siRNA3小时后以流感病毒(2000 PFU)感染小鼠。感染24小时后收集肺和测量病毒滴度。在预备试验中以三溴乙醇麻醉小鼠,以鼻内滴管给药2 mg/kg的siRNA。观察到相对于对照病毒滴度的减少,尽管未达到统计显著度(数据未显示)。
在第二个试验中,使用异氟醚/O2麻醉Black Swiss小鼠。PBS中的siRNA以各种量给药于小鼠,每只小鼠50 ul。3个不同组(每组5只小鼠)以鼻内滴管接受2mg/kg、4mg/kg、或10mg/kg PBS中的siRNA的剂量。第四组仅接受PBS作为对照。3小时后,使用异氟醚/O2再次麻醉小鼠,鼻内给予30ul的PR8病毒(2000pfu=4×致死剂量)。感染24小时后收集小鼠肺,匀浆并如上所述使用TCID50评价来测量病毒滴度。对肺匀浆的5倍稀释而不是10倍稀释进行。
三组处理组各自和对照组的小鼠之间观察到显著和剂量依赖性的病毒滴度差异(表12)。接受2mg/kg、4mg/kg、和10mg/kg剂量的组相对于对照病毒滴度的减少分别为3.45倍(p=0.0125)、4.16倍(p=0.0063)、和4.62倍(p=0.0057)。
总之,这些结果证明水性介质中递送到呼吸系统的siRNA在没有增强递送的特异性药剂时的效力。
表12:裸siRNA的鼻内递送抑制流感病毒繁殖
处理 | logl0TCID50 | 平均 | P值 | ||||
PBS | 26718.37 | 45687.78 | 45687.78 | 15625 | 2671 8.37 | 32087.46 | |
NP(2mg/kg) | 15625 | 15625 | 3125 | 3125 | 9137.56 | 9327.51 | 0.008 |
NP(4mg/kg) | 9137.56 | 9137.56 | 5343.68 | 9137.56 | 5343.68 | 7620 | 0.004 |
NP(10mg/kg) | 9137.56 | 9137.56 | 9137.56 | 3125 | 3125 | 6732.53 | 0.003 |
实施例12:向呼吸系统直接递送裸siRNA抑制小鼠流感病毒繁殖
本实施例证实了上述结果,并证明水性介质中递送到呼吸系统的靶向于NP的siRNA在没有增强递送的药剂时抑制肺中流感病毒繁殖。6μg、15μg、30μg、和60μg于PBS中的NP-1496 siRNA或60μg GFP-949 siRNA鼻内滴注到小鼠,大致如上所述,除了小鼠在siRNA递送2小时后鼻内感染PR8病毒,每只小鼠1000pfu。感染24小时后收集肺。水性介质中鼻内滴注的NP特异性siRNA在没有递送剂时有效抑制流感病毒。三组处理组各自和对照组的小鼠之间观察到显著和剂量依赖性的病毒滴度差异(表13)。
表13:裸siRNA抑制肺中流感病毒繁殖
处理 | TCID50 | 平均 | P值 | ||||
PBS | 125 | 365.5 | 213.7 | 365.5 | 125 | 239.95 | |
GFP(60μg) | 125 | 213.7 | 213.7 | 213.7 | 365.5 | 226.32 | |
NP(6μg) | 213.7 | 213.7 | 125 | 213.7 | 42.7 | 161.8 | 0.263 |
NNP(15μg) | 125 | 125 | 42.7 | 25 | 73.1 | 78.17 | 0.024 |
NP(30μg) | 8.5 | 125 | 42.7 | 125 | 14.6 | 63.18 | 0.019 |
NP(60μg) | 73.1 | 14.6 | 25 | 25 | 25 | 32.54 | 0.006 |
实施例13:修饰的siRNA介导有效沉默
为了研究含有修饰核苷酸的siRNA的沉默效力,合成含有在每条链的代替核糖核苷酸具有2’-O-甲基修饰的有义链和反义链的NP-1496 siRNA,并与未修饰的NP-1496 siRNA比较测试。2’-O-甲基修饰的NP-1496 siRNA序列如下(2’-O-甲基示为修饰核苷酸前面的“m”):
有义:5’-GmGA mUCmU UmAU mUUmC UmUC mGGmA G dTdT-3’(SEQ ID NO:10792)
反义 :5’-mCUmC CmGA mAGmA AmAU mAAmG AmUC mC dTdT-3’(SEQ IDNO:10793)
根据制造商的指导,使用lipofectamine 2000(Invitrogen)将2’-O-甲基修饰的NP-1496 siRNA和未修饰的NP-1496 siRNA转染到24孔板中的Vero细胞。转染6小时后,抽吸培养基。将细胞以MOI 0.1接种200μl的PR8病毒。感染24、36和48小时后收集培养上清液。如上所述地确定病毒滴度。2’-O-甲基修饰的NP 1496比未修饰的NP 1496显示略微抑制病毒繁殖。结果见表14。
表14:使用修饰的siRNA有效抑制流感病毒繁殖
HA·单位 | 24h | 36h | 48h |
No siRNA对照 | 4 | 8 | 16 |
未修饰 NP1496(400uM) | 1 | 2 | 8 |
修饰 NP1496(100uM) | 1 | 2 | 8 |
修饰 NP1496(200uM) | 1 | 2 | 4 |
修饰 NP1496(400uM) | 1 | 1 | 4 |
实施例14:向呼吸系统直接口气管(oraltracheal)递送裸siRNA抑制流感病毒
如上所述地进行siRNA制备、病毒感染、肺收集、和流感病毒滴度检测。使用三溴乙醇(腹膜内注射给药)麻醉小鼠。以口气管注射递送175μl体积的1mg/kg siRNA。
1mg/kg siRNA(NP-1496)和5%葡萄糖中的30ul Infasurf给药于小鼠组(每组5只小鼠)。给药siRNA3小时后以流感病毒(2000 PFU)感染小鼠。感染24小时后收集肺和测量病毒滴度。
在第二个试验中,腹膜内给药三溴乙醇麻醉Black Swiss小鼠。PBS中的NP-1496 siRNA和GFP-949 siRNA气管内给药于小鼠,每只小鼠50ul。第三组仅接受PBS作为对照。3小时后,使用异氟醚/O2再次麻醉小鼠,鼻内给予30ul的PR8病毒(2000pfu=4×致死剂量)。感染24小时后收集小鼠肺,匀浆并如上所述使用TCID50评价来测量病毒滴度。对肺匀浆的5倍稀释而不是10倍稀释进行。
总之,这些结果证明水性介质中递送到呼吸系统的siRNA在没有增强递送的特异性药剂时的效力。
实施例15:核苷酸突变耐受研究以选择靶向广谱流感病毒的siRNA
该实施例证明其反义链与抑制区内靶转录子小于100%互补(如在互补于靶转录子的19碱基对区内)的siRNA介导有效沉默。结果证明此处所述的RNAi将有效抑制宽范围的序列不同于PR8靶部分的流感毒株。
双荧光素酶检测用于评价siRNA抑制流感基因表达的能力,该流感基因不是100%互补于siRNAl9核苷酸抑制区内的反义链。人与禽流感病毒毒株(使用PR8作为标准)比对获得的错配使用位点引导的诱变试剂盒(Stratagene)引入DNA载体(psiCHECK),即流感靶位点被修饰以包括相对于PR8病毒的1或2个差异,特异性差异对应于人类或禽流感毒株中的一个或多个中发现的差异。
表15显示了试验结果,证明病毒NP靶(对NP-1496的靶)中的变异没有实质降低RNAi活性。(数据是三次试验平均数)。测试了靠近反义链5’或3’端位置或靠近中间的错配。
表15:反义链和靶区之间错配对NP-1496沉默的影响
原始 | A3至G3 | T9至C9 | C12至T12 | C15至T15 | A18至G18 | |
花虫荧光素酶沉默(%) | 85.6 | 81.8 | 58.3 | 67.8 | 72.9 | 54.7 |
与原始相比剩余的沉默(%) | 100 | 91.3 | 65.1 | 75.7 | 81.4 | 61.1 |
病毒PA靶(PA-2087或PA-8282的靶)的变异不会实质降低RNAi活性。然而,157种人类流感毒株中7种毒株中的G18至A18突变确实实质影响了RNA干扰活性。测试了靠近反义链5’或3’端位置或靠近中间的错配。反义链抑制区与靶之间两个错配的存在减少沉默约70-75%,但仍观察到有用程度的沉默(表16)。
表16:反义链和靶区之间错配对PA-2087或PA-8242沉默的影响
原始 | A4至G4 | T6至A6 | T6至C6 | C15至T15 | G18至A18 | A19至G19 | T6至C6和C15至T15 | |
花虫荧光素酶沉默(%) | 91.7 | 80.8 | 75.9 | 88.8 | 87.5 | 7.0 | 89.3 | 26.8 |
与原始相目比剩余的沉默(%) | 100 | 88.1 | 82.8 | 96.9 | 95.5 | 7.6 | 97.4 | 29.3 |
表1 7显示了试验结果,证明病毒PB2靶(对PB2-38 17的靶)中的变异没有实质降低RNAi活性。(数据是三次试验平均数)。
表17:反义链和靶区之间错配对PB2-3817沉默的影响
原始 | A17至G17 | A18至T18 | |
花虫荧光素酶沉默(%) | 86.7 | 73.4 | 75.8 |
与原始相比剩余的沉默(%) | 100 | 100 | 87.4 |
表18显示了试验结果,证明病毒PBl靶(对PBl-6124的靶)中的变异没有实质降低RNAi活性。(数据是三次试验平均数)。测试了靠近反义链5’或3’端位置或靠近中间的错配。反义链抑制区与靶之间两个错配的存在减少沉默约70-75%,但仍观察到有用程度的沉默。
表18-1:反义链和靶区之间错配对PBl-6124沉默的影响
原始 | C15至T15 | A1至G1 | T2至C2 | G3至A3 | A1至T1和G3至A3 | |
PBl(Lab ID#6124 siRNA)花虫荧光素酶沉默(%) | 84.1 | 71.8 | 82.8 | 84.5 | 74.9 | 73.9 |
与原始相比剩余的沉默(%) | 100 | 85.4 | 98.5 | 100 | 89.1 | 87.9 |
表18-2:反义链和靶区之间错配对PBl-6129沉默的影响
原始 | T3至C3 | T7至C7 | T2至C2 | C10至T10 | T3至C3和C10至TI0 | |
PBl(Lab ID#6129 siRNA)花虫荧光素酶沉默(%) | 86.4 | 87.3 | 84.4 | 84.5 | 813 | 59.6 |
与原始相比剩余的沉默(%) | 100 | 100 | 97.8 | 100 | 94.2 | 68.3 |
除了以上表格所述的结果,本实施例还证明本发明的十种示例siRNA双链体耐受siRNA反义链核苷酸序列和病毒转录子靶区核苷酸序列之间的错配。本实施例中,确定了21种预先鉴定的siRNA耐受靶序列突变的能力。为了达到此,使用PR8毒株作为参考比对了所有人和禽流感基因序列(提供于www.lanl.flu.gov)的靶位点。鉴别了单核苷酸多态性(SNP)并使用位点引导诱变引入双-荧光素酶报告构建体。含有对照靶序列(PR8)或变体的表达载体随后转染Vero细胞,并伴有50 nM合适靶向的siRNA以确定每种siRNA耐受核苷酸错配的敏感度。
21种siRNA中,10种siRNA表现高程度的沉默(%沉默)并高度耐受靶位点多态性。表19概述了10种siRNA(INFsi-1至INFsi-8和G1499和G4276)的沉默百分比数据。显示了每种siRNA的核苷酸序列,作为位点引导诱变的靶的核苷酸加粗并加下划线。“错配”栏表示原始核苷酸和其在siRNA中沿着核苷酸位置原始核苷酸被取代的位置(突变核苷酸)(显示在括号中)。沉默百分比是相对于天然(PR8)观察到沉默的百分比。因此,100%相对沉默表示相比于siRNA沉默精确匹配靶序列(PR8),对siRNA的功能没有影响。相对沉默百分比的减少代表siRNA对靶序列中错配的敏感度(即,较低百分比等于siRNA功能减少;“功能”在此定义为siRNA降解其靶RNA的能力)。
表19:siRNA对天然发生的靶位点点突变的敏感度
siRNA | siRNA核苷酸序列 | 错配 | 相对%沉默 | |
原始核苷酸(位置) | 突变核苷酸(位置) | |||
G3789(INFsi-1) | CGGGACTCTAGCATACTTA(SEQ ID NO:11482) | G(3) | A(3) | 100% |
G(4) | A(4) | 100% | ||
C(8) | T(8) | 72.4% | ||
T(9) | C(9) | 50.1% | ||
A(15) | G(15) | 81.9% | ||
C(16) | G(16) | 0 | ||
T(18) | G(18) | 74.2% | ||
G3807INFsi-2) | ACTGACAGCCAGACAGCGA(SEQ ID NO:11483) | C(2) | A(2) | 100% |
C(6) | T(6) | 91.8% | ||
C(9) | T(9) | 50.7% | ||
A(15)+G(16) | G(15)+A(16) | 41.5% | ||
G3817(INFsi-3) | AGACAGGCGACCAAAAGAAT(SEQ ID NO:11484) | A(17) | G(17) | 100% |
A(18) | T(18) | 87% | ||
A(18) | C(18) | 80.5% | ||
T(19) | C(19) | 95.7% | ||
T(19) | A(19) | 100% | ||
G6124(INFsi-4) | ATGAAGATCTGTTCCACCA(SEQ ID NO:11485) | A(1) | T(1) | 100% |
A(1) | G(1) | 98.5% | ||
I(2) | C(2) | 100% | ||
G(3) | A(3) | 89.1% | ||
A(5) | G(5) | 94.7% | ||
T(8) | C(8) | 77% | ||
T(12) | C(12) | 100% | ||
C(15) | T(15) | 85.4% | ||
A(1)+G(3) | T(1)+A(3) | 87.9% | ||
T(8)+C(15) | C(8)+T(15) | 32.2% | ||
G6129(INFsi-5) | GATCTGTTCCACCATTGAA(SEQ ID NO:11486) | T(3) | C(3) | 100% |
T(7) | C(7) | 97.8% | ||
C(10) | T(10) | 94.2% | ||
T(3)+C(10) | C(3)+T(10) | 68.3% | ||
G8282(INFsi-6) | GCAATTGAGGAGTGCCTGA(SEQ ID NO:11487) | A(4) | G(4) | 88.1% |
T(6) | A(6) | 82.8% | ||
T(6) | C(6) | 96.9% | ||
C(15) | T(15) | 95.5% | ||
G(18) | A(18) | 7.6% | ||
A(19) | G(19) | 97.4% | ||
T(6)+C(15) | C(6)+T(15) | 29.3% | ||
G8286(INFsi-7) | TTGAGGAGTGCCTGATTAA(SEQ ID NO:11488) | T(2) | C(2) | 100% |
T(2) | A(2) | 100% | ||
G(8) | A(8) | 100% | ||
C(11) | T(11) | 100% |
G(14) | A(14) | 85.2% | ||
A(15) | G(15) | 95.4% | ||
G1498(INFsi-8) | GGATCTTATTTCTTCGGAG(SEQ ID NO:11489) | A(3) | G(3) | 95.7% |
T(9) | C(9) | 86.5% | ||
C(12) | T(12) | 85.4% | ||
C(15) | T(15) | 91.7% | ||
A(18) | G(18) | 94.4% | ||
G1499 | GATCTTATTTCTTCGGAGA(SEQ ID NO:11490) | A(2) | G(2) | 63.6% |
T(8) | C(8) | 27.5% | ||
C(11) | T(11) | 38.3% | ||
C(14) | T(14) | 36.8% | ||
A(17) | G(17) | 33.2% | ||
G4276 | ACCTATGACTGGACTCTAA(SEQ ID NO:11491) | C(3) | A(3) | 100% |
C(3) | T(3) | 99.5% | ||
A(5) | T(5) | 95.1% | ||
T(6) | C(6) | 99% | ||
C(9) | T9(9) | 89.5% | ||
T(15) | C(15) | 38.1% | ||
T(15) | G(15) | 57.4% | ||
T(15) | A(15) | 40.8% | ||
C(16) | T(16) | 47.5% | ||
A(18) | G(18) | 82.2% | ||
C(9)+T(15) | T(9)+A(15) | 17.4% | ||
C(16)+A(18) | T(16)+G(18) | 28.4% | ||
T(15)+C(16)+A(18) | G(15)+T(16)+G(18) | 4.9% | ||
T(15)+C(16)+A(1g) | A(15)+T(16)+G(18) | 10.3% | ||
e(3)+A(5)+T(6)+C(9)+A(18) | T(3)+T(5)+C(6)+T(9)+G(18) | 7.6% |
如表19所示,70种含有SNP的禽/人靶中只有19种破坏siRNA功能的超过30%。这些突变体中的两种中,INFsi-2已经在位置9改变(对siRNAINFsi-2的突变-9和对siRNA INFsi-1的突变-4),其靠近RISC介导的裂解位点并预测为对碱基对错配尤其敏感。令人惊讶的是,含有两个靶位点多态性的四种变体中的三种显示了靶裂解水平的显著降低(如siRNAINFsi-4)。携带单个多态性的变体都没有显著阻止siRNA功能。
这些数据表示,10种siRNA表现对大多数人和禽流感病毒毒株的宽的靶向性,证明10种siRNA具有作为有效RNAi治疗剂的多基因靶向策略的巨大潜力。
表20中,表2中最高度保守的序列已经与取自甲型流感病毒序列变体的其它19-mer序列匹配,该19-mer序列具有仅1或几个核苷酸错配而不同于最初19-mer序列。通过以表2所示高度保守19-mer序列片段作为参考序列,搜索表1所列序列而得到表20中的19-mer序列。对每个19-mer参考序列,在每个靶甲型流感病毒序列中发现最匹配19-mer片段的靶片段。最接近匹配的靶片段是在参考片段和靶片段之间具有最少数目核苷酸差异的片段。如果两个靶片段与参考片段具有相同数目的核苷酸差异,那么优选能在靶片段有义链与参考片段反义链之间能形成更多GU摇摆碱基对的靶片段。
表20-1.从表1-1所列甲型流感片段1(PB2)序列得到的保守和小变体19-mer序列。保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化。
Seq Ref
匹配序列 %总数 5519 11 CAGCGACCAAAAGgADDCG 0.3%
ID ID
1 1 GCCAGACAGCGACCAAAAG 99.5% 5520 CAGCGACCAAAgGAAUUCG 0.1%
5484 1 GCCAGACAGCGACCAAAgG 0.1% 5521 CAGCGACCAAAAGAuUUCG 0.1%
5485 1 GuGAGACAGCGACCAAAAG 0.2 5522 11 CgaCGAuCAAAAGAAUUCG 0.1%
5486 1 GCCAGACgaCGAuCAAAAG 0.1% 12 12 ACUUACUGACAGCCAGACA 99.1%
2 2 AGCCAGACAGCGACCAAAA 99.5% 5523 12 ACUUACUGACAGuCAGACA 0.2%
5487 2 AGCCAGACAGCGACCAAAg 0.1% 5524 12 ACUUACUGAuAGCCAGACA 0.3%
5488 2 AGuCAGACAGCGACCAAAA 0.2% 5525 12 gCUUACUGACAGCCAGACg 0.1%
5489 2 AGCCAGACgaCGAuCAAAA 0.1% 5526 12 gCUUACcGACAGCCAGACA 0.2%
3 3 ACAGCCAGACAGCGACCAA 99.3% 13 13 CAUACUUACUGACAGCCAG 99.1%
5490 3 ACAGuCAGACAGCGACCAA 0.2% 5527 13 CAUACUUACUGACAGuCAG 0.2%
5491 3 AuAGCCAGACAGCGACCAA 0.3% 5528 13 CAUACUUACUGAuAGCCAG 0.3%
5492 3 ACAGCCAGACgaCGAuCAA 0.1% 5529 13 CAUgCUUACUGACAGCCAG 0.1%
4 4 GACAGCCAGACAGCGACCA 99.3% 5530 13 CAUACUUACcGACAGCCAG 0.2%
5493 4 CACAGuCAGACAGCGACCA 0.2% 14 14 CUUACUGACAGCCAGACAG 99.1%
5494 4 GAuAGCCAGACAGCGACCA 0.3% 5531 14 CUUACUGACAGuCAGACAG 0.2%
5495 4 GACAGCCAGACgaCGAuCA 0.1% 5532 14 CUUACUGAuAGCCAGACAG 0.3%
5 5 CAGACAGCGACCAAAAGAA 99.3% 5533 14 CUUACcGACAGCCAGACAG 0.2%
5496 5 CAGACAGCGACCAAAAGgA 0.3% 5534 14 CUUACUGACAGCGAGACga 0.1%
5497 5 CAGACAGCGACCAAAgGAA 0.1% 15 15 GACAGCGACCAAAAGAAUU 99.1%
5498 5 CAGACAGCGACCAAAAGAu 0.1% 5535 15 GACAGCGACCAAAAGgAUU 0.3%
5499 5 CAGACgaCGAuCAAAAGAA 0.1% 5536 15 GACAGCGACCAAAgGAAUU 0.1%
6 6 CAGCCAGACAGCGACCAAA 99.3% 5537 15 GACAGCGACCAAAAGAuUU 0.1%
5500 6 CAGuCAGACAGCGACCAAA 0.2% 5538 15 GACgaCGAuCAAAAGAAUU 0.1%
5501 6 uAGCCAGACAGCGACCAAA 0.3% 16 16 AUACUUACUGACAGCCAGA 99.1%
5502 6 CAGCCAGACgaCGAuCAAA 0.1% 5539 16 AUACUUACUGACAGuCAGA 0.2%
7 7 AGACAGCGACCAAAAGAAU 99.1% 5540 16 AUACUUACUGAuAGGCAGA 0.3%
5503 7 AGACAGCGACCAAAAGgAU 0.3% 5541 16 AUgCUUACUGACAGCCAGA 0.1%
5504 7 AGACAGCGACCAAAgGAAU 0.1% 5542 16 AUACUUACCGACAGCCAGA 0.2%
5505 7 AGACACCGACCAAAAGAUU 0.1% 17 17 ACUGACAGCCAGACAGCGA 99.0%
5506 7 AGACgaCGAuCAAAAGAAU 0.1% 5543 17 ACUGACAGuCAGACAGCGA 0.2%
8 8 CCAGACAGCGACCAAAAGA 99.1% 5544 17 ACUGAuAGCCAGACAGCGA 0.3%
5507 8 CCAGACAGCGACCAAAAGg 0.3% 5545 17 ACcGACAGCCAGACAGCGA 0.2%
5508 8 CCAGACAGCGACCAAAgGA 0.1% 5546 17 ACUGACAGCCAGACgaCGA 0.1%
5509 8 uCAGACAGCGACCAAAAGA 0.2% 18 18 GCAUACUUACUGACAGCCA 99.0%
5510 8 CCAGACgaCGAuCAAAAGA 0.1% 5547 18 GGAUACUUACUGACAGuCA 0.2%
9 9 ACAGCGACCAAAAGAAUUC 99.1% 5548 18 GCAUACUUACUGAuAGCCA 0.3%
5511 9 ACAGCGACCAAAAGgAUUC 0.3% 5549 18 GCAUgCUUACUGACAGCCA 0.1%
5512 9 ACAGCGACCAAAgGAAUUC 0.1% 5550 18 aCAUACUUACUGACAGCCA 0.1%
5513 9 ACAGCGACCAAAAGAuUUU 0.1% 5551 18 GCAUACUUACCGACAGCCA 0.2%
5514 9 ACgaCGAUCAAAAGAAUUC 0.1% 19 19 AGCAUACUUACUGACAGCC 99.0%
10 10 UACUUACUGACAGCCAGAC 99.1% 5552 19 AGCAUACUUACUGACAGuC 0.2%
5515 10 UACUUACUGACAGuCAGAC 0.2% 5553 19 AGCAUACUUACUGAUAGCC 0.3%
5516 10 UACUUACUGAuAGCCAGAC 0.3% 5554 19 AGCAUGCUUACDGACAGCC 0.1%
5517 10 UgCUUACUGACAGCCAGAC 0.1% 5555 19 AaCAUACUUACDGACAGCC 0.1%
518 10 UACUUACcGACAGCCAGAC 0.2% 5556 19 AGCAUACUUACCGACAGCC 0.2%
11 11 CAGCGACCAAAAGAAUUCG 99.1% 20 20 UGACAGCCAGACAGCGACC 99.0%
5557 20 UGACAGuCAGACAGCGACC 0.2%
5558 20 UGAuAGCCAGACAGCGACC 0.3% 5604 28 UCUAaCAUACUUACUGACA 0.1%
5559 20 cGACAGCCAGACAGCGACC 0.2% 5605 28 UCUAGCAUACUUACcGACA 0.2%
5560 20 UGACAGCGAGACgaCGAuC 0.1% 29 29 CAAAAGAAUUCGGAUGGCC 98.6%
21 21 UACUGACAGCCAGACAGCG 99.0% 5606 29 CAAAAGgAUUCGGAUGGCC 0.2%
5561 21 UACUGACAGuCAGACAGCG 0.2% 5607 29 CAAAgGAAUUCGGAUGGCC 0.1%
5562 21 UACUGAuAGCCAGACAGCG 0.3% 5608 29 CAAAAGAAUUCGaAUGGCC 0.6%
5563 21 UACcGACAGCCAGACAGCG 0.2% 5609 29 CAAAAGAuUUCGGAUGGCC 0.1%
5564 21 UACUGACAGCCAGACgaCG 0.1% 5610 29 CAAAAGgAUUCGaAUGGCC 0.1%
22 22 UUACUGACAGCCAGACAGC 99.0% 30 30 AAAAGAAUUCGGAUGGCCA 98.6%
5565 22 UUACUGACAGuCAGACAGC 0.2% 5611 30 AAAAGgAUUCGGADGGCCA 0.2%
5566 22 UUACUGAuAGCCAGACAGC 0.3% 5612 30 AAAGGAAUUCGGAUGGCCA 0.1%
5567 22 UUACcGACAGCCAGACAGC 02% 5613 30 AAAAGAAUUCGaAUGGCCA 0.6%
5568 22 UUACUGACAGCCAGACgaC 0.1% 5614 30 AAAAGAuUUCGGAUGGCCA 0.1%
23 23 CUGACAGCCAGACAGCGAC 99.0% 5615 30 AAAAGgAUUCGaAUGGCCA 0.1%
5569 23 CUGACAGuCAGACAGCGAC 0.2% 31 31 GACCAAAAGAAUUCGGAUG 98.5%
5570 23 CUGAuAGCCAGACAGCGAC 0.3% 5616 31 GACCAAAAGgAUUCGGAUG 0.2%
5571 23 CcGACAGCCAGACAGCGAC 0.2% 5617 31 GACCAAAgGAAUUCGGAUG 0.1%
5572 23 CUGACAGCCAGACgaCGAu 0.1% 5618 31 GAuCAAAAGAAUUCGGAUG 0.1%
24 24 ACUCUAGCAUACUUACUGA 98.9% 5619 31 GACCAAAAGAAUUCGaAUG 0.6%
5573 24 ACUCUAGCAUgCUUACUGA 0.1% 5620 31 GACCAAAAGAuUUCGGAUG 0.1%
5574 24 ACUuUAGCAUACUUACUGA 0.2% 5621 31 GACCAAAAGgAUUCGaAUG 0.1%
5575 24 ACUaUAGCAUACUUACUGA 0.1% 32 32 CGACCAAAAGAAUUCGGAU 98.5%
5576 24 ACUCCAGCAUACUUACUGA 0.3% 5622 32 CGACCAAAAGgAUUCGGAU 0.2%
5577 24 ACUCUAaCAUACUUACUGA 0.1% 5623 32 CGACCAAAgGAAUUCGGAU 0.1%
5578 24 ACUCUAGCAUACUUACcGA 0.2% 5624 32 CGAUCAAAAGAAUUCGGAU 0.1%
25 25 UAGCAUACUUACUGACAGC 98.7% 5625 32 CGACCAAAAGAAUUCGaAU 0.6%
5579 25 UAGCAUACUUACUGACAGu 0.2% 5626 32 CGACCAAAAGAuUUCGGAU 0.1%
5580 25 UAGCAUACUUACUGAUAGC 0.3% 5627 32 CGACCAAAAGgAUUCGaAU 0.1%
5581 25 UAGCAUgCUUACUGACAGC 0.1% 33 33 AAAGAAUUCGGAUGGCCAU 9835%
5582 25 CAGCAUACUUACUGACAGC 0.3% 5628 33 AAAGgAUUCGGAUGGCCAU 0.2%
5583 25 UAaCAUACUUACUGACAGC 0.1% 5629 33 AAgGAAUUCGGAUGGCCAU 0.1%
5584 25 UAGCAUACUUACcGACAGC 0.2% 5630 33 AAAGAAUUCGaAUGGCCAU 0.6%
26 26 CUCUAGCAUACUUACUGAC 98.6% 5631 33 AAAGAAUUCGGAUGGCCAC 0.1%
5585 26 C0CUAGCAUACUUACUGAu 0.3% 5632 33 AAAGAuUUCGGAUGGCCAU 0.1%
5586 26 CUCUAGCAUgCUUACUGAC 0.1% 5633 33 AAAGgAUUCGaAUGGCCAU 0.1%
5587 26 CUuUAGCAUACUUACUGAC 0.2% 34 34 AGCGACCAAAAGAAUUCGG 98.5%
5588 26 CUaUAGCAUACUUACUGAC 0.1% 5634 34 AGCGACCAAAAGgAUUCGG 0.2%
5589 26 CUCcAGCAUACUUACUGAC 0.3% 5635 34 AGCGACCAAAgGAAUUCGG 0.1%
5590 26 CUCUAaCAUACUUACUGAC 0.1% 5636 34 AGCGACCAAAAGAAUUCGa 0.6%
5591 26 CUCUAGCAUACUUACcGAC. 0.2% 5637 34 AGCGACCAAAAGAuUUCGG 0.1%
27 27 CUAGCAUACUUACUGACAG 98.6% 5638 34 AGCGACCAAAAGgAUUCGa 0.1%
5592 27 CUAGCAUACUUACUGAuAG 0.3% 5639 34 gaCGAuCAAAAGAAUUCGG 0.1%
5593 27 CUAGCAUgCUUACUGACAG 0.1% 35 35 GCGACCAAAAGAAUUCGGA 98.5%
5594 27 uUAGCAUACUUACUGACAG 0.2% 5640 35 GCGACCAAAAGgAUUCGGA 0.2%
5595 27 aUAGCAUACUUACUGACAG 0.1% 5641 35 GCGACCAAAgGAAUUCGGA 0.1%
5596 27 CcAGCAUACUUACUGACAG 0.3% 5642 35 GCGACCAAAAGAAUUCGaA 0.6%
5597 27 CUAaCAUACUUACUGACAG 0.1% 5643 35 GCGACCAAAAGAuUUCGGA 0.1%
5598 27 CUAGCAUACUUACcGACAG 0.2% 5644 35 aCGAuCAAAAGAAUUCGGA 0.1%
28 28 UCUAGCAUACUUACUGACA 98.6% 5645 35 GCGACCAAAAGgAUUCGaA 0.1%
5599 28 UCUAGCAUACUUACUGAUA 0.3% 36 36 CCAAAAGAAUUCGGAUGGC 98.5%
5600 28 UCUAGCAUgCUUACUGACA 0.1% 5646 36 CCAAAAGgAUUCGGAUGGC 0.2%
5601 28 UuUAGCAUACUUACUGACA 0.2% 5647 36 CCAAAgGAAUUCGGAUGGC 0.1%
5602 28 UaUAGCAUACUUACUGACA 0.1% 5648 36 uCAAAAGAAUUCGGAUGGC 0.1%
5603 28 UCcAGCAUACUUACUGACA 0.3% 5649 36 CCAAAAGAAUUCGaAUGGC 0.6%
5650 36 CCAAAAGAuUUUCGGAUGG 0.1% 5696 44 AAUUCGGAUGGCCAUuAAU 0.22%
5651 36 CCAAAAGgAUUCGaAUGGC 0.1% 5697 44 gAUUCGGAUGGCCAUCAAU 0.2%
37 37 ACCAAAAGAAUUCGGAUGG 98.5% 5698 44 AAUUCGaAUGGCCAUCAAU 0.6%
5652 37 ACCAAAAGgAUUCGGAUGG 0.2% 5699 44 AAUUCGGAUGGCCAcCAAU 0.1%
5653 37 ACCAAAgGAAUUCGGAUGG 0.1% 5700 44 AAUUCGGAUGGCCAUCAAg 0.1%
5654 37 AUCAAAAGAAUUCGGAUGG 0.1% 5701 44 AuaUCGGAUGGCCAUCAAU 0.1%
5655 37 ACCAAAAGAAUUCGaAUGG 0.6% 5702 44 gAUUCGaAUGGCCAUCAAU 0.1%
5656 37 ACCAAAAGAuUUCGGAUGG 0.1% 45 45 GGGACUCUAGCAUACUUAC 98.1%
5657 37 ACCAAAAGgAUUCGaAUGG 0.1% 5703 45 GGGACUCUAGCAUgCUUAC 0.1%
38 38 GAAUUCGGAUGGCCAUCAA 98.4% 5704 45 GGGACUuUAGCAUACUUAC 0.2%
5658 38 GAAUUCGGAUGGCCAUUAA 0.2% 5705 45 GaGACUCUAGCAUACUUAC 0.4%
5659 38 GgAUUCGGAUGGCCAUCAA 0.2% 5706 45 GGaACUCUAGCAUACUUAC 0.6%
5660 38 GAAUUCGaAUGGCCAUCAA 0.6% 5707 45 GGGACUaUAGCAUACUUAC 0.1%
5661 38 GAAUUCGGAUGCCAcCCAA 0.1% 5708 45 GGGACUCcAGCAUACUUAC 0.3%
5662 38 GAuUUCGGAUGGCCAUCAA 0.1% 5709 45 GGGACUCUAaCAUACUUAC 0.1%
5663 38 GgAUUCGaAUGGCCAUCAA 0.1% 46 46 ACGGGACUCUAGCAUACUU 98.0%
39 39 UUCGGAUGGCCAUCAAUUA 98.3% 5710 46 ACGGGACUCUAGCAUgCUU 0.1%
5664 39 UUCGGAUGGCCAUuAAUUA 0.2% 5711 46 ACGGGACUuUAGCAUACUU 0.2%
5665 39 UUCGaAUGGCCAUCAAUUA 0.7% 5712 46 AaGGGACUCUAGCAUACUU 0.1%
5666 39 UUCGGAUGGCCAUCAAgUA 0.1% 5713 46 ACGaGACUCUAGCAUACUU 0.4%
5667 39 UUCGGAUGGCCAUCAAUag 0.1% 5714 46 ACGGAACUCUAGCAUACUU 0.6%
5668 39 UUCGGAUGGCCACCAAUgA 0.1% 5715 46 ACGGGACUaUAGCAUACUU 0.1%
40 40 AUUCGGAUGGCCAUCAAUU 98.3% 5716 46 ACGGGACUCCAGCAUACUU 0.3%
5669 40 AUUCGGAUGGCCAUuAAUU 0.2% 5717 46 ACGGGACUCUAaCAUACUU 0.1%
5670 40 AUUCGaAUGGCCAUCAAUU 0.7% 47 47 AAACGGGACUCUAGCAUAC 98.0%
5671 40 AUUCGGAUGGCCAUCAAgU 0.1% 5718 47 AAACGGGACUCUAGCAUgC 0.1%
5672 40 AUUCGGAUGGCCAUCAAUa 0.1% 5719 47 AAACGGGACUuUAGCAUAC 0.2%
5673 40 uUUCGGAUGGCCAUCAAUU 0.1% 5720 47 AAAaGGGACUCUAGCAUAC 0.1%
5674 40 AUUCGGAUGGGCCAcCAAUg 0.1% 5721 47 AAACGaGACUCUAGCAUAC 0.4%
41 41 GACUCUAGCAUACUUACUG 98.3% 5722 47 AAACGGaACUCUAGCAUAC 0.6%
5675 41 GACUCUAGCAUgCUUACUG 0.1% 5723 47 AAACGGGACUaUAGCAUAC 0.1%
5676 41 GACUuUAGCAUACUUACUG 0.2% 5724 47 AAACGGGACUCcAGCAUAC 0.3%
5677 41 aACUCUAGCAUACUUACUG 0.6% 5725 47 AAACGGGACUCUAaCAUAC 0.1%
5678 41 GACUaUAGCAUACUUACUG 0.1% 48 48 CGGGACUCUAGCAUACUUA 98.0%
5679 41 GACUCcAGCAUACUUACUG 0.3% 5726 48 CGGGACUCUAGCAUgCUUA 0.1%
5680 41 GACUCUAaCAUACUUACUG 0.1% 5727 48 CGGGACUuUAGCAUACUUA 0.2%
5681 41 GACUCUAGCAUACUUACcG 0.2% 5728 48 aGGGACUCUAGCAUACUUA 0.1%
42 42 AGAAUUCGGAUGGCCAUCA 98.3% 5729 48 CGaGACUCUAGCAUACUUA 0.4%
5682 42 AGAAUUCGGAUGGCCAUuA 0.2% 5730 48 CGGaACUCUAGCAUACUUA 0.6%
5683 42 AGgAUUCGGAUGGCCAUCA 0.2% 5731 48 GGGGACUaUAGCAUACUUA 0.1%
5684 42 gGAAUUCGGAUGGCCAUCA 0.1% 5732 48 CGGGACUCcAGCAUACUUA 0.3%
5685 42 AGAAUUCGaAUGGCCAUCA 0.6% 5733 48 CGGGACUCUAaCAUACUUA 0.1%
5686 42 AGAAUUCGGAUGGCCAcCA 0.1% 49 49 AACGGGACUCUAGCAUACU 98.0%
5687 42 AGAuUUCGGAUGGCCAUCA 0.1% 5734 49 AACGGGACUCUAGCAUgCU 0.1%
5688 42 AGgAUUUGaAUGGCCAUCA 0.1% 5735 49 AACGGGACUuUAGCAUACU 0.2%
43 43 AAGAAUUCGGAUGGCCAUC 98.3% 5736 49 AAaGGGACUCUAGCAUACU 0.1%
5689 43 AAGAAUUCGGAUGGCCAUU 0.2% 5737 49 AACGaGACUCUAGCAUACU 0.4%
5690 43 AAGgAUUCGGAUGGCGAUC 0.2% 5738 49 AACGGaACUCUAGCAUACU 0.6%
5691 43 AgGAAUUCGGAUGGCCAUC 0.1% 5739 49 AACGGGACUaUAGCAUACU 0.1%
5692 43 AAGAAUUCGaAUGGCCAUC 0.6% 5740 49 AACGGGACUCcAGCAUACU 0.3%
5693 43 AAGAAUUCGGAUGGCCACC 0.1% 5741 49 AACGGGACUCUAaCAUACU 0.1%
5694 43 AAGAuUUCGGAUGGCCAUC 0.1% 50 50 GGACUCUAGCAUACUUACU 97.6%
5695 43 AAGgADDUGaAUGGCCAUC 0.1% 5742 50 GGACUCUAGCAUgCUUACU 0.2%
44 44 AAUUCGGAUGGCCAUCAAU 98.3% 5743 50 GGACUuUAGCAUACUUACU 0.2%
5744 50 aGACUCUAGCAUACUUACU 0.4% 5787 61 GAAACGAAAACGGaACUCU 0.5%
5745 50 GaACUCUAGCAUACUUACU 0.6% 5788 61 GAAACGAAAACGGGACUaU 0.1%
5746 50 GGACUaUAGCAUACUUACU 0.1% 5789 61 GAAACGAAAACGGGACUCC 0.3%
5747 50 GGACUCcAGCAUACUUACU 0.3% 5790 61 GAAACGgAAACGaGACUCU 0.1%
5748 50 GGACUCUAaCAUACUUACU 0.1% 5791 61 GAAACGgAAACGGaACUCU 0.1%
5749 50 GGACUCUAGCAUACUUACc 0.2% 62 62 AAACGAAAACGGGACUCUA 95.5%
51 51 ACGAAACGAAAACGGGACU 95.9% 5792 62 AAACGgAAACGGGACUCUA 2.7%
5750 51 AUGAAACGgAAACGGGACU 2.9% 5793 62 AAACGgAAACGGGACUuUA 0.2%
5751 51 AUGAAACGAAAAaGGGACU 0.1% 5794 62 aAACGAAAAaGGGACUCUA 0.1%
5752 51 AUGAAACGAAAACGaGACU 0.3% 5795 62 AAACGAAAACGaGACUCUA 0.3%
5753 51 AUGAAACGAAAACGGaACU 0.5% 5796 62 AAACGAAAACGGaACUCUA 0.5%
5754 51 AUGAAACGgAAACGaGACU 0.1% 5797 62 AAACGAAAACGGGACUaUA 0.1%
5755 51 AUGAAACGgAAACGGaACU 0.1% 5798 62 AAACGAAAACGGGACUCcA 0.3%
52 52 GAAAUGGAUGAUGGCAAUG 95.8% 5799 62 AAACGgAAACGaGACUCUA 0.1%
5756 52 GAAAUGGAUGAUGGCgAUG 4.1% 5800 62 AAACGgAAACGGaACUCUA 0.1%
5757 52 GAAGUGGAUGAUGGCAAUG 0.1% 63 63 AACGAAAACGGGACUCUAG 95.4%
53 53 UGGAUGAUGGCAAUGAAAU 95.8% 5801 63 AACGgAAACGGGACUCUAG 27%
5758 53 UGGAUGAUGGCAAUGAgAU 0.1% 5802 63 AACGgAAACGGGACUuUAG 0.2%
5759 53 UGGAUGAUGGCgAUGAAAU 4.1% 5803 63 AACGAAAAaGGGACUCUAG 0.1%
54 54 UGAAAUGGAUGAUGGCAAU 95.8% 5804 63 AACGAAAACGaGACUCUAG 0.3%
5760 54 UGAAAUGGAUGAUGGCgAU 4.1% 5805 63 AACGAAAACGGaACUCUAG 0.5%
5761 54 UGAAgUGGAUGAUGGCAAU 0.1% 5806 63 AACGAAAACGGGACUaUAG 0.1%
55 55 GGAUGAUGGCAAUGAAAUA 95.8% 5807 63 AACGAAAACGGGACUCCAG 0.3%
5762 55 GGAUGAUGGCAAUGAgAUA 0.1% 5808 63 AACGAAAACGGGACUCUAa 0.1%
5763 55 GGAUGAUGGCgAUGAAAUA 4.1% 5809 63 AACGgAAACGaGACUCUAG 0.1%
56 56 UGAAACGAAAACGGGACUC 95.8% 5810 63 AACGgAAACGGaACUCUAG 0.1%
5764 56 UGAAACGgAAACGGGACUC 2.7% 64 64 GAAAACGGGACUCUAGCAU 95.4%
5765 56 UGAAACGgAAACGGGACUu 0.2% 5811 64 GgAAACGGGACUCUAGCAU 2.7%
5766 56 UGAAACGAAAAaGGGACUC 0.1% 5812 64 GgAAACGGGACUuUAGCAU 0.2%
5767 56 UGAAACGAAAACGaGACUC 0.3% 5813 64 GAAAAaGGgACUCUAGCAU 0.1%
5768 56 UGAAACGAAAACGGaACUC 0.5% 5814 64 GAAAACGaGACUCUAGCAU 0.3%
5769 56 UGAAACGAAAACGGGACUa 0.1% 5815 64 GAAAACGGaACUCUAGCAU 0.55%
5770 56 UGAAACGgAAACGaGACUC 0.1% 5816 64 GAAAACGGGACUaUAGCAU 0.1%
5771 56 UGAAACGgAAACGGaACUC 0.1% 5817 64 GAAAACGGGACUCcAGCAU 0.3%
57 57 AAAUGGAUGAUGGCAAUGA 95.8% 5818 64 GAAAACGGGACUCUAaCAU 0.1%
5772 57 AAAUGGAUGAUGGCgAUGA 4.1% 5819 64 GgAAACGaGACUCUAGCAU 0.1%
5773 57 AAgUGGAUGAUGGCAAUGA 0.1% 5820 64 GgAAACGGaACUCUAGCAU 0.1%
58 58 AUGGAUGAUGGCAAUGAAA 95.7% 65 65 ACGAAAACGGGACUCUAGG 95.4%
5774 58 AUGGAUGAUGGCAAUGAgA 0.1% 5821 65 ACGgAAACGGGACUCUAGC 2.7%
5775 58 AUGGAUGAUGGCgAUGAAA 4.1% 5822 65 ACGgAAACGGGACUuUAGC 0.2%
5776 58 gUGGAUGAUGGCAAUGAAA 0.1% 5823 65 ACGAAAAaGGGACUCUAGC 0.1%
59 59 AAUGGAUGAUGGCAAUGAA 95.7% 5824 65 ACGAAAACGaGACUCUAGC 0.3%
5777 59 AAUGGAUGAUGGCAAUGAg 0.1% 5825 65 ACGAAAACGGaACUCUAGC 0.5%
5778 59 AAUGGAUGAUGGCgAUGAA 4.1% 5826 65 ACGAAAACGGGACUaUAGC 0.1%
5779 59 AgUGGAUGAUGGCAAUGAA 0.1% 5827 65 ACGAAAACGGGACUCcAGC 0.3%
60 60 AUGAAAUGGAUCAUGGCAA 95.7% 5828 65 ACGAAAACGGGACUCUAaC 0.1%
5780 60 AUGAAAUGGAUGAUGGCgA 4.1% 5829 65 ACGgAAACGaGACUCUAGC 0.1%
5781 60 AUGAAgUGGAUGAUGGCAA 0.1% 5830 65 ACGgAAACGGaACUCUAGC 0.1%
5782 60 gUGAAAUGGAUGAUGGCAA 0.1% 66 66 CGAAAACGGGACUCUAGCA 95.4%
61 61 GAAACGAAAACGGGACUCU 95.5% 5831 66 CGgAAACGGGACUCUAGCA 2.7%
5783 61 GAAACGgAAACGGGACUCU 2.7% 5832 66 CGgAAACGGGACUuUAGCA 0.2%
5784 61 GAAACGgAAACGGGACUUU 0.2% 5833 66 CGAAAAaGGGACUCUAGCA 0.1%
5785 61 GAAACGAAAAaGGGACUCU 0.1% 5834 66 CGAAAACGaGACUCUUAGCA 0.3%
5786 61 GAAACGAAAACGaGACUCU 0.3% 5835 66 CGAAAACGGaAACUCUAGCA 0.5%
5836 66 CGAAAACGGGACUaUAGCA 0.1% 5885 71 GGUUAAAACAcGGAACCUU 0.1%
5837 66 CGAAAACGGGACUCcAGCA 0.3% 5886 71 GGcUAAAgCAUGGAACCUU 0.2%
5838 66 CGAAAACGGGACUCUAaCA 0.1% 5887 71 GGUUAAAgCAcGGAACCUU 0.1%
5839 66 CGgAAACGaGACUCUAGCA 0.1% 5888 71 GaUUAAAACAcGGAACCUU 2.2%
5840 66 CGgAAACGgaACUCUAGCA 0.1% 5889 71 GaUUAAAACAcGGgACCUU 0.1%
67 67 AAAACGGGACUCUAGCAUA 95.3% 72 72 AGGUUAAAACAUGGAACCU 94.8%
5841 67 AAAACGGGACUCUAGCAUg 0.1% 5890 72 AGGUUAAAACAUGGAACuU 0.1%
5842 67 gAAACGGGACUCUAGCAUA 2.7% 5891 72 AGGUUAAAACAUGGgACCU 1.2%
5843 67 gAAACGGGACUUUAGCAUA 0.2% 5892 72 AGGUUgAAACAUGGAACCU 0.3%
5844 67 AAAAaGGGACUCUAGCAUA 0.1% 5893 72 AGaUUAAAACAUGGAACCU 0.4%
5845 67 AAAACGaGACUCUAGCAUA 0.3% 5894 72 AGGUUAAAAaAUGGAACCU 0.4%
5846 67 AAAACGGaACUCUAGCAUA 0.5% 5895 72 AGGUUAAAACAcGGAACCU 0.1%
5847 67 AAAACGGGACUaUAGCAUA 0.1% 5896 72 AGGcUAAAgCAUGGAACCU 0.2%
5848 67 AAAACGGGACUCCAGCAUA 0.3% 5897 72 AGGUUAAAgCAcGGAACCU 0.1%
5849 67 AAAACGGGACUCUAaCAUA 0.1% 5898 72 AGaUUAAAACAcGGAACCU 2.2%
5850 67 gAAACGaGACUCUAGCAUA 0.1% 5899 72 AGaUUAAAACAcGGgACCU 0.1%
5851 67 gAAACGGaACUCUAGCAUA 0.1% 73 73 CUCGCACUCGCGAGAUACU 94.5%
68 68 GAAAGGUUAAAACAUGGAA 94.9% 5900 73 CUCGCACUCGCGAGAUAuU 1.4%
5852 68 GAAAGGUUAAAACAUGGgA 1.2% 5901 73 CUCGCACUCGuGAGAUACU 0.1%
5853 68 GAAAGGUUgAAACAUGGAA 0.3% 5902 73 CUCGCAuUCGCGAGAUACU 0.1%
5854 68 GAAAGaUUAAAACAUGGAA 0.4% 5903 73 uUCGCACUCGCGAGAUACU 0.1%
5855 68 GAAAGGUUAAAAaAUGGAA 0.4% 5904 73 CcCGCACUCGCGAGAUACU 2.0%
5856 68 GAAAGGUUAAAACAcGGAA 0.1% 5905 73 CUCGCACaCGCGAGAUACU 0.6%
5857 68 GAAAGGcUAAAgCAUGGAA 0.2% 5906 73 CUCGCACcCGCGAGAUACU 0.5%
5858 68 GAAAGGUUAAAgCACGGAA 0.1% 5907 73 CUCGCACUCGCGAaAUACU 0.1%
5859 68 GAAAGaUUAAAACACGGAA 2.2% 5908 73 CUCGCACUCGCGgaAUACU 0.1%
5860 68 GAAAGaUUAAAACAcGGgA 0.1% 5909 73 UUCGCACaCGCGAGAUACU 0.1%
69 69 AAAGGUUAAAACAUGGAAC 94.9% 5910 73 CcCGCACgCGCGAGAUACU 0.2%
5861 69 AAAGGUUAAAACAUGGgAC 1.2% 5911 73 CUCGCACUguCGAGAUACU 0.1%
5862 69 AAAGGUUgAAACAUGGAAC 0.3% 74 74 UCUCGCACUCGCGAGAUAC 94.5%
5863 69 AAAGaUUAAAACAUGGAAC 0.4% 5912 74 UCUCGCACUCGCGAGAUAu 1.4%
5864 69 AAAGGUUAAAAaAUGGAAC 0.4% 5913 74 UCUCGCACUCGuGAGAUAC 0.1%
5865 69 AAAGGUUAAAACACGGAAC 0.1% 5914 74 UCUCGCAUUCGCGAGAUAC 0.1%
5866 69 AAAGGcUAAAgCAUGGAAC 0.2% 5915 74 UuUCGCACUCGCGAGAUAC 0.1%
5867 69 AAAGGUUAAAgCAcGGAAC 0.1% 5916 74 UCcCGCACUCGCGAGAUAC 2.0%
5868 69 AAAGaUUAAAACAcGGAAC 2.2% 5917 74 UCUCGCACaCGCGAGAUAC 0.6%
5869 69 AAAGaUUAAAACAcGGgAC 0.1% 5918 74 UCUCGCACcCGCGAGAUAC 0.5%
70 70 AAGGUUAAAACAUGGAACC 94.8% 5919 74 UCUCGCACUCGCGAaAUAC 0.1%
5870 70 AAGGUUAAAACAUGGAACu 0.1% 5920 74 UCUCGCACUCGCGgaAUAC 0.1%
5871 70 AAGGUUAAAACAUGGgACC 1.2% 5921 74 UuUCGCACaCGCGAGAUAC 0.1%
5872 70 AAGGUUgAAACAUGGAACC 0.3% 5922 74 UCcCGCACgCGCGAGAUAC 0.2%
5873 70 AAGaUUAAAACAUGGAACC 0.4% 5923 74 UCUCGCACUguCGAGAUAC 0.1%
5874 70 AAGGUUAAAAaAUGGAACC 0.4% 75 75 UAAAAGCAGUUAGAGGUGA 94.3%
5875 70 AAGGUAAAACACGGGAACC 0.1% 5924 75 UAAAAGCUGUUAGAGGUGA 0.3%
5876 70 AAGGcUAAAgCAUGGAACC 0.2% 5925 75 UgAAAGCAGUUAGAGGUGA 0.2%
5877 70 AAGGUUAAAgCAcGGAACC 0.1% 5926 75 UAAAgGCAGUUAGgGGUGA 0.1%
5879 70 AAGaUUAAAACACgGAACC 2.2% 5927 75 UAAAAGCAGUcAGAGGUgA 0.4%
5879 70 AAGaUUAAAACAcGGgACC 0.1% 5928 75 UAAAAGCAGUUAGAGGaGA 0.7%
71 71 GGUUAAAACAUGGAACCUU 94.8% 5929 75 UAAAAuCAgUUAGAGGUGA 0.1%
5880 71 GGUUAAACAUGGGAACuUU 0.1% 5930 75 UAAAAGCAGUcAGgGGUGA 0.1%
5881 71 GGUUAAAACAUGGgACCUU 1.2% 5931 75 UAAAgGCAGUccGAGGUGA 2.2%
5882 71 GGUUgAAACAUGGAACCUU 0.3% 76 76 UCGGAUGGCCAUCAAUUAA 94.2%
5883 71 GaUUAAAACAUGGAACCUU 0.4% 5932 76 UCGGAUGGCcAUCAAUUAg 3.9%
5884 71 GGUUAAAAaAUGGAACCUU 0.4% 5933 76 UCGGAUGGCCAUuAAUUAA 0.2%
5934 76 UCGaAUGGCCAUCAAUUAA 0.7% 5979 85 ACUUAGGgUGAAAUGGAUG 0.1%
5935 76 UCGGAUGGCCAUCAAgUAA 0.1% 5980 85 ACUcAGGAUGAAAUGGAUG 0.1%
5936 76 UCGGAUGGCCAUCAAUagg 0.1% 5981 85 ACUUAGaAUGAAAUGGAUG 2.1%
5937 76 UCGGAUGGCCAcCAAUgAg 0.1% 5982 85 uCUUAGaAUGAAAUGGAUG 2.3%
77 77 AGGAUGAAAUGGAUGAUGG 94.0% 86 86 GUUGCAUACAUGUUAGAGA 93.8%
5938 77 AGGAUGAAgUGGAUGAUGG 0.1% 5983 86 GUUGCAUACAUGUUgGAGA 0.3%
5939 77 AGGgUGAAAUGGAUGAUGG 0.1% 5984 86 GUUGCgUACAUGUUAGAGA 1.5%
5940 77 AGaAUGAAAUGGAUGAUGG 5.8% 5985 86 aUUGCAUACAUGUUAGAGA 0.1%
78 78 GGAUGAAAUGGAUGAUGGC 94.0% 5986 86 GUcGCAUACAUGUUAGAGA 0.3%
5941 78 GGAUGAAgUGGAUGAUGGC 0.1% 5987 86 GUUGCAUACAUGUUAGAaA 0.1%
5942 78 GGgUGAAAUGGAUGAUGGC 0.1% 5988 86 GUgGCAUACAUGUUgGAGA 0.2%
5943 78 GaAUGAAAUGGAUGAgGGC 5.8% 5989 86 GUUGCAUACAUGUUgGAaA 1.2%
79 79 UUAGGAUGAAAUGGAUGAU 93.9% 5990 86 GUgGCAUACAUGUUggAaA 0.3%
5944 79 UUAGGAUGAAgUGGAUGAU 0.1% 87 87 UAAAACAUGGAACCUUUGG 93.8%
5945 79 UUAGGgUGAAAUGGAUGAU 0.1% 5991 87 UAAAACAUGGAACuUUUGG 0.1%
5946 79 UcAGGAUGAAAUGGAUGAU 0.1% 5992 87 UAAAACAUGGgACCUUUGG 1.2%
5947 79 UUAGaAUGAAAUGGAUGAU 4.5% 5993 87 UAAAgCAUGGAACCUUUGG 0.2%
5948 79 UcAGaAgGAAAUGGAUGAU 1.3% 5994 87 UgAAACAUGGAACCUUUGG 0.3%
80 80 AUGGUUGCAUACAUGUUAG 93.9% 5995 87 UAAAAaAUGGAACCUUUGG 0.4%
5949 80 AUGGUUGCAUACAUGUUgG 1.5% 5996 87 UAAAACAcGGAACCUUUGG 2.2%
5950 80 AUGGUUGCgUACAUGUUAG 1.5% 5997 87 UAAAACAUGGAACCUUcGG 1.2%
5951 80 AUGaUUGCAUACAUGUUAG 0.1% 5998 87 UAAAACAUGGAACCUUnGG 0.1%
5952 80 AUGGUcGCAUACAUGUUAG 0.3% 5999 87 UAAAACAUGGAACCUUUaG 0.1%
5953 80 AUGGUgGCAUACAUGUUgG 0.5% 6000 87 UAAAACAcGGgACCUUUGG 0.1%
5954 80 AUGGUgGCAUAuAUGUUgG 2.0% 6001 87 UAAAgCACGGAACCUUUGG 0.1%
81 81 UAGGAUGAAAUGGAUGAUG 93.9% 6002 87 UAAAACAcGGAACCUUcGG 0.1%
5955 81 UAGGAUGAAgUGGAUGAUG 0.1% 88 88 UUAAAACAUGGAACCUUUG 93.8%
5956 81 UAGGgUGAAAUGGAUGAUG 0.1% 6003 88 UUAAAACAUGGAACuUUUG 0.1%
5957 81 UAGGAUGAAAUGGAUGAUG 0.1% 6004 88 UUAAAACAUGGgACCUUUG 1.2%
5958 81 UAGaAUGAAAUGGAUGAUG 4.5% 6005 88 UUgAAACAUGGAACCUUUG 0.3%
5959 81 cAGaAUGAAAUGGAUGAUG 1.3% 6006 88 UUAAAAaAUGGAACCUUUG 0.4%
82 82 UGGUUGCAUACAUGUUAGA 93.9% 6007 88 UUAAAACAcGGAACCUUUG 2.2%
5960 82 UGGUUGCAUACAUGUUgGA 1.5% 6008 88 UUAAAACAUGGAACCUUcG 1.2%
5961 82 UGGUUGCgUACAUGUUAGA 1.5% 6009 88 UUAAAACAUGGAACCUUnG 0.1%
5962 82 UGaUUGCAUACAUGUUAGA 0.1% 6010 88 UUAAAACAUGGAACCUUUa 0.1%
5963 82 UGgUcGCAUACAUGUUAGA 0.3% 6011 88 UUAAAgCAUGGAACCUUUG 0.2%
5964 82 UGGggGCAUACAUGUUgGA 0.5% 6012 88 UUAAAACAcGGgACCUUUG 0.1%
5965 82 UGGUgGCAUAuAUGUUgGA 2.1% 6013 88 UUAAAgCAcGGAACCUUUG 0.1%
83 83 CUUAGGAUGAAAUGGAUGA 93.9% 6014 88 UUAAAACAcGGAACCUUcG 0.1%
5966 83 CUUAGGAUGAAgUGGAUGA 0.1% 89 89 GGUUGCAUACAUGUUAGAG 93.8%
5967 83 CUUAGGgUGAAAUGGAUGA 0.1% 6015 89 GGUUGCAUACAUGUUgGAG 0.3%
5968 83 CUcAGGAUGAAAUGGAUGA 0.1% 6016 89 GGUUGCgUACAUGUUAGAG 1.5%
5969 83 CUUAGaAUGAAAUGGAUGA 4.5% 6017 89 GaUUGCAUACAUGUUAGAG 0.1%
5970 83 CUcAGaAUGAAAUGGAUGA 1.3% 6018 89 GGUcGCAUACAUGUUAGAG 0.3%
84 84 UUGCAUACAUGUUAGAGAG 93.9% 6019 89 GGUUGCAUACAUGUUAGAa 0.1%
5971 84 UUGCAUACAUGUUgGAGAG 0.3% 6020 89 GGUgGCAUACAUGUUgGAG 0.2%
5972 84 UUGCgUACAUGUUAGAGAG 1.5% 6021 89 GGUUGCAUACAUGUUGGAa 1.2%
5973 84 UcGCAUACAUGUUAGAGAG 0.3% 6022 89 GGUgGCAUACAUGUUgGAa 0.3%
5974 84 UUGCAUACAUGUUAGAaAG 0.1% 90 90 UGAUGGUUGCAUACAUGUU 93.7%
5975 84 UgGCAUACAUGUUgGAGAG 0.2% 6023 90 UGAUGGUUGCgUACAUGUU 1.5%
5976 84 UUGCAUACAUGUUgGAaAG 1.2% 6024 90 UaAUGGUUGCAUACAUGUU 1.7%
5977 84 UgGCAUACAUGUUgGAaAG 0.3% 6025 90 UGAUGaUUGCAUACAUGUU 0.1%
85 85 ACUUAGGAUGAAAUGGAUG 93.9% 6026 90 UGAUGGUcGCAUACAUGUU 0.3%
5978 85 ACUUAGGAUGAAgUGGAUG 0.1% 6027 90 UGAUGGUgGCAUACAUGUU 0.1%
6028 90 UaAUGGUgGCAUACAUGUU 0.4% 6075 97 UCACUUAGGAUGAAgUGGA 0.1%
6029 90 UaAUGGUgGCAUauAUGUU 2.0% 6076 97 UCACUUAGGgUGAAAUGGA 0.1%
91 91 AUGAGAAUACUUGUAAGGG 93.7% 6077 97 UuACUUAGGAUGAAAUGGA 0.2%
6030 91 AUGAGAAUACUUGUgAGGG 0.2% 6078 97 gCACUUAGGAUGAAAUGGA 0.4%
6031 91 AUGAGAAUACUcGUAAGGG 1.3% 6079 97 UCACUcAGGAUGAAAUGGA 0.1%
6032 91 AUGAGAAUACUUGUAAGaG 2.6% 6080 97 UCACUUAGaAUGAAAUGGA 2.1%
6033 91 AUGAGAAUACUUGUgAGaG 2.0% 98 98 AACAUGGAACCUUUGGCCC 93.1%
6034 91 AUGAcAAUACUUGUgAGaG 0.1% 6081 98 AACAUGGAACCUUUGGuCC 1.1%
92 92 UGAGAAUACUUGUAAGGGG 93.7% 6082 98 AACAUGGAACUUUUGGCCC 0.1%
6035 92 UGAGAAUACUUGUgAGGGG 0.2% 6083 98 AACAUGGgACCUUUGGCCC 1.1%
6036 92 UGAGAAUACUcGUAAGGGG 1.3% 6084 98 AgCAUGGAACCUUUGGCCC 0.2%
6037 92 UGAGAAUACUUGUAAGaGG 2.6% 6085 98 AACAUGGgACCUUUGGuCC 0.1%
6038 92 UGAGAAUACUUGUgAGaGG 2.0% 6086 98 AAaAUGGAACCUUUGGCCC 0.4%
6039 92 UGAcAAUACUUGUgAGaGG 0.1% 6087 98 AACAcGGAACCUUUGGCCC 2.2%
93 93 CACUUAGGAUGAAAUGGAU 93.7% 6088 98 AACAUGGAACCUUnGGCCC 0.1%
6040 93 CACUUAGGAUGAAgUGGAU 0.1% 6089 98 AACAUGGAACCUUUaGCCC 0.1%
6041 93 CACUUAGGgUGAAAUGGAU 0.1% 6090 98 AACAcGGgACCUUUGGCCC 0.1%
6042 93 UACUUAGGAUGAAAUGGAU 0.2% 6091 98 AACAUGGAACCUUcGGuCC 1.2%
6043 93 CACUcAGGAUGAAAUGGAU 0.1% 6092 98 AgCAcGGAACCUUUGGCCC 0.1%
6044 93 CACUUAGaAUGAAAUGGAU 2.1% 6093 98 AACAcGGAACCUUcGGCCC 0.1%
6045 93 CuCUUAGaAUGAAAUGGAU 2.3% 99 99 AAACAUGGAACCUUUGGCC 93.1%
94 94 GUUAAAACAUGGAACCUUU 93.7% 6094 99 AAACAUGGAACCUUUGGuC 1.1%
6046 94 GUUAAAACAUGGAACUUUU 0.1% 6095 99 AAACAUGGAACuUUUGGCC 0.1%
6047 94 GUUAAAACAUGGgACCUUU 1.2% 6096 99 AAACAUGGgACCUUUGGCC 1.1%
6048 94 GUUgAAACAUGGAACCUUU 0.3% 6097 99 AAgCAUGGAACCUUUGGCC 0.2%
6049 94 aUUAAAACAUGGAACCUUU 0.2% 6098 99 AAACAUGGgACCUUUGGUC 0.1%
6050 94 GUUAAAAaAUGGAACCUUU 0.4% 6099 99 AAAaAUGGAACCUUUGGCC 0.4%
6051 94 GUUAAAACAcGGAACCUUU 0.1% 6100 99 AAACAcGGAACCUUUGGCC 2.2%
6052 94 GUUAAAACAUGGAACCUUc 1.0% 6101 99 AAACAUGGAACCUUnGGCC 0.1%
6053 94 GUUAAAACAUGGAACCUUn 0.1% 6102 99 AAACAUGGAACCUUUaGCC 0.1%
6054 94 GcUAAAgCAUGGAACCUUU 0.2% 6103 99 AAACAcGGgACCUUUGGCC 0.1%
6055 94 GUUAAAgCAcGGAACCUUU 0.1% 6104 99 AAACAUGGAACCUUcGGUC 1.2%
6056 94 aUUAAAACAcGGAACCUUU 2.1% 6105 99 AAgCACGGAACCUUUGGCC 0.1%
6057 94 aUUAAAACAUGGAACCUUc 0.2% 6106 99 AAACAcGGAACUUcGGGCC 0.1%
6058 94 aUUAAAACAcGGgACCUUU 0.1% 100 100 CAAGCUGUGGAUAUAUGCA 92.9%
95 95 UUGAUGGUUGCAUACAUGU 93.5% 6107 100 CAAGCUGUGGAUAUAUGuA 0.1%
6059 95 UUGAUGGUUGCgUACAUGU 1.5% 6108 100 CAgGCUGUGGAUAUAUGCA 0.2%
6060 95 cUGAUGGUUGCAUACAUGU 0.2% 6109 100 CAAGCaGUGGAUAUAUGCA 0.1%
6061 95 UUaAUGGUUGCAUACAUGU 1.7% 6110 100 CAAGCcGUGGAUAUAUGCA 0.5%
6062 95 UUGAUGaUUGCAUACAUGU 0.1% 6111 100 CAAGCUGUaGAUAUAUGCA 2.8%
6063 95 UUGAUGGUcGCAUACAUGU 0.3% 6112 100 CAAGCUGUGaAUAUAUGCA 0.1%
6064 95 cUGAUGGUgGCAUACAUGU 0.1% 6113 100 CAAGCUGUGGAaAUAUGCA 0.2%
6065 95 UUaAUGGUgGCAUACAUGU 0.4% 6114 100 CAAGCUGUGGACAUAUGCA 2.6%
6066 95 UUaAUGGUgGCAUAuAUGU 2.0% 6115 100 CAAGCcGUGGAUAUAUGuA 0.1%
96 96 GAUGGUUGCAUACAUGUUA 93.4% 6116 100 CAAGCcGUGGgUAUAUGCA 0.1%
6067 96 GAUGGUUGCAUACAUGUUg 0.3% 6117 100 CAAGCaGUaGAUAUAUGCA 0.2%
6068 96 GAUGGUUGCgUACAUGUUA 1.5% 6118 100 CAAGCCGUGGAUAUuUGCA 0.1%
6069 96 aAUGGUUGCAUACAUGUUA 0.5% 101 101 AAGCUGUGGAUAUAUGCAA 92.9%
6070 96 GAUGaUUGCAUACAUGUUA 0.1% 6119 101 AAGCUGUGGAUAUAUGuAA 0.1%
6071 96 GAUGGUcGCAUACAUGUUA 0.3% 6120 101 AgGCUGUGGAUAUAUGCAA 0.2%
6072 96 aAUGGUUGCaUACAUGUUg 1.2% 6121 101 AAGCaGUGGAUAUAUGCAA 0.1%
6073 96 GAUGGUgGCAUACAUGUUG 0.1% 6122 101 AAGCCGUGGAUAUAUGCAA 0.5%
6074 96 aAUGGUgGCAUACAUGUUg 0.4% 6123 101 AAGCUGUaGAUAUAUGCAA 2.8%
97 97 UCACUUAGGAUGAAAUGGA 93.3% 6124 101 AAGCUGUGaAUAUAUGCAA 0.1%
6125 101 AAGCUGUGGAaAUAUGCAA 0.2% 6174 106 GgUGAAAUGGAUGAUGGCA 0.1%
6126 101 AAGCUGUGGAcAUAUGCAA 2.6% 6175 106 aAUGAAAUGGAUGAUGGCA 3.4%
6127 101 AAGCcGUGGAUAUAUGuAA 0.1% 6176 106 aAUGAAAUGGAUGAUGGCg 2.3%
6128 101 AAGCcGUGGgUAUAUGCAA 0.1% 107 107 AACAAGCUGUGGAUAUAUG 91.3%
6129 101 AAGCaGUaGAUAUAUGCAA 0.2% 6177 107 AACAgGCUGUGGAUAUAUG 0.2%
6130 101 AAGCcGUGGAUAUuUGCAA 0.1% 6178 107 AgCAAGCUGUGGAUAUAUG 1.7%
102 102 AAAACAUGGAACCUUUGGC 92.8% 6179 107 AACAAGCaGUGGAUAUAUG 0.1%
6131 102 AAAACAUGGAACCUUUGGu 1.1% 6180 107 AACAAGCcGUGGAUAUAUG 0.4%
6132 102 AAAACAUGGAACuUUUGGC 0.1% 6181 107 AACAAGCUGUaGAUAUAUG 0.3%
6133 102 AAAACAUGGgACCUUUGGC 1.1% 6182 107 AACAAGCUGUGGAcAUAUG 2.6%
6134 102 AAAgCAUGGAACCUUUGGC 0.2% 6183 107 AgCAAGCcGUGGAUAUAUG 0.2%
6135 102 gAAACAUGGAACCUUUGGC 0.3% 6184 107 AgCAAGCUGUaGAUAUAUG 2.5%
6136 102 AAAACAUGGgACCUUUGGu 0.1% 6185 107 AgCAAGCUGUGaAUAUAUG 0.1%
6137 102 AAAAaAUGGAACCUUUGGC 0.4% 6186 107 AgCAAGCUGUGGAaAUAUG 0.2%
6138 102 AAAACAcGGAACCUUUGGC 2.2% 6187 107 AgCAAGCcGUGGgUAUAUG 0.1%
6139 102 AAAACAUGGAACCUUnGGC 0.1% 6188 107 AACAAGCaGUaGAUAUAUG 0.2%
6140 102 AAAACAUGGAACCUUUaGC 0.1% 6189 107 AgCAAGCcGUGGAUAUuUG 0.1%
6141 102 AAAACAcGGgACCUUUGGC 0.1% 108 108 GAACAAGCUGUGGAUAUAU 91.3%
6142 102 AAAACAUGGAACCUUcGGu 1.2% 6190 108 GAACAgGCUGUGGAUAUAU 0.2%
6143 102 AAAgCAcGGAACCUUUGGC 0.1% 6191 108 GAgCAAGCUGUGGAUAUAU 1.7%
6144 102 AAAACAcGGAACCUUcGGC 0.1% 6192 108 GAACAAGCaGUGGAUAUAU 0.1%
103 103 GUAAUGAAACGAAAACGGG 92.6% 6193 108 GAACAAGCcGUGGAUAUAU 0.4%
6145 103 GUAAUGAAACGgAAACGGG 2.7% 6194 108 GAACAAGCUGUaGAUAUAU 0.3%
6146 103 GUgAUGAAACGAAAACGGG 3.3% 6195 108 GAACAAGCUGUGGAcAUAU 2.6%
6147 103 GUgAUGAAACGgAAACGGG 0.2% 6196 108 GAgCAAGCcGUGGAUAUAU 0.2%
6148 103 GUAAUGAAACGAAAAaGGG 0.1% 6197 108 GAgCAAGCUGUaGAUAUAU 2.5%
6149 103 GUAAUGAAACGAAAACGaG 0.3% 6198 108 GAgCAAGCUGUGaAUAUAU 0.1%
6150 103 GUAAUGAAACGAAAACGGa 0.4% 6199 108 GAgCAAGCUGUGGAaAUAU 0.2%
6151 103 GUAAUGAAACGgAAACGaG 0.1% 6200 108 GAgCAAGCcGUGGgUAUAU 0.1%
6152 103 GUAAUGAAACGgAAACGGa 0.1% 6201 108 GAACAAGCaGUaGAUAUAU 0.2%
6153 103 GUgAUGAAACGAAAACGGa 0.1% 6202 108 GAgCAAGCcGUGGAUAUuU 0.1%
104 104 UAAUGAAACGAAAACGGGA 92.6% 109 109 ACAAGCUGUGGAUAUAUGC 91.2%
6154 104 UAAUGAAACGgAAACGGGA 2.7% 6203 109 ACAAGCUGUGGAUAUAUGu 0.1%
6155 104 UgAUGAAACGAAAACGGGA 3.3% 6204 109 ACAgGCUGUGGAUAUAUGC 0.2%
6156 104 UgAUGAAACGgAAACGGGA 0.2% 6205 109 gCAAGCUGUGGAUAUAUGC 1.7%
6157 104 UAAUGAAACGAAAAaGGGA 0.1% 6206 109 ACAAGCaGUGGAUAUAUGC 0.1%
6158 104 UAAUGAAACGAAAACGaGA 0.3% 6207 109 ACAAGCcGUGGAUAUAUGC 0.3%
6159 104 UAAUGAAACGAAAACGGaA 0.4% 6208 109 ACAAGCUGUaGAUAUAUGC 0.3%
6160 104 UAAUGAAACGgAAACGaGA 0.1% 6209 109 ACAAGCUGUGGAcAUAUGC 2.6%
6161 104 UAAUGAAACGgAAACGGaA 0.1% 6210 109 ACAAGCcGUGGAUAUAUGu 0.1%
6162 104 UgAUGAAACGAAAACGGaA 0.1% 6211 109 gCAAGCcGUGGAUAUAUGC 0.2%
105 105 AAUGAAACGAAAACGGGGAC 92.6% 6212 109 gCAAGCUGUaGAUAUAUGC 2.5%
6163 105 AAUGAAACGgAAACGGGAC 2.7% 6213 109 gCAAGCUGUGaAUAUAUGC 0.1%
6164 105 gAUGAAACGAAAACGGGAC 3.3% 6214 109 gCAAGCUGUGGAaAUAUGC 0.2%
6165 105 gAUGAAACGgAAACGGGAC 0.2% 6215 109 gCAAGCcGUGGgUAUAUGC 0.1%
6166 105 AAUGAAACGAAAAaGGGAC 0.1% 6216 109 ACAAGCaGUaGAUAUAUGC 0.2%
6167 105 AAUGAAACGAAAACGaGAC 0.3% 6217 109 gCAAGCcGUGGAUAUuUGC 0.1%
6168 105 AAUGAAACGAAAACGGaAC 0.4% 110 110 UGUACACUCCAGGUGGAGA 90.0%
6169 105 AAUGAAACGgAAACGaGAC 0.1% 6218 110 UGUACACUCCAGGUGGgGA 4.4%
6170 105 AAUGAAACGgAAACGGaAC 0.1% 6219 110 UGUACACaCCAGGUGGAGA 0.1%
6171 105 gAUGAAACGAAAACGGaAC 0.1% 6220 110 UGUACACcCCAGGUGGAGA 0.9%
106 106 GAUGAAAUGGAUGAUGGCA 92.3% 6221 110 UGUACACgCCAGGUGGAGA 0.1%
6172 106 GAUGAAAgGGAUGAUGGCg 1.7% 6222 110 UGUACACUCCAGGcGGAGA 1.3%
6173 106 GAUGAAgUGGAUGAUGGCA 0.1% 6223 110 UGUACACUCCAGGUGGcGA 0.2%
6224 110 UGUACACUCCcGGUGGAGA 0.1% 6233 111 AUGUACACgCCAGGUGGAG 0.1%
6225 110 aGUACACUCCAGGUGGgGA 0.1% 6234 111 AUGUACACUCCAGGcGGAG 1.3%
6226 110 UGUACACUCCAGGaGGgGA 0.2% 6235 111 AUGUACACUCCAGGUGGcG 0.2%
6227 110 UGUACACUCCAGGcGGgGA 0.1% 6236 111 AUGUACACUCCcGGUGGAG 0.1%
6228 110 gGUAuACUCCAGGaGGgGA 0.2% 6237 111 AaGUACACUCCAGGUGGgG 0.1%
6229 110 UGUACACaCCAGGaGGgGA 2.2% 6238 111 AUGUACACUCCAGGaGGgG 0.2%
111 111 AUGUACACUCCAGGUGGAG 90.0% 6239 111 AUGUACACUCCAGGcGGgG 0.1%
6230 111 AUGUACACUCCAGGUGGgG 4.4% 6240 111 AUGUAuACUCCAGGaGGgG 0.2%6231 111 AUGUACACaCCAGGUGGAG 0.1% 6241 111 AUGUACACaCCAGGaGGgG 2.2%
6232 111 AUGUACACcCCAGGUGGAG 0.9% 6242 111 AUGUACACgCCAGGaGGgG 0.1%
表20-2.从表1-2所列甲型流感片段2(PB1)序列得到的保守和小变体19-mer序列。保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化。
Seq Ref
匹配序列 %总数 1188 1188 GAAGUCUGUUCCACCAUU 90.8%
ID ID
6273 1188 GAAGAUCUGUUuCACCAUU 0.7%
1183 1183 AUGAUGAUGGGCAUGUUCA 96.7% 6274 1188 GAgGAUCUGUUCCACCAUU 0.2%
6243 1183 AUGAUGAUGGGCAUGUUuA 2.7% 6275 1188 GAAaAUCUGUUCCACCAUU 0.1%
6244 1183 AUGAUGAUGGGuAUGUUCA 0.4% 6276 1188 GAAGAcCUGUUCCACCAUU 6.8%
6245 1183 AUGAUGAUGGGuAUGUUuA 0.1% 6277 1188 GAAGAUCUGcUCCACCAUU 0.2%
6246 1183 AUGAUGAUGGGaAUGUUCA 0.1% 6278 1188 GAAGAUCUGUUaCAGCAUU 0.1%
1184 1184 UGAUGAUGGGCAUGUUCAA 96.7% 6279 1188 GAAGAcCUGUUCuACCAUU 0.1%
6247 1184 UGAUGAUGGGCAUGUUuAA 2.7% 6280 1188 aAAGAcCUGUUCCACCAUU 0.1%
6248 1184 UGAUGAUGGGuAUGUUCAA 0.4% 6281 1188 GAAGAcCUGcUCCACCAUU 0.2%
6249 1184 UGAUGAUGGGuAUGUUuAA 0.1% 1189 1189 AAGAUCUGUUCCACCAUUG 90.7%
6250 1184 UGAUGAUGGGaAUGUUCAA 0.1% 6282 1189 AAGAUCUGUUuCACCAUUG 0.7%
1185 1185 AUCUGUUCCACCAUUGAAG 91.1% 6283 1189 AgGAUCUGUUCCACCAUUG 0.2%
6251 1185 AUCUGUUuCACCAUUGAAG 0.7% 6284 1189 AAaAUCUGUUCCACCAUUG 0.1%
6252 1185 AcCUGUUCCACCAUUGAAG 6.9% 6285 1189 AAGAcCUGUUCCACCAUUG 6.9%
6253 1185 AUCUGcUCCACCAUUGAAG 0.2% 6286 1189 AAGAUCUGcUCCACCAUUG 0.2%
6254 1185 AUCUGUUaCACCAUUGAAG 0.1% 6287 1189 AAGAUCUGUUaCACCAUUG 0.1%
6255 1185 AUCUGUUCCACCAUUaAAG 0.1% 6288 1189 AAGAUCUGUUCCACCAUUa 0.1%
6256 1185 AcCUGUUCuACCAUUGAAG 0.1% 6289 1189 AAGAcCUGUUCuACCAUUG 0.1%
6257 1185 AcCUGcUCCACCAUUGAAG 0.3% 6290 1189 AAGAcCUGcUCCACCAUUG 0.3%
1186 1186 UCUGUUCCACCAUUGAAGA 91.1% 1190 1190 UGAAGAUCUGUUCCACCAU 90.7%
6258 1186 UCUGUUuCACCAUUGAAGA 0.7% 6291 1190 UGAAGAUCUGUUuCACCAU 0.7%
6259 1186 cCUGUUCCACCAUUGAAGA 6.9% 6292 1190 UGAgGAUCUGUUCCACCAU 0.2%
6260 1186 UCUGcUCCACCAUUGAAGA 0.2% 6293 1190 cGAAGAUCUGUUCCACCAU 0.1%
6261 1186 UCUGUUaCACCAUUGAAGA 0.1% 6294 1190 UGAAaAUCUGUUCCACCAU 0.1%
6262 1186 UCUGUUCCACCAUUaAAGA 0.1% 6295 1190 UGAAGAcCUGUUCCACCAU 6.8%
6263 1186 cCUGUUCuACCAUUGAAGA 0.1% 6296 1190 UGAAGAUCUGcUCCACCAU 0.2%
6264 1186 cCUGcUCCACCAUUGAAGA 0.3% 6297 1190 UGAAGAUCUGUUaCACCAU 0.1%
1187 1187 GAUCUGUUCCACCAUUGAA 90.9% 6298 1190 UGAAGAcCUGUUCuACCAU 0.1%
6265 1187 GAUGUGUUuCACCAUUGAA 0.7% 6299 1190 UaAAGAcCUGUUCCACCAU 0.1%
6266 1187 aAUCUGUUCCACCAUUGAA 0.1% 6300 1190 UGAAGAcCUGcUCCACCAU 0.2%
6267 1187 GAcCUGUUCCACCAUUGAA 6.9% 1191 1191 AGAUCUGUUCCACCAUUGA 90.7%
6268 1187 GAUCUGcUCCACCAUUGAA 0.2% 6301 1191 AGAUCUGUUuCACCAUUGA 0.7%
6269 1187 GAUCUGUUaCACCAUUGAA 0.1% 6302 1191 gGAUCUGUUCCACCAUUGA 0.2%
6270 1187 GAUCUGUUCCACCAUUaAA 0.1% 6303 1191 AaAUCUGUUCCACCAUUGA 0.1%
6271 1187 GAcCUGUUCuACCAUUGAA 0.1% 6304 1191 AGAcCUGUUCCACCAUUGA 6.9%
6272 1187 GAcCUGcUCCACCAUUGAA 0.3% 6305 1191 AGAUCUGcUCCACCAUUGA 0.2%
6306 1191 AGAUCUGUUaCACCAUUGA 0.1% 6354 1197 AGGCCAUGGUGUCUcGGGC 0.4%
6307 1191 AGAUCUGUUCCACCAUUaA 0.1% 6355 1197 AGGCCAUGGUuUCUAGGGC 0.2%
6308 1191 AGAcCUGUUCuACCAUUGA 0.1% 6356 1197 AGGCCAUGGUaUCUAGGaC 0.1%
6309 1191 AGAcCUGcUCCACCAUGA 0.3% 6357 1197 AGGCCAUGGUuUCcAGGGC 0.1%
1192 1192 UGAUAAACAAUGACCUUGG 90.5% 1198 1198 GGAGGCCAUGGUGUCUAGG 89.0%
6310 1192 UGAUAAACAAUGAuCUUGG 3.4% 6358 1198 GGAGGCCAUGGUGUCUgGG 0.1%
6311 1192 UGAUAAAuAAUGACCUUGG 0.6% 6359 1198 GGAGGCaAUGUGUCUAGG 0.1%
6312 1192 UGgUAAACAAUGACCUUGG 0.3% 6360 1198 GGAGGCCAUGaUGUCUAGG 0.2%
6313 1192 UGAUAAACAAcGACCUUGG 3.9% 6361 1198 GGAGGCCAUGGUaUCUAGG 0.6%
6314 1192 UGAUAAACAAUGACCUaGG 1.2% 6362 1198 GGAGGCCAUGGUGUCUAaG 0.1%
1193 1193 AUGAUAAACAAUGACCUUG 90.5% 6363 1198 GGAGGCCAUGGUGUCUAGa 0.2%
6315 1193 AUGAUAAACAAUGAuCUUG 3.4% 6364 1198 GGAGGCCAUGGUGUCUcGG 0.4%
6316 1193 AUGAUAAAuAAUGACCUUG 0.6% 6365 1198 GGAGGCCAUGGUuUCUAGG 0.2%
6317 1193 AUGgUAAACAAUGACCUUG 0.3% 6366 1198 uGAGGCCAUGGUGUCAGG 0.1%
6318 1193 AUGAUAAACAAcGACCUUG 3.9% 6367 1198 GGAGGCCAUGGUuUCcAGG 0.1%
6319 1193 AUGAUAACAAUGACCUaG 1.2% 6368 1198 uGAaGCCAUGGUGUCUAGG 0.3%
1194 1194 CCAUACAGCCAUGGAACAG 89.2% 1199 1199 UGGAGGCCAUGGUGUCUAG 88.9%
6320 1194 CCAUACAGCCAUGGAACgG 0.1% 6369 1199 UGGAGGCCAUGGUGUCUgG 0.1%
6321 1194 CCAUACAGCCAUGGgACAG 1.3% 6370 1199 gGGAGGCCAUGGUGUCUAG 0.3%
6322 1194 CCAUACAGuCAUGGAACAG 0.2% 6371 1199 UGGAGGCaAUGGUGUCUAG 0.1%
6323 1194 CCAUAuAGCCAUGGAACAG 0.6% 6372 1199 UGGAGGCCAUGaUGUCUAG 0.2%
6324 1194 CCuUACAGCCAUGGAACAG 0.2% 6373 1199 UGGAGGCCAUGGUaUCUAG 0.6%
6325 1194 CCcUACAGCCAUGGgACAG 0.1% 6374 1199 UGGAGGCCAUGGUGUCUAa 0.1%
6326 1194 CCuUACAGCCAUGGgACAG 8.1% 6375 1199 UGGAGGCCAUGGUGUCUcG 0.4%
6327 1194 CCuUACAGuCAUGGAACAG 0.1% 6376 1199 UGGAGGCCAUGGUuUCUAG 0.2%
1195 1195 CAUACAGCCAUGGAACAGG 89.2% 6377 1199 UuGAGGCCAUGGUGUCUAG 0.1%
6328 1195 CAUACAGCCAUGGAACgGG 0.1% 6378 1199 UGGAGGCCAUGGUuUCcAG 0.1%
6329 1195 CAUACAGCCAUGGgACAGG 1.3% 6379 1199 UuGAaGCCAUGGUGUCUAG 0.3%
6330 1195 CAUACAGuCAUGGAACAGG 0.2% 6380 1199 UGGAGGCuAUGGUaUCaAG 0.1%
6331 1195 CAUAuAGCCAUGGAACAGG 0.6% 6381 1199 UGGAGGCuAUGGUuUCaAG 0.1%
6332 1195 CuUACAGCCAUGGAACAGG 0.2% 6382 1199 UGGAGGCuAUGGUuUCcAG 0.7%
6333 1195 CcUACAGCCAUGGgACAGG 0.1% 1200 1200 GAGAUCAUGAAGAUCUGUU 88.8%
6334 1195 CuUACAGCCAUGGgACAGG 8.1% 6383 1200 GAGAUCAUGAgGAUCUGUU 0.2%
6335 1195 CuUACAGuCAUGGAACAGG 0.1% 6384 1200 GAaAUCAUGAAGAUCUGUU 0.5%
1196 1196 GAGGCCAUGGUGUCUAGGG 89.1% 6385 1200 GAGAcCAUGAAGAUCUGUU 0.1%
6336 1196 GAGGCCAUGGUGUCUgGGG 0.1% 6386 1200 GAGAUCAcGAAGAUCUGUU 0.1%
6337 1196 GAaGCCAUGGUGUCUAGGG 0.3% 6387 1200 GAGAUCAUGAAaAUCUGUU 0.1%
6338 1196 GAGGCaAUGGUGCUAGGG 0.1% 6388 1200 GAGAUCAUGAAGAcCUGUU 6.9%
6339 1196 GAGGCCAUGaUGUCUAGGG 0.2% 6389 1200 GAGAUCAUGAAGAUCUGcU 0.2%
6340 1196 GAGGCCAUGGUaUCUAGGG 0.5% 6390 1200 GAGAUCcUGAAGAUCUGUU 0.1%
6341 1196 GAGGCCAUGGUGUCUAaGG 0.1% 6391 1200 GAGAUCuUGAAGAUCUGUU 2.0%
6342 1196 GAGGCCAUGGUGUCUAGaG 0.2% 6392 1200 GAGAUCAUaAAGAcCUGUU 0.1%
6343 1196 GAGGCCAUGGUGUCUcGGG 0.4% 6393 1200 GAGAUCAUGAAGAcCUGcU 0.2%
6344 1196 GAGGCCAUGGUuUCUAGGG 0.2% 1201 1201 ACCAAGAAAAUGGUCACAC 88.7%
6345 1196 GAGGCCAUGGUaUCUAGGa 0.1% 6394 1201 ACCAAGAAAAUGGUCACgC 0.3%
6346 1196 GAGGCCAUGGUuUCcAGGG 0.1% 6395 1201 ACCAAGAAAAUGGUuACAC 0.1%
1197 1197 AGGCCAUGGUGUCUAGGGC 89.1% 6396 1201 ACCAAGAAgAUGGUCACAC 0.3%
6347 1197 AGGCCAUGGUGUCUgGGGC 0.1% 6397 1201 ACCAAGAgAAUGGUCACAC 0.4%
6348 1197 AaGCCAUGGUGUCUAGGGC 0.3% 6398 1201 ACCAAaAAAAUGGUCACAC 0.7%
6349 1197 AGGCaAUGGUGUCUAGGGC 0.1% 6399 1201 ACCAAGAAAAUGaUCACAC 0.1%
6350 1197 AGGCCAUGaUGUCUAGGGC 0.2% 6400 1201 ACCAAGAAAAUGGUCACcC 0.1%
6351 1197 AGGCCAUGGUaUCUAGGGC 0.5% 6401 1202 ACCAAGAAuAUGGUCACAC 0.1%
6352 1197 AGGCCAUGGUGUCUAaGGC 0.1% 6402 1201 ACCcAGAAAAUGGUCACAC 0.1%
6353 1197 AGGCCAUGGUGUCUAGaGC 0.2% 6403 1201 ACCAAaAAgAUGGUCACAC 0.2%
6404 1201 ACCAAGAgAAUGGUCACuC 0.1% 1205 1205 CAUGAAGAUCUGUUCCACC 88.6%
6405 1201 ACuAAGAAAAUGGUgACAC 1.1% 6455 1205 CAUGAAGAUCUGUUuCACC 0.7%
6406 1201 ACuAAGAAAAUGGUgACgC 0.1% 6456 1205 CAUGAgGAUCUGUUCCACC 0.2%
6407 1201 ACCAAaAAAAUGGUaACAC 0.1% 6457 1205 CAcGAAGAUCUGUUCCACC 0.1%
6408 1201 ACCAAaAAAAUGGUgACAC 0.1% 6458 1205 CAUGAAaAUCUGUUCCACC 0.1%
6409 1201 ACuAAaAAAAUGGUgACAC 0.5% 6459 1205 CAUGAAGAcCUGUUCCACC 6.8%
6410 1201 ACuAAGAAAAUGaUaACAC 0.2% 6460 1205 CAUGAAGAUCUGcUCCACC 0.2%
1202 1202 CCAAGAAAAUGGUCACACA 88.7% 6461 1205 CAUGAAGAUCUGUUaCACC 0.1%
6411 1202 CCAAGAAAAUGGUCACgCA 0.3% 6462 1205 CcUGAAGAUCUGUUCCACC 0.1%
6412 1202 CCAAGAAAAUGGUuACACA 0.1% 6463 1205 CUUGAAGAUCUGUUCCACC 2.0%
6413 1202 CCAAGAAgAUGGUCACACA 0.3% 6464 1205 CAUGAAGAcCUGUUCuACC 0.1%
6414 1202 CCAAGAgAAUGGUCACACA 0.4% 6465 1205 CAUaAAGAcCUGUUCCACC 0.1%
6415 1202 CCAAaAAAAUGGUCACACA 0.7% 6466 1205 CAUCAAGAcCUGcUCCACC 0.2%
6416 1202 CCAAGAAAAUGaUCACACA 0.1% 1206 1206 AUGAAGAUCUGUUCCACCA 88.6%
6417 1202 CCAAGAAAAUGGUCACcCA 0.1% 6467 1206 AUGAAGAUCUGUUuCACCA 0.7%
6418 1202 CCAAGAAuAUGGUCACACA 0.1% 6468 1206 AUGAgGAUCUGUUCCACCA 0.2%
6419 1202 CCcAGAAAAUGGUCACACA 0.1% 6469 1206 AcGAAGAUCUGUUCCACCA 0.1%
6420 1202 CCAAaAAgAUGGUCACACA 0.2% 6470 1206 AUGAAaAUCUGUUCCACCA 0.1%
6421 1202 CCAAGAgAAUGGUCACuCA 0.1% 6471 1206 AUGAAGAcCUGUUCCACCA 6.8%
6422 1202 CuAAGAAAAUGGUgACACA 1.1% 6472 1206 AUGAAGAUCUGcUCCACCA 0.2%
6423 1202 CuAAGAAAAUGGUgACgCA 0.1% 6473 1206 AUGAAGAUCUGUUaCACCA 0.1%
6424 1202 CCAAaAAAAUGGUaACACA 0.1% 6474 1206 cUGAAGAUCUGUUCCACCA 0.1%
6425 1202 CCAAaAAAAUGGUgACACA 0.1% 6475 1206 uUGAAGAUCUGUUCCACCA 2.0%
6426 1202 CuAAaAAAAUGGUgACACA 0.5% 6476 1206 AUGAAGAcCUGUUCuACCA 0.1%
6427 1202 CuAAGAAAAUGaUaACACA 0.2% 6477 1206 AUaAAGAcCUGUUCCACCA 0.1%
1203 1203 UGACCAAGAAAAUGGUCAC 88.7% 6478 1206 AUGAAGAcCUGcUCCACCA 0.2%
6428 1203 UGACCAAGAAAAUGGUuAC 0.1% 1207 1207 CAAGAAAAUGGUCACACAA 88.6%
6429 1203 UGACCAAGAAgAUGGUCAC 0.3% 6479 1207 CAAGAAAAUGGUCACACAg 0.1%
6430 1203 UGACCAAGAgAAUGGUCAC 0.5% 6480 1207 CAAGAAAAUGGUCACgCAA 0.3%
6431 1203 UaACCAAGAAAAUGGUCAC 0.3% 6481 1207 CAAGAAAAUGGUuACACAA 0.1%
6432 1203 UGACCAAaAAAAUGGUCAC 0.7% 6482 1207 CAAGAAgAUGGUCACACAA 0.3%
6433 1203 UGACCAAGAAAAUGaUCAC 0.1% 6483 1207 CAAGAgAAUGGUCACACAA 0.4%
6434 1203 UGACCAAGAAuAUGGUCAC 0.1% 6484 1207 CAAaAAAAUGGUCACACAA 0.7%
6435 1203 UGACCcAGAAAAUGGUCAC 0.1% 6485 1207 CAAGAAAAUGaUCACACAA 0.1%
6436 1203 UuACCAAGAAAAUGGUCAC 0.1% 6486 1207 CAAGAAAAUGGUCACcCAA 0.1%
6437 1203 UGACCAAaAAgAUGGUCAC 0.2% 6487 1207 CAAGAAuAUGGUCACACAA 0.1%
6438 1203 UGACuAAGAAAAUGGUgAC 1.2% 6488 1207 CcAGAAAAUGGUCACACAA 0.1%
6439 1203 UGACCAAaAAAAUGGUaAC 0.1% 6489 1207 CAAaAAgAUGGUCACACAA 0.2%
6440 1203 UGACuAAGAAAAUGaUAAC 0.2% 6490 1207 CAAGAgAAUGGUCACuCAA 0.1%
1204 1204 AUGACCAAGAAAAUGGUCA 88.7% 6491 1207 uAAGAAAAUGGUgACACAA 0.5%
6441 1204 AUGACCAAGAAAAUGGUuA 0.1% 6492 1207 uAAGAAAAUGGUgACACAg 0.5%
6442 1204 AUGACCAAGAAgAUGGUCA 0.3% 6493 1207 uAAGAAAAUGGUgACgCAA 0.1%
6443 1204 AUGACCAAGAgAAUGGUCA 0.5% 6494 1207 CAAaAAAAUGGUgACCACAA 0.1%
6444 1204 AUaACCAAGAAAAUGGUCA 0.3% 6495 1207 CAAaAAAAUGGUaACACAg 0.1%
6445 1204 AUGACCAAaAAAAUGGUCA 0.7% 6496 1207 uAAaAAAAUGGUgACACAA 0.5%
6446 1204 AUGACCAAGAAAAUGaUCA 0.1% 1208 1208 UCAUGAAGAUCUGUUCCAC 88.5%
6447 1204 AUGACCAAGAAuAUGGUCA 0.1% 6497 1208 UCAUGAAGAUCUGUUuCAC 0.7%
644g 1204 AUGACCcAGAAAAUGGUCA 0.1% 6498 1208 UCAUGAgGAUCUGUUCCAC 0.2%
6449 1204 AUuACCAAGAAAAUGGUCA 0.1% 6499 1208 cCAUGAAGAUCUGUUCCAC 0.1%
6450 1204 AUGACCAAaAAgAUGGUCA 0.2% 6500 1208 UCAcGAAGAUCUGUUCCAC 0.1%
6451 1204 AUGACuAAGAAAAUGGUgA 0.3% 6501 1208 UCAUGAAaAUCUGUUCCAC 0.1%
6452 1204 gUGACuAAGAAAAUGGUgA 0.9% 6502 1208 UCAUGAAGAcCUCUUCCAC 6.8%
6453 1204 AUGACCAAaAAAAUGGUaA 0.1% 6503 1208 UCAUGAAGAUCUGcUCCAC 0.2%
6454 1204 AUGACuAAGAAAAUGaUaA 0.2% 6504 1208 UCAUGAAGAUCUGUUaCAC 0.1%
6505 1208 UCcUGAAGAUCUGUUCCAC 0.1% 6554 1213 ACAUGACCAAGAAuAUGGU 0.1%
6506 1208 UCuUGAAGAUCUGUUCCAC 2.0% 6555 1213 ACAUGACCcAGAAAAUGGU 0.1%
6507 1208 UCAUGAAGAcCUGUUCuAC 0.1% 6556 1213 ACAUuACCAAGAAAAUGGU 0.1%
6508 1208 UCAUaAAGAcCUGUUCCAC 0.1% 6557 1213 ACAUGACCAAaAAgAUGGU 0.2%
6509 1208 UCAUGAAGAcCUGcUCCAC 0.2% 6558 1213 AuAUGACCAAaAAAAUGGU 0.1%
1209 1209 AUCAUGAAGAUCUGUUCCA 88.5% 6559 1213 AuAUGACuAAGAAAAUGaU 0.2%
6510 1209 AUCAUGAAGAUCUGUUuCA 0.7% 1214 1214 CAUGAGGGAAUACAAGCAG 88.4%
6511 1209 AUCAUGAgGAUCUGUUCCA 0.2% 6560 1214 CAUGAGGGgAUACAAGCAG 1.5%
6512 1209 AcCAUGAAGAUCUGUUCCA 0.1% 6561 1214 CAcGAGGGAAUACAAGCAG 0.2%
6513 1209 AUCAcGAAGAUCUGUUCCA 0.1% 6562 1214 CAUaAGGGAAUACAAGCAG 0.1%
6514 1209 AUCAUGAAaAUCUGUUCCA 0.1% 6563 1214 CAUGAaGGAAUACAAGCAG 0.3%
6515 1209 AUCAUGAAGAcCUGUUCCA 6.8% 6564 1214 CAUGAGGGAAUACAAuCAG 0.2%
6516 1209 AUCAUGAAGAUCUGcUCCA 0.2% 6565 1214 CAUGAuGGAAUACAAGCAG 0.1%
6517 1209 AUCAUGAAGAUCUGUUaCA 0.1% 6566 1214 CAUGAGGGAAUuCAAGCcG 0.1%
6518 1209 AUCcUGAAGAUCUGUUCCA 0.1% 6567 1214 CAUGAaGGgAUuCAAGCAG 0.2%
6519 1209 AUCuUGAAGAUCUGUUCCA 2.0% 1215 1215 GAUGAUGGGCAUGUUCAAC 88.4%
6520 1209 AUCAUGAAGAcCUGUUCuA 0.1% 6568 1215 GAUGAUGGGCAUGUUCAAu 8.3%
6521 1209 AUCAUaAAGAcCUGUUCCA 0.1% 6569 1215 GAUGAUGGGCAUGUUuAAC 0.7%
6522 1209 AUCAUGAAGAcCUGcUCCA 0.2% 6570 1215 GAUGAUGGGuAUGUUCAAC 0.3%
1210 1210 GAUGGGCAUGUUCAACAUG 88.4% 6571 1215 GAUGAUGGGCAUGUUuAAu 1.9%
6523 1210 GAUGGGCAUGUUCAAuAUG 8.3% 6572 1215 GAUGAUGGGuAUGUUCAAu 0.1%
6524 1210 GAUGGGCAUGUUuAACAUG 0.7% 6573 1215 GAUGAUGGGuAUGUUuAAu 0.1%
6525 1210 GAUGGGuAUGUUCAACAUG 0.3% 6574 1215 GAUGAUGGGaAUGUUCAAC 0.1%
6526 1210 GAUGGGCAUGUUuAAuAUG 1.9% 1216 1216 AACAUGACCAAGAAAAUGG 88.4%
6527 1210 GAUGGGuAUGUUCAAuAUG 0.1% 6575 1216 AACAUGACCAAGAAgAUGG 0.3%
6528 1210 GAUGGGuAUGUUuAAuAUG 0.1% 6576 1216 AACAUGACCAAGAgAAUGG 0.5%
6529 1210 GAUGGGaAUGUUCAACAUG 0.1% 6577 1216 AACAUGACuAAGAAAAUGG 0.1%
1211 1211 UGAUGGGCAUGUUCAACAU 88.4% 6578 1216 AAuAUGACCAAGAAAAUGG 0.4%
6530 1211 UGAUGGGCAUGUUCAAuAU 8.3% 6579 1216 AAuAUGACuAAGAAAAUGG 0.2%
6531 1211 UGAUGGGCAUGUUuAACAU 0.7% 6580 1216 AAugUGACuAAGAAAAUGG 0.9%
6532 1211 UGAUGGGuAUGUUCAACAU 0.3% 6581 1216 AACAUaACCAAGAAAAUGG 0.3%
6533 1211 UGAUGGGCaUGUUuAAuAU 1.9% 6582 1216 AACAUGACCAAaAAAUGG 0.7%
6534 1211 UGAUGGGuAUGUUCAAuAU 0.1% 6583 1216 AACAUGACCAAGAAAAUGa 0.1%
6535 1211 UGAUGGGuAUGUUuAAuAU 0.1% 6584 1216 AACAUGACCAAGAuAUGG 0.1%
6536 1211 UGAUGGGaAUGUUCAACAU 0.1% 6585 1216 AACAUGACCcAGAAAAUGG 0.1%
1212 1212 AUGAGGGAAUACAAGCAGG 88.4% 6586 1216 AACAUuACCAAGAAAAAUGG 0.1%
6537 1212 AUGAGGGgAUACAAGCAGG 1.5% 6587 1216 AACAUGACCAAaAAgAUGG 0.2%
6538 1212 AcGAGGGAAUACAAGCAGG 0.2% 6588 1216 AAuAUGACCAAaAAAAUGG 0.1%
6539 1212 AUaAGGGAAUACAAGCAGG 0.1% 6589 1216 AAuAUGACuAAGAAAAUGa 0.2%
654U 1212 AUGAaGGAAUACAAGCAGG 0.3% 1217 1217 AUGAUGGGCAUGUUCAACA 88.4%
6541 1212 AUGAGGGAAUACAAuCAGG 0.2% 6590 1217 AUGAUGGGCAUGUUCAAuA 8.3%
6542 1212 AUGAuGGAAUACAAGCAGG 0.1% 6591 1217 AUGAUGGGCAUGUUuAACA 0.7%
6543 1212 AUGAGGGAAUuCAAGCcGG 0.1% 6592 1217 AUGAUGGGuAUGUUCAACA 0.3%
6544 1212 AUGAaGGgAUuCAAGCAGG 0.2% 6593 1217 AUGAUGGGCAUGUUuAAuA 1.9%
1213 1213 ACAUGACCAAGAAAAUGGU 88.4% 6594 1217 AUGAUGGGuAUGUUCAAuA 0.1%
6545 1213 ACAUGACCAAGAAgAUGGU 0.3% 6595 1217 AUGAUGGGuAUGUUuAAuA 0.1%
6546 1213 ACAUGACCAAGAgAAUGGU 0.5% 6596 1217 AUGAUGGGaAUGUUCAACA 0.1%
6547 1213 ACAUGACuAAGAAAAUGGU 0.1% 1218 1218 CAUGACCAAGAAAAUGGUC 88.3%
6548 1213 AuAUGACCAAGAAAAUGGU 0.44% 6597 1218 CAUGACCAAGGAAAAUGGUu 0.1%
6549 1213 AuAUGACuAAGAAAAUGGU 0.2% 6598 1218 CAUGACCAAGAAgAUGGUC 0.3%
6550 1213 AugUGACuAAGAAAAUGGU 0.9% 6599 1218 CAUGACCAAGAgAAUGGUC 0.5%
6551 1213 ACAUaACCAAGAAAAUGGU 0.3% 6600 1218 uAUGACCAAGAAAAUGGUC 0.4%
6552 1213 ACAUGACCAAaAAAAUGGU 0.7% 6601 1218 CAUaACCAAGAAAAUGGUC 0.3%
6553 1213 ACAUGACCAAGAAAAUGaU 0.1% 6602 1218 CAUGACCAaAAAAUGGUC 0.6%
6603 1218 CAUGACCAAGAAAAUGaUC 0.1% 6653 1222 AUGGGCAUGUUuAACAUGC 0.7%
6604 1218 CAUGACCAAGAAuAUGGUC 0.1% 6654 1222 AUGGGuAUGUUCAACAUGC 0.3%
6605 1218 CAUGACCcAGAAAAUGGUC 0.1% 6655 1222 AUGGGCAUGUUCAAuAUGu 8.3%
6606 1218 CAUuACCAAGAAAAUGGUC 0.1% 6656 1222 AUGGGCAUGUUuAAuAUGC 1.9%
6607 1218 CAUGACCAAaAAgAUGGUC 0.2% 6657 1222 AUGGGuAUGUUCAAuAUGu 0.1%
6608 1218 CAUGACuAAGAAAAUGGUg 0.1% 6658 1222 AUGGGaAUGUUCAACAUGC 0.1%
6609 1218 uAUGACCAAaAAAAUGGUC 0.1% 1223 1223 ACAACAUGACCAAGAAAAU 88.2%
6610 1218 uAUGACuAAGAAAAUGGUg 0.2% 6659 1223 ACAACAUGACCAAGAAgAU 0.3%
6611 1218 CAUGACCAAaAAAAUGGUa 0.1% 6660 1223 ACAACAUGACCAAGAgAAU 0.5%
1219 1219 CUCAUAGUGAAUGCACCAA 88.3% 6661 1223 ACAACAUGACuAAGAAAAU 0.1%
6612 1219 CUCAUAGUGAAUGCACCAg 0.2% 6662 1223 ACAAuAUGACCAAGAAAAU 0.4%
6613 1219 CUCAUAGUGAAUGCAuCAA 0.4% 6663 1223 AuAACAUGACCAAGAAAAU 0.3%
6614 1219 CUuAUAGUGAAUGCACCAA 0.1% 6664 1223 ACAAuAUGACuAAGAAAAU 0.4%
6615 1219 CUaAUAGUGAAUGCACCAA 0.2% 6665 1223 ACAAugUGACuAAGAAAAU 0.9%
6616 1219 CUCAUAaUGAAUGCACCAA 0.1% 6666 1223 ACAACAUaACCAAGAAAAU 0.3%
6617 1219 CUCAUAGUGAAUGCACaAA 0.1% 6667 1223 ACAACAUCACCAAaAAAAU 0.7%
6618 1219 CUCAUAGUGAAUGCACCuA 0.2% 6668 1223 ACCAACAUGACCAAGAAuAU 0.1%
6619 1219 CUCAUAGUuAAUGCACCAA 0.1% 6669 1223 ACAACAUCACCcAGAAAAU 0.1%
6620 1219 CUCAUuGUGAAUGCACCAA 0.1% 6670 1223 ACAACAUuACCAAGAAAAAU 0.1%
6621 1219 CUCAUcGUaAAUGCACCgA 1.3% 6671 1223 ACAACAUGACCAAaAAgAU 0.2%
6622 1219 CUgAUAGUGAAUGCgCCcA 0.1% 6672 1223 ACAAuAUGACCAAaAAAAU 0.1%
1220 1220 GACCAAGAAAAUGGUCACA 88.3% 1224 1224 AUAGUGAAUGCACCAAAUC 88.2%
6623 1220 GACCAAGAAAAUGGUCACg 0.3% 6673 1224 AUGGUGAAUGCACCAgAUC 0.2%
6624 1220 GACCAAGAAAAUGGUuACA 0.1% 6674 1224 AUAGUGAAUGCAuCAAAUC 0.4%
6625 1220 CACCAAGAAgAUGGUCACA 0.3% 6675 1224 AUAaUGAAUGCACCAAAUC 0.1%
6626 1220 GACCAAGAgAAUGGUCACA 0.4% 6676 1224 AUAGUGAAUGCACaAAAUC 0.1%
6627 1220 aACCAAGAAAAUGGUCACA 0.3% 6677 1224 AUAGUGAAUGCACCAAAcC 0.4%
6628 1220 GACCAAaAAAAUGGUCACA 0.7% 6678 1224 AUAGUGAAUGCACCUAAUC 0.1%
6629 1220 GACCAAGAAAAUGaUCACA 0.1% 6679 1224 AUAGUuAAUGCACCAAAUC 0.1%
6630 1220 GACCAAGAAAAUGGUCACc 0.1% 6680 1224 AUuGUGAAUGCACCAAAUC 0.1%
6631 1220 GACCAAGAAuAUGGUCACA 0.1% 6681 1224 AUAGUGAAUGCACCuAgUC 0.1%
6632 1220 GACCcAGAAAAUGGUCACA 0.1% 6682 1224 AUuGUGAAUGCACCcAAUC 1.1%
6633 1220 uACCAAGAAAAUGGUCACA 0.1% 6683 1224 AUcGUaAAUGCACCgAAUC 1.3%
6634 1220 GACCAAaAAgAUGGUCACA 0.2% 1225 1225 UAGUGAAUGCACCAAAUCA 88.2%
6635 1220 GACCAAGAgAAUGGUCACu 0.1% 6684 1225 UAGUGAAUGCACCAgAUCA 0.2%
6636 1220 GACuAAGAAAAUGGUgACA 1.1% 6685 1225 UAGUGAAUGCAuCAAAUCA 0.4%
6637 1220 GACuAAGAAAAUGGUgACg 0.1% 6686 1225 UAaUGAAUGCACCAAAUCA 0.1%
6638 1220 GACCAAaAAAAUGGUaACA 0.1% 6687 1225 UAGUGAAUGCACaAAAUCA 0.1%
663g 1220 GACuAAGAAAAUGaUaACA 0.2% 6688 1225 UAGUGAAUGCACCAAAcCA 0.4%
1221 1221 UCAUAGUGAAUGCACCAAA 88.3% 6689 1225 UAGUGAAUGCACCuAAUCA 0.1%
6640 1221 UCAUAGUGAAUGCACCAgA 0.2% 6690 1225 UAGUuAAUGCACCAAAUCA 0.1%
6641 1221 UCAUAGUGAAUGCAuCAAA 0.4% 6691 1225 UuGUGAAUGCACCAAAUCA 0.1%
6642 1221 UuAUAGUGAAUGCACCAAA 0.1% 6692 1225 UAGUGAAUGCACCuAgUCA 0.1%
6643 1221 UaAUAGUGAAUGCACCAAA 0.2% 6693 1225 UuGUGAAUGCACCcAAUCA 1.1%
6644 1221 UCAUAaUGAAUGCACCAAA 0.1% 6694 1225 UcGUaAAUGCACCgAAUCA 1.3%
6645 1221 UCAUAGUGAAUGCACaAAA 0.1% 1226 1226 GCCAUGGUGUCUAGGGCCC 88.2%
6646 1221 UCAUAGUGAAUGCACCuAA 0.1% 6695 1226 GCCAUGGUGUCUAGGGGCuC 1.3%
6647 1221 UCAUAGUuAAUGCACCAAA 0.1% 6696 1226 GCCAUGGUGUCUgGGGCCC 0.1%
6648 1221 UCAUuGUGAAUGCACCAAA 0.1% 6697 1226 GCaAUGGUGUCUAGGGCCC 0.1%
6649 1221 UCAUAGUGAAUGCACCuAg 0.1% 6698 1226 GCCAUGaUGUCUAGGGCCC 0.2%
6650 1221 UCAUcGUaAAUGCACCgAA 1.3% 6699 1226 GCCAUGGUaUCUAGGGCCC 0.4%
6651 1221 UgAUAGUGAAUGCgCCcAA 0.1% 6700 1226 GCCAUGGUGUCUAaGGCCC 0.1%
1222 1222 AUGGGCAUGUUCAACAUGC 88.2% 6701 1226 GCCAUGGUGUCUAGaGCCC 0.2%
6652 1222 AUGGGCAUGUUCAACAUGu 0.2% 6702 1226 GCCAUGGUGUCUcGGGcCCC 0.3%
6703 1226 GCCAUGGUuUCUAGGGCCC 0.02% 6753 1230 CAACAUuACCAAGAAAAUG 0.1%
6704 1226 GCCAIGGIGICIcGGGCuC 0.1% 6754 1230 CAACAUGACCAAaAAgAUG 0.2%
6705 1226 GCCAUGGUaUcUAGGaCCC 0.1% 6755 1230 CAAuAUGACCAAaAAAAUG 0.1%
6706 1226 GCCAUGGUaUCUAGGGCCa 0.1% 6756 1230 CAACAUGAgCAAGAAAAaG 0.1%
6707 1226 GCCAUGGUuUCcAGGGCCC 0.1% 1231 1231 UGAAUGCACCAAAUCAUGA 88.1%
1227 1227 GACAACAUGACCAAGAAAA 88.2% 6757 1231 UGAAUGCACCAgAUCAUGA 0.2%
6708 1227 GACAACAUGACCAAGAAgA 0.3% 6758 1231 UGAAUGCAuCAAAUCAUGA 0.4%
6709 1227 GACAACAUGACCAAGAgAA 0.5% 6759 1231 UGAAUGCACaAAAUCAUGA 0.1%
6710 1227 GACAACAUGACuAAGAAAA 0.1% 6760 1231 UGAAUGCACCAAAcCAUGA 0.4%
6711 1227 GACAAuAUGACCAAGAAAA 0.4% 6761 1231 UGAAUGCCCCAAAUCAcGA 0.2%
6712 1227 GAuAACAUGACCAAGAAAA 0.3% 6762 1231 UGAAUGCACCAAAUCAUaA 0.1%
6713 1227 GACAAuAUGACuAAGAAAA 0.4% 6763 1231 UGAAUGCACCcAAUGAUGA 0.5%
6714 1227 GACAAugUGGCuAAGAAAA 0.9% 6764 1231 UGAAUGCACCuAAUCAUGA 0.1%
6715 1227 GACAACAUaACCAAGAAAA 0.3% 6765 1231 UuAAUGCACCAAAUCAUGA 0.1%
6716 1227 GACAACAUGACCAAaAAAA 0.7% 6766 1231 UaAAUGCACCgAAUCAUGA 1.3%
6717 1227 GACAACAUGACCAAGAAuA 0.1% 6767 1231 UGAAUGCACCuAgUCAUGA 0.1%
6718 1227 GACAACAUGACCcAGAAAA 0.1% 6768 1231 UaAAUGCgCCgAAUCAUGA 0.1%
6719 1227 GACAACAUuACCAAGAAAA 0.1% 6769 1231 UaAAUGcACCcAAUCAUGA 0.1%
6720 1227 GACAACAUGACCAAaAAgA 0.2% 6770 1231 UGAAUGCACCcAAUCAUGc 0.5%
6721 1227 GACAAuAUGACCAAaAAAA 0.1% 6771 1231 UaAAcGCACCgAAUCAUGA 0.2%
1228 1228 UGGGCAUGUUCAACAUGGU 88.2% 1232 1232 GUGAAUGCACCAAAUCAUG 88.0%
6722 1228 UGGGCAUGUUCAACAUGuU 0.2% 6772 1232 GUGAAUGCACCAgAUCAUG 0.2%
6723 1228 UGGGCAUGUUuAACAUGCU 0.7% 6773 1232 GUGAAUGCAuCAAAUCAUG 0.4%
6724 1228 UGGGuAUGUUCAACAUGCU 0.3% 6774 1232 aUGAAUGCACCAAAUCAUG 0.1%
6725 1228 UGGGCAUGUUCAAuAUGuU 8.3% 6775 1232 GUGAAUGCACaAAAUCAUG 0.1%
6726 1228 UGGGCAUGUUUAAuAUGCU 1.9% 6776 1232 GUGAAUGCACCAAAcCAUG 0.4%
6727 1228 UGGGuAUGUUCAAuAUGuU 0.1% 6777 1232 GUGAAUGCACCAAAUCAcG 0.2%
6728 1228 UGGGaAUGUUCAACAUGCU 0.1% 6778 1232 GUGAAUGCACCAAAUCAUa 0.1%
1229 1229 CCAUGGUGUCUAGGGCCCG 88.2% 6779 1232 GUGAAUGCACCcAAUCAUG 1.1%
6729 1229 CCAUGGUGUCUAGGGCuCG 1.3% 6780 1232 GUGAAUGCACCuAAUCAUG 0.1%
6730 1229 CCAUGGUGUCUgGGGCCCG 0.1% 6781 1232 GUuAAUGCACCAAAUCAUG 0.1%
6731 1229 CaAUGGUGUCUAGGGCCCG 0.1% 6782 1232 GUaAAUGCACCgAAUCAUG 1.3%
6732 1229 CCAUGaUGUCUAGGGCCCG 0.2% 6783 1232 GUGAAUGCACCuAgUCAUG 0.1%
6733 1229 CCAUGGUaUCUAGGGCCCG 0.4% 6784 1232 GUaAAUGCgCCGAAUCAUG 0.1%
6734 1229 CCAUGGUGUCUAaGGCCCG 0.1% 6785 1232 GUaAAUGCACCcAAUCAUG 0.1%
6735 1229 CCAUGGUGUCUAGaGCCCG 0.2% 6786 1232 GUGAAUGCACCcAAcCAUG 0.5%
6736 1229 CCAUGGUGUCUcGGGCCCG 0.3% 6787 1232 GUaAAcGCACCgAAUCAUG 0.2%
6737 1229 CCAUGGUuUCUAGGGCCCG 0.2% 6788 1232 GUGAAUGCACCcAAcuAUG 6.2%
6738 1229 CCAUGGUGUCUcGGGCuCG 0.1% 1233 1233 AGAUCAUGAAGAUCUGUUC 88.0%
6739 1229 CCAUGGUaUCUAGGaCCCG 0.1% 6789 1233 AGAUCAUGAAGAUCUGUUu 0.7%
6740 1229 CCAUGGUaUCUAGGGCCaG 0.1% 6790 1233 AGAUCAUGAgGAUCUGUUC 0.2%
6741 1229 CCAUGGUuUCcAGGGCCCG 0.1% 6791 1233 AaAUCAUGAAGAUCUGUUC 0.5%
1230 1230 CAACAUGACCAAGAAAAUG 88.2% 6792 1233 AGAcCAUGAAGAUCUGUUC 0.1%
6742 1230 CAACAUGACCAAGAAgAUG 0.3% 6793 1233 AGAUCAcGAAGAUCUGUUC 0.1%
6743 1230 CAACAUGACCAAGAgAAUG 0.5% 6794 1233 AGAUCAUGAAaAUCUGUUC 0.1%
6744 1230 CAACAUGACuAAGAAAAUG 0.1% 6795 1233 AGAUCAUGAAGAcCUGUUc 6.9%
6745 1230 CAAuAUGACCAAGAAAAUG 0.4% 6796 1233 AGAUCAUGAAGAUCUGcUC 0.2%
6746 1230 uAACAUGACCAAGAAAAUG 0.3% 6797 1233 AGAUCAUGAAGAUCUGUUa 0.1%
6747 1230 CAAuAUGACuAAGAAAAUG 0.4% 6798 1233 AGAUCcUGAAGAUCUGUUC 0.1%
6748 1230 CAAugUGACuAAGAAAAUG 0.9% 6799 1233 AGAUCuUGAAGAUCUGUUC 2.0%
6749 1230 CAACAUaACCAAGAAAAUG 0.3% 6800 1233 AGAUCAUaAAGAcCUGUUC 0.1%
6750 1230 CAACAUGACCAAaAAAAUG 0.7% 6801 1233 AGAUCAUGAAGAcCUGcUC 0.2%
6751 1230 CAACAUGACCAAGAAuAUG 0.1% 1234 1234 UCAUGAGGGAAUACAAGCA 88.0%
6752 1230 CAACAUGACCcAGAAAAUG 0.1% 6802 1234 UCAUGAGGGgAUACAAGCA 1.5%
6803 1234 cCAUGAGGGAAUACAAGCA 0.4% 6840 1237 aAUCAUGAAGAUCUGUUCC 0.5%
6804 1234 UCAcGAGGGAAUACAAGCA 0.2% 6841 1237 GAcCAUGAAGAUCUGUUCC 0.1%
6805 1234 UCAUaAGGGAAUACAAGCA 0.1% 6842 1237 GAUCAcGAAGAUCUGUUCC 0.1%
6806 1234 UCAUGAaGGAAUACAAGCA 0.3% 6843 1237 GAUCAUGAAaAUCUGUUCC 0.1%
6807 1234 UCAUGAGGGAAUACAAuCA 0.2% 6844 1237 GAUCAUGAAGAcCUGUUCC 6.8%
6808 1234 UCAUGAuGGAAUACAAGCA 0.1% 6845 1237 GAUCAUGAAGAUCUGcUCC 0.2%
6809 1234 UCAUGAGGGAAUuCAAGCc 0.1% 6846 1237 GAUCAUGAAGAUCUGUUaC 0.1%
6810 1234 UCAUGAaGGgAUuCAAGcA 0.2% 6847 1237 GAUCcUGAAGAUCUGUUCC 0.1%
1235 1235 CAGCGCAAAAUGCCAUAAG 88.0% 6848 1237 GAUCuUGAAGAUCUGUUCC 2.0%
6811 1235 CAGCGCAAAAUGCuAUAAG 0.4% 6849 1237 GAUCAUGAAGAcCUGUUCu 0.1%
6812 1235 CAGCGCAgAAUGCCAUAAG 0.2% 6850 1237 GAUCAUaAAGAcCUGUUCC 0.1%
6813 1235 CAGuGCAAAAUGCCAUAAG 0.6% 6851 1237 GAUCAUGAAGAcCUGcUcc 0.2%
6814 1235 CgGCGCAAAAUGCCAUAAG 0.1% 1238 1238 AGUGAAUGCACCAAAUCAU 88.0%
6815 1235 CAGuGCAAAAUGCuAUAAG 1.6% 6852 1238 AGUGAAUGCACCAgAUCAU 0.2%
6816 1235 CAaCGCAAAAUGCCAUAAG 0.1% 6853 1238 AGUGAAUGCAuCAAAUCAU 0.4%
6817 1235 CAGCaCAAAAUGCcAUAAG 0.1% 6854 1238 AaUGAAUGCACCAAAUCAU 0.1%
6818 1235 CAGCGCAAAAUGCaAUAAG 0.2% 6855 1238 AGUGAAUGCACaAAAUCAU 0.1%
6819 1235 CAGCuCAAAAUGCCAUAAG 0.1% 6856 1238 AGUGAAUGCACCAAAcCAU 0.4%
6820 1235 CAuCGCAAAAUGCCAUAAG 0.1% 6857 1238 AGUGAAUGCACCAAAUCAc 0.22%
6821 1235 CAGCacAAAAUGCuAUAAG 8.1% 6858 1238 AGUGAAUGCACCuAAUCAU 0.1%
6822 1235 CAGCaCAAAAUGuuAUAAG 0.1% 6859 1238 AGUuAAUGCACCAAAUCAU 0.1%
6823 1235 CAGCaCAAAgUGCuAUAAG 0.1% 6860 1238 uGUGAAUGCACCAAAUCAU 0.1%
6824 1235 CAGCacAAAAUGCaAUAAG 0.1% 6861 1238 AGUGAAUGCACCuAgUCAU 0.1%
1236 1236 GAAUUCUUGAGGAUGAACA 88.0% 6862 1238 uGUGAAUGCACCcAAUCAU 1.1%
6825 1236 GAAUUCUUGAGGAUGAgCA 0.1% 6863 1238 cGUaAAUGCACCgAAUCAU 1.3%
6826 1236 GAAUUCUUGAGGAUGgACA 0.1% 1239 1239 GGAAUUCUUGAGGAUGAAC 88.0%
6827 1236 GAAUaCUUGAGGAUGAACA 0.2% 6864 1239 GGAAUUCUUGAGGAUGAgC 0.1%
6828 1236 GAAUcCUUGAGGAUGAACA 0.4% 6865 1239 GGAAUUUCUUGAGGAUgAC 0.1%
6829 1236 GAAUUaUUGAGGAUGAACA 0.1% 6866 1239 GGAAUaCUUGAGGAUGAAC 0.2%
6830 1236 GAAUUCUcGAGGAUGAACA 0.1% 6867 1239 GGAAUcCUUGAGGAUGAAC 0.4%
6831 1236 GAAUUCUUGAaGAUGAACA 2.1% 6868 1239 GGAAUUaUUGAGGAUGAAC 0.1%
6832 1236 GAAUUCUUGAGGAcGAACA 0.1% 6869 1239 GGAAUUCUcGAGGAUGAAC 0.1%
6833 1236 GAAUUCUUGAGGAUcAACA 0.3% 6870 1239 GGAAUUCUUGAaGAUGAAC 2.1%
6834 1236 GAAUaCUUGAGGAUGAgCA 0.5% 6871 1239 GGAAUUCUUGAGGAcGAAC 0.1%
6835 1236 GgAUaCUUGAGGAUGAgCA 4.3% 6872 1239 GGAAUUCUUGAGGAUcAAC 0.3%
6836 1236 GAAUaCUUGAaGAUGAACA 1.0% 6873 1239 GGAAUaCUUGAGGAUGAgC 0.5%
6837 1236 GAgUaCUUGAaGAUGAACA 0.2% 6874 1239 GGgAUaCUUGAGGAUGAgC 4.3%
1237 1237 GAUCAUGAAGAUCUGUUCC 88.00% 6875 1239 GGAAUaCUUGAaGAUGAAC 1.0%
6838 1237 GAUCAUGAAGAUCUGUUuC 0.7% 6876 1239 GGAgUACUUGAaGAUGAAC 0.2%
6839 1237 GAUCAUGAgGAUCUGUUCC 0.2%
表20-3.从表1-3所列甲型流感片段3(PA)序列得到的保守和小变体19-mer序列.保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化.
Seq Ref
ID ID 匹配序列 %总数 6881 2391 UUUAaAGCCUAUGUGGAUG 0.1%
2390 2390 UUAGAGCCUAUGUGGAUGG 98.9% 6882 2391 UUUAGAaCCUAUGUGGAUG 0.6%
6877 3390 UUAaAGCCUAUGUGGAUGG 0.1% 6883 2391 UUUAGAGCCUAUGUaGAUG 0 .2%
6878 2390 UUAGAaCCUAUGUGGAUGG 0.6% 6884 2391 UUUAGAGCCUAUGUGGAUa 0.1%
6879 2390 UUAGAGCCUAUGUaGAUGG 0.2% 2392 2392 AGCAAUUGAGGAGUGCCUG 98.7%
6880 2390 UUAGAGCCUAUGUGGAUaG 0.1% 6885 2392 AGcAgUUGAGGAGUGCCUG 0.1%
2391 2391 UUUAGAGCCUAUGUGGAUG 98.9% 6886 2392 AGCAAUUGAGGAaUGCCUG 1.0%
6887 2392 AGCAAUUGAGGAGUGCCUa 0.2%
2393 2393 UUGAGGAGUGCCUGAUUAA 98.7% 6931 2403 AUGAUCCCUGGGUUcUGCU 0.1%
6888 2393 UUGAGGAGUGCCUGgUUAA 0.1% 2404 2404 AAUGAUCCCUGGGUUUUGC 98.0%
6889 2393 UUGAGGAaUGCCUGAUUAA 1.0% 6932 2404 AAcGAUCCCUGGGUUUUGC 1.8%
6890 2393 UUGAGGAGUGCCUaAUUAA 0.2% 6933 2404 AAUGAUCCCUGGGcUUUGC 0.1%
2394 2394 GCAAUUGAGGAGUGCCUGA 98.6% 6934 2404 AAUGAUCCCUGGGUUcUGC 0.1%
6891 2394 GCAAUUGAgGAGUGCCUGg 0.1% 2405 2405 CCUGAUUAAUGAUCCCUGG 97.9%
6892 2394 GCAgUUGAGGAGUGCCUGA 0.1% 6935 2405 CCUGgUUAAUGAUCCCUGG 0.1%
6893 2394 GCAAUUGAGGAaUGCCUGA 1.0% 6936 2405 CCUaAUUAAUGAUCCCUGG 0.2%
6894 2394 GCAAUUGAGGAGUGCCUaA 0.2% 6937 2405 CCUGAUUAAcGAUCCCUGG 1.8%
2395 2395 AUUGAGGAGUGCCUGAUUA 98.6% 2406 2406 UGCCUGAUUAAUGAUCCCU 97.9%
6895 2395 AUUGAGGAGUGCCUGgUUA 0.1% 6938 2406 UGCCUGgUUAAUGAUCCCU 0.1%
6896 2395 gUUGAGGAGUGCCUGAUUA 0.1% 6939 2406 UGCCUaAUUAAUGAUGCCU 0.2%
6897 2395 AUUGAGGAaUGCCUGAUUA 1.0% 6940 2406 UGCCUGAUUAAcGAUCCCU 1.8%
6898 2395 AUUGAGGAGUGCCUaAUUA 0.2% 2407 2407 AUUAAUGAUCCCUGGGUUU 97.9%
2396 2396 CAAUUGAGGAGUGCCUGAU 98.66% 6941 2407 gUUAAUGAUCCCUGGGUUU 0.1%
6899 2396 CAAUUGAGGAGUGCCUGgU 0.1% 6942 2407 AUUAAcGAUCCCUGGGUUU 1.8%
6900 2396 CAgUUGAGGAGUGCCUGAU 0.1% 6943 2407 AUUAAUGAUCCCUGGGcUU 0.1%
6901 2396 CAAUUGAGGGAaUGCUGAU 1.0% 6944 2407 AUUAAUGAUCCCUGGGUUc 0.1%
6902 2396 CAAUUGAGGAGUGCCUaAU 0.2% 2408 2408 GCCUGAUUAAUGAUCCCUG 97.9%
2397 2397 AAUUGAGGAGUGCCUGAUU 98.6% 6945 2408 GCCUGgUUAAUGAUCCCUG 0.1%
6903 2397 AAUUGAGGAGUGCCUGgUU 0.1% 6946 2408 GCCUaAUUAAUGAUCCCUG 0.2%
6904 2397 AgUUGAGGAGUGCCUGAUU 0.1% 6947 2408 GCCUGAUUAAcGAUCCCUG 1.8%
6905 2397 AAUUGAGGAaUGCCUGAUU 1.0% 2409 2409 CUGAUUAAUGAUCCCUGGG 97.9%
6906 2397 AAUUGAGGAGUGCCUaAUU 0.2% 6948 2409 CUGgUUAAUGAUCCCUGGG 0.1%
2398 2398 UAGAGCCUAUGUGGAUGGA 98.3% 6949 2409 CUaAUUAAUGAUCCCUGGG 0.2%
6907 2398 UAGAGCCUAUGUGGAUGGg 0.6% 6950 2409 CUGAUUAAcGAUCCCUGGG 1.8%
6908 2398 UAaAGCCUAUGUGGAUGGA 0.1% 2410 2410 GAUUAAUGAUCCCUGGGUU 97.8%
6909 2398 UAGAaCCUAUGUGGAUGGA 0.6% 6951 2410 GgUUAAUGAUCCCUGGGUU 0.1%
6910 2398 UAGAGCCUAUGUaGAUGGA 0.2% 6952 2410 aAUUAAUGAUCCCUGGGUU 0.2%
6911 2398 UAGAGCCUAUGUGGAUaGA 0.1% 6953 2410 GAUUAAcGAUCCCUGGGUU 1.8%
2399 2399 AGAGCCUAUGUGGAUGGAU 98.3% 6954 2410 GAUUAAUGAUCCCUGGGcU 0.1%
6912 2399 AGAGCCUAUGUGGAUGGgU 0.6% 2411 2411 UGAUUAAUGAUCCCUGGGU 97.8%
6913 2399 AaAGCCUAUGUGGAUGGAU 0.1% 6955 2411 UGgUUAAUGAUCCCUGGGU 0.1%
6914 2399 AGAaCCUAUGUGGAUGGAU 0.6% 6956 2411 UaAUUAAUGAUCCCUGGGU 0.2%
6915 2399 AGAGCCUAUGUaGAUGGAU 0.2% 6957 2411 UGAUUAAcGAUCCCUGGGU 1.8%
6916 2399 AGAGCCUAUGUGGAUaGAU 0.1% 6958 2411 UGAUUAAUGAUCCCUGGGc 0.1%
2400 2400 GAGCCUAUGUGGAUGGAUU 98.2% 2412 2412 UAUAUGAAGCAAUUGAGGA 97.3%
6917 24O0 GAGCCUAUGUGGAUGGgUU 0.6% 6959 2412 UAUAUGAAGCAgUUGAGGA 0.1%
6918 2400 aAGCCUAUGUGGAUGGAUU 0.1% 6960 2412 UAUAUGgAGCAAUUGAGGA 2.6%
6919 2400 GAaCCUAUGUGGAUGGAUU 0.6% 2413 2413 CUAUAUGAAGCAAUUGAGG 97.2%
6920 2400 GAGCCUAUGUaGAUGGAUU 0.2% 6961 2413 CUAUAUGAAGCAgUUGAGG 0.1%
6921 2400 GAGCCUAUGUGGAUaGAUU 0.1% 6962 2413 CUAUAUGgAGCAAUUGAGG 2.6%
6932 2400 GAGCCUAUGUGGAUGGAUa 0.1% 6963 2413 uUAUAUGAAGCAAUUGAGG 0.1%
2401 2401 UAAUGAUCCCUGGGUUUG 98.0% 2414 2414 CUUGGUUCAACUCCUUCCU 97.1%
6923 24O1 UAAcGAUCCCUGGGUUUUG 1.8% 6964 2414 CUUGGUUCAACUCCUUCuU 0.1%
6924 2401 UAAUGAUCCCUGGGcUUUG 0.1% 6965 2414 CUUGGUUuAACUCCUUCCU 0.2%
6925 2401 UAAUGAUCCCUGGGUUcUG 0.1% 6966 2414 CaUGGUUCAACUCCUUCCU 0.1%
2402 2402 UUAAUGAUCCCUGGGUUUU 98.0% 6967 2414 CcUGGUUCAACUCCUUCCU 0.9%
6926 2402 URAAcGAUCCCUGGGUUUU 1.8% 6968 2G14 CgUGGUUCAACUCCUUCCU 1.6%
6927 2402 UUAAUGAUCCCUGGGcUUU 0.1% 2415 2415 UCUUGGUUCAACUCCUUCC 97.1%
6928 2402 UUAAUGAUCCCUGGGUUcU 0.1% 6969 2415 UCUUGGUUCAACUCCUUCu 0.1%
2403 2403 AUGAUCCCUGGGUUUUGCU 98.0% 6970 2415 UCUUGGUUuAACUCCUUCC 0.2%
6929 2403 AcGAUCCCUGGGUUUUGCU 1.8% 6971 2415 UCaUGGUUCAACUCCUUCC 0.1%
6930 2403 AUGAUCCCUGGGcUUUGCU 0.1% 6972 2415 UCcUGGUUCAACUCCUUCC 0.9%
6973 2415 UCgUGGUUCAACUCCUUCC 1.6% 7015 2427 gAGCAAUUGAGGAGUGCCU 2.6%
2416 2416 AGGAGUGCCUGAUUAAUGA 96.9% 7016 2427 AAGCAAUUGAGGAaUGCCU 1.0%
6974 2416 AGGAGUGCCUGgUUAAUGA 0.1% 2428 2428 GAAGCAAUUGAGGAGUGCC 96.4%
6g75 2416 AGGAaUGCCUGAUUAAUGA 1.0% 7O17 2428 GAAGCAgUUGAGGAGUGCC 0.1%
6976 2416 AGGAGUGCCUaAUUAAUGA 0.2% 7018 2428 GgAGCAAUUGAGGAGUGCC 2.6%
6977 2416 AGGAGUGCCUGAUUAAcGA 1.8% 7019 2428 GAAGCAAUUGACCAaUGCC 1.0%
2417 2417 GAGUGCCUGAUUAAUGAUC 96.9% 2429 2429 ACAAAUUUGCAGCAAUAUG 95.4%
6978 2417 GAGUGCCUGgUUAAUGAUC 0.1% 7020 2429 ACAAAUUUGCgGCAAUAUG 0.3%
6979 2417 GAaUGCCUGAUUAAUGAUC 1.0% 7021 2429 ACAAAUUcGCAGCAAUAUG 0.1%
6980 2417 GAGUGCCUaAUUAAUGAUC 0.2% 7022 2429 ACAAAUUUGCuGCAAUAUG 0.4%
6981 2A17 GAGUGCCUGAUUAAcGAUC 1.8% 7023 2429 ACAAgUUUGCuGCAAUAUG 1.5%
2418 2418 UGAGGAGUGCCUGAUUAAU 96.9% 7024 2429 ACAAgUUcGCuGCAAUAUG 1.8%
6982 2418 UGAGGAGUGCCUGgUUAAU 0.1% 2430 2430 AACAAAUUUGCAGCAAUAU 95.4%
6983 2418 UGAGGAaUGCCUGAUUAAU 1.0% 7025 2430 AACAAAUUUGCgGCAAUAU 0.3%
6984 2418 UGAGGAGUGCCUaAUUAAU 0.2% 7026 2430 AACAAAUUcGCAGCAAUAU 0.1%
6985 2418 UGAGGAGUGCCUGAUUAAc 1.8% 7027 2430 AACAAAUUUGCuGCAAUAU 0.4%
2419 2419 GUGCCUGAUUAAUGAUCCC 96.9% 7028 2430 AACAAgUUUGCuGCAAUAU 1.5%
6986 2419 GUGCCUGgUUAAUGAUCCC 0.1% 7029 2430 AACAAgUUcGCuGCAAUAU 1.8%
6987 2419 aUGCCUGAUUAAUGAUCCC 1.0% 2431 2431 GGGCUAUAUGAAGCAAUUG 95.3%
6988 2419 GUGCCUaAUUAAUGAUCCC 0.2% 7030 2431 GGGCUAUAUGAAGCAgUUG 0.1%
6989 2419 GUGCCUGAUUAAcGAUCCC 1.8% 7031 2431 GGGCUAUAUGgAGCAAUUG 2.6%
2420 2420 GGAGUGCCUGAUUAAUGAU 96.9% 7032 2431 GGGuUAUAUGAAGCAAUUG 0.1%
6990 2420 GGAGUGCCUGgUUAAUGAU 0.1% 7033 2431 GGaCUAUAUGAAGCAAUUG 1.9%
6991 2420 GGAaUGCCUGAUUAAUGAU 1.0% 2432 2432 GCUAUAUGAAGCAAUUGAG 95.3%
6992 2420 GGAGUGCCUaAUUAAUGAU 0.2% 7034 2432 GCUAUAUGAAGCAgUUGAG 0.1%
6993 2420 GGAGUGCCUGAUUAAcGAU 1.8% 7035 2432 GCUAUAUGgAGCAAUUGAG 2.6%
2421 2421 GAGGAGUGCCUGAUUAAUG 96.9% 7036 2432 GuUAUAUGAAGCAAUUGAG 0.1%
6994 2421 GAGGAGUGCCUGgUUAAUG 0.1% 7037 2432 aCUAUAUGAAGCAAUUGAG 1.9%
6995 2421 GAGGAaUGCCUGAUUAAUG 1.0% 2433 2433 UCAUGUAUUCAGAUUUUCA 95.3%
6996 2421 GAGGAGUGCCUaAUUAAUG 0.2% 7038 2433 UCAUGUAUUCgGAUUUUCA 1.9%
6997 2421 GAGGAGUGCCUGAUUAAcG 1.8% 7039 2433 UuAUGUAUUCAGAUUUUCA 0.1%
2422 2422 AGUGCCUGAUUAAUGAUCC 96.9% 7040 2433 UCAUGUAcUCAGAUUUUCA 0.1%
6998 2422 AGUGCCUGgUUAAUGAUCC 0.1% 7041 2433 UCAUGUAUUCAGAcUUUCA 0.1%
6999 2422 AaUGCCUGAUUAAUGAUCC 1.0% 7042 2433 UCAUGUAUUCAGAUUUcCA 0.1%
7000 2422 AGUGCCUaAUUAAUGAUCC 0.2% 7043 2433 UCAUGUAUUCgGAUUUcCA 0.1%
7001 2422 AGUGCCUGAUUAAcGAUCC 1.8% 7044 2433 UCAUGUAUUCAGAcUUcCA 2.2%
2423 2423 UAUGAAGCAAUUGAGGAGU 96.4% 2434 2434 GGCUAUAUGAAGCAAUUGA 95.3%
7002 2423 UAUGAAGCAgUUGAGGAGU 0.1% 7045 2434 GGCUAUAUGAAGCAgUUGA 0.1%
7003 2423 UAUGgAGCAAUUGAGGAGU 2.6% 7046 2434 GGCUAUAUGgAGCAAUUGA 2.6%
7004 2423 UAUGAAGCAAUUGAGGAaU 1.0% 7047 2434 GGuUAUAUGAAGCAAUUGA 0.1%
2424 2424 AUAUGAAGCAAUUGAGGAG 96.4% 7048 2434 GaCUAUAUGAAGCAAUUGA 1.9%
7005 2424 AUAUGAAGCAgUUGAGGAG 0.1% 2435 2435 CAAAUUUGCAGCAAUAUGC 95.2%
7006 2424 AUAUGgAGCAAUUGAGGAG 2.6% 7049 2435 CAAAUUUGCAGCAAUAUGu 0.2%
7007 2424 AUAUGAAGCAAUUGAGGAa 1.0% 7050 2435 CAAAUUUGCgGCAAUAUGC 0.3%
2425 2425 AUGAAGCAAUUGAGGAGUG 96.4% 7051 2435 CAAAUUcGCAGCAAUAUGC 0.1%
7008 2425 AUGAAGCAgUUGAGGAGUG 0.1% 7052 2435 CAAAUUUGCuGCAAUAUGC 0.3%
7009 2425 AUGgAGCAAUUGAGGAGUG 2.6% 7053 2435 CAAAUUUGCuGCAAUAUGu 0.1%
7010 2425 AUGAAGCAAUUGAGGAaUG 1.0% 7054 2435 CAAgUUUGGuGCAAUAUGC 1.5%
2426 2426 UGAAGCAAUUGAGGAGUGC 96.4% 7055 2435 CAAgUUcGCuGCAAUAUGC 1.8%
7011 2426 UGAAGCAgUUGAGGAGUGC 0.1% 2436 2436 AAAUUUGCAGCAAUAUGCA 95.2%
7013 2426 UGgAGCAAUUGAGGAGUGC 2.6% 7056 2436 AAAUUUGCAGCAAUAUGuA 0.2%
7013 2426 UGAAGCAAUUGAGGAaUGC 1.0% 7057 2436 AAAUUUGCgGCAAUAUGCA 0.3%
2437 2427 AAGCAAUUGAGGAGUGCCU 96.4% 7058 2436 AAAUUcGCAGCAAUAUGCA 0.1%
7014 2427 AAGCAgUUGAGGAGUGCCU 0.1% 7059 2436 AAAUUUGCuGCAAUAUGCA 0.3%
7060 2436 AAAUUUGCuGCAAUAUGuA 0.1% 7107 2443 AgUUUUAGAGCCUAUGUGG 0.1%
7061 2436 AAgUUUGCuGCAAUAUGCA 1.5% 7108 2443 AAcUUUACAGCCUAUGUGG 4.1%
7062 2436 AAgUUcGCuGCAAUAUGCA 2.1% 7109 2443 AAUUUUAaAGCCUAUGUGG 0.1%
2437 2437 UUCAUGUAUUCAGAUUUUC 95.2% 7110 2443 AAUUUUAGAGCCUAUGUaG 0.2%
7063 2437 UUCAUGUAUUCgGAUUUUC 1.9% 7111 2443 AuUUUUAGAGCCUAUGUGG 0.1%
7064 2437 UUuAUGUAUUCAGAUUUUC 0.1% 7112 2443 AAcUUUAGAaCCUAUGUGG 0.6%
7065 2437 cUCAUGUAUUCAGAUUUUC 0.1% 7113 2443 AccUUUAGAGCCUAUGUGG 0.1%
7066 2437 UUCAUGUAcUCAGAUUUUC 0.1% 2444 2444 AUUUUAGAGCCUAUGUGGA 94.7%
7067 2437 UUCAUGUAUUCAGAcUUUC 0.1% 7114 2444 gUUUUAGAGCCUAUGUGGA 0.1%
7068 2437 UUCAUGUAUUCAGAUUUcC 0.1% 7115 2444 AcUUUAGAGCCUAUGUGGA 4.1%
7069 2437 UUCAUGUAUUCgGAUUUcC 0.1% 7116 2444 AUUUUAaAGCCUAUGUGGA 0.1%
7070 2437 UUCAUGUAUUCAGAcUUcC 2.2% 7117 2444 AUUUUAGAGCCUAUGUaGA 0.2%
2438 2438 AAUUUGCAGCAAUAUGCAC 95.1% 7118 2444 uUUUUAGAGCCUAUGUGGA 0.1%
7071 2438 AAUUUGCAGCAAUAUGCAu 0.1% 7119 2444 AcUUUAGAaCCUAUGUGGA 0.6%
7072 2438 AAUUUGCAGCAAUAUCuAC 0.2% 7120 2444 ccUUUAGAGCCUAUGUGGA 0.1%
7073 2438 AAUUUGCgGCAAUAUGCAC 0.3% 2445 2445 GUAUUCAGAUUUUCAUUUC 94.6%
7074 2438 AAUUcGCAGCAAUAUGCAC 0.1% 7121 2445 GUAUUCgGAUUUUCAUUUC 0.1%
7075 2438 AAUUUGCuGCAAUAUGCAC 0.3% 7122 2445 GUAcUCAGAUUUUCAUUUC 0.1%
7076 2438 AAUUUGCuGCAAUAUGuAC 0.1% 7123 2445 GUAUUCAGAcUUUCAUUUC 0.1%
7077 2438 AgUUUGCuGCAAUAUGCAC 1.5% 7124 2445 GUAUUCAGAUUUUCAcUUC 0.9%
7078 2438 AgUUcGCuGCAAUAUGCAC 2.1% 7125 2445 GUAUUCgGAUUUUCAcUUu 1.8%
2439 2439 ACAAACAAAUUUGCAGCAA 95.0% 7126 2445 GUAUUCAGAcUUcGAUUUC 2.1%
7079 2439 ACAAACAAAUUUGCgGCAA 0.3% 7127 2445 GUAUUCAGAUUUcCAcUUC 0.1%
7080 2439 ACgAACAAAUUUGCAGCAA 0.3% 7128 2445 GUAUUCAGAcUUcCAUUUu 0.1%
7081 2439 ACAAACAAAUUcGCAGCAA 0.1% 7129 2445 GUAUUCgGAUUUcCAcUUC 0.1%
7082 2439 ACAAACAAAUUUGCuGCAA 0.1% 2446 2446 GCAUCCUGUGCAGCAAUGG 94.6%
7083 2439 ACuAACAAAUUUGCAGCAA 0.1% 7130 2446 GCAUCCUGUGCAGCgAUGG 0.2%
7084 2439 ACgAACAAAUUUGCuGCAA 0.3% 7131 2446 GCAUCCUGUGuAGCAAUGG 0.1%
7085 2439 ACgAACAAgUUUGCuGCAA 1.5% 7132 2446 GCAUCuUGUGCAGCAAUGG 1.1%
7086 2439 ACAAACAAgUUcGCuGCAA 1.8% 7133 2446 GCgUCCUGUGCAGCAAUGG 0.2%
2440 2440 CAAACAAAUUUGCAGCAAU 95.0% 7134 2446 GCAUCCUGUGCAGCcAUGG 1.7%
7087 2440 CAAACAAAUUUGCgGCAAU 0.3% 7135 2446 GCAUCuUGUGCAGCcAUGG 2.0%
7088 2440 CgAACAAAUUUGCAGCAAU 0.3% 7136 2446 GCAUCuUGUGCAGuuAUGG 0.1%
7089 2440 CAAACAAAUUcGCAGCAAU 0.1% 2447 2447 AUGCAUCCUGUGCAGCAAU 94.6%
7090 2440 CAAACAAAUUUGCuGCAAU 0.1% 7137 2447 AUGCAUCCUGUGCAGCgAU 0.2%
7091 2440 CuAACAAAUUUGCAGCAAU 0.1% 7138 2447 AUGCAUCCUGUGuAGCAAU 0.1%
7092 2440 CgAACAAAUUUGCuGCAAU 0.3% 7139 2447 AUGCAUCuUGUGCAGCAAU 1.1%
7093 2440 CgAACAAgUUUGCuGCAAU 1.5% 7140 2447 AUGCgUCCUGUGCAGCAAU 0.2%
7094 2440 CAAACAAgUUcGCuGCAAU 1.8% 7141 2447 AUGCAUCCUGUGCAGCcAU 1.7%
2441 2441 AAACAAAUUUGCAGCAAUA 95.0% 7142 2447 AUGCAUCuUGUGCAGCcAU 2.0%
7095 2441 AAACAAAUUUGCgGCAAUA 0.3% 7143 2447 AUGCAUCuUGUGCAGuuAU 0.1%
7096 244U gAACAAAUUUGCAGCAAUA 0.3% 2448 2448 UAUUCAGAUUUUCAUUUCA 94.6%
7097 2441 AAACAAAUUcGCAGCAAUA 0.1% 7144 2448 UAUUCgGAUUUUCAUUUCA 0.1%
7098 2441 AAACAAAUUUCGuGCAAUA 0.1% 7145 2448 UAcUCAGAUUUUCAUUUCA 0.1%
7099 2441 uAACAAAUUUGCAGCAAUA 0.1% 7146 2448 UAUUCAGAcUUUCAUUUCA 0.1%
7100 2441 gAACAAAUUUGCuGCAAUA 0.3% 7147 2448 UAUUCAGAUUUUCAcUUCA 0.9%
7101 2441 gAACAAgUUUGCuGCAAUA 1.5% 7148 2448 UAUUCgGAUUUUCAcUUuA 1.5%
7102 2441 AAACAAgUUcGCuGCAAUA 1.8% 7149 2448 UAUUCAGAcUUcCAUUUCA 2.1%
2443 2442 UUUUAGAGCCUAUGUGGAU 94.9% 7150 2448 UAUUCAGAUUUcCAcUUCA 0.1%
7103 2442 cUUUAGAGCCUAUGUGGAU 4.2% 7151 2448 UAUUCAGAcUUcCAUUUuA 0.1%
7104 2442 UUUUAaAGCCUAUGUGGAU 0.1% 7152 2448 UAUUCgGAUUUcCAcUUCA 0.1%
7105 2442 UUUUAGAGCCUAUGUaGAU 0.2% 2449 2449 GAAACAAACAAAUUUGCAG 94.6%
7106 2442 cUUUAGAaCCUAUGUGGAU 0.6% 7153 2449 GAAACAAACAAAUUUGCgG 0.3%
2443 2443 AAUUUUAGAGCCUAUGUGG 94.7% 7154 2449 GAAACgAACAAAUUUGCAG 0.3%
7155 2449 GAgACAAACAAAUUUGCAG 0.4% 7203 2455 AcUCAGAUUUUCAUUUCAU 0.1%
7156 2449 GAAACAAACAAAUUcGCAG 0.1% 7204 2455 AUUCAGAcUUUCAUUUCAU 0.1%
7157 2449 GAAACAAACAAAUUUGCuG 0.1% 7205 2455 AUUCAGAUUUUCAcUUCAU 0.9%
7158 2449 GAAACuAACAAAUUUGCAG 0.1% 7206 2455 AUUCgCAUUUUCAcUUuAU 1.5%
7159 2449 GAAACgAACAAAUUUGCuG 0.3% 7207 2455 AUUCAGAcUUcCAUUUCAU 2.1%
7160 2449 GAAACgAACAAgUUUGCuG 1.5% 7208 2455 AUUCAGAUUUcCAcUUCAU 0.1%
7161 2449 GAAACAAACAAgUUcGCuG 1.8% 7209 2455 AUUCAGAcUUcCAUUUuAU 0.1%
2450 2450 UGUAUUCAGAUUUUCAUUU 94.6% 7210 2455 AUUCgGAUUUcCAcUUCAU 0.1%
7162 2450 UGUAUUCgGAUUUUCAUUU 0.1% 2456 2456 AUGUAUUCAGAUUUUCAUU 94.6%
7163 2450 UGUAcUCAGAUUUUCAUUU 0.1% 7211 2456 AUGUAUUCgCAUUUUCAUU 0.1%
7164 2450 UGUAUUCAGAcUUUCAUUU 0.1% 7212 2456 AUGUAcUCAGAUUUUCAUU 0.1%
7165 2450 UGUAUUCAGAUUUUCAcUU 0.9% 7213 2456 AUGUAUUCAGAcUUUCAUU 0.1%
7166 2450 UGUAUUCgGAUUUUCAcUU 1.8% 7214 2456 AUGUAUUCAGAUUUUCAcU 0.9%
7167 2450 UGUAUUCAGAcUUcCAUUU 2.2% 7215 2456 AUGUAUUCgGAUUUUCAcU 1.8%
7168 2450 UGUAUUCAGAUUUcCAcUU 0.1% 7216 2456 AUGUAUUCAGAcUUcCAUU 2.2%
7169 2450 UGUAUUCgGAUUUcCAcUU 0.1% 7217 2456 AUGUAUUCAGAUUUcCAcU 0.1%
2451 2451 AAUGCAUCCUGUGCAGCAA 94.6% 7218 2456 AUGUAUUCgGAUUUcCAcU 0.1%
7170 2451 AAUGCAUCCUGUGCAGCgA 0.2% 2457 2457 UGCAUCCUGUGCAGCAAUG 94.6%
7171 2451 AAUGCAUCCUGUGuAGCAA 0.1% 7219 2457 UGCAUCCUGUGCAGCgAUG 0.2%
7173 2451 AAUGCAUCuUGUGCAGCAA 1.1% 7220 2457 UGCAUCCUGUGuAGCAAUG 0.1%
7173 2451 AAUGCgUCCUGUGCAGCAA 0.2% 7221 2457 UGCAUCuUGUGCAGCAAUG 1.1%
7174 2451 AAUGCAUCCUGUGCAGCcA 1.7% 7222 2457 UGCgUCCUGUGCAGCAAUG 0.2%
7175 2451 AAUGCAUCuUGUGCAGCcA 2.0% 7223 2457 UGCAUCCUGUGCAGCcAUG 1.7%
7176 2451 AAUGCAUCuUGUGCAGuuA 0.1% 7224 2457 UGCAUCuUGUGCAGCcAUG 2.0%
2452 2452 AACAAACAAAUUUGCAGCA 94.6% 7225 2457 UGCAUCuUGUGCAGuuAUG 0.1%
7177 2452 AACAAACAAAUUUGCgGCA 0.3% 2458 2458 CAUGUAUUCAGAUUUUCAU 94.5%
7178 2452 AACgAACAAAUUUGCAGCA 0.3% 7226 2458 CAUGUAUUCgGAUUUUCAU 0.1%
7179 2452 gACAAACAAAUUUGCAGCA 0.4% 7227 2458 uAUGUAUUCAGAUUUUCAU 0.1%
7180 2452 AACAAACAAAUUcGCAGCA 0.1% 7228 2458 CAUGUAcUCAGAUUUUCAU 0.1%
7181 2452 AACAAACAAAUUUGCuGCA 0.1% 7229 2458 CAUGUAUUCAGAcUUUCAU 0.1%
7182 2452 AACuAACAAAUUUGCAGCA 0.1% 7230 2458 CAUGUAUUCAGAUUUUCAc 0.9%
7183 2452 AACgAACAAAUUUGCuGCA 0.3% 7231 2458 CAUGUAUUCgGAUUUUCAc 1.8%
7184 2452 AACgAACAAgUUUGCuGCA 1.5% 7232 2458 CAUGUAUUCAGAcUUcCAU 2.2%
7185 2452 AACAAACAAgUUcGCuGCA 1.8% 7233 2458 CAUGUAUUCAGAUUUcCAc 0.1%
2453 2453 AAACAAACAAAUUUGCAGC 94.6% 7234 2458 CAUGUAUUCgGAUUUcCAc 0.1%
7186 2453 AAACAAACAAAUUUGCgGC 0.3% 2459 2459 AGAAUUUUAGAGCCUAUGU 94.3%
7187 2453 AAACgAACAAAUUUGCAGC 0.3% 7235 2459 AGAgUUUUAGAGCCUAUGU 0.1%
7188 2453 AgACAAACAAAUUUGCAGC 0.4% 7236 2459 AaAAUUUUAGAGCCUAUGU 0.5%
7189 2453 AAACAAACAAAUUcGCAGC 0.1% 7237 2459 AGAAcUUUAGAGCCUAUGU 0.5%
7190 2453 AAACAAACAAAUUUGCuGC 0.1% 7238 2459 AGAAUUUUAaAGCCUAUGU 0.1%
7191 2453 AAACuAACAAAUUUGCAGC 0.1% 7239 2459 AGAuUUUUAGAGCCUAUGU 0.1%
7192 2453 AAACgAACAAAUUUGCuGC 0.3% 7240 2459 AaAAcUUUAGAGCCUAUGU 3.5%
7193 2453 AAACgAACAAgUUUGCuGC 1.5% 2460 2460 GAGAAUUUUAGAGCCUAUG 94.2%
7194 2453 AAACAAACAAgUUcGCuGC 1.8% 7241 2460 GAGAgUUUUAGAGCCUAUG 0.1%
2454 2454 CAUCCUGUGCAGCAAUGGA 94.6% 7242 2460 aAGAAUUUUAGAGCCUAUG 0.1%
7195 2454 CAUCCUGUGCAGCgAUGGA 0.2% 7243 2460 GAaAAUUUUAGAGCCUAUG 0.5%
7196 2454 CAUCCUGUGuAGCAAUGGA 0.1% 7244 2460 GAGAAcUUUAGAGCCUAUG 0.5%
7197 2454 CAUCuUGUGCAGCAAUGGA 1.1% 7245 2460 GAGAAUUUUAaAGCCUAUG 0.1%
7198 2454 CgUCCAGUGCAGCAAUGGA 0.2% 7246 2460 GAGAuUUUUAGAGCCUAUG 0.1%
7199 2454 CAUCCUGUGCAGCcAUGGA 1.7% 7247 2460 GAaAAcUUUAGAGCCUAUG 3.5%
7200 2454 CAUCuUGUGCAGCcAUGGA 2.0% 2461 2461 GAUUUUCAUUUCAUCAAUG 94.2%
7201 2454 CAUCuUGUGCAGuuAUGGA 0.1% 7248 2461 GAUUUUCAUUUCAUuAAUG 0.5%
2455 2455 AUUCAGAUUUUCAUUUCAU 94.6% 7249 2461 GAcUUUCAUUUCAUCAAUG 0.1%
7202 2455 AUUCgCAUUUUCAUUUCAU 0.1% 7250 2461 GAUUUUCAcUUCAUCAAUG 0.7%
7251 2461 GAUUUUCAcUUCAUcgAUG 0.1% 7298 2468 GUUCAGGCUCUcAGGGACA 0.3%
7252 2461 CAUUUcCAcUUCAUCAAUG 0.2% 7299 2468 GUUCAGGCUCUUAaGGACA 0.2%
2462 2462 UGAGAAUUUUAGAGCCUAU 94.2% 7300 2468 GUUCAGGCUCUUAGaGACA 0.2%
7253 2462 UGAGAgUUUUAGAGCCUAU 0.1% 7301 2468 GUUCAGGCUCUUcGGGACA 0.3%
7254 2462 UaAGAAUUUUAGAGCCUAU 0.1% 7302 2468 GcUCAGGCaCUUAGGGACA 1.8%
7255 2462 UGAaAAUUUUAGAGCCUAU 0.5% 7303 2468 GUUCAaGCaCUUAGGGACA 2.3%
7256 2462 UGAGAAcUUUAGAGCCUAU 0.5% 7304 2468 GUUCAGGCUCUUAAGGAaA 0.1%
7257 2462 UGAGAAUUUUAaAGCCUAU 0.1% 2469 2469 UUCAGGCUCUUAGGGACAA 94.1%
7258 2462 UGAGAuUUUUAGAGCCUAU 0.1% 7305 2469 UUCAGGCUCUUAGGGACAg 0.1%
7259 2462 UGAaAAcUUUAGAGCCUAU 3.5% 7306 2469 UUCAGGCUCUUAGGGAuAA 0.1%
2463 2463 UUGAGAAUUUUAGAGCCUA 94.2% 7307 2469 UUCAGGCUuUUAGGGACAA 0.1%
7260 2463 UUGAGAgUUUUAGAGCCUA 0.1% 7308 2469 UcCAGGCUCUUAGGGACAA 0.1%
7261 2463 UUaAGAAUUUUAGAGCCUA 0.1% 7309 2469 UUCAGGCcCUUAGGGACAA 0.1%
7262 2463 UUGAaAAUUUUAGAGCCUA 0.5% 7310 2469 UUCAGGCUCUcAGGGACAA 0.3%
7263 2463 UUGAGAAcUUUAGAGCCUA 0.5% 7311 2469 UUCAGGCUCUUAaGGACAA 0.2%
7264 2463 UUGAGAAUUUUAaAGCCUA 0.1% 7312 2469 UUCAGGCUCUUAGaGACAA 0.2%
7265 2463 UUGAGAuUUUUAGAGCCUA 0.1% 7313 2469 UUCAGGCUCUUcGGGACAA 0.3%
7266 2463 UUGAaAAcUUUAGAGCCUA 3.5% 7314 2469 cUCAGGCaCUUAGGGACAA 1.8%
2464 2464 AUUUUCAUUUCAUCAAUGA 94.2% 7315 2469 UUCAaGCaCUUAGGGACAA 2.3%
7267 2464 AUUUUCAUUUCAUuAAUGA 0.5% 7316 2469 UUCAGGCUCUUAaGGAaAA 0.1%
7268 2464 AcUUUCAUUUCAUCAAUGA 0.1% 2470 2470 AGAUUUUCAUUUCAUCAAU 94.1%
7269 2464 AUUUUCAcUUCAUCAAUGA 0.7% 7317 2470 AGAUUUUCAUUUCAUuAAU 0.5%
7270 2464 AUUUUCAcUUCAUCgAUGA 0.1% 7318 2470 gGAUUUUCAUUUCAUCAAU 0.1%
7271 2464 AUUUcCAcUUCAUCAAUGA 0.2% 7319 2470 ACAcUUUCAUUUCAUCAAU 0.1%
2465 2465 UCAGAUUUUCAUUUCAUCA 94.1% 7320 2470 AGAUUUUCAcUUCAUCAAU 0.7%
7272 2465 UCAGAUUUUCAUUUCAUuA 0.5% 7321 2470 AGAUUUUCAcUUCAUCgAU 0.1%
7273 2465 UCgGAUUUUCAUUUCAUCA 0.1% 7322 2470 AGAUUUcCAcUUCAUCAAU 0.1%
7274 2465 UCAGAcUUUCAUUUCAUCA 0.1% 7323 2470 gGAUUUcCAcUUCAUCAAU 0.1%
7275 2465 UCAGAUUUUCAcUUCAUCA 0.7% 2471 2471 UUCAGAUUUUCAUUUCAUC 94.0%
7276 2465 UCAGAUUUUCAcUUCAUCg 0.1% 7324 2471 UUCAGAUUUUCAUUUCAUu 0.5%
7277 2465 UCAGAUUUcCAcUUCAUCA 0.1% 7325 2471 UUCgGAUUUUCAUUUCAUC 0.1%
7278 2466 UCgGAUUUcCAcUUCAUCA 0.1% 7326 2471 cUCAGAUUUUCAUUUCAUC 0.1%
2466 2466 GAAUUUUAGAGCCUAUGUG 94.1% 7327 2471 UUCAGAcUUUCAUUUCAUC 0.1%
7279 2466 GAgUUUUAGAGCCUAUGUG 0.1% 7328 2471 UUCAGAUUUUCAcUUCAUC 0.9%
7280 2466 aAAUUUUAGAGCCUAUGUG 0.5% 7329 2471 UUCAGAUUUcCAcUUCAUC 0.1%
7281 2466 GAAcUUUAGAGCCUAUGUG 0.5% 7330 2471 UUCAGAcUUcCAUUUCAUu 2.1%
7282 2466 GAAUUUUAaAGCCUAUGUG 0.1% 7331 2471 UUCgGAUUUcCAcUUCAUC 0.1%
7283 2466 GAAUUUUAGAGCCUAUGUa 0.2% 2472 2472 AGAGGCGAAGAAACAAUUG 93.7%
7284 2466 GAuUUUUAGAGCCUAUGUG 0.1% 7332 2472 AGAGGCGAAGAgACAAUUG 5.3%
7285 2466 aAAcUUUAGAGCCUAUGUG 3.5% 7333 2472 AGAGGCGAgGAAACAAUUG 0.2%
2467 2467 CAGAUUUUCAUUUCAUCAA 94.1% 7334 2472 AGAGGCGAAaAAACAAUUG 0.1%
7286 2467 CAGAUUUUCAUUUCAUuAA 0.5% 7335 2472 AGAGGCGAAGAAACAAUcG 0.2%
7287 2467 CgGAUUUUCAUUUCAUCAA 0.1% 7336 2472 AGAGGCGAAGAAACnAUUG 0.1%
7288 2467 CAGAcUUUCAUUUCAUCAA 0.1% 7337 2472 AGAGGaGAAGAgACAAUUG 0.3%
7289 2467 CAGAUUUUCAcUUCAUCAA 0.7% 2473 2473 GAGGCGAAGAAACAAUUGA 93.7%
7290 2467 CAGAUUUUCAcUUCAUCgA 0.1% 7338 2473 GAGGCGAAGAgACAAUUGA 5.3%
7291 2467 CAGAUUUcCAcUUCAUCAA 0.1% 7339 2473 GAGGCGAgGAAACAAUUGA 0.2%
7293 2467 CgGAUUUcCAcUUCAUCAA 0.1% 7340 2473 GAGGCGAAaAAACAAUUGA 0.1%
2468 2468 GUUCAGGCUCUUAGGGACA 94.1% 7341 2473 GAGGCGAAGAAACAAUcGA 0.2%
7293 2468 GUUCAGGCUCUUAGGGAuA 0.1% 7342 2473 GAGGCGAAGAAACnAUUGA 0.1%
7294 2468 GUUCAGGCUuUUAGGGACA 0.1% 7343 2473 GAGGaGAAGAgACAAUUGA 0.3%
7295 2468 aUUCAGGCUCUUAGGGACA 0.1% 2474 2474 GGCGAAGAAACAAUUGAAG 93.5%
7296 2468 GUcCAGGCUCUUAGGGACA 0.1% 7344 2474 GGCGAAGAAACAAUUGAgG 0.2%
7297 2468 GUUCAGGCcCUUAGGGACA 0.1% 7345 2474 GGCGAAGAgACVAAUUGAAG 5.3%
7346 2474 GGCGAgGAAACAAUUGAAG 0.2% 7393 2481 UGAAAUGGGGgAUGGAaAU 2.2%
7347 2474 GGCGAAaAAACAAUUGAAG 0.1% 7394 2481 UGAAAUGGGGgAUGGAuAU 0.2%
7348 2474 GGCGAAGAAACAAUcGAAG 0.2% 7395 2481 UGAAAUGGGGAAUaGAGcU 0.1%
7349 2474 GGCGAAGAAACnAUUGAAG 0.1% 7396 2481 UGAAAUGGGGcAUGGAaAU 1.8%
7350 2474 GGaGAAGAgACAAUUGAAG 0.3% 7397 2481 UGAAgUGGGGuAUGGAaAU 0.1%
2475 2475 CGAAGAAACAAUUGAAGAA 93.5% 24B2 2482 AAUGGGGAAUGGAGAUGAG 93.3%
7351 2475 CGAAGAAACAAUUGAgGAA 0.2% 7398 2482 AAUGGGGgAUGGAGAUGAG 1.2%
7352 2475 CGAAGAgACAAUUGAAGAA 5.3% 7399 2482 AAUGGGGAAUGGAaAUGAG 0.6%
7353 2475 CGAgGAAACAAUUGAAGAA 0.2% 7400 2482 AAUGGGGAAUGGAGcUGAG 0.4%
7354 2475 CGAAaAAACAAUUGAAGAA 0.1% 7401 2482 AAUGGGGgAUGGAaAUGAG 2.2%
7355 2475 CGAAGAAACAAUcGAAGAA 0.2% 7402 2482 AAUGGGGgAUGGAuAUGAG 0.2%
7356 2475 CGAAGAAACnAUUGAAGAA 0.1% 7403 2482 AAUGGGGAAUaGAGcUGAG 0.1%
7357 2475 aGAAGAgACAAUUGAAGAA 0.3% 7404 2482 AAUGGGGcAUGGAaAUGAG 1.8%
2476 2476 GCGAAGAAACAAUUGAAGA 93.5% 7405 2482 AgUGGGGuAUGGAaAUGAG 0.1%
7358 2476 GCGAAGAAACAAUUGAgGA 0.2% 2483 2483 CACAUUUUCUCAUUCACUG 93.3%
7359 2476 GCGAAGAgACAAUUGUAGA 5.3% 7406 2483 CACAUUUUCUCgUUCACUG 0.7%
7360 2476 GCGAgGAAACAAUUGAAGA 0.2% 7407 2483 CACAUUUUuUCAUUCACUG 1.1%
7361 2476 GCGAAaAAACAAUUGAAGA 0.1% 7408 2483 CACAUUUUCUCgUUuACUG 0.1%
7362 2476 GCGAAGAAACAAUcGAAGA 0.2% 7409 2483 CACAUcUUCUCAUUCACUG 2.3%
7363 2476 GCGAAGAAACnAUUGAAGA 0.1% 7410 2483 CACAUUUUCUCAUUCACcG 0.1%
7364 2476 GaGAAGAgACAAUUGAAGA 0.3% 7411 2483 CACAUUUUCUCAUUCACUa 0.1%
2477 2477 AGGCGAAGAAACAAUUGAA 93.5% 7412 2483 CACAUUUUCUCcUUCACUG 0.1%
7365 2477 AGGCGAAGAAACAAUUGAg 0.2% 7413 2483 CACAUcUUuUCAUUCACUG 0.3%
7366 2477 AGGCGAAGAgACAAUUGAA 5.3% 7414 2483 CACAUaUUCUCAUUCACaG 1.7%
7367 2477 AGGCGAgGAAACAAUUGAA 0.2% 7415 2483 CACAUaUUCUCAUUCACgG 0.1%
7368 2477 AGGCGAAaAAACAAUUGAA 0.1% 2484 2484 AAAUGGGGAAUGGAGAUGA 93.3%
7369 2477 AGGCGAAGAAACAAUcGAA 0.2% 7416 2484 AAAUGGGGgAUGGAGAUGA 1.2%
7378 2477 AGGCGAAGAAACnAUUGAA 0.1% 7417 2484 AAAUGGGGAAUGGAaAUGA 0.6%
7371 2477 AGGaGAAGAgACAAUUGAA 0.3% 7418 2484 AAAUGGGGAAUGGAGcUGA 0.4%
2478 2478 GAAGAAACAAUUGAAGAAA 93.5% 7419 2484 AAAUGGGGgAUGGAaAUGA 2.2%
7373 2478 GAAGAAACAAUUGAgGAAA 0.2% 7420 2484 AAAUGGGGgAUGGAuAUGA 0.2%
7373 2478 GAAGAgACAAUUGAAGAAA 5.7% 7421 2484 AAAUGGGGAAUaGAGcUGA 0.1%
7374 2478 GAgGAAACAAUUGAAGAAA 0.2% 7422 2484 AAAUGGGGcAUGGAaAUGA 1.8%
7375 2478 GAAaAACAAUUGAAGaAAA 0.1% 7423 2484 AAgUGGGGuAUGGAaAUGA 0.1%
7376 2478 GAAGAAACAAUcGAAGAAA 0.2% 2485 2485 GAAAUGGGGAAUGGAGAUG 93.3%
7377 2478 GAAGAAACnAUUGAAGAAA 0.1% 7424 2485 GAAAUGGGGgAUGGAGAUG 1.2%
2479 2479 AAAUGAAAUGGGGAAUGGA 93.4% 7425 2485 GAAAUGGGGAAUGGAaAUG 0.6%
7378 2479 AAAUGAAAUGGGGgAUGGA 1.4% 7426 2485 GAAAUGGGGAAUGGAGcUG 0.4%
7379 2479 AgAUGAAAUGGGGAAUGGA 1.0% 7427 2485 GAAAUGGGGgAUGGGaAUG 2.2%
7380 2479 AgAUGAAAUGGGGgAUGGA 2.2% 7428 2485 GAAAUGGGGgAUGGAuAUG 0.2%
7381 2479 AAAUGAAAUGGGGAAUaGA 0.1% 7429 2485 GAAAUGGGGAAUaGAGcUG 0.1%
7382 2479 AAAUGAAAUGGGGcAUGGA 1.8% 7430 2485 GAAAUGGGGcAUGGAaAUG 1.8%
7383 2479 AAAUGAAgUGGGGuAUGGA 0.1% 7431 2485 GAAgUGGGGuAUGGAaAUG 0.1%
2480 2480 AAUAUGAAAUGGGGAAUGG 93.4% 2486 2486 AUGAAAUGGGGAAUGGAGA 93.3%
7384 2480 AAAAUGAAAUGGGGgAUGG 1.4% 7432 2486 AUGAAAUGGGGgAUGGAGA 1.2%
7385 2480 AAgAUGAAAUGGGGAAUGG 1.0% 7433 2486 AUGAAAUGGGGAAUGGAaA 0.6%
7386 2480 AAgAUGAAAUGGGGgAUGG 2.2% 7434 2486 AUGAAUUGGGGAAUGGAGc 0.4%
7387 2480 AAAAUGAAAUGGGGAAUaG 0.1% 7435 2486 AUGAAAUGGGGgAUGAGaA 2.2%
7388 2480 AAAAUGAAAUGGGGcAUGG 1.8% 7436 2486 AUGAAAUGGGGgAUGGAuA 0.2%
7389 2480 AAAAUGAAgUGGGGuAUGG 0.1% 7437 2486 AUGAAAUGGGGAAUaGAGc 0.1%
2481 2481 UGAAAUGGGGAAUGGAGAU 93.3% 7438 2486 AUGAAAUGGGGcAUGGAaA 1.8%
7390 2481 UGAAAUGGGGgAUGGAGAU 1.2% 7439 2486 AUGAAgUGGGGuAUGGAaA 0.1%
7391 2481 UGAAAUGGGGAAUGGAaAU 0.6% 2487 2487 ACAUUUUCUCAUUCACUGG 93.2%
7392 2481 UGAAAUGGGGAAUGGAGcU 0.4% 7440 2487 ACAUUUUCUCgUUCACUGG 0.7%
7441 2487 ACAUUUUuUCAUUCACUGG 1.1% 7489 2493 GUgAACUUUGUGAGuAUGG 2.2%
7442 2487 ACAUUUUCUCgUUuACUGG 0.1% 7490 2493 GUAAACUUUaUCAGCAUGG 0.1%
7443 2487 ACAUcUUCUCAUUCACUGG 2.3% 7491 2493 GUAAAuUUUGUaAGuAUGG 0.2%
7444 2487 ACAUUUUCUCAUUCACcGG 0.1% 2494 2494 CAGUCCGAAAGAGGCGAAG 92.5%
7445 2487 ACAUUUUCUCAUUCACUaG 0.1% 7492 2494 CAGUCCGAAAGAGGCGAgG 0.2%
7446 2487 ACAUUUUCUCAUUCACUGa 0.1% 7493 2494 CAGUCCGAgAGAGGCGAAG 3.7%
7447 2487 ACAUUUUCUCcUUCACUGG 0.1% 7494 2494 CAGUCuGAAAGAGGCGAAG 0.2%
7448 2487 ACAUcUUuUCAUUCACUGG 0.3% 7495 2494 CAaUCCGAAAGAGGCGAAG 1.0%
7449 2487 ACAUaUUCUCAUUCACaGG 1.7% 7496 2494 CAGUCaGAAAGAGGCGAAG 0.1%
7450 2487 ACAUaUUCUCAUUCACgGG 0.1% 7497 2494 CAGUCCGAAAGAGGCGAAa 0.1%
2483 2488 AAAGAGGCGAAGAAACAAU 92.8% 7498 2494 CUGUCCGAAAGAGGCGAAG 0.1%
7451 2488 AAAGAGGCGAAGAgACAAU 1.2% 7499 2494 CAaUCCGAgAGAGGCGAAG 1.7%
7452 2488 AAAGAGGCGAgGAAACAAU 0.2% 7500 2494 CAGUCCGAgAGAGGaGAAG 0.3%
7453 2488 AgAGAGGCGAAGAAACAAU 1.2% 2495 2495 AGUCCGAAAGAGGCGAAGA 92.5%
7454 2488 AgAGAGGCGAAGAgACAAU 4.2% 7501 2495 AGUCCGAAAGAGGCGAgGA 0.2%
7455 2488 AAAGAGGCGAAaAAACAAU 0.1% 7502 2495 AGUCCGAgAGAGGCGAAGA 3.7%
7456 2488 AgAGAGGCGAAGAAACnAU 0.1% 7503 2495 AGUCuGAAAGAGGCGAAGA 0.2%
7457 2488 AgAGAGGaGAAGAgACAAU 0.3% 7504 2495 AaUCCGAAAGAGGCGAAGA 1.0%
2489 2489 GAAAGAGGCGAAGAAACAA 92.8% 7505 2495 AGUCaGAAAGAGCGAAUGA 0.1%
7458 2489 GAAAGAGGCGAAGAgACAA 1.2% 7506 2495 AGUCCGAAaGAGGCGAAaA 0.1%
7459 2489 GAAAGAGGCGAgGAAACAA 0.2% 7507 2495 uGUCCGAAAGAGGCGAAGA 0.1%
7460 2489 GAaAGAGGCGAAGAAACAA 1.2% 7508 2495 AaUCCGAgAGAGGCGAAGA 1.7%
7461 2489 GAgAGAGGCGAAGAgACAA 4.2% 7509 2495 AGUCCGAgAGAGGaGUAGA 0.3%
7462 2489 GAAAGAGGCGAAaAAACAA 0.1% 2496 2496 CGAAAGAGGCGAAGAAACA 92.4%
7463 2489 GAgAGAGGCGAAGAAACnA 0.1% 7510 2496 CGAAAGAGGCGAAGAgACA 1.2%
7464 2489 GAgAGAGGaGAAGAgACAA 0.3% 7511 2496 CGAAAGAGGCGAgGAAACA 0.2%
2490 2490 AAUGAAAUGGGGAAUGGAG 92.8% 7512 2496 CGAgAGAGGCGAAGAAACA 1.2%
7465 2490 AAUGAAAUGGGGgAUGGAG 1.2% 7513 2496 uGAAAGAGGCGAAGAAACA 0.2%
7466 2490 gAUGAAAUGGGGAAUGGAG 1.0% 7514 2496 CGAgAGAGGCGAAGAgACA 4.2%
7467 2490 AAUGAAAUGGGGAAUaGAG 0.1% 7515 2496 aGAAAGAGGCGAAGAAACA 0.1%
7464 2490 AAUGAAAUGGGGAAUGGAa 0.6% 7516 2496 CGAAAGAGGCGAAaAAACA 0.1%
7469 2490 AAUGAAAUGGGGgAUGGAa 0.2% 7517 2496 CGAgAGAGGCGAAGAAACn 0.1%
7470 2490 gAUGAAAUGGGGgAUGGAa 2.0% 7518 2496 CGAgAGAGGaGAAGAgACA 0.3%
7471 2490 gAUGAAAUGGGGgAUGGAu 0.2% 2497 2497 UGGUAAACUUUGUGAGCAU 92.4%
7473 2490 AAUGAAAUGGGGcAUGGAa 1.8% 7519 2497 UGGUAAAuUUUGUGAGCAU 3.0%
7473 2490 AAUGAAgUGGGGuAUGGAa 0.1% 7520 2497 UGGUAAAuUUUGUGAGuAU 1.7%
2491 2491 UAAACUUUGUGAGCAUGGA 92.5% 7521 2497 UGGUgAACUUUGUGAGUAU 2.2%
7474 2491 UAAAuUUUGUGAGCAUGGA 3.2% 7522 2497 UGGUAAACUUUaUGAGCAU 0.1%
7475 2491 UAAAuUUUGUGAGuAUGGA 1.7% 7523 2497 UuGUAAACUUUGUGAGCAU 0.1%
7476 2491 UgAACUUUGUGAGuAUGGA 2.2% 7524 2497 UaGUAAAuUUUGUGAGCAU 0.2%
7477 2491 UAAACUUUaUGAGCAUGGA 0.1% 7525 2497 UGGUAAAuUUUGUaAGuAU 0.2%
7478 2491 UAAAuUUUGUaAGuAUGGA 0.2% 2498 2498 GUGGUAAAGUUUGUGAGCA 92.4%
2492 2492 AAGAGGCGAAGAAACAAUU 92.5% 7526 2498 GUGGUAAAuUUUGUGAGCA 3.0%
7479 2492 AAGAGGCGAAGAgACAAUU 1.2% 7527 2498 GUGGUAAAuUUUGUGAGuA 1.7%
7480 2492 AAGAGGCGAgGAAACAAUU 0.2% 7528 2498 GUGGUgAACUUUGUGAGuA 2.2%
7481 2492 gAGAGGCGAAGAAACAAUU 1.2% 7529 2498 GUGGUAAACUUUaUGAGCA 0.1%
7482 2492 gAGAGGCGAAGAgACAAUU 4.2% 7530 2498 GUuGUAAACUUUGUGAGCA 0.1%
7483 2492 AAGAGGCGAAaAAACAAUU 0.1% 7531 2498 GUaGUAAAuUUUGUGAGCA 0.2%
7484 2492 AAGAGGCGAAGAAACAAUc 0.2% 7532 2498 GUGGUAAAuUUUGUaAGuA 0.2%
7485 2492 gAGAGGCGAAGAAACnAUU 0.1% 2499 2499 UUUGUGCGACAAUGCUUCA 92.4%
7486 2492 gAGAGGaGAAGAgACAAUU 0.3% 7533 2499 UUUGUGCGACAAUGCUUuA 0.5%
2493 2493 GUAAACUUUGUGAGCAUGG 92.5% 7534 2499 UUUGUGCGACAAUGuUUCA 2.8%
7487 2493 GUAAAuUUUGUGAGCAUGG 3.2% 7535 2499 UUUGUGCGACAgUGCUUCA 1.2%
7488 2493 GUAAAuUUUGUGAGuAUGG 1.7% 7536 2499 UUUGUGCGgCAAUGCUUCA 0.2%
7537 2499 UgUGUGCGACAAUGCUUCA 0.1% 7586 2504 CGcCAGUCCGAAAGAGGCG 0.2%
7538 2499 UUcGUGCGAGAAUGCUUCA 0.1% 7587 2504 CGUCAaUCCGAAAGAGGCG 1.0%
7539 2499 UUUGUGaGACAAUGCUUCA 0.21% 7588 2504 CGUCAGUCaGAAAGAGGCG 0.1%
7540 2499 UUUGUGCGACAAUGCUUUu 0.1% 7589 2504 CGUCuGUCCGAAAGAGGCG 0.1%
7541 2499 UUUGUGgGACAAUGCUUCA 0.1% 7590 2504 CGUCAaUCCGAgAGAGGCG 1.7%
7542 2499 UUUGUaCGACAAUGCUUuA 1.6% 7591 2504 CGUCAGUCCGAgAGAGGaG 0.3%
2500 2500 UCGUCAGUCCGAAAGAGGC 92.4% 2505 2505 GUCAGUCCGAAAGAGGCGA 92.4%
7543 2500 UCGUCAGUCCGAgAGAGGC 3.7% 7592 2505 GUCAGUCCGAgAGAGGCGA 3.7%
7544 2500 UCGUCAGUCuGAAAGAGGC 0.2% 7593 2505 GUCAGUCUGAAAGAGGCGA 0.2%
7545 2500 UCaUCAGUCCGAAAGAGGC 0.2% 7594 2505 aUCAGUCCGAAAGAGGCGA 0.2%
7546 2500 UCGcCAGUCCCGAAGAGGC 0.2% 7595 2505 GcCAGUCCGAAAGAGGCGA 0.2%
7547 2500 UCGUCAaUCCGAAAGAGGC 1.0% 7596 2505 GUCAaUCCGAAAGAGGCGA 1.0%
7548 2500 UCGUCAGUCaGAAAGAGGC 0.1% 7597 2505 GUCAGUCaGAAAGAGGCGA 0.1%
7549 2500 UCGUCuGUCCGAAAGAGGC 0.1% 7598 2505 GUCUGUCCGAAAGAGGCGA 0.1%
7550 2500 UCGUCAaUCCGAgAGAGGC 1.7% 7599 2505 GUCAaUCCGAgAGAGGCGA 1.7%
7551 2500 UCGUCAGUCCGAgACAGGa 0.3% 7600 2505 GUCAGUCCGAgAGAGGaGA 0.3%
2501 2501 UUGUGCGACAAUGCUUCAA 92.4% 2506 2506 UCAGUCCGAAAGAGGCGAA 92.4%
7552 2501 UUGUGCGACAAUGCUUuAA 0.5% 7601 2506 UCAGUCCGAAAGAGGCGAg 0.2%
7553 2501 UUGUGCGACAAUGuUUCAA 2.8% 7602 2506 UCAGUCCGAgAGAGGCGAA 3.7%
7554 2501 UUGUGCGACAgUGCUUCAA 1.2% 7603 2506 UCAGUCUGAAAGAGGCGAA 0.2%
7555 2501 UUGUGCGgCAAUGCUUCAA 0.2% 7604 2506 cCAGUCCGAAAGAGGCGAA 0.2%
7556 2501 gUGUGCGACAAUGCUUCAA 0.1% 7605 2506 UCAaUCCGAAAGAGGCGAA 1.0%
7557 2501 UcGUGCGACAAUGCUUCAA 0.1% 7606 2506 UCAGUCaGAAAGAGGCGAA 0.1%
7558 2501 UUGUGaGACAAUGCUUCAA 0.2% 7607 2506 UCuGUCCGAAAGAGGCGAA 0.1%
7559 2501 UUGUGCGACAAUGCUUCuA 0.1% 7608 2506 UCAaUCCGAgAGAGGCGAA 1.7%
7560 2501 UUGUGgGACAAUGCUUCAA 0.1% 7609 2506 UCAGUCCGAgAGAGGaGAA 0.3%
7561 2501 UUGUaCGACAAUGCUUuAA 1.6% 2507 2507 GGUAAACUUUGUGAGCAUG 92.4%
2502 2502 UAAGCGAUUUGAAGCAAUA 92.4% 7610 2507 GGUAAAuUUUGUGAGCAUG 3.0%
7562 2502 UAAGCGAUUUGAAGCAgUA 0.4% 7611 2507 GGUAAAuUUUGUGAGuAUG 1.7%
7563 2502 UAAGuGAUUUGAAGCAAUA 0.3% 7612 2507 GGUgAACUUUGUGAGuAUG 2.2%
7564 2502 UAgGCGAUUUGAAGCAAUA 0.3% 7613 2507 GGUAAACUUUaUGAGCAUG 0.1%
7565 2502 UgAGCGAUUUGAAGCAAUA 0.1% 7614 2507 uGUAAACUUUGUGAGCAUG 0.1%
7566 2502 UAgGuGAUUUGAAGCAAUA 0.3% 7615 2507 aGUAAAuUUUGUGAGCAUG 0.2%
7567 2502 cAAGCGAUUUGAAGCAAUA 0.2% 7616 2507 GGUAAAuUUUGUaAGuAUG 0.2%
7568 2502 UAAGCGAcUUGAAGCAAUA 0.2% 2508 2508 UCCGAAAGAGGCGAAGAAA 92.4%
7569 2502 UAAGCGAUcUGAAGCAAUA 0.3% 7617 2508 UCCGAAAGAGGCGAAGAgA 1.2%
7570 2502 UUAGCUGUUUaAAGCUAUA 0.3% 7618 2508 UCCGAAAGAGGCGAgGAAA 0.2%
7571 2502 UAAGCGAUUUGAAaCAAUA 0.2% 7619 2508 UCCGAgAGAGGCgAAGAAA 1.3%
7572 2502 UuAGCGAUUUGAAGCAAUA 0.2% 7620 2508 UCuGAAAGAGGCGAAGAAA 0.2%
7573 2502 UAgGCGAcUUGAAGCAAUA 0.3% 7621 2508 UCCGAgAGAGGCGAAGAgA 4.2%
7574 2502 UcAGCGAUUUaAAGCAAUA 0.1% 7622 2508 UCaGAAAGAGGCGAAGAAA 0.1%
2503 2503 UUCGUCAGUCCGAAAGAGG 92.4% 7623 2508 UCCGAAAGAGGCGAAaAAA 0.1%
7575 2503 UUCGUCAGUCCGAgAGAGG 4.1% 7624 2508 UCCGAgAGAGGaGAAGAgA 0.3%
7576 2503 UUCGUCAGUCUGAAAGAGG 0.2% 2509 2509 CCGAAAGAGGCGAAGAAAC 92.4%
7577 2503 UUCaUCAGUCCGAAAGAGG 0.2% 76Z5 2509 CCGAAUGAGGCGAAGAgAC 1.2%
7578 2503 UUCGcCAGUCCGAAAGAGG 0.2% 7626 2509 CCGAAAGAGGCGAgGAAAC 0.2%
7579 2503 UUCGUCAaUCCGAAAGAGG 1.0% 7627 2509 CCGAgAGAGGCGAAGAAAC 1.3%
7580 2503 UUCGUCAGUCaGAAAGAGG 0.1% 7628 2509 CuGAAAGAGGCGAAGAAAC 0.2%
7581 2503 UUCGUCuGUCCGAAAGAGG 0.1% 7629 2509 CCGAgAGAGGCGAAGAgAC 4.2%
7582 2503 UUCGUCAaUCCGAgAGAGG 1.7% 7630 2509 CaGAAAGAGGCGAAGAAAC 0.1%
2504 2504 CGUCAGUCCGAAAGAGGCG 92.4% 7631 2509 CCGAAAGAGGCGAAaAAAC 0.1%
7583 2504 CGUCAGUCCGAgAGAGGCG 3.7% 7632 2509 CCGAgAGAGGaGAAGAgAC 0.3%
7584 2504 CGUCAGUCuGAAAGAGGCG 0.2% 2510 2510 UUUCGUCAGUCCGAAAGAG 92.4%
7585 2504 CaUCAGUCCGAAAGAGGCG 0.2% 7633 2510 UUUCGUCAGUCCGAgAGAG 4.1%
7634 2510 UUUCGUCAGUCuCAAAGAG 0.2% 7683 2515 AAGCGAUcUGAAGCAAUAU 0.3%
7635 2510 UUUCaUCAGUCCGAAAGAG 0.2% 7684 2515 AAGCGAUUUaAAGCAAUAU 0.3%
7636 2510 UUUCGcCAGUCCGAAAGAG 0.2% 7685 2515 AAGCGAUUGAAaCAAUAAU 0.2%
7637 2510 UUUCGUCAaUCCGAAAGAG 1.0% 7686 2515 AAGCGAUUUGAAGCAAUAc 0.5%
7638 2510 UUUCGUCAGUCaGAAAGAG 0.1% 7687 2515 uAGCGAUUUGAAGCAAUAU 0.2%
7639 2510 UUUCGUCuGUCCGAAAGAG 0.1% 7688 2515 AgGCGAcUUAAGCAAUAAU 0.3%
7640 2510 UUUCGUCAaUCCGAgAGAG 1.7% 7689 2515 cAGCGAUUUaAAGCAAUAU 0.1%
2511 2511 UCCUUUCGUCAGUCCGAAA 92.3% 2516 2516 AAGAUUUGUGCGACAAAUG 92.0%
7641 2511 UCCUUUCGUCAGUCCGAgA 4.1% 7690 2516 AAGAUUUUGUGCGACAgUG 0.9%
7643 2511 UCCUUUCGUCAGUCuGAAA 0.2% 7691 2516 AAGAUUUUGUGCGgCAAUG 0.2%
7643 2511 UCuUUUCGUCAGUCCGAAA 0.1% 7692 2516 AgGAUUUUGUGCGACAAUG 0.2%
7644 2511 UCCUUUCaUCAGUCCGAAA 0.2A% 7693 2516 AAGAaUUUGUGCGACAAUG 0.3%
7645 2511 UCCUUUCGcCAGUCCGAAA 0.2% 7694 2516 AAGAcUUUGUGCGAUAAUG 3.1%
7646 2511 UCCUUUCGUCAaUCCGAAA 1.0% 7695 2516 AAGAUUUcGUGCGACAAUG 0.1%
7647 2511 UCCUUUCGUCAGUCaGAAA 0.1% 7696 2516 AAGAUUUUGUaCGACAAUG 1.6%
7648 2511 UCCUUUCGUCuGUCCGAAA 0.1% 7697 2516 AAGAUUUUGUGaGACAAUG 0.1%
7649 2511 UCCUUUCGUCAaUCCGAgA 1.7% 7698 2516 AAGAUUUUGUGgGACAAUG 0.1%
2512 2512 CCUUUCGUCAGUCCGAAAG 92.3% 7699 2516 AAGAcUUUGUGCGACAgUG 0.3%
7650 2512 CCUUUCGUCAGUCCGAgAG 4.1% 7700 2516 AAGAcUgUGUGCGACAAUG 0.1%
7651 2512 CCUUUCGUCAGUCuGAAAG 0.2% 7701 2516 AAGAUUUUGaGgGACAAUG 0.1%
7652 2512 CUUUUCGUCAGUCCGAAAG 0.1% 2517 2517 AGCGAUUUGAAGCAAUAUG 92.0%
7653 2512 CCUUUCaUCAGUCCCAAAG 0.2% 7702 2517 AGCGAUUUGAAGCAgUAUG 0.4%
7654 2512 CCUUUCGcCAGUCCGAAAG 0.2% 7703 2517 AGuGAUUUGAAGCAAUAUG 0.3%
7655 2512 CCUUUCGUCAaUCCGAAAG 1.0% 7704 2517 gGCGAUUUGAAGCAAUAUG 0.3%
7656 2512 CCUUUCGUCAGUCaGAAAG 0.1% 7705 2517 gGuGAUUUGAAGCAAUAUG 0.3%
7657 2512 CCUUUCGUCuGUCCGAAAG 0.1% 7706 2517 AGCGAcUUGAAGCAAUAUG 0.1%
7658 2512 CCUUUCGUCAaUCCGAgAG 1.7% 7707 2517 AGCGAUcUGAAGCAAUAUG 0.3%
2513 2513 GCGAUUUGAAGCAAUAUGA 92.3% 7708 2517 AGCGAUUUaAAGCAAUAUG 0.4%
7659 2513 GCGAUUUGAAGCAgUAUGA 0.4% 7709 2517 AGCGAUUUGAAaCAAUAUG 0.2%
7660 2513 GuGAUUUGAAGCAAUAUGA 0.6% 7710 2517 AGCGAUUUGAAGCAAUAcG 0.5%
7661 2513 GCGAcUUGAAGCAAUAUGA 0.4% 7711 2517 AGCAUUUGAUAGCAAUAUa 0.4%
7662 2513 GCGAUcUGAAGCAAUAUGA 0.3% 7712 2517 gGCGAcUUGAAGCAAUAUG 0.3%
7663 2513 GCGAUUUaAAGCAAUAUGA 0.4% 7713 2517 AGCGAcUUGAAGCAAUAUu 0.1%
7664 2513 GCGAUUUGAAaCAAUAUGA 0.2% 2518 2518 GUCGAAAGAGGCGUAAGAA 91.8%
7665 2513 GCGAUUUGAAGCAAUAcGA 0.5% 7714 2518 GUCCGAAAGAGGCGAAGAg 0.9%
7666 2513 GCGAUUUGAAGCAAUAUaA 0.4% 7715 2518 GUCCGAAAGAGGCGAgGAA 0.2%
7667 2513 GCGAcUUGAAGCAAUAUuA 0.1% 7716 2518 GUCCGAgAGAGGCGAAGAA 1.3%
2514 2514 CUUUCGUCAGUCCGAAAGA 92.3% 7717 2518 GUCuGAAAGAGGCGAAGAA 0.2%
7668 2514 CUUUCGUCAGUCCGAgAGA 4.1% 7718 2518 GUCCGAgAGAGGCGAAGAg 2.5%
7669 2514 CUUUCGUCAGUCuGAAAGA 0.2% 7719 2518 aUCCGAAAGAGGCGAAGAA 0.6%
7670 25l4 uUUACGUCAGUCCGAAAGA 0.1% 7720 2518 GUCaGAAAGAGGCGAAGAA 0.1%
7671 2514 CUUUCaUCAGUCCGAAAGA 0.2% 7721 2518 GUCCGAAAGAGGCGAAaAA 0.1%
7673 2514 CUUUCGcCAGUCCGAAAGA 0.2% 7722 2518 aUCCGAAAGAGGCGAAGAg 0.3%
7673 2514 CUUUCGUCAaUCCGAAAGA 1.0% 7723 2518 aUCCGAgAGAGGCGAAGAg 1.7%
7674 2514 CUUUCGUCAGUCaGAAAGA 0.1% 7724 2518 GUCCGAgAGAGGaGAAGAg 0.3%
7675 2514 CUUUCGUCuGUCCGAAAGA 0.1% 2519 2519 GGCAAGCUUUCUCAAAUGU 91.5%
7676 2514 CUUUCGUCAaUCCGAgAGA 1.7% 7725 2519 GGCAAGCUUUCUCAgAUGU 0.1%
2515 2515 AAGCGAUUUGAAGCAAUAU 92.1% 7726 2519 GGuAAGCcUUCUCAAAUGU 0.1%
7677 2515 AAGCGAUUUGAAGCAgUAU 0.4% 7727 2519 GGCAAaCUUCUCAAAUUGU 0.2%
7678 2515 AAGuGAUUUGAAGCAAUAU 0.3% 7728 2519 GGCAAGCUgUCUCAAAUGU 0.3%
7679 2515 AgGCGAUUUGAAGCAAUAU 0.3% 7729 2519 GGCAAGCUUUCaCAAAUAU 7.7%
7689 2515 gAGCGAUUUGAAGCAAUAU 0.1% 7730 2519 GGuAAGCUUUCaCAAAUGU 0.1%
7681 2515 AgGuGAUUUGAAGCAAUAU 0.3% 2520 252O ACAUUCUUUGGAUGGAAAG 91.3%
7682 2515 AAGCGAcUUGAAGCAAUAU 0.2% 7731 2520 ACAUUCUUUGGAUGGAAgG 1.1%
7732 2520 ACAUUCUUUGGgUGGAAAG 0.1% 7781 2525 AUUUaAAGCAAUAUGAUAG 0.4%
7733 2520 ACAUUuUUUGGAUGGAAAG 2.3% 7782 2525 AUUUGAAaCAAUAUGAUAG 0.2%
7734 2520 ACgUUCUUUGGAUGGAAAG 0.6% 7783 25Z5 AUUUGAAGCAAUAcGAUAG 0.5%
7735 2520 ACAUUCUUUGGgUGGAAgG 0.1% 7784 2525 AUUUGAAGCAAUAUaAUAG 0.4%
7736 2520 ACAUUCUUcGGAUGGAAAG 0.1% 7785 2525 AUUUAAAGCAAUAUGAcAG 1.8%
7737 2520 ACAAUUCUUGGAUGGAAga 0.2% 7786 2525 AcUUGAAUCAAUAUuAUAG 0.1%
7738 2530 ACAUUCUUUGGcUGGAgAG 2.0% 2526 2526 AUUGAGGGCAAGCUUUCUC 91.2%
7739 2530 ACAUUuUUcGGAUGGAAAG 0.1% 7787 2526 AUUGAGGGuAAGCUUUCUC 0.1%
7740 2520 ACAUUCUUcGGcUGGAgAG 0.2% 7788 2526 AUaGAGGGCAAGCUUUCUC 0.1%
7741 2520 ACAUUuUUcGGcUGGAAAG 1.6% 7789 2526 AUUGAaGGCAAGCUUUCUC 0.3%
7742 2520 ACAUUuUUcGGuUGGAAAG 0.1% 7790 2526 AUUGAGGGCAAaCUUUCUC 0.2%
2521 2521 CAUUCUUUGGAUGGAAAGA 91.3% 7791 2526 AUUGAGGGCAAGCUgUCUC 0.3%
7743 2521 CAUUCUUUGGAUGGAAgGA 1.1% 7792 2526 AUUGAGGGCAAGCUUUCaC 7.7%
7744 2521 CAUUCUUUGGgUGGAAAGA 0.1% 7793 2526 AUUGAGGGuAAGCUUUCaC 0.1%
7745 2521 CAUUuUUUGGAUGGAAAGA 2.3% 2527 2527 GAGGGCAAGCUUUCUCAAA 91.2%
774G 2521 CGUUCUUUGGAUGGAAAGA 0.6% 7794 2527 GAGGGCAAGCUUUCUCAgA 0.1%
7747 2521 CAUUCUUUGGgUGGAAgGA 0.1% 7795 2527 GAGGGuAAGCUUUCUCAAA 0.1%
7748 2521 CAUUCUUcGGAUGGAAAGA 0.1% 7796 2527 GAaGGCAAGCUUUCUCAAA 0.3%
7749 2521 CAUUCUUUGGAUGGAAgaA 0.2% 7797 2527 GAGGGCAAaCUUUCUCAAA 0.2%
7750 2521 CAUUCUUUGGcUGGAgAGA 2.0% 7798 2527 GAGGGCAAGCUgUCUCAAA 0.3%
7751 2521 CAUUuUUcGGAUGGAAAGA 0.1% 7799 2527 GAGGGCAAGCUUUCaCAAA 7.7%
7752 2521 CAUUCUUcGGcUGGAgAGA 0.2% 7800 2527 GAGGGuAAGCUUUCaCAAA 0.1%
7753 2521 CAUUuUUcGGcUGGAAAGA 1.6% 2528 2528 GGGCAAGCUUUCUCAAAUG 91.2%
7754 2521 CAUUuUUcGGuUGGAAAGA 0.1% 7801 2528 GGGCAAGCUUUCUCAgAUG 0.1%
2523 2522 GAUUUGAAGCAAUAUGAUA 91.2% 7802 2528 GGGuAAGCUUUCUCAAAUG 0.1%
7755 2522 GAUUUGAAGCAgUAUGAUA 0.4% 7803 2528 aGGCAAGCUUUCUCAAAUG 0.3%
7756 2522 GAcUUGAAGCAAUAUGAUA 0.4% 7804 2528 GGGCAAaCUUUCUCAAAUG 0.2%
7757 2522 GAUcUGAAGCAAUAUGAUA 0.3% 7805 2528 GGGCAAGCUgUCUCAAAUG 0.3%
7758 2522 GAUUUaAAGCAAUAUGAUA 0.4% 7806 2528 GGGCAAGCUUUCaCAAAUG 7.7%
7759 2522 GAUUUGAAaCAAUAUGAUA 0.2% 7807 2528 GGGuAAGCUUUCaCAAAUG 0.1%
776O 2522 GAUUUGAAGCAAUAcGAUA 0.5% 2529 2529 CAUUGAGGGCAAGCUUUCU 91.2%
7761 2522 GAUUUGAAGCAAUAUaAUA 0.4% 7808 2529 CAUUGAGGGuAAGCUUUCU 0.1%
7762 2522 GAUUUGAAGCAAUAUGAcA 1.8% 7809 2529 CAUaGAGGGCAAGCUUUCU 0.1%
7763 2532 GAcUUGAAGCAAUAUuAUA 0.1% 7810 2529 CAUUGAaGGCAAGCUUUCU 0.3%
2523 2533 AGGGCAAGCUUUCUCAAAU 91.2% 7811 2529 CAUUGAGGGCAAaCUUUCU 0.2%
7764 2523 AGGGCAAGCUUUCUCAgAU 0.1% 7812 2529 CAUUGAGGGCAAGCUgUCU 0.3%
7765 2523 AGGGuAAGCUUUCUCAAAU 0.1% 7813 2529 CAUUGAGGGCAAGCUUUCa 7.7%
7766 2523 AaGGCAAGCUUUCUCAAAU 0.3% 7814 2529 CAUUGAGGGuAAGCUUUCa 0.1.%
7767 2523 AGGGCAAaCUUUCUCAAAU 0.2% 2530 2530 GGAAGCUUUCUCAAAUGUC 91.0%
7768 2523 AGGGCAAGCUgUCUCAAAU 0.3% 7815 2530 GCAAGCUUUCUCAAAUGUu 0.1%
7769 2533 AGGGCAAGCUUUCaCAAAU 7.7% 7816 2530 GCAAGCUUUCUCAgAUGUC 0.1%
7770 2523 AGGGuAAGCUUCaCAAAAU 0.1% 7817 2530 GuAAGCUUUCUCAAAUGUC 0.1%
2524 2534 UUGAGGGCAAGCUUUCUCA 91.2% 7818 2530 GCAAaCUUUCUCAAAUGUC 0.2%
7771 2534 UUGAGGGuAAGCUUUCUCA 0.1% 7819 2530 GCAAGCUgUCUCAAAUGUC 0.3%
7772 2524 UaGAGGGCAAGCUUUCUAA 0.1% 7820 2530 GCAAGCUUUCaCAAAUGUC 7.7%
7773 2524 UUGAaGGCAAGCUUUCUCA 0.3% 7821 2530 GCAAGCUUUCUCAAAUGUa 0.3%
7774 2524 UUGAGGGCAAaCUUUCUCA 0.2% 7822 2530 GUAAGCUUUCaCAAAUGUC 0.1%
7775 2524 UUGAGGGCAAGCUgUCUCA 0.3% 2531 2531 UGAGGGCAAGCUUUCUCAA 91.0%
7776 2534 UUGAGGGCAAGCUUUCaCA 7.7% 7823 2531 UGAGGCAAGCUUUUCUCAg 0.1%
7777 2534 UUGAGGGuAAGCUUUCaCA 0.1% 7824 2531 UGAGGGuAAGCUUUCUCAA 0.1%
2525 2535 AUUUGAAGCAAUAUGAUAG 91.2% 7825 2531 aGAGGGCAAGCUUUCUCAA 0.1%
7778 2525 AUUUGAAGCAgUAUGAUAG 0.4% 7826 2531 UGAaGGCAAGCUUUCUCAA 0.3%
7779 2525 AcUUGAAGCAAUAUCAUAG 0.4% 7827 2531 UGAGGGCAAaCUUUCUCAA 0.2%
7780 2525 AUcUGAAGCAAUAUGAUAG 0.3% 7828 2531 UGAGGGCAAGCUgUCUCAA 0.3%
7829 2531 UGAGGGCAAGCUUUCaCAA 7.7% 7878 2536 CGAUcUGAAGCAAUAUGAU 0.3%
7830 2531 UGAGGGuAAGCUUUCaCAA 0.1% 7879 2536 CGAUUUaAAGCAAUAUGAU 0.4%
2532 2532 CAGAAUGAGUUCAACAAGG 91.0% 7880 2536 CGAUUUGAAaCAAUAUGAU 0.2%
7831 2532 CAGAAUGAGUUCAAuAAGG 0.2% 7881 2536 CGAUUUGAAGCAAUAcGAU 0.5%
7832 2532 CAGAAUGAGUUuAACAAGG 0.3% 7882 2536 CGAUUUGAAGCAAUAUaAU 0.4%
7833 2532 CAGAgUGAGUUCAACAAGG 1.5% 7883 2536 CGAUUUGAAGCAAUAUGAc 1.8%
7834 2532 CAaAAUGAGUUCAACAAGG 0.2% 7884 2536 CGAcUUGAAGCAAUAUuAU 0.1%
7835 2532 CAGAAUGAaUUCAACAAGG 3.3% 2537 2537 UCUUUGGAUGGAAAGAACC 90.5%
7836 2532 CAGAAUGAGUUCAACAAaG 1.2% 7885 2537 UCUUUGGAUGGAAAGAgCC 1.4%
7837 2532 CAGAuUGAGUUCAACAAGG 0.1% 7886 2537 UCUUUGGAUGGAAgGAACC 1.1%
7838 2532 CAGAAUGgaUUCAACAAGG 0.1% 7887 2537 UCUUUGGgUGGAAGAAACC 0.1%
7839 2532 CAGAgUGAaUUCAACAAGG 2.0% 7888 2537 UuUUUGGAUGGAAAGAACC 2.3%
2533 2533 AGAAUGAGUUCAACAAGGC 91.0% 7889 2537 UCUUUGGgUGGAAgGAACC 0.1%
7840 2533 AGAAUGAGUUCAAuAAGGC 0.2% 7890 2537 UCUUcGGAUGGAAAGAACC 0.2%
7841 2533 AGAAUGAGUUuAACAAGGC 0.3% 7891 2537 UCUUUGGAUGGAAgAAACC 0.2%
7842 2533 AGAgUGAGUUCAACAAGGC 1.5% 7892 2537 UCUUUGGcUGGAgAGAgCC 2.0%
7843 2533 AaAAUGAGUUCAACAAGGC 0.2% 7893 2537 UuUUcGGAUGGAAAGAgCC 0.1%
7844 2533 AGAAUGAaUUCAACAAGGC 3.3% 7894 2537 UuUUcGGcUGGAAAGAACC 0.7%
7845 2533 ACAAUGAGUUCAACAAaGC 1.2% 2538 2538 AGCCUAUGUGGAUGGAUUC 90.4%
7846 2533 AGAuUGAGUUCAACAAGGC 0.1% 7895 2538 AGCCUAUGUGGAUGGAUUu 7.9%
7847 2533 AGAAUGgaUUCAACAAGGC 0.1% 7896 2538 AGCCUAUGUGGAUGGgUUC 0.6%
7848 2533 AGAgUGAaUUCAACAAGGC 2.0% 7897 2538 AaCCUAUGUGGAUGGAUUC 0.5%
2534 2534 AUAAGCGAUUUGAAGCGAAU 90.7% 7898 2538 AGCCUAUGUaGAUGGAUUC 0.2%
7849 2534 AUAAGCGAUUUGAAGCAgU 0.4% 7899 2538 AGCCUAUGUGGAUaGAUUC 0.1%
7850 2534 AUAAGuGAUUUGAAGCAAU 0.3% 7900 2538 AGCCUAUGUGGAUGGAUaC 0.1%
7851 2534 AUAgGCGAUUUGAAGCAAU 0.2% 7901 2538 AaCCUAUGUGGAUGGAUUu 0.1%
7852 2534 AUgAGCGAUUUGAAGCAAU 0.1% 2539 2539 CAAUGAAAGAGUAUGGAGA 90.4%
7853 2534 gUAAGCGAUUUGAAGCAAU 1.7% 7902 2539 CAAUGAAAGAGUAUGGgGA 4.1%
7854 2534 gUAgGCGAUUUGAAGCAAU 0.1% 7903 2539 CgAUGAAAA3AGAUGGAGA 0.%
7855 2534 gUAgGuGAUUUGAAGCAAU 0.3% 7904 2539 GAAUGAAgGAGUAUGGgGA 0.3%
7856 2534 AcAAGCGAUUUGAAGCAAU 0.2% 7905 2539 CAAUGAAAGAaUAUGGAGA 2.1%
7857 2534 AUAAGCGAcUUGAAGCAAU 0.1% 7906 2539 CAAUGAAAGAGUAcGGAGA 0.1%
7858 2534 AUAAGCGAUUUaAAGCAAU 0.3% 7907 2539 CAAUGAAAGAGUuUGGAGA 0.1%
7859 2534 AUAAGCGAUUUGAAaCAAU 0.2% 7908 2539 CAAUGAAAGAaUAUGGgGA 1.6%
7860 2534 AUuAGCGAUUUGAAGCAAU 0.2% 7909 2539 CAAUGAAgGAaUAUGGgGA 0.3%
7861 2534 AUAgGCGAcUUGAAGCAAU 0.3% 7910 2539 CAAUGAAgGAGUAcGGgGA 0.6%
7862 2534 gUAAGCGAcUUGAAGCAAU 0.1% 7911 2539 CAAUGAAAGAacAUGGAGA 0.1%
7863 2534 gUAAGCGAUcUGAAGCAAU 0.3% 2540 2540 GGAAGCAAUAUGAUAGUGA 90.2%
7864 2534 AUcAGCGAUUUaAAGCAAU 0.1% 7912 2540 UGAAGCAgUAUGAUAGUGA 0.4%
2535 2535 UUCUUUGGAUGGAAAGAAC 90.5% 7913 2540 UaAAGCAAUAUGAUAGUGA 0.4%
7865 2535 UUCUUUGGAUGGAAAGAgC 1.4% 7914 2540 UGAAaCAAUAUGAUAGUGA 0.2%
7866 2535 UUCUUUGGAUGGAAgGAAC 1.1% 7915 2540 UGAAGCAAUAcGAUAGUGA 0.5%
7867 2535 UUCUUUGGgUGGAAAGAAC 0.1% 7916 2540 UGAAGCAAUAUaAUAGUGA 0.4%
7868 2535 UUuUUUGGAUGGAAAGAAC 2.3% 7917 2540 UGAAGCAAUAUGAcAGUGA 1.6%
7869 2535 UCUUUGGgUGGAAgGAAAC 0.1% 7918 2540 UGAAGCAAUAUGAUAGcGA 1.6%
7870 2535 UUCUUcGGAUGGAAAGAAC 0.1% 7919 2540 UGAAGCAAUAUGAUAGUaA 0.1%
7871 2535 UUOUUUGGAUGGAAgaAAC 0.2% 7920 2540 UGAAGCAAUAUuAUAGUGA 0.1%
7872 2535 UUCUUUGGcUGGAgAGAgC 2.0% 7921 2540 UGAAGCAAUAUGAcAGcGA 0.2%
7874 2535 UUuUUcGGAUGGAAAGAgC 0.1% 2541 2541 UGGAAGAUUUUGUGCGACA 90.1%
7874 2535 UUuUUcGGcUGGAAAGAAC 0.7% 7922 2541 UGGAAGAUUUUGUGCGgCA 0.2%
2535 2536 CGAUUUGAAGCAAUAUGAU 90.5% 7923 2541 UGGAgGAUUUUGUGCGACA 0.2%
7875 2536 CGAUUUGAAGCAgUAUGAU 0.4% 7924 2541 UGGAAGAaUUUGUGCGACA 0.3%
7876 2536 uGAUUUGAAGCAAUAUGAU 0.6% 7925 2541 UGGAAGAcUUUGUGCGACA 3.4%
7877 2536 CGAcUUGAAGCAAUAUGAU 0.4% 7926 2541 UGGAAGAUUUcGUGCGACA 0.1%
7927 2541 UGGAAGAUUUUGUaCGACA 1.6% 7951 2543 AAAGAGUUcUUUGAGAAcA 0.3%
7928 2541 UGGAAGAUUUUGUGaGACA 0.1% 7952 2543 AAAGAGUUUUUcaAGAAUA 0.2%
7929 2541 UGGAAGAUUUUGUGgGACA 0.1% 2544 2544 UAAUGAAGGGGGUAUAGAU 90.0%
7930 2541 UGGAAGAcUgUGUGCGACA 0.1% 7953 2544 UAAUGAAGGGGGUAUACgU 0.7%
7931 2541 UGGAAGAUUUUGaGgGACA 0.1% 7954 2544 UAAUGAAGGGGGUgUACAU 00.6%
2542 2542 AUGGAAGAUUUUGUGCGAC 90.1% 7955 2544 UAgUGAAGGGGGUAUACAU 0.1%
7932 2542 AUGGAAGAUUUUGUGCGgC 0.2% 7956 2544 UAAUGAAaGGGGUAUACAU 0.2%
7933 2542 AUGGAgGAUUUGUGGCGAC 0.2% 7957 2544 UAAUGAAGGGaGUAUACAU 3.8%
7934 2542 AUGGAAGAaUUUGUGCGAC 0.3% 7958 2544 UAAUGAAGGGGaUAUACAU 0.1%
7935 2542 AUGGAAGAcUUUGUGCGAC 3.4% 7959 2544 UAAUGAAGGGGGUuUACAU 2.2%
7936 2542 AUGGAAGAUUUcGUGCGAC 0.1% 7960 2544 UAAUGAAGGGaGUgUACAU 2.0%
7937 2542 AUGGAAGAUUUUGUaCGAC 1.6% 7961 2544 UAAUGAAGGGaaUAUACAU 0.1%
7938 2542 AUGGAAGAUUUUGUGaGAC 0.1% 2545 2545 GAAGAAUUUUGUGCACAAU 90.0%
7939 2542 AUGGAAGAUUUUGUGgGAC 0.1% 7962 2545 GAAGAUUUUGUGCGACAgU 0.9%
7940 2542 AUGGAAGAcUgUGUGCGAC 0.1% 7963 2545 GAAGAUUUUGUGCGgCAAU 0.2%
7941 2542 AUGGAAGAUUUUGaGgGAC 0.1% 7964 2545 GAgGAUUUUGUGCGACAAU 0.2%
2543 2543 AAAGAGUUUUUUGAGAAUA 90.1% 7965 2545 GAAGAaUUUGUGCGACAAU 0.3%
7942 2543 AAAGAGUUUUUUGAGAgUA 0.4% 7966 2545 GAAGAcUUUGUGCGACAAU 3.1%
7943 2543 AAAGAGUUUUUUGAGgAUA 0.2% 7967 2545 GAAGAUUUcGUGCGACAAU 0.1%
7944 2543 AAgGAGUUUUUUGAGAAUA 0.1% 7968 2545 GAAGAUUUUGUaCGACAAU 1.6%
7945 2543 AAAGAaUUUUUUGAGAAUA 0.3% 7969 2545 GAAGAUUUUGUGaGACAAU 0.1%
7946 2543 AAAGAGUUUUUcGAGAAUA 1.5% 7970 2545 GAAGAUUUGUUGgGACAAU 0.1%
7947 2543 AAAGAGUUUUUUGAaAAUA 0.5% 7971 2545 GAAGAcUUUGUGCGACAgU 0.3%
7948 2543 AAAGAGUUUUUUGAGAAcA 1.6% 7972 2545 GAAGAcUgUGUGCGACAAU 0.1%
7949 2543 AAAGAuUUUUUUGAGAAUA 0.2% 7973 2545 GAAGAUUUUGaGgGACAAU 0.1%
7950 2543 AAAGnGUUUUUUGAGAAUA 0.1%
表20-4.从表1-5所列甲型流感片段5(NP)序列得到的保守和小变体19-mer序列。保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化。
SeQ ID RefID 匹配序列 %总数 7988 3549 UUAUUUCUUCGGgGAuAAU 0.1%
3546 3546 UCUUAUUUCUUCGGAGACA 98.0% 3550 3550 CUUAUUUCUUCGGAGACAA 97.9%
7974 3546 UCUUAUUUCUUCGGgGACA 1.6% 7989 3550 CUUAUUUCUUCGGAGACAg 0.1%
7975 3546 UCUUAUUUCUUuGGAGACA 0.2% 7990 3550 CUUAUUUCUUCGGgGACAA 1.6%
7976 3546 UCUUAUUUCUUCGGgGAuA 0.1% 7991 3550 CUUAUUUCUUuGGAGACAA 0.2%
3547 3547 AUUUCUUCGGAGACAAUGC 97.9% 7992 3550 CUUAUUUCUUCGGgGAuAA 0.1%
7977 3547 AUUUCUUCGGAGACAgUGC 0.1% 3551 3551 UUUCUUCGGAGACAAUGCA 97.8%
7978 3547 AUUUCUUCGGgGACAAUGC 1.6% 7993 3551 UUUCUUCGGAGACAgUGCA 0.1%
7979 3547 AUUUCUUuGGAGACAAUGC 0.2% 7994 3551 UUUCUUCGGgGACAAUGCA 1.6%
7980 3547 AUUUCUUCGGgGAuAAUGC 0.1% 7995 3551 UUUCUUuGGAGACAAUGCA 0.2%
3548 3548 UAUUUCUUCGGAGACAAUG 97.9% 7996 3551 UUUCUUCGGgGAuAAUGCA 0.1%
7981 3548 UAUUUCUUCGGAGACAgUG 0.1% 3552 3552 AUGAAGAUCUUAUUUCUUU 97.6%
7982 3548 UAUUUCUUCGGgGACAAUG 1.6% 7997 3552 AUGAAGGgUCUUAUUUCUU 0.7%
7983 3548 UAUUUCUUuGGAGACAAUG 0.2% 7998 3552 AUGAgGGAUCUUAUUUCUU 0.2%
7984 3548 UAUUUCUUUCGGgGAuAUG 0.1% 7999 3552 AUGAgGGgUCUUAUUUCUU 0.2%
3549 3549 UUAUUUCUUCGGAGACAAU 97.9% 8000 3552 AcGAAGGAUCUUAUUUCUU 0.1%
7985 3549 UUAUUUCUUCGGAGACAgU 0.1% 8001 3552 AUGAAGGuUCUUAUUUCUU 1.1%
7986 3549 UUAUUUCUUCGGgGACAAU 16% 3553 3553 AAUUGAAGGAUCUAUUUCU 97.6%
7987 3549 UUAUUUCUUuGGAGACAAU 0.2% 8002 3553 AAUGAAGGgUCUUAYUUCU 0.7%
8003 3553 AAUGAgGGAUCUUAUUUCU 0.2% 8046 3561 GGAUCUUAUUUCUUuGGAG 0.2%
8004 3553 AAUGAgGGgUCUUAUUUCU 0.1% 8047 3561 GGgUCUUAUUUCUUCGGAG 0.9%
8005 3553 AAcGAAGGAUCUUAUUUCU 0.1% 8048 3561 GGuUCUUAUUUCUUCGGAG 1.1%
8006 3553 AAUGAAGGuUCUUAUUUCU 1.1% 3562 3562 AUCUUAUUUCUUCGGAGAC 96.0%
8007 3553 uAUGAgGGgUCUUAUUUCU 0.1% 8049 3562 AUCUUAUUUCUUCGGgGAC 1.6%
3554 3554 GAAGGAUCUUAUUCUUCG 97.5% 8050 3562 AUCUUAUUUCUUuGGAGAC 0.2%
8008 3554 GAAGGAUCUUAUUUCUUuG 0.2% 8051 3562 gUCUUAUUUCUUCGGAGAC 0.9%
8009 3554 GAAGGgUCUUAUUUCUUCG 0.7% 8052 3562 AUCUUAUUUCUUCGGgGAu 0.1%
8010 3554 GAgGGAUCUUAUUUCUUCG 0.2% 8053 3562 uUCUUAUUUCUUCGGAGAC 1.1%
8011 3554 GAgGGgUCUUAUUUCUUCG 0.2% 3563 3563 AGGAUCUUAUUUCUUCGGA 95.8%
8012 3554 GAAGGuUCUUAUUUCUUCG 1.1% 8054 3563 AGGAUCUUAUUUCUUCGGg 1.7%
3555 3555 AAGGAUCUUAUUUCUUCGG 97.5% 8055 3563 AGGAUCUUAUUUCUUuGGA 0.2%
8013 3555 AAGGAUCUUAUUUCUuGG 0.2% 8056 3563 AGGgUCUUAUUUCUUCGGA 0.7%
8014 3555 AAGGgUCUUAUUUCUUCGG 0.7% 8057 3563 gGGAUCUUAUUUCUUCGGA 0.2%
8015 3555 AgGGAUCUUAAUUCUUCGG 0.2% 8058 3563 gGGgUCUUAUUUCUUCGGA 0.2%
8016 3555 AgGGgUCUUAUUUCUUCGG 0.2% 8059 3563 AGGuUCUUAUUUCUUCGGA 1.1%
8017 3555 AAGGuUCUUAUUUCUUCGG 1.1% 3564 3564 AGUAAUGAAGGAUCUUAUU 95.4%
3556 3556 UGAAGGAUCUUAUUUCUUC 97.4% 8060 3564 AGUAAUGAAGGgUCUUAUU 0.7%
8018 3556 UGAAGGAUCUUAUUUCUUu 0.2% 8061 3564 AGUAAUGAgGGAUCUUAUU 0.2%
8019 3556 UGAAGGgUCUUAUUUCUUC 0.7% 8062 3564 AaUAAUGAAGGAUCUUAUU 1.9%
8020 3556 UGAgGGAUCUUAUUUCUUC 0.2% 8063 3564 AGcAAUGAAGGAUCUUAUU 0.3%
8021 3556 UGAgGGgUCUUAUUUCUUC 0.2% 8064 3564 AGUAAcGAAGGAUCUUAUU 0.1%
8022 3556 cGAAAGGAUCUUAUUUCUUC 0.1% 8065 3564 AGUAAUGAAGGuUCUUAUU 1.1%
8023 3556 UGAAGGuUCUUAUUUCUUC 1.1% 8066 3564 AaUAAUGAgGGgUCUUAUU 0.1%
3557 3557 UAAUGAAGGAUCUUAUUUC 97.3% 3565 3565 GUAAUGAAGGAUCUUAUUU 95.4%
8024 3557 UAAUGAAGGgUCUUAUUUC 0.7% 8067 3565 GUAAUGAAGGgUCUUAUUU 0.7%
8025 3557 UAAUGAgGGAUCUUAUUUC 0.2% 8068 3565 GUAAUGAgGGAUCUUAUUU 0.2%
8026 3557 UAAUGAgGGgUCUUAUUUC 0.1% 8069 3565 aUAAUGAAGGAUCUUAUUU 1.9%
8027 3557 cAAUGAAGGAUCUUAUUUC 0.3% 8070 3565 GcAAUGAAGGAUCUUAUUU 0.3%
8028 3557 UAAcGAAGGAUCUUAUUUC 0.1% 8071 3565 GUAAcGAAGGAUCUUAUUU 0.1%
8029 3557 UAAUGAAGGuUCUUAUUUC 1.1% 8072 3565 GUAAUGAAGGuUCUUAUUU 1.1%
8030 3557 UuAUGAgGGgUCUUAUUUC 0.1% 8073 3565 aUAAUGAgGGgUCUUAUUU 0.1%
3558 3558 UUCUUCGGAGACAAUGCAG 96.5% 3566 3566 AUGAGUAAUGAAGGAUCUU 95.3%
8031 3558 UUCUUCGGAGACAgUGCAG 0.1% 8074 3566 AUGAGUAAUGAAGGgUCUU 0.7%
8032 3558 UUCUUCGGgGACAAUGCAG 1.6% 8075 3566 AUGAGUAAUGAgGGAUCUU 0.2%
8033 3558 UUCUUuGGAGACAAUGCAG 0.2% 8076 3566 AUaAGUUAAUGAGGAUCUU 0.2%
8034 3558 UUCUUCGGgGAuAAUGCAG 0.1% 8077 3566 AUGAaUAAUGAAGGAUCUU 1.9%
8035 3558 UUCUUCGGAGACAAUGCAa 0.3% 8078 3566 AUGAGcAAUGAAGGAUCUU 0.3%
3559 3559 UCUUCGGAGACAAUGCAGA 96.4% 8079 3566 AUGAGUAAcGAAGGAUCUU 0.1%
8036 3559 UCUUCGGAGACAgUGCAGA 0.1% 8080 3566 AUGAGUAAUGAAGGuUCUU 1.1%
8037 3559 UCUUCGGgGACAAUGCAGA 1.6% 8081 3566 AUGAaUAAUGAgGGgUCUU 0.1%
8038 3559 UCUUuGGAGACAAUGCAGA 0.2% 3567 3567 UGAGUAAUGAA AUCUUA 95.3%
8039 3559 UCUUCGGgGAuAAUGCAGA 0.1% 8082 3567 UGAGUAAUGAAGGgUCUUA 0.7%
8040 3559 UCUUCGGAGACAAUGCAaA 0.3% 8083 3567 UGAGUAAUGAgGGAUCUUA 0.2%
3560 3560 GAUCUUAUUUCUUCGGAGA 96.0% 8084 3567 UaAGUAAUGAAGGAUCUUA 0.2%
8041 3560 GAUCUUAUUUCUUCGGgGA 1.7% 8085 3567 UGAaUAAUGAAGGAUCUUA 1.9%
8042 3560 GAUCUUAUUUCUUuGGAGA 0.2% 8086 3567 UGAGcAAUGAAGGAUCUUA 0.3%
8043 3560 GgUCUUAUUUCUUCGGAGA 0.9% 8087 3567 UGAGUAAcGAAGGAUCUUA 0.1%
8044 3560 GuUCUUAUUUCUUCGGAGA 1.1% 8088 3567 UGAGUAAUGAAGGuUCUUA 1.1%
3561 3561 GGAUCUUAUUUCUUCGGAG 96.0% 8089 3567 UGAaUAAUGAgGGgUCUUA 0.1%
8045 3561 GGAUCUUAUUUCUUCGGgG 1.7% 3568 3568 GAGUAAUGAAGGAUCUUAU 95.3%
8090 3568 GAGUAAUGAAGGgUCUUAU 0.7% 8137 3572 GUgCAAAUUGCUUCAAAUG 0.1%
8091 3568 GAGUAAUGAgGGAUCUUAU 0.2% 8138 3572 aUACAAAUUGCUUCAAAUG 0.4%
8092 3568 aAGUAAUGAAGGAUCUUAU 0.2% 8139 3572 GUACAAAUUGCcUCAAAUG 0.1%
8093 3568 GAaUAAUGAAGGAUCUUAU 1.9% 8140 3572 GUACAAAUUGCUUCAAAcG 0.1%
8094 3568 GAGcAAUGAAGGAUCUUAU 0.3% 8141 3572 GUuCAAAUUGCUUCAAAUG 2.1%
8095 3568 GAGUAAcGAAGGAUCUUAU 0.1% 8142 3572 GUuCAgAUUGCUUCAAAUG 2.5%
8096 3568 GAGUAAUGAAGGuUCUUAU 1.1% 8143 3572 aUuCAAAUUGCUUCAAAUG 0.2%
8097 3568 GAaUAAUGAgGGgUCUUAU 0.1% 8144 3572 GUuCAAAUaGCUUCAAAUG 0.2%
3569 3569 UACAAAUUGCUUCAAAUGA 93.7% 8145 3572 GUuCAAAUUGCUUCcAAUG 0.5%
8098 3569 UACAgAUUGCUUCAAAUGA 0.1% 8146 3572 aUuCAgAUUGCUUCAAAUG 0.1%
8099 3569 UgCAAAUUGCUUCAAAUGA 0.1% 8147 3572 GUuCAgAUUGCgUCAAAUG 0.3%
8100 3569 UACAAAUUGCcUCAAAUGA 0.1% 8148 3572 GUuCAgAUUGCUUCcAAUG 0.1%
8101 3569 UACAAAUUGCUUCAAAcGA 0.1% 3573 3573 AUGGGUGCUCUCUGCUUUG 93.3%
8102 3569 UuCAAAUUGCUUCAAAUGA 2.3% 8149 3573 AUGGUGCUuUCUGCUUUUG 0.2%
8103 3569 UuCAgAUUGCUUCAAAUGA 2.6% 8150 3573 AUGGUaCUCUCUGCUUUUG 0.8%
8104 3569 UuCAAAUaGCUUCAAAUGA 0.2% 8151 3573 AUGGUGCUaUCUGCUUUUG 0.1%
8105 3569 UuCAAAUUGCUUCcAAUGA 0.5% 8152 3573 AUGGUGCUCUCaGCUUUUG 0.1%
8106 3569 UuCAgAUUGCgUCAAAUGA 0.3% 8153 3573 AUGGUGCUCUCUGCcUUUG 1.1%
8107 3569 UuCAgAUUGCUUCcAAUGA 0.1% 8154 3573 AUGGUGCUCUCUGCgUUUG 0.1%
3570 3570 AAUUUCAAACAGCUGCACA 93.5% 8155 3573 AUGGUGCUCUCUGCUUUcG 0.2%
8108 3570 AAUUUCAAACAGCUGCgCA 0.3% 8156 3573 AUGGUaCUCUCUGCaUUUG 1.7%
8109 3570 AAUUUCAAACgGCUGCACA 04% 8157 3573 AUGGUcCUCUCUGCaUUUG 0.2%
8110 3570 AAUUUCAAgCAGCUGCACA 0.1% 8158 3573 AUGGUuCUCUCUGCaUUUG 1.9%
8111 3570 AAUUUCAgACAGCUGCACA 0.3% 3574 3574 UGGUGCUCUCUGCUUUUGA 93.3%
8112 3570 AAcUUCAAACAGCUGCACA 0.2% 8159 3574 UGGUGCUuUCUGCUUUGGA 0.2%
8113 3570 AAUUcCAAACAGCUGCACA 0.1% 8160 3574 UGGUaCUCUCUGCUUUUGA 0.8%
8114 3570 AAUUUCAAACAGCaGCACA 2.1% 8161 3574 UGGUGCUaUCUGCUUUUGA 0.1%
8115 3570 AAUUUCAAACAGCUGCuCA 0.1% 8162 3574 UGGUGCUCUCaGCUUUUGA 0.1%
8116 3570 AAUUUCAAACuGCUGCACA 0.5% 8163 3574 UGGUGCUCUCUGCcUUUGA 1.1%
8117 3570 AAUUUCAAACgGCaGCACA 0.1% 8164 3574 UGGUGCUCUCUGCgUUUGA 0.1%
8118 3570 AAUUUCAgACAGCUGCcCA 0.3% 8165 3574 UGGUGCUCUCUGCUUUcGA 0.2%
8119 3570 AgUUUCAgACAGCUGCcCA 0.1% 8166 3574 UGGUaCUCUCUGCaUUUGA 1.7%
8120 3570 AAUUcCAAACAGCaGCACA 1.9% 8167 3574 UGGUcCUCUCUGCaUUUGA 0.2%
8121 3570 AAUUUCAgACcGCaGCACA 0.1% 8168 3574 UGGUuCUCUCUGCaUUUGA 1.9%
3571 3571 AAAUUUCAAACAGCUGCAC 93.5% 3575 3575 CAAGGCACCAAACGGUCUU 93.2%
8122 3571 AAAUUUCAAACAGCUGCgC 0.3% 8169 3575 CAAGGuACCAAACGGUCUU 0.1%
8123 3571 AAAUUUCAAACgGCUGCAC 0.4% 8170 3575 CAgGGCACCAAACGGUCUU 0.8%
8124 3571 AAAUUUCAAgCAGCUGCAC 0.1% 8171 3575 CAAGGCAaCAAACGGUCUU 0.1%
8125 3571 AAAUUUCAgACAGCUGCAC 0.3% 8172 3575 CAAGGCACCAAACGaUCUU 4.7%
8126 3571 AAAcUUCAAACAGCUGCAC 0.2% 8173 3575 CAAGGCACCAcACGGUCUU 0.1%
8127 3571 AAAUUcCAAACAGCUGCAC 0.1% 8174 3575 aAAGGCACCAAACGaUCUU 0.1%
8128 3571 AAAUUUCAAACAGCaGCAC 2.1% 8175 3575 CAAGGCACCAAACGaUCaU 0.7%
8129 3571 AAAUUUCAAACAGCUGCuC 0.1% 8176 3575 CAAGGCACCAAACGaUCcU 0.4%
8130 3571 AAAUUUCAAACuGCUGCAC 0.5% 3576 3576 AAGGCACCAAACGGUCUUA 93.2%
8131 3571 AAAUUUCAAACgGCaGCAC 0.1% 8177 3576 AAGGuACCAAACGGUCUUA 0.1%
8132 3571 AAAUUUCAgACAGCUGCcC 0.3% 8178 3576 AgGGCACCAAACGGUCUUA 0.8%
8133 3571 AAgUUUCAgACAGCUGCcC 0.1% 8179 3576 AAGGCAaCAAACGGUCUUA 0.1%
8134 3571 AAAUUcCAAACAGCaGCAC 1.9% 8180 3576 AAGGCACCAAACGaUCUUA 4.7%
8135 3571 AAAUUUCAgACcGCaGCAC 0.1% 8181 3576 AAGGCACCAcACGGUCUUA 0.1%
8572 3572 GUACAAAUUGCUUCAAAUG 93.4% 8182 3576 AAGGCACCAAACGaUCaUA 0.7%
8136 3572 GUACAgAUUGCUUCAAAUG 0.1% 8183 3576 AAGGCACCAAACGaUCcUA 0.4%
3577 3577 AGAGAAUGUGCAACAUUCU 93.0% 8230 3581 GGAACCCAGGgAAUGCUGA 0.6%
8184 3577 AGAGAAUGUGCAAuAUUCU 0.3% 8231 3581 GGAAuCCAGGAAAUGCUGA 1.2%
8185 3577 AGAGgAUGUGCAACAUUCU 0.5% 8232 3581 GaAACCCAGGAAAUGCUGA 0.4%
8186 3577 AaAGAAUGUGCAACAUUCU 1.2% 8233 3581 GGAACCCAaGAAAUGCUGA 0.1%
8187 3577 AGAGAUGUUGCAACAUcCU 4.0% 8234 3581 GGAACCCAGGAAAcGCUGA 0.9%
8188 3577 AuAGAUGUGCCAACAUUCU 0.3% 8235 3581 GGAACCCAGGAAAUaCUGA 0.1%
8189 3577 AaAGAAUGUGCAAuAUUCU 0.4% 8236 3581 GaAACCCAGGgAAUGCUGA 0.4%
8190 3577 AGAGAAUGUGCAACgUcCU 0.1% 8237 3581 GaAAuCCAGGgAAUGCUGA 0.1%
8191 3577 AGAGAAUGUGCAAuAUcCU 0.2% 8238 3581 GGAAuCCuGGgAAUGCUGA 0.2%
8192 3577 AGAGgAUGUGCAACAUcCU 0.1% 3582 3582 CGAACCCGAUCGUGCCCUC 92.1%
3578 3578 GAGAGAAUGUGCAACAUUC 93.0% 8239 3582 CGAACCCGAUCGUGCCuUC 5.1%
8193 3578 GAGAGAAUGUGCAAuAUUC 0.3% 8240 3582 CGAACCCGgUCGUGCCCUC 1.1%
8194 3578 GAGAGgAUGUGCAACAUUC 0.5% 8241 3582 CGAgCCCGAUCGUGCCCUC 0.1%
8195 3578 GAaAGAAUGUGCAACAUUC 1.2% 8242 3582 CGAgCCCGAUCGUGCCuUC 0.6%
8196 3578 GAGAGAAUGUGCAACAUcC 4.0% 8243 3582 CGAACCCaAUCGUGCCCUC 0.5%
8197 3578 GAuAGAAUGUGCAACAUUC 0.3% 8244 3582 CGAACCCcAUCGUGCCCUC 0.3%
8198 3578 GAaAGAAUGUGCAAuAUUC 0.4% 8245 3582 CGAACCCGAUCGUuCCCUC 0.1%
8199 3578 GAGAGAAUGUGCAACgUcC 0.1% 8246 3582 CGAACCCuAUCGUGCCCUC 0.1%
8200 3578 GAGAGAAUGUGCAAuAUcC 0.2% 3583 3583 CGGAACCCAGGAAAUGCUG 92.1%
8201 3578 GAGAGgAUGUGCAACAUcC 0.1% 8247 3583 CGGAACCCAGGgAAUGCUG 0.6%
3579 3579 AUUUCAAACAGCUGCACAA 92.7% 8248 3583 CGGAAuCCAGGAAAUGCUG 1.2%
8202 3579 AUUUCAAACAGCUGCACAg 0.9% 8249 3583 uGGAACCCAGGAAAUGCUG 0.1%
8203 3579 AUUUCAAACAGCUGCgCAA 0.3% 8250 3583 CGaAACCCAGGAAAUGCUG 0.4%
8204 3579 AUUUCAAACgGCUGCACAA 0.4% 8251 3583 GGGAACCCAaGAAAUGCUG 0.1%
8205 3579 AUUUCAAgCAGCUGCACAA 0.1% 8252 3583 CGGAACCCAGGAAAcGCUG 0.9%
8206 3579 AuUUCAgACAGCUGCACAg 0.3% 8253 3583 CGGAACCCAGGAAAUaCUG 0.1%
8207 3579 AcUUCAAACAGCUGCACAA 0.2% 8254 3583 CGaAACCCAGGgAAUGCUG 0.4%
8208 3579 AUUcCAAACAGCUGCACAA 0.1% 8255 3583 CGGAAuCCuGGgAAUGCUG 0.1%
8209 3579 AUUUCAAACAGCaGCACAA 2.1% 3584 3584 AAUGCUGAGAUCGAAGAUC 91.7%
8210 3579 AUUUCAAACAGCUGCuCAA 0.1% 8256 3584 AAUGCUGAGAUuGAAGAUC 1.3%
8211 3579 AUUUCAAACuGCUGCACAA 0.5% 8257 3584 AAcGCUGAGAUCGAAGAUC 0.2%
8212 3579 AUUUCAAACgGCaGCACAA 0.1% 8258 3584 AAUaCUGAGAUCGAAGAUC 0.1%
8213 3579 AUUUCAgACAGCUGCcCAg 0.3% 8259 3584 AAUGCUGAaAUCGAAGAUC 0.9%
8214 3579 AUUcCAAACAGCaGCACAA 1.9% 8260 3584 AAUGCUGAGAUaGAAGAUC 0.1%
8215 3579 AUUUCAgACcGCaGCACAA 0.1% 8261 3584 AAUGCUGAGuUCGAAGAUC 0.5%
3580 3580 UUUCAAACAGCUGCACAAA 92.7% 8262 3584 AAcGCUGAGAUuGAAGAUC 0.2%
8216 3580 UUUCAAACAGCUGCACAgA 0.9% 8263 3584 AAUGCUGAaAUuGAAGAUC 4.1%
8217 3580 UUUCAAACAGCUGCgCAAA 0.3% 8264 3584 AAUGCUGAGAUuGAAGAcC 0.2%
8218 3580 UUUCAAACgGCUGCACAAA 0.4% 8265 3584 AAUGCUGAGuaCGAAGAUC 0.1%
8219 3580 UUUCAAgCAGCUGCACAAA 0.1% 8266 3584 AAcGCUGAaAUuGAAGAUC 0.5%
8220 3580 UUUCAgACAGCUGCACAgA 0.3% 3585 3585 AUGCUGAGAUCGAAGAUCU 91.7%
8221 3580 cUUCAAACAGCUGCACAAA 0.2% 8267 3585 AUGCUGAGAUuGAAGAUCU 1.3%
8222 3580 UUcCAAACAGCUGCACAAA 0.1% 8268 3585 AcGCUGAGAUCGAAGAUCU 0.2%
8223 3580 UUUCAAACAGCaGCACAAA 2.0% 8269 3585 AUaCUGAGAUCGAAGAUCU 0.1%
8224 3580 UUUCAAACAGCUGCuCAAA 0.1% 8270 3585 AUGCUGAaAUCGAAGAUCU 0.9%
8225 3580 UUUCAAACuGCUGCACAAA 0.5% 8271 3585 AUGCUGAGAUaGAAGAUCU 0.1%
8226 3580 UUUCAAACgGCaGCACAAA 0.1% 8272 3585 AUGCUGAGuUCGAAGAUCU 0.5%
8227 3580 UUUCAgACAGCUGCcCAgA 0.4% 8273 3585 AcGCUGAGAUuGAAGAUCU 0.2%
8228 3580 UUcCAAACAGCaGCACAAA 1.7% 8274 3585 AUGCUGAaAUuGAAGAUCU 4.1%
8229 3580 UUUCAAACAGCaGCACAAc 0.1% 8275 3585 AUGCUGAGAUuGAAGAcCU 0.2%
3581 3581 GGAACCCAGAAAAUGCUGA 92.2% 8276 3585 AUGCUGAGuaCGAAGAUCU 0.1%
8277 3585 AcGCUGAaAUuGAAGAUCU 0.5% 8323 3590 ACCCAGGgAAUGCUGAGAU 0.6%
3586 3586 GAUUCUACAUCCAAAUGUG 91.6% 8324 3590 AuCCAGGAAAUGCUGAGAU 1.0%
8278 3586 GAUUCUACAUCCAgAUGUG 2.3% 8325 3590 ACCCAaGAAAUGCUGAGAU 0.1%
8279 3586 GAUUCUACAUuCAAAUGUG 0.9% 8326 3590 ACCCAGGAAAcGCUGAGAU 0.4%
8280 3586 GAUUCUAuAUCCAAAUGUG 0.5% 8327 3590 ACCCAGGAAAUaCUGAGAU 0.1%
8281 3586 GAUUuUACAUCCAAAUGUG 0.2% 8328 3590 ACCCAGGAAAUGCUGAaAU 1.0%
8282 3586 GgUUCUACAUCCAAAUGUG 0.3% 8329 3590 ACCCAGGgAAUGCUGAGuU 0.4%
8283 3586 aAUUCUACAUCCAAAUGUG 0.1% 8330 3590 AuCCAGGAAAUGCUGAaAU 0.1%
8284 3586 GAUUCUACAUaCAgAUGUG 0.1% 8331 3590 AuCCAGGAAAUGCUGAGuU 0.1%
8285 3586 GgUUCUACAUaCAgAUGUG 1.7% 8332 3590 AuCCAGGgAAUGCUGAaAU 0.1%
8286 3586 aAUUCUACAUaCAAAUGUG 0.2% 8333 3590 AuCCuGGgAAUGCUGAGAU 0.3%
3587 3587 GCUGAGAUCGAAGAUCUCA 91.5% 8334 3590 ACCCAGGAAAcGCUGAaAU 0.5%
8287 3587 GCUGAGAUuGAAGAUCUCA 1.4% 8335 3590 ACCCAGGAAAUGCUGAGua 0.1%
8288 3587 GCUGAGAUuGAAGAUCUuA 0.1% 8336 3590 ACCCAGGAAAUGCUGAaga 0.1%
8289 3587 aCUGAGAUCGAAGAUCUCA 0.1% 3591 3591 UCAGACAUGAGGGCAGAAA 91.4%
8290 3587 GCUGAaAUCGAAGAUCUCA 0.9% 8337 3591 UCAGACAUGAGGGCAGAgA 0.2%
8291 3587 GCUGAGAUaGAAGAUCUCA 0.1% 8338 3591 UCAGACAUGAGGGCgGAAA 0.1%
8292 3587 GCUGAGAUCGAAGAUCUaA 0.4% 8339 3591 UCAGAuAUGAGGGCAGAAA 0.4%
8293 3587 GCUGAGuUCGAAGAUCUCA 0.5% 8340 3591 UCgGACAUGAGGGCAGAAA 0.4%
8294 3587 GCUGAaAUuGAAGAUCUCA 4.4% 8341 3591 UCAGACAUGAGaGCAGAAA 1.4%
8295 3587 GCUGAaAUuGAAGAUCUuA 0.2% 8342 3591 UCAGACAUGAGGGCuGAAA 0.4%
8296 3587 GCUGAGAUuGAAGAcCUuA 0.2% 8343 3591 UCuGACAUGAGGGCAGAAA 0.3%
8297 3587 GCUGAGuaCGAAGAUCUCA 0.1% 3592 3592 UGCUGAGAUCGAAGAUCUC 91.4%
3588 3588 UCAUGGCAGCAUUCACUGG 91.5% 8344 3592 UGCUGAGAUuGAAGAUCUC 1.2%
8298 3588 UCAUGGCAGCAUUCAuUGG 0.2% 8345 3592 UGCUGAGAUuGAAGAUCUu 0.1%
8299 3588 UCAUGGCAGCAUUCgCUGG 0.1% 8346 3592 cGCUGAGAUCGAAGAUCUC 0.2%
8300 3588 UCAUGGCAGCAUUuACUGG 0.4% 8347 3592 UaCUGAGAUCGAAGAUCUC 0.1%
8301 3588 UCAUGGCAGCgUUCACUGG 0.1% 8348 3592 UGGUGAaAUCGAAGAUCUC 0.9%
8302 3588 UuAUGGCAGCAUUCACUGG 1.6% 8349 3592 UGCUGAGAUaGAAGAUCUC 0.1%
8303 3588 UCAUGGCAGCAUUCACcGG 0.3% 8350 3592 UGCUGAGAUCGAAGAUCUa 0.4%
8304 3588 UCAUGGCAGCuUUCACUGG 0.3% 8351 3592 UGCUGAGuUCGAAGAUCUC 0.5%
8305 3588 UCAUGGCuGCAUUCACUGG 0.3% 8352 3592 cGCUGAGAUuGAAGAUCUC 0.2%
8306 3588 UuAUGGCAGCAUUCAaUGG 0.4% 8353 3592 UGCUGAaAUuGAAGAUCUC 4.1%
8307 3588 UuAUGGCAGCAUUuACaGG 1.7% 8354 3592 UGCUGAGAUuGAAGAcCUu 0.2%
8308 3588 UuAUGGCAGCuUUCAuUGG 0.2% 8355 3592 UGCUGAGuaCGAAGAUCUC 0.1%
8309 3588 UuAUGGCAGCuUUCgCUGG 0.1% 8356 3592 cGCUGAaAUuGAAGAUCUC 0.3%
8310 3588 UCAUGGCgGCcUUCACaGG 0.2% 3593 3593 CAGACAUGAGGGCAGAAAU 91.4%
8311 3588 UCAUuGCAGCAUUuACaGG 0.1% 8357 3593 CAGACAUGAGGGCAGAgAU 0.2%
3589 3589 AAUGGUGCUCUCUGCUUUU 91.5% 8358 3593 CAGACAUGAGGGCgGAAAU 0.1%
8312 3589 AAUGGUGCUuUCUGCUUUU 0.2% 8359 3593 CAGAuAUGAGGGCAGAAAU 0.4%
8313 3589 gAUGGUGCUCUCUGCUUUU 1.8% 8360 3593 CgGACAUGAGGGCAGAAAU 0.4%
8314 3589 AAUGGUaCUCUCUGCUUUU 0.8% 8361 3593 CAGACAUGAGaGCAGAAAU 1.4%
8315 3589 AAUGGUGCUaUCUGCUUUU 0.1% 8362 3593 CAGACAUGAGGGCuGAAAU 0.4%
8316 3589 AAUGGUGCUCUCaGCUUUU 0.1% 8363 3593 CuGACAUGAGGGCAGAAAU 0.3%
8317 3589 AAUGGUGCUCUCUGCcUUU 1.1% 3594 3594 AACCCAGGAAAUGCUGAGA 91.4%
8318 3589 AAUGGUGCUCUCUGCgUUU 0.1% 8364 3594 AACCCAGGgAAUGCUGAGA 0.6%
8319 3589 AAUGGUGCUCUCUGCUUUc 0.2% 8365 3594 AAuCCAGGAAAUGCUGAGA 1.0%
8320 3589 AAUGGUaCUCUCUGCaUUU 1.7% 8366 3594 AACCCAaGAAAUGCUGAGA 0.1%
8321 3589 AAUGGUcCUCUcUGCaUUU 0.2% 8367 3594 AACCCAGGAAAcGCUGAGA 0.4%
8322 3589 AAUGGUuCUCUCUGCaUUU 1.9% 8368 3594 AACCCAGGAAAUaCUGAGA 0.1%
3590 3590 ACCCAGGAAUUGCUGAGAU 91.4% 8369 3594 AACCCAGGAAAUGCUGAaA 1.0%
8370 3594 AACCCAGGAAAUGCUGAGu 0.1% 3598 3598 CCAGGAAAUGCCGAGACCG 91.1%
8371 3594 AACCCAGGAAAUGCUGAag 0.1% 8418 3598 CCAGGAAAUGCUGAGAUuG 1.2%
8372 3594 AACCCAGGgAAUGCUGAGu 0.4% 8419 3598 CCAGGgAAUGCUGAGAUCG 0.6%
8373 3594 AAuCCAGGAAAUGCUGAaA 0.1% 8420 3598 CCAaGAAAUGCUGAGAUCG 0.1%
8374 3594 AAuCCAGGAAAUGCUGAGu 0.1% 8421 3598 CCAGGAAAcGCUGAGAUCG 0.2%
8375 3594 AAuCCAGGgAAUGCUGAaA 0.1% 8422 3598 CCAGGAAAUaCUGAGAUCG 0.1%
8376 3594 AAuCCuGGgAAUGCUGAGA 0.3% 8423 3598 CCAGGAAAUGCUGAaAUCG 0.9%
8377 3594 AACCCAGGAAAcGCUGAaA 0.5% 8424 3598 CCAGGAAAUGCUGAGAUaG 0.1%
3595 3595 AAAUGCUGAGAUCGAAGAU 91.2% 8425 3598 CCAGGAAAUGCUGAGuUCG 0.1%
8378 3595 AAAUGCUGAGAUuGAAGAU 1.2% 8426 3598 CCAGGAAAcGCUGAGAUuG 0.2%
8379 3595 gAAUGCUGAGAUCGAAGAU 0.6% 8427 3598 CCAGGAAAUGCUGAaAUuG 0.2%
8380 3595 gAAUGCUGAGAUuGAAGAU 0.1% 8428 3598 CCAGGgAAUGCUGAGuUCG 0.4%
8381 3595 AAAcGCUGAGAUCGAAGAU 0.2% 8429 3598 CCAGGgAAUGCUGAaAUuG 0.1%
8382 3595 AAAUaCUGAGAUCGAAGAU 0.1% 8430 3598 CCuGGgAAUGCUGAGAUuG 0.3%
8383 3595 AAAUGCUGAaAUCGAAGAU 0.9% 8431 3598 CCAGGAAAUGCUGAGuaCG 0.1%
8384 3595 AAAUGCUGAGAUaGAAGAU 0.1% 8432 3598 CCAGGAAAcGCUGAaAUuG 0.5%
8385 3595 AAAUGCUGAGuUCGAAGAU 0.1% 3599 3599 AGGAAAUGCUGAGAUCGAA 91.1%
8386 3595 AAAcGCUGAGAUuGAAGAU 0.2% 8433 3599 AGGAAAUGCUGAGAUuGAA 1.2%
8387 3595 AAAUGCUGAaAUuGAAGAU 0.2% 8434 3599 AGGgAAUGCUGAGAUCGAA 0.6%
8388 3595 gAAUGCUGAGuUCGAAGAU 0.4% 8435 3599 AaGAAAUGCUGAGAUCGAA 0.1%
8389 3595 gAAUGCUGAaAUuGAAGAU 3.9% 8436 3599 AGGAAAcGCUGAGAUCGAA 0.2%
8390 3595 gAAUGCUGAGAUuGAAGAc 0.2% 8437 3599 AGGAAAUaCUGAGAUCGAA 0.1%
8391 3595 AAAUGCUGAGuaCGAAGAU 0.1% 8438 3599 AGGAAAUGCUGAaAUCGAA 0.9%
8392 3595 AAAcGCUGAaAUuGAAGAU 0.5% 8439 3599 AGGAAAUGCUGAGAUaGAA 0.1%
3596 3596 GAAAUGCUGAGAUCGAAGA 91.2% 8440 3599 AGGAAAUGCUGAGuUCGAA 0.1%
8393 3596 GAAAUGCUGAGAUuGAAGA 1.2% 8441 3599 AGGAAAcGCUGAGAUuGAA 0.2%
8394 3596 GgAAUGCUGAGAUCGAAGA 0.6% 8442 3599 AGGAAAUGCUGAaAUuGAA 0.2%
8395 3596 GgAAUGCUGAGAUuGAAGA 0.3% 8443 3599 AGGgAAUGCUGAGuUCGAA 0.4%
8396 3596 GAAAcGCUGAGAUCGAAGA 0.2% 8444 3599 AGGgAAUGCUGAaAUuGAA 0.1%
8397 3596 GAAAUaCUGAGAUCGAAGA 0.1% 8445 3599 uGGgAAUGCUGAGAUuGAA 0.3%
8398 3596 GAAAUGCUGAaAUCGAAGA 0.9% 8446 3599 AGGAAAUGCUGAGuaCGAA 0.1%
8399 3596 GAAAUGCUGAGAUaGAAGA 0.1% 8447 3599 AGGAAAcGCUGAaAUuGAA 0.5%
8400 3596 GAAAUGCUGAGuUCGAAGA 0.1% 3600 3600 CAGGAAAUGCUGAGAUCGA 91.1%
8401 3596 GAAAcGCUGAGAUuGAAGA 0.2% 8448 3600 CAGGAAAUGCUGAGAUuGA 1.2%
8402 3596 GAAAUGCUGAaAUuGAAGA 0.2% 8449 3600 CAGGgAAUGCUGAGAUCGA 0.6%
8403 3596 GgAAUGCUGAGuUCGAAGA 0.4% 8450 3600 CAaGAAAUGCUGAGAUCGA 0.1%
8404 3596 GgAAUGCUGAaAUuGAAGA 3.9% 8451 3600 CAGGAAAcGCUGAGAUCGA 0.2%
8405 3596 GAAAUGCUGAGuaCGAAGA 0.1% 8452 3600 CAGGAAAUaCUGAGAUCGA 0.1%
8406 3596 GAAAcGCUGAaAUuGAAGA 0.5% 8453 3600 CAGGAAAUGCUGAaAUCGA 0.9%
3597 3597 GAACCCAGGAAAUGCUGAG 91.2% 8454 3600 CAGGAAAUGCUGAGAUaGA 0.1%
8407 3597 GAACCCAGGgAAUGCUGAG 0.6% 8455 3600 CAGGAAAUGCUGAGuUCGA 0.1%
8408 3597 GAAuCCAGGAAAUGCUGAG 1.1% 8456 3600 CAGGAAAcGCUGAGAUuGA 0.2%
8409 3597 aAACCCAGGAAAUGCUGAG 0.3% 8457 3600 CAGGAAAUGCUGAaAUuGA 0.2%
8410 3597 GAACCCAaGAAAUGCUGAG 0.1% 8458 3600 CAGGgAAUGCUGAGuUCGA 0.4%
8411 3597 GAACCCAGGAAAcGCUGAG 0.4% 8459 3600 CAGGgAAUGCUGAaAUuGA 0.1%
8412 3597 GAACCCAGGAAAUaCUGAG 0.1% 8460 3600 CuGGgAAUGCUGAGAUuGA 0.3%
8413 3597 GAACCCAGGAAAUGCUGAa 1.0% 8461 3600 CAGGAAAUGCUGAGuaCGA 0.1%
8414 3597 aAACCCAGGgAAUGCUGAG 0.4% 8462 3600 CAGGAAAcGCUGAaAUuGA 0.5%
8415 3597 GAAuCCAGGAAAUGCUGAa 0.1% 3601 3601 GGAAAUGCUGAGAUCGAAG 91.1%
8416 3597 aAACCCAGGAAAUGCUGAa 0.1% 8463 3601 GGAAAUGCUGAGAUuGAAG 1.2%
8417 3597 GAACCCAGGAAAcGCUGAa 0.5% 8464 3601 GGgAAUGCUGAGAUCGAAG 0.6%
8465 3601 GGgAAUGCUGAGAUuGAAG 0.3% 8512 3605 GgAAAUUUCAAgCAGCUGC 0.1%
8466 3601 aGAAAUGCUGAGAUCGAAG 0.1% 8513 3605 GgAAAUUUCAgACAGCUGC 0.3%
8467 3601 GGAAAcGCUGAGAUCGAAG 0.2% 8514 3605 GAAAAcUUCAAACAGCUGC 0.2%
8468 3601 GGAAAUaCUGAGAUCGAAG 0.1% 8515 3605 GAAAAUUcCAAACAGCUGC 0.1%
8469 3601 GGAAAUGCUGAaAUCGAAG 0.9% 8516 3605 GAAAAUUUCAAACuGCUGC 0.1%
8470 3601 GGAAAUGCUGAGAUaGAAG 0.1% 8517 3605 GuAAAUUUCAAACAGCUGC 0.1%
8471 3601 GGAAAUGCUGAGuUCGAAG 0.1% 8518 3605 GgAAAUUUCAAACAGCaGC 2.1%
8472 3601 GGAAAcGCUGAGAUuGAAG 0.2% 8519 3605 GgAAAUUUCAAACuGCUGC 0.4%
8473 3601 GGAAAUGCUGAaAUuGAAG 0.2% 8520 3605 GgAAAUUUCAAACgGCaGC 0.1%
8474 3601 GGgAAUGCUGAGuUCGAAG 0.4% 8521 3605 GgAAAUUcCAAACAGCaGC 1.9%
8475 3601 GGgAAUGCUGAaAUuGAAG 3.9% 3606 3606 GGAAAAUUUCAAACAGCUG 90.1%
8476 3601 GGAAAUGCUGAGuaCGAAG 0.1% 8522 3606 GGAAAAUUUCAAACgGCUG 0.4%
8477 3601 GGAAAcGCUGAaAUuGAAG 0.5% 8523 3606 GGAAAAUUUCAgACAGCUG 0.3%
3602 3602 UGGAUCAAGUGAGAGAAAG 90.7% 8524 3606 GGgAAAUUUCAAACAGCUG 3.7%
8478 3602 UGGAUCAAGUGAGAGAgAG 0.6% 8525 3606 GGAAAgUUUCAgACAGCUG 0.1%
8479 3602 UGGAUCAAGUGAGgGAAAG 0.1% 8526 3606 GGgAAAUUUCAAgCAGCUG 0.1%
8480 3602 UGGAUCAgGUGAGAGAAAG 0.2% 8527 3606 GGgAAAUUUCAgACAGCUG 0.3%
8481 3602 UaGAUCAAGUGAGAGAAAG 0.1% 8528 3606 GGAAAAcUUCAAACAGCUG 0.2%
8482 3602 UGGAcCAAGUGAGAGAAAG 2.6% 8529 3606 GGAAAAUUcCAAACAGCUG 0.1%
8483 3602 UGGAUCAAGUaAGAGAAAG 1.5% 8530 3606 GGAAAAUUUCAAACuGCUG 0.1%
8484 3602 UGGAUCcAGUGAGAGAAAG 0.1% 8531 3606 GGuAAAUUUCAAACAGCUG 0.1%
8485 3602 UGGAUCAAGUGcGAGAgAG 1.6% 8532 3606 GGgAAAUUUCAAACAGCaG 2.1%
8486 3602 UGGAUCAgGUGcGAGAAAG 2.1% 8533 3606 GGgAAAUUUCAAACuGCUG 0.4%
8487 3602 UGGAcCAgGUGAGgGAAAG 0.1% 8534 3606 GGgAAAUUUCAAACgGCaG 0.1%
8488 3602 UGGAcCAAGUGcGAGAgAG 0.1% 8535 3606 GGgAAAUUcCAAACAGCaG 1.9%
8489 3602 UGGAcCAgGUGcGAGAAAG 0.1% 3607 3607 AAAGGAAAAUUUCAAACAG 90.0%
3603 3603 UAUGAGAGAAUGUGCAACA 90.4% 8536 3607 AAAGGAAAAUUUCAAACgG 0.4%
8490 3603 UAUGAGAGAAUGUGCAACg 0.1% 8537 3607 AAAGGAAAAUUUCAgACAG 0.3%
8491 3603 UAUGAGAGAAUGUGCAAuA 0.5% 8538 3607 AAAGGgAAAUUUCAAACAG 5.8%
8492 3603 UAUGAGAGgAUGUGCAACA 0.4% 8539 3607 AAgGGAAAAUUUCAAACAG 0.1%
8493 3603 UAcGAGAGAAUGUGCAACA 6.6% 8540 3607 AAAGGAAAgUUUCAgACAG 0.1%
8494 3603 UAUGAaAGAAUGUGCAACA 1.1% 8541 3607 AAAGGgAAAUUUCAAACgG 0.1%
8495 3603 UAUGAuAGAAUGUGCAACA 0.3% 8542 3607 AAAGGgAAAUUUCAAgCAG 0.1%
8496 3603 UAcGAGAGgAUGUGCAACA 0.2% 8543 3607 AAAGGgAAAUUUCAgACAG 0.3%
8497 3603 UAUGAaAGAAUGUGCAAuA 0.4% 8544 3607 AAAGGAAAAcUUCAAACAG 0.2%
8498 3603 UAcGAaAGAAUGUGCAACA 0.1% 8545 3607 AAAGGAAAAUUcCAAACAG 0.1%
3604 3604 AUGAGAGAAUGUGCAACAU 90.4% 8546 3607 AAAGGAAAAUUUCAAACuG 0.1%
8499 3604 AUGAGAGAAUGUGCAACgU 0.1% 8547 3607 AAAGGuAAAUUUCAAACAG 0.1%
8500 3604 AUGAGAGAAUGUGCAAuAU 0.5% 8548 3607 AAAGGgAAAUUcCAAACAG 1.9%
8501 3604 AUGAGAGgAUGUGCAACAU 0.4% 8549 3607 AAAGGgAAAUUUCAAACuG 0.4%
8502 3604 AcGAGAGAAUGUGCAACAU 6.6% 8550 3607 AAAGGgAAAUUUCAgACcG 0.1%
8503 3604 AUGAaAGAAUGUGCAACAU 1.1% 3608 3608 AGGAAAAUUUCAAACAGCU 90.0%
8504 3604 AUGAuAGAAUGUGCAACAU 0.3% 8551 3608 AGGAAAAUUUCAAACgGCU 0.4%
8505 3604 AcGAGAGgAUGUGCAACAU 0.2% 8552 3608 AGGAAAAUUUCAgACAGCU 0.3%
8506 3604 AUGAaAGAAUGUGCAAuAU 0.4% 8553 3608 AGGgAAAUUUCAAACAGCU 3.7%
8507 3604 AcGAaAGAAUGUGCAACAU 0.1% 8554 3608 gGGAAAAUUUCAAACAGCU 0.1%
3605 3605 GAAAAUUUCAAACAGCUGC 90.1% 8555 3608 AGGAAAgUUUCAgACAGCU 0.1%
8508 3605 GAAAAUUUCAAACgGCUGC 0.4% 8556 3608 AGGgAAAUUUCAAgCAGCU 0.1%
8509 3605 GAAAAUUUCAgACAGCUGC 0.3% 8557 3608 AGGgAAAUUUCAgACAGCU 0.3%
8510 3605 GgAAAUUUCAAACAGCUGC 3.7% 8558 3608 AGGAAAAcUUCAAACAGCU 0.2%
8511 3605 GAAAgUUUCAgACAGCUGC 0.1% 8559 3608 AGGAAAAUUcCAAACAGCU 0.1%
8560 3608 AGGAAAAUUUCAAACuGCU 0.1% 8578 3609 AAGGgAAAUUcCAAACAGC 1.9%
8561 3608 AGGUAAAUUUCAAACAGCU 0.1% 8579 3609 AAGGgAAAUUUCAAACuGC 0.4%
8562 3608 AGGgAAAUUUCAAACAGCa 2.1% 8580 3609 AAGGgAAAUUUCAgACcGC 0.1%
8563 3608 AGGgAAAUUUCAAACuGCU 0.4% 3610 3610 CCCAGGAAAUGCUGAGAUC 90.0%
8564 3608 AGGgAAAUUUCAAACgGCa 0.1% 8581 3610 CCCAGGAAAUGCUGAGAUu 1.2%
8565 3608 AGGgAAAUUc AAACAGCa 1.9% 8582 3610 CCCAGGgAAUGCUGAGAUC 0.6%
3609 3609 AAGGAAAAUUUCAAACAGC 90.0% 8583 3610 uCCAGGAAAUGCUGAGAUC 1.0%
8566 3609 AAGGAAAAUUUCAAACgGC 0.4% 8584 3610 CCCAaGAAAUGCUGAGAUC 0.1%
8567 3609 AAGGAAAAUUUCAgACAGC 0.3% 8585 3610 CCCAGGAAAcGCUGAGAUC 0.2%
8568 3609 AAGGgAAAUUUCAAACAGC 5.8% 8586 3610 CCCAGGAAAUaCUGAGAUC 0.1%
8569 3609 AgGGAAAAUUUCAAACAGC 0.1% 8587 3610 CCCAGGAAAUGCUGAaAUC 0.9%
8570 3609 AAGGAAAgUUUCAgACAGC 0.1% 8588 3610 CCCAGGAAAUGCUGAGAUa 0.1%
8571 3609 AAGGgAAAUUUCAAACgGC 0.1% 8589 3610 CCCAGGAAAcGCUGAGAUu 0.2%
8572 3609 AAGGgAAAUUUCAAgCAGC 0.1% 8590 3610 CCCAGGAAAUGCUGAaAUu 0.1%
8573 3609 AAGGgAAAUUUCAgACAGC 0.3% 8591 3610 CCCAGGgAAUGCUGAGuUC 0.4%
8574 3609 AAGGAAAAcUUCAAACAGC 0.2% 8592 3610 uCCAGGAAAUGCUGAGuUC 0.1%
8575 3609 AAGGAAAAUUcCAAACAGC 0.1% 8593 3610 uCCAGGAAAUGCUGAaAUu 0.1%
8576 3609 AAGGAAAAUUUCAAACuGC 0.1% 8594 3610 CCCAGGAAAUGCUGAGuaC 0.1%
8577 3609 AAGGuAAAUUUCAAACAGC 0.1% 8595 3610 CCCAGGAAAcGCUGAaAUu 0.5%
表20-5.从表1-7所列甲型流感片段7(M1&M2)序列得到的保守和小变体19-mer序列。保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化。
SeQ ID RefID 匹配序列 %总数 8619 4432 CGCUCACCGUGCCuAGUGA 0.1%
4427 4427 UUCACGCUCACCGUGCCCA 99.2% 8620 4432 CGCUCACuGUGCCCAGUGA 0.2%
8596 4427 UUCACGCUCACCGUGCCuA 0.1% 8621 4432 CaCUCACCGUGCCCAGUGA 0.2%
8597 4427 UUCACGCUCACuGUGCCCA 0.2% 8622 4432 CGCUCACCGUGCCaAGUGA 0.2%
8598 4427 UUCACaCUCACCGUGCCCA 0.2% 8623 4432 CGCUCACCGUGCCCAcUGA 0.3%
8599 4427 UUCACGCUCACCGUGCCaA 0.2% 8624 4432 CGCUCACCGUGCCCAGcGA 0.1%
4428 4428 CAGGCCCCCUCAAAGCCGA 99.0% 8625 4432 CGCUCACCGUGCCCAGUaA 0.1%
8600 4428 CgGGCCCCCUCAAAGCCGA 0.2% 4433 4433 ACGCUCACCGUGCCCAGUG 98.8%
8601 4428 uAGGCCCCCUCAAAGCCGA 0.1% 8626 4433 ACGCUCACCGUGCCuAGUG 0.1%
8602 4428 CAGGCCCCCUCAAAGCCcA 0.5% 8627 4433 ACGCUCACuGUGCCCAGUG 0.2%
8603 4428 CcGGCCCCCUCAAAGCCGA 0.2% 8628 4433 ACaCUCACCGUGCCCAGUG 0.2%
4429 4429 UCAGGCCCCCUCAAAGCCG 99.0% 8629 4433 ACGCUCACCGUGCCaAGUG 0.2%
8604 4429 UCgGGCCCCCUCAAAGCCG 0.2% 8630 4433 ACGCUCACCGUGCCCAcUG 0.3%
8605 4429 UuAGGCCCCCUCAAAGCCG 0.1% 8631 4433 ACGCUCACCGUGCCCAGcG 0.1%
8606 4429 UCAGGCCCCCUCAAAGCCc 0.5% 8632 4433 ACGCUCACCGUGCCCAGUa 0.1%
8607 4429 UCcGGCCCCCUCAAAGCCG 0.2% 4434 4434 UCACCGUGCCCAGUGAGCG 98.7%
4430 4430 UCACGCUCACCGUGCCCAG 98.9% 8633 4434 UCACCGUGCCuAGUGAGCG 0.1%
8608 4430 UCACGCUCACCGUGCCuAG 0.1% 8634 4434 UCACuGUGCCCAGUGAGCG 0.2%
8609 4430 UCACGCUCACuGUGCCCAG 0.2% 8635 4434 UCACCGUGCCaAGUGAGCG 0.2%
8610 4430 UCACaCUCACCGUGCCCAG 0.2% 8636 4434 UCACCGUGCCCAcUGAGCG 0.3%
8611 4430 UCACGCUCACCGUGCCaAG 0.2% 8637 4434 UCACCGUGCCCAGcGAGCG 0.1%
8612 4430 UCACGCUCACCGUGCCCAc 0.3% 8638 4434 UCACCGUGCCCAGUaAGCG 0.1%
4431 4431 CACGCUCACCGUGCCCAGU 98.8% 8639 4434 UCACCGUGCCCAGUGAaCG 0.3%
8613 4431 CACGCUCACCGUGCCuAGU 0.1% 4435 4435 CUCACCGUGCCCAGUGAGC 98.7%
8614 4431 CACGCUCACuGUGCCCAGU 0.2% 8640 4435 CUCACCGUGCCuAGUGAGC 0.1%
8615 4431 CACaCUCACCGUGCCCAGU 0.2% 8641 4435 CUCACuGUGCCCAGUGAGC 0.2%
8616 4431 CACGCUCACCGUGCCaAGU 0.2% 8642 4435 CUCACCGUGCCaAGUGAGC 0.2%
8617 4431 CACGCUCACCGUGCCCAcU 0.3% 8643 4435 CUCACCGUGCCCAcUGAGC 0.3%
8618 4431 CACGCUCACCGUGCCCAGc 0.1% 8644 4435 CUCACCGUGCCCAGcGAGC 0.1%
4432 4432 CGCUCACCGUGCCCAGUGA 98.8% 8645 4435 CUCACCGUGCCCAGUaAGC 0.1%
8646 4435 CUCACCGUGCCCAGUGAaC 0.3% 8695 4442 GGACUGCAGCGUAGACGuU 0.2%
4436 4436 GCUCACCGUGCCCAGUGAG 98.5% 8696 4442 GGACUGCAaCGUAGACGCU 1.7%
8647 4436 GCUCACCGUGCCuAGUGAG 0.1% 8697 4442 GGACUGCAGCGUAaACGCU 0.1%
8648 4436 GCUCACuGUGCCCAGUGAG 0.2% 8698 4442 GGACUGCAGCGUAcACGCU 0.1%
8649 4436 aCUCACCGUGCCCAGUGAG 0.2% 8699 4442 GGACUGCAGCGUAGACGaU 1.5%
8650 4436 GCUCACCGUGCCaAGUGAG 0.2% 8700 4442 GGACUGCAGCGUAGACGgU 0.3%
8651 4436 GCUCACCGUGCCCAcUGAG 0.3% 8701 4442 GGACUGCAGCGUAuACGCU 0.2%
8652 4436 GCUCACCGUGCCCAGcGAG 0.1% 8702 4442 GGACUGCAaCGUAuACGCU 0.1%
8653 4436 GCUCACCGUGCCCAGUaAG 0.1% 8703 4442 GGACUGCAGCGUAuACGaU 0.1%
8654 4436 GCUCACCGUGCCCAGUGAa 0.3% 4443 4443 UGCAGCGUAGACGCUUUGU 95.5%
4437 4437 AUCUUGAGGCUCUCAUGGA 96.4% 8704 4443 UGCAGCGUAGACGuUUUGU 0.2%
8655 4437 AUCUUGAGGuUCUCAUGGA 0.9% 8705 4443 UGCAaCGUAGACGCUUUGU 1.7%
8656 4437 AcCUUGAGGCUCUCAUGGA 0.3% 8706 4443 UGCAGCGUAaACGCUUUGU 0.1%
8657 4437 AUCUaGAGGCUCUCAUGGA 0.1% 8707 4443 UGCAGCGUAcACGCUUUGU 0.1%
8658 4437 AUCUcGAGGCUCUCAUGGA 1.6% 8708 4443 UGCAGCGUAGACGaUUUGU 1.5%
8659 4437 AUCUUGAaGCUCUCAUGGA 0.1% 8709 4443 UGCAGCGUAGACGCUUcGU 0.1%
8660 4437 AUCUUGAGGCaCUCAUGGA 0.3% 8710 4443 UGCAGCGUAGACGgUUUGU 0.3%
8661 4437 AUCUUGAGGCUCUaAUGGA 0.1% 8711 4443 UGCAGCGUAuACGCUUUGU 0.2%
8662 4437 AUCUUGAGGCUCUCAcGGA 0.1% 8712 4443 UGCAaCGUAuACGCUUUGU 0.1%
8663 4437 AUCUUGAGGuUCUCAcGGA 0.1% 8713 4443 UGCAGCGUAuACGaUUUGU 0.1%
4438 4438 GAUCUUGAGGCUCUCAUGG 96.4% 4444 4444 ACUGCAGCGUAGACGCUUU 95.5%
8664 4438 GAUCUUGAGGuUCUCAUGG 0.9% 8714 4444 ACUGCAGCGUAGACGuUUU 0.2%
8665 4438 GAcCUUGAGGCUCUCAUGG 0.3% 8715 4444 ACUGCAaCGUAGACGCUUU 1.7%
8666 4438 GAUCUaGAGGCUCUCAUGG 0.1% 8716 4444 ACUGCAGCGUAaACGCUUU 0.1%
8667 4438 GAUCUcGAGGCUCUCAUGG 1.6% 8717 4444 ACUGCAGCGUAcACGCUUU 0.1%
8668 4438 GAUCUUGAaGCUCUCAUGG 0.1% 8718 4444 ACUGCAGCGUAGACGaUUU 1.5%
8669 4438 GAUCUUGAGGCaCUCAUGG 0.3% 8719 4444 ACUGCAGCGUAGACGCUUc 0.1%
8670 4438 GAUCUUGAGGCUCUaAUGG 0.1% 8720 4444 ACUGCAGCGUAGACGgUUU 0.3%
8671 4438 GAUCUUGAGGCUCUCAcGG 0.1% 8721 4444 ACUGCAGCGUAuACGCUUU 0.2%
8672 4438 GAUCUUGAGGuUCUCAcGG 0.1% 8722 4444 ACUGCAaCGUAuACGCUUU 0.1%
4439 4439 UGUCACCUCUGACUAAGGG 96.3% 8723 4444 ACUGCAGCGUAuACGaUUU 0.1%
8673 4439 UGUCACCUCUGACUAgGGG 0.1% 4445 4445 CUGCAGCGUAGACGCUUUG 95.5%
8674 4439 UGUCACCUCUaACUAAGGG 0.9% 8724 4445 CUGCAGCGUAGACGuUUUG 0.2%
8675 4439 UGUCACCUCUGACaAAGGG 0.4% 8725 4445 CUGCAaCGUAGACGCUUUG 1.7%
8676 4439 UGUCACCUCUGACcAAGGG 0.3% 8726 4445 CUGCAGCGUAaACGCUUUG 0.1%
8677 4439 UGUCACCUCUGACUAAaGG 2.0% 8727 4445 CUGCAGCGUAcACGCUUUG 0.1%
8678 4439 UGUCACCUCUuACUAAGGG 0.1% 8728 4445 CUGCAGCGUAGACGaUUUG 1.5%
4440 4440 CUGUCACCUCUGACUAAGG 96.3% 8729 4445 CUGCAGCGUAGACGCUUcG 0.1%
8679 4440 CUGUCACCUCUGACUAgGG 0.1% 8730 4445 CUGCAGCGUAGACGgUUUG 0.3%
8680 4440 CUGUCACCUCUaACUAAGG 0.9% 8731 4445 CUGCAGCGUAuACGCUUUG 0.2%
8681 4440 CUGUCACCUCUGACaAAGG 0.4% 8732 4445 CUGCAaCGUAuACGCUUUG 0.1%
8682 4440 CUGUCACCUCUGACcAAGG 0.3% 8733 4445 CUGCAGCGUAuACGaUUUG 0.1%
8683 4440 CUGUCACCUCUGACUAAaG 1.9% 4446 4446 GCUAUGGAGCAAAUGGCUG 95.4%
8684 4440 CUGUCACCUCUuACUAAGG 0.1% 8734 4446 GCcAUGGAGCAAAUGGCUG 0.4%
8685 4440 uUGUCACCUCUGACUAAaG 0.1% 8735 4446 GCUAUGGAaCAAAUGGCUG 0.4%
4441 4441 GACUGCAGCGUAGACGCUU 95.6% 8736 4446 GCUAUGGAGCAcAUGGCUG 0.1%
8686 4441 GACUGCAGCGUAGACGuUU 0.2% 8737 4446 GCcAUGGAGCAgAUGGCUG 1.5%
8687 4441 GACUGCAaCGUAGACGCUU 1.7% 8738 4446 GCUAUGGAGCAgAUGGCaG 0.3%
8688 4441 GACUGCAGCGUAaACGCUU 0.1% 8739 4446 GCUAUGGAGCAgAUGGCgG 1.3%
8689 4441 GACUGCAGCGUAcACGCUU 0.1% 8740 4446 GCUAUGGAaCAgAUGGuUG 0.1%
8690 4441 GACUGCAGCGUAGACGaUU 1.5% 8741 4446 GCcAUGGAaCAAAUGGCUG 0.4%
8691 4441 GACUGCAGCGUAGACGgUU 0.3% 8742 4446 GCcAUGGAGCAgAUGGCaG 0.1%
8692 4441 GACUGCAGCGUAuACGCUU 0.2% 4447 4447 UGGCUAAAGACAAGACCAA 95.4%
8693 4441 GACUGCAaCGUAuACGCUU 0.1% 8743 4447 UGGCUAAAGACAAGACCgA 3.5%
8694 4441 GACUGCAGCGUAuACGaUU 0.1% 8744 4447 UGGCUAAAGACAAGgCCAA 0.4%
4442 4442 GGACUGCAGCGUAGACGCU 95.6% 8745 4447 UGGCUgAAGACAAGACCAA 0.1%
8746 4447 UGGuUAAAGACAAGACCgA 0.1% 8797 4452 GGCUAAAGACAAGgCCAAU 0.4%
8747 4447 UGGCUAAAGACAAaACCAA 0.2% 8798 4452 GGCUgAAGACAAGACCAAU 0.1%
8748 4447 UGGCUAAAGACAAGACCcA 0.1% 8799 4452 GGuUAAAGACAAGACCgAU 0.1%
8749 4447 UGGCUAAAGACAAGACCuA 0.1% 8800 4452 GGCUAAAGACAAaACCAAU 0.2%
8750 4447 UGGCUAAAGACuAGACCuA 0.2% 8801 4452 GGCUAAAGACAAGACCcAU 0.1%
4448 4448 CAGCGUAGACGCUUUGUCC 95.4% 8802 4452 GGCUAAAGACAAGACCuAU 0.1%
8751 4448 CAGCGUAGACGCUUUGUuC 0.1% 8803 4452 GGCUAAAGACuAGACCuAU 0.2%
8752 4448 CAGCGUAGACGuUUUGUCC 0.2% 4453 4453 CGUAGACGCUUUGUCCAAA 94.9%
8753 4448 CAaCGUAGACGCUUUGUCC 1.5% 8804 4453 CGUAGACGCUUUGUCCAgA 2.0%
8754 4448 CAGCGUAaACGCUUUGUCC 0.1% 8805 4453 CGUAGACGCUUUGUuCAAA 0.3%
8755 4448 CAGCGUAcACGCUUUGUCC 0.1% 8806 4453 CGUAGACGuUUUGUCCAAA 0.2%
8756 4448 CAGCGUAGACGaUUUGUCC 1.5% 8807 4453 CGUAcACGCUUUGUCCAAA 0.1%
8757 4448 CAGCGUAGACGCUUcGUCC 0.1% 8808 4453 CGUAGACGaUUUGUCCAAA 1.5%
8758 4448 CAGCGUAGACGgUUUGUCC 0.3% 8809 4453 CGUAGACGCUUcGUCCAAA 0.1%
8759 4448 CAGCGUAuACGCUUUGUCC 0.2% 8810 4453 CGUAGACGgUUUGUCCAAA 0.3%
8760 4448 CAaCGUAGACGCUUUGUuC 0.2% 8811 4453 CGUAuACGCUUUGUCCAAA 0.3%
8761 4448 CAaCGUAuACGCUUUGUCC 0.1% 8812 4453 CGUAaACGCUUUGUCCAgA 0.1%
8762 4448 CAGCGUAuACGaUUUGUCC 0.1% 8813 4453 CGUAcACuCUUUGUCCAAA 0.1%
4449 4449 CUAUGGAGCAAAUGGCUGG 95.4% 8814 4453 CGUAuACGaUUUGUCCAAA 0.1%
8763 4449 CcAUGGAGCAAAUGGCUGG 0.4% 4454 4454 GUAGACGCUUUGUCCAAAA 94.9%
8764 4449 CUAUGGAaCAAAUGGCUGG 0.4% 8815 4454 GUAGACGCUUUGUCCAgAA 2.0%
8765 4449 CUAUGGAGCAcAUGGCUGG 0.1% 8816 4454 GUAGACGCUUUGUuCAAAA 0.3%
8766 4449 CcAUGGAGCAgAUGGCUGG 1.5% 8817 4454 GUAGACGuUUUGUCCAAAA 0.2%
8767 4449 CUAUGGAGCAgAUGGCaGG 0.3% 8818 4454 GUAcACGCUUUGUCCAAAA 0.1%
8768 4449 CUAUGGAGCAgAUGGCgGG 1.3% 8819 4454 GUAGACGaUUUGUCCAAAA 1.5%
8769 4449 CUAUGGAaCAgAUGGuUGG 0.1% 8820 4454 GUAGACGCUUcGUCCAAAA 0.1%
8770 4449 CcAUGGAaCAAAUGGCUGG 0.4% 8821 4454 GUAGACGgUUUGUCCAAAA 0.3%
8771 4449 CcAUGGAGCAgAUGGCaGG 0.1% 8822 4454 GUAuACGCUUUGUCCAAAA 0.3%
4450 4450 AGCGUAGACGCUUUGUCCA 95.4% 8823 4454 GUAaACGCUUUGUCCAgAA 0.1%
8772 4450 AGCGUAGACGCUUUGUuCA 0.1% 8824 4454 GUAcACuCUUUGUCCAAAA 0.1%
8773 4450 AGCGUAGACGuUUUGUCCA 0.2% 8825 4454 GUAuACGaUUUGUCCAAAA 0.1%
8774 4450 AaCGUAGACGCUUUGUCCA 1.5% 4455 4455 AGACGCUUUGUCCAAAAUG 94.8%
8775 4450 AGCGUAaACGCUUUGUCCA 0.1% 8826 4455 AGACGCUUUGUCCAgAAUG 1.3%
8776 4450 AGCGUAcACGCUUUGUCCA 0.1% 8827 4455 AGACGCUUUGUuCAAAAUG 0.3%
8777 4450 AGCGUAGACGaUUUGUCCA 1.5% 8828 4455 AGACGuUUUGUCCAAAAUG 0.2%
8778 4450 AGCGUAGACGCUUcGUCCA 0.1% 8829 4455 AcACGCUUUGUCCAAAAUG 0.1%
8779 4450 AGCGUAGACGgUUUGUCCA 0.3% 8830 4455 AGACGaUUUGUCCAAAAUG 1.5%
8780 4450 AGCGUAuACGCUUUGUCCA 0.2% 8831 4455 AGACGCUUcGUCCAAAAUG 0.1%
8781 4450 AaCGUAGACGCUUUGUuCA 0.2% 8832 4455 AGACGCUUUGUCCAAAAcG 0.1%
8782 4450 AaCGUAuACGCUUUGUCCA 0.1% 8833 4455 AGACGgUUUGUCCAAAAUG 0.3%
8783 4450 AGCGUAuACGaUUUGUCCA 0.1% 8834 4455 AuACGCUUUGUCCAAAAUG 0.3%
4451 4451 GCAGCGUAGACGCUUUGUC 95.4% 8835 4455 AaACGCUUUGUCCAgAAUG 0.1%
8784 4451 GCAGCGUAGACGCUUUGUu 0.1% 8836 4455 AGACGCUUUGUCCAgAAcG 0.7%
8785 4451 GCAGCGUAGACGuUUUGUC 0.2% 8837 4455 AcACuCUUUGUCCAAAAUG 0.1%
8786 4451 GCAaCGUAGACGCUUUGUC 1.5% 8838 4455 AuACGaUUUGUCCAAAAUG 0.1%
8787 4451 GCAGCGUAaACGCUUUGUC 0.1% 4456 4456 UAGACGCUUUGUCCAAAAU 94.8%
8788 4451 GCAGCGUAcACGCUUUGUC 0.1% 8839 4456 UAGACGCUUUGUCCAgAAU 1.3%
8789 4451 GCAGCGUAGACGaUUUGUC 1.5% 8840 4456 UAGACGCUUUGUuCAAAAU 0.3%
8790 4451 GCAGCGUAGACGCUUcGUC 0.1% 8841 4456 UAGACGuUUUGUCCAAAAU 0.2%
8791 4451 GCAGCGUAGACGgUUUGUC 0.3% 8842 4456 UAcACGCUUUGUCCAAAAU 0.1%
8792 4451 GCAGCGUAuACGCUUUGUC 0.2% 8843 4456 UAGACGaUUUGUCCAAAAU 1.5%
8793 4451 GCAaCGUAGACGCUUUGUu 0.2% 8844 4456 UAGACGCUUcGUCCAAAAU 0.1%
8794 4451 GCAaCGUAuACGCUUUGUC 0.1% 8845 4456 UAGACGCUUUGUCCAAAAc 0.1%
8795 4451 GCAGCGUAuACGaUUUGUC 0.1% 8846 4456 UAGACGgUUUGUCCAAAAU 0.3%
4452 4452 GGCUAAAGACAAGACCAAU 95.4% 8847 4456 UAuACGCUUUGUCCAAAAU 0.3%
8796 4452 GGCUAAAGACAAGACCgAU 3.5% 8848 4456 UAaACGCUUUGUCCAgAAU 0.1%
8849 4456 UAGACGCUUUGUCCAgAAc 0.7% 8901 4460 CGCUUUGUCCAgAAcGCCC 0.7%
8850 4456 UAcACuCUUUGUCCAAAAU 0.1% 4461 4461 UCAGUUAUUCUGCUGGUGC 94.2%
8851 4456 UAuACGaUUUGUCCAAAAU 0.1% 8902 4461 UCgGUUAUUCUGCUGGUGC 0.1%
4457 4457 GACGCUUUGUCCAAAAUGC 94.7% 8903 4461 UuAGUUAUUCUGCUGGUGC 0.5%
8852 4457 GACGCUUUGUCCAAAAUGu 0.1% 8904 4461 UCAGcUAUUCUGCUGGUGC 0.2%
8853 4457 GACGCUUUGUCCAgAAUGC 1.3% 8905 4461 UCAGUUAcUCUGCUGGUGC 1.0%
8854 4457 GACGCUUUGUuCAAAAUGC 0.3% 8906 4461 UCAGUUAUUCcGCUGGUGC 0.1%
8855 4457 GACGuUUUGUCCAAAAUGC 0.2% 8907 4461 UCAGUUAUUCgGCUGGUGC 0.1%
8856 4457 cACGCUUUGUCCAAAAUGC 0.1% 8908 4461 UCAGUUAUUCUGCcGGUGC 0.2%
8857 4457 GACGaUUUGUCCAAAAUGC 1.5% 8909 4461 UCAGUUAUUCUGCUGGcGC 0.1%
8858 4457 GACGCUUcGUCCAAAAUGC 0.1% 4462 4462 AUUCUGCUGGUGCACUUGC 94.1%
8859 4457 GACGCUUUGUCCAAAAcGC 0.1% 8910 4462 AUUCUGCUGGUGCgCUUGC 0.9%
8860 4457 GACGgUUUGUCCAAAAUGC 0.3% 8911 4462 AcUCUGCUGGUGCACUUGC 1.0%
8861 4457 uACGCUUUGUCCAAAAUGC 0.3% 8912 4462 AUUCcGCUGGUGCACUUGC 0.1%
8862 4457 aACGCUUUGUCCAgAAUGC 0.1% 8913 4462 AUUCgGCUGGUGCACUUGC 0.1%
8863 4457 GACGCUUUGUCCAgAAcGC 0.7% 8914 4462 AUUCUGCcGGUGCACUUGC 0.2%
8864 4457 cACuCUUUGUCCAAAAUGC 0.1% 8915 4462 AUUCUGCUGGcGCACUUGC 0.1%
8865 4457 uACGaUUUGUCCAAAAUGC 0.1% 4463 4463 CUCAUGGAAUGGCUAAAGA 94.1%
4458 4458 ACGCUUUGUCCAAAAUGCC 94.3% 8916 4463 CUCAUGGAAUGGCUgAAGA 0.1%
8866 4458 ACGCUUUGUCCAAAAUGCu 0.6% 8917 4463 CUCAUGGAAUGGuUAAAGA 0.1%
8867 4458 ACGCUUUGUCCAAAAUGuC 0.1% 8918 4463 CUCAUGGAgUGGCUAAAGA 5.4%
8868 4458 ACGCUUUGUCCAgAAUGCC 1.4% 8919 4463 CUaAUGGAAUGGCUAAAGA 0.1%
8869 4458 ACGCUUUGUuCAAAAUGCC 0.3% 8920 4463 CUCAcGGAAUGGCUAAAGA 0.2%
8870 4458 ACGuUUUGUCCAAAAUGCC 0.2% 4464 4464 UCAUGGAAUGGCUAAAGAC 94.1%
8871 4458 ACGaUUUGUCCAAAAUGCC 1.6% 8921 4464 UCAUGGAAUGGCUgAAGAC 0.1%
8872 4458 ACGCUUcGUCCAAAAUGCC 0.1% 8922 4464 UCAUGGAAUGGuUAAAGAC 0.1%
8873 4458 ACGCUUUGUCCAAAAcGCC 0.1% 8923 4464 UCAUGGAgUGGCUAAAGAC 5.4%
8874 4458 ACGCUUUGUCCAAAAUGCa 0.2% 8924 4464 UaAUGGAAUGGCUAAAGAC 0.1%
8875 4458 ACGgUUUGUCCAAAAUGCC 0.3% 8925 4464 UCAcGGAAUGGCUAAAGAC 0.2%
8876 4458 ACuCUUUGUCCAAAAUGCC 0.1% 4465 4465 UAUUCUGCUGGUGCACUUG 94.1%
8877 4458 ACGCUUUGUCCAgAAcGCC 0.7% 8926 4465 UAUUCUGCUGGUGCgCUUG 0.9%
4459 4459 GCUUUGUCCAAAAUGCCCU 94.3% 8927 4465 UAcUCUGCUGGUGCACUUG 1.0%
8878 4459 GCUUUGUCCAAAAUGCuCU 0.6% 8928 4465 UAUUCcGCUGGUGCACUUG 0.1%
8879 4459 GCUUUGUCCAAAAUGuCCU 0.1% 8929 4465 UAUUCgGCUGGUGCACUUG 0.1%
8880 4459 GCUUUGUCCAgAAUGCCCU 1.4% 8930 4465 UAUUCUGCcGGUGCACUUG 0.2%
8881 4459 GCUUUGUuCAAAAUGCCCU 0.3% 8931 4465 UAUUCUGCUGGcGCACUUG 0.1%
8882 4459 GuUUUGUCCAAAAUGCCCU 0.2% 4466 4466 AUGGAAUGGCUAAAGACAA 94.0%
8883 4459 GaUUUGUCCAAAAUGCCCU 1.6% 8932 4466 AUGGAAUGGCUgAAGACAA 0.1%
8884 4459 GCUUcGUCCAAAAUGCCCU 0.1% 8933 4466 AUGGAAUGGuUAAAGACAA 0.1%
8885 4459 GCUUUGUCCAAAAcGCCCU 0.1% 8934 4466 AUGGAgUGGCUAAAGACAA 5.4%
8886 4459 GCUUUGUCCAAAAUGCaCU 0.2% 8935 4466 AcGGAAUGGCUAAAGACAA 0.2%
8887 4459 GgUUUGUCCAAAAUGCCCU 0.3% 8936 4466 AUGGAAUGGCUAAAGACuA 0.2%
8888 4459 uCUUUGUCCAAAAUGCCCU 0.1% 4467 4467 CUCAGUUAUUCUGCUGGUG 94.0%
8889 4459 GCUUUGUCCAgAAcGCCCU 0.7% 8937 4467 CUCgGUUAUUCUGCUGGUG 0.1%
4460 4460 CGCUUUGUCCAAAAUGCCC 94.3% 8938 4467 CUuAGUUAUUCUGCUGGUG 0.5%
8890 4460 CGCUUUGUCCAAAAUGCuC 0.6% 8939 4467 uUCAGUUAUUCUGCUGGUG 0.2%
8891 4460 CGCUUUGUCCAAAAUGuCC 0.1% 8940 4467 CUCAGcUAUUCUGCUGGUG 0.2%
8892 4460 CGCUUUGUCCAgAAUGCCC 1.4% 8941 4467 CUCAGUUAcUCUGCUGGUG 1.0%
8893 4460 CGCUUUGUuCAAAAUGCCC 0.3% 8942 4467 CUCAGUUAUUCcGCUGGUG 0.1%
8894 4460 CGuUUUGUCCAAAAUGCCC 0.2% 8943 4467 CUCAGUUAUUCgGCUGGUG 0.1%
8895 4460 CGaUUUGUCCAAAAUGCCC 1.6% 8944 4467 CUCAGUUAUUCUGCcGGUG 0.2%
8896 4460 CGCUUcGUCCAAAAUGCCC 0.1% 8945 4467 CUCAGUUAUUCUGCUGGcG 0.1%
8897 4460 CGCUUUGUCCAAAAcGCCC 0.1% 4468 4468 GUUAUUCUGCUGGUGCACU 94.0%
8898 4460 CGCUUUGUCCAAAAUGCaC 0.2% 8946 4468 GUUAUUCUGCUGGUGCgCU 0.9%
8899 4460 CGgUUUGUCCAAAAUGCCC 0.3% 8947 4468 GcUAUUCUGCUGGUGCACU 0.2%
8900 4460 CuCUUUGUCCAAAAUGCCC 0.1% 8948 4468 GUUAcUCUGCUGGUGCACU 1.0%
8949 4468 GUUAUUCcGCUGGUGCACU 0.1% 8999 4474 AGUUAUUCUGCcGGUGCAC 0.2%
8950 4468 GUUAUUCgGCUGGUGCACU 0.1% 9000 4474 AGUUAUUCUGCUGGcGCAC 0.1%
8951 4468 GUUAUUCUGCcGGUGCACU 0.2% 4475 4475 GGAAUGGCUAAAGACAAGA 93.7%
8952 4468 GUUAUUCUGCUGGcGCACU 0.1% 9001 4475 GGAAUGGCUAAAGACAAGg 0.4%
4469 4469 UGGCCAGCACUACAGCUAA 94.0% 9002 4475 GGAAUGGCUgAAGACAAGA 0.1%
8953 4469 UGGCCAGCACUACgGCUAA 1.5% 9003 4475 GGAAUGGuUAAAGACAAGA 0.1%
8954 4469 UGGCCAGCA1UACAGCUAA 0.1% 9004 4475 GGAgUGGCUAAAGACAAGA 5.4%
8955 4469 UGGCCAGuACUACAGCUAA 0.1% 9005 4475 GGAAUGGCUAAAGACAAaA 0.2%
8956 4469 UGGCCAGuACUACgGCUAA 0.3% 9006 4475 GGAAUGGCUAAAGACuAGA 0.2%
8957 4469 UaGCCAGCACUACAGCUAA 1.2% 4476 4476 AAUGGCUAAAGACAAGACC 93.7%
8958 4469 UGGCaAGCACUACAGCUAA 0.1% 9007 4476 AAUGGCUAAAGACAAGgCC 0.4%
8959 4469 UGGCCAGCACcACAGCUAA 0.3% 9008 4476 AAUGGCUgAAGACAAGACC 0.1%
8960 4469 UGGCCAGCACUACAGCcAA 0.3% 9009 4476 AAUGGuUAAAGACAAGACC 0.1%
8961 4469 UGGCCAGCACUACAGCUuA 0.1% 9010 4476 AgUGGCUAAAGACAAGACC 5.4%
8962 4469 UGGCCAGCACUACcGCUAA 0.1% 9011 4476 AAUGGCUAAAGACAAaACC 0.2%
8963 4469 UaGCCAGCACUACgGCUAA 1.2% 9012 4476 AAUGGCUAAAGACuAGACC 0.2%
8964 4469 UGGCuAGCACcACAGCUAA 0.1% 4477 4477 GAAUGGCUAAAGACAAGAC 93.7%
8965 4469 UaGCCAGCACaACAGCUAA 0.4% 9013 4477 GAAUGGCUAAAGACAAGgC 0.4%
8966 4469 UaGCCAGCACUACAGCcAA 0.1% 9014 4477 GAAUGGCUgAAGACAAGAC 0.1%
8967 4469 UaGCCAGCACcACgGCUAA 0.1% 9015 4477 GAAUGGuUAAAGACAAGAC 0.1%
4470 4470 UUAUUCUGCUGGUGCACUU 94.0% 9016 4477 GAgUGGCUAAAGACAAGAC 5.4%
8968 4470 UUAUUCUGCUGGUGCgCUU 0.9% 9017 4477 GAAUGGCUAAAGACAAaAC 0.2%
8969 4470 cUAUUCUGCUGGUGCACUU 0.2% 9018 4477 GAAUGGCUAAAGACuAGAC 0.2%
8970 4470 UUAcUCUGCUGGUGCACUU 1.0% 4478 4478 UCCAUGGGGCCAAAGAAAU 93.4%
8971 4470 UUAUUCcGCUGGUGCACUU 0.1% 9019 4478 UCCAUGGGGCCAAAGAAgU 0.4%
8972 4470 UUAUUCgGCUGGUGCACUU 0.1% 9020 4478 UCCAUGGGGCCAAAGAgAU 0.1%
8973 4470 UUAUUCUGCcGGUGCACUU 0.2% 9021 4478 UCCAUGGGGCCAAAGgAAU 0.2%
8974 4470 UUAUUCUGCUGGcGCACUU 0.1% 9022 4478 UCCAUGGGGCCAAgGAAAU 0.1%
4471 4471 CAUGGAAUGGCUAAAGACA 94.0% 9023 4478 UCCAUGGGGCuAAAGAAAU 0.9%
8975 4471 CAUGGAAUGGCUgAAGACA 0.1% 9024 4478 UCuAUGGGGCCAAAGAAAU 0.2%
8976 4471 CAUGGAAUGGuUAAAGACA 0.1% 9025 4478 UuCAUGGGGCCAAAGAAAU 0.5%
8977 4471 CAUGGAgUGGCUAAAGACA 5.4% 9026 4478 UCCAUGGGGCCAAgGAggU 0.1%
8978 4471 aAUGGAAUGGCUAAAGACA 0.1% 9027 4478 UCCAUGGaGCCAAAGAAAU 0.4%
8979 4471 CAcGGAAUGGCUAAAGACA 0.2% 9028 4478 UCCAcGGGGCCAAAGAAgU 0.3%
8980 4471 CAUGGAAUGGCUAAAGACu 0.2% 9029 4478 UuCAUGGGGCCAAAGuAAU 0.1%
4472 4472 UGGAAUGGCUAAAGACAAG 93.9% 4479 4479 GCGUAGACGCUUUGUCCAA 93.4%
8981 4472 UGGAAUGGCUgAAGACAAG 0.1% 9030 4479 GCGUAGACGCUUUGUCCAg 2.0%
8982 4472 UGGAAUGGuUAAAGACAAG 0.1% 9031 4479 GCGUAGACGCUUUGUuCAA 0.1%
8983 4472 UGGAgUGGCUAAAGACAAG 5.4% 9032 4479 GCGUAGACGuUUUGUCCAA 0.2%
8984 4472 cGGAAUGGCUAAAGACAAG 0.2% 9033 4479 aCGUAGACGCUUUGUCCAA 1.5%
8985 4472 UGGAAUGGCUAAAGACAAa 0.2% 9034 4479 GCGUAcACGCUUUGUCCAA 0.1%
8986 4472 UGGAAUGGCUAAAGACuAG 0.2% 9035 4479 GCGUAGACGaUUUGUCCAA 1.5%
4473 4473 UCUCAUGGAAUGGCUAAAG 93.9% 9036 4479 GCGUAGACGCUUcGUCCAA 0.1%
8987 4473 UCUCAUGGAAUGGCUgAAG 0.1% 9037 4479 GCGUAGACGgUUUGUCCAA 0.3%
8988 4473 UCUCAUGGAAUGGuUAAAG 0.1% 9038 4479 GCGUAuACGCUUUGUCCAA 0.2%
8989 4473 UCUCAUGGAgUGGCUAAAG 5.4% 9039 4479 aCGUAGACGCUUUGUuCAA 0.2%
8990 4473 aCUCAUGGAAUGGCUAAAG 0.3% 9040 4479 GCGUAaACGCUUUGUCCAg 0.1%
8991 4473 UCUaAUGGAAUGGCUAAAG 0.1% 9041 4479 aCGUAuACGCUUUGUCCAA 0.1%
8992 4473 UCUCAcGGAAUGGCUAAAG 0.2% 9042 4479 GCGUAuACGaUUUGUCCAA 0.1%
4474 4474 AGUUAUUCUGCUGGUGCAC 93.9% 4480 4480 CAGUUAUUCUGCUGGUGCA 93.4%
8993 4474 AGUUAUUCUGCUGGUGCgC 0.9% 9043 4480 CAGUUAUUCUGCUGGUGCg 0.9%
8994 4474 gGUUAUUCUGCUGGUGCAC 0.1% 9044 4480 CgGUUAUUCUGCUGGUGCA 0.1%
8995 4474 AGcUAUUCUGCUGGUGCAC 0.2% 9045 4480 uAGUUAUUCUGCUGGUGCA 0.5%
8996 4474 AGUUAcUCUGCUGGUGCAC 1.0% 9046 4480 CAGcUAUUCUGCUGGUGCA 0.2%
8997 4474 AGUUAUUCcGCUGGUGCAC 0.1% 9047 4480 CAGUUAcUCUGCUGGUGCA 1.0%
8998 4474 AGUUAUUCgGCUGGUGCAC 0.1% 9048 4480 CAGUUAUUCcGCUGGUGCA 0.1%
9049 4480 CAGUUAUUCgGCUGGUGCA 0.1% 9099 4486 GAaGCUCUCAUGGAAUGGC 0.1%
9050 4480 CAGUUAUUCUGCcGGUGCA 0.2% 9100 4486 GAGGCaCUCAUGGAAUGGC 0.3%
9051 4480 CAGUUAUUCUGCUGGcGCA 0.1% 9101 4486 GAGGCUCUaAUGGAAUGGC 0.1%
4481 4481 UUCCAUGGGGCCAAAGAAA 93.4% 9102 4486 GAGGCUCUCAcGGAAUGGC 0.1%
9052 4481 UUCCAUGGGGCCAAAGAAg 0.4% 9103 4486 GAGGuUCUCAcGGAAUGGC 0.1%
9053 4481 UUCCAUGGGGCCAAAGAgA 0.1% 4487 4487 GCUCUCAUGGAAUGGCUAA 93.0%
9054 4481 UUCCAUGGGGCCAAAGgAA 0.2% 9104 4487 GCUCUCAUGGAAUGGCUgA 0.1%
9055 4481 UUCCAUGGGGCCAAgGAAA 0.1% 9105 4487 GCUCUCAUGGAAUGGuUAA 0.1%
9056 4481 UUCCAUGGGGCuAAAGAAA 0.9% 9106 4487 GCUCUCAUGGAgUGGCUAA 5.4%
9057 4481 UUCuAUGGGGCCAAAGAAA 0.2% 9107 4487 GuUCUCAUGGAAUGGCUAA 0.9%
9058 4481 UUuCAUGGGGCCAAAGAAA 0.5% 9108 4487 GCaCUCAUGGAAUGGCUAA 0.3%
9059 4481 UUCCAUGGGGCCAAgGAgg 0.1% 9109 4487 GCUCUaAUGGAAUGGCUAA 0.1%
9060 4481 UUCCAUGGaGCCAAAGAAA 0.4% 9110 4487 GCUCUCAcGGAAUGGCUAA 0.1%
9061 4481 UUCCAcGGGGCCAAAGAAg 0.3% 9111 4487 GuUCUCAcGGAAUGGCUAA 0.1%
9062 4481 UUuCAUGGGGCCAAAGuAA 0.1% 4488 4488 CUCUCAUGGAAUGGCUAAA 93.0%
4482 4482 CACCUCUGACUAAGGGGAU 93.2% 9112 4488 CUCUCAUGGAAUGGCUgAA 0.1%
9063 4482 CACCUCUGACUAgGGGGAU 0.1% 9113 4488 CUCUCAUGGAAUGGuUAAA 0.1%
9064 4482 CACCUCUaACUAAGGGGAU 0.9% 9114 4488 CUCUCAUGGAgUGGCUAAA 5.4%
9065 4482 CACCUCUGACaAAGGGGAU 0.4% 9115 4488 uUCUCAUGGAAUGGCUAAA 0.9%
9066 4482 CACCUCUGACcAAGGGGAU 0.2% 9116 4488 CaCUCAUGGAAUGGCUAAA 0.3%
9067 4482 CACCUCUGACUAAaGGGAU 2.0% 9117 4488 CUCUaAUGGAAUGGCUAAA 0.1%
9068 4482 CACCUCUGACUAAGGGaAU 3.0% 9118 4488 CUCUCAcGGAAUGGCUAAA 0.1%
9069 4482 CACCUCUGACUAAGGGuAU 0.1% 9119 4488 uUCUCAcGGAAUGGCUAAA 0.1%
9070 4482 CACCUCUuACUAAGGGGAU 0.1% 4489 4489 AUGGGGCCAAAGAAAUAGC 93.0%
9071 4482 CACCUCUGACcAAGGGaAU 0.1% 9120 4489 AUGGGGCCAAAGAAgUAGC 0.4%
4483 4483 GUCACCUCUGACUAAGGGG 93.2% 9121 4489 AUGGGGCCAAAGAgAUAGC 0.1%
9072 4483 GUCACCUCUGACUAgGGGG 0.1% 9122 4489 AUGGGGCCAAAGgAAUAGC 0.2%
9073 4483 GUCACCUCUaACUAAGGGG 0.9% 9123 4489 AUGGGGCCAAgGAAAUAGC 0.1%
9074 4483 GUCACCUCUGACaAAGGGG 0.4% 9124 4489 AUGGGGCuAAAGAAAUAGC 0.9%
9075 4483 GUCACCUCUGACcAAGGGG 0.2% 9125 4489 AUGGaGCCAAAGAAAUAGC 0.4%
9076 4483 GUCACCUCUGACUAAaGGG 2.0% 9126 4489 AUGGGGCCAAAGAAAUAuC 0.2%
9077 4483 GUCACCUCUGACUAAGGGa 3.0% 9127 4489 AUGGGGCCAAAGAAAUcGC 0.5%
9078 4483 GUCACCUCUGACUAAGGGu 0.1% 9128 4489 AUGGGGCCAAAGuAAUAGC 0.1%
9079 4483 GUCACCUCUuACUAAGGGG 0.1% 9129 4489 AcGGGGCCAAAGAAgUAGC 0.3%
9080 4483 GUCACCUCUGACcAAGGGa 0.1% 9130 4489 AUGGGGCCAAAGAAAUcuC 0.4%
4484 4484 UCACCUCUGACUAAGGGGA 93.2% 4490 4490 AGGCUCUCAUGGAAUGGCU 93.0%
9081 4484 UCACCUCUGACUAgGGGGA 0.1% 9131 4490 AGGCUCUCAUGGAAUGGuU 0.1%
9082 4484 UCACCUCUaACUAAGGGGA 0.9% 9132 4490 AGGCUCUCAUGGAgUGGCU 5.4%
9083 4484 UCACCUCUGACaAAGGGGA 0.4% 9133 4490 AGGuUCUCAUGGAAUGGCU 0.9%
9084 4484 UCACCUCUGACcAAGGGGA 0.2% 9134 4490 AaGCUCUCAUGGAAUGGCU 0.1%
9085 4484 UCACCUCUGACUAAaGGGA 2.0% 9135 4490 AGGCaCUCAUGGAAUGGCU 0.3%
9086 4484 UCACCUCUGACUAAGGGaA 3.0% 9136 4490 AGGCUCUaAUGGAAUGGCU 0.1%
9087 4484 UCACCUCUGACUAAGGGuA 0.1% 9137 4490 AGGCUCUCAcGGAAUGGCU 0.1%
9088 4484 UCACCUCUuACUAAGGGGA 0.1% 9138 4490 AGGuUCUCAcGGAAUGGCU 0.1%
9089 4484 UCACCUCUGACcAAGGGaA 0.1% 4491 4491 GGCUCUCAUGGAAUGGCUA 92.9%
4485 4485 CUGGUGCACUUGCCAGUUG 93.0% 9139 4491 GGCUCUCAUGGAAUGGCUg 0.1%
9090 4485 CUGGUGCACUUGCuAGUUG 2.4% 9140 4491 GGCUCUCAUGGAAUGGuUA 0.1%
9091 4485 CUGGUGCgCUUGCCAGUUG 2.5% 9141 4491 GGCUCUCAUGGAgUGGCUA 5.4%
9092 4485 CcGGUGCACUUGCCAGUUG 1.7% 9142 4491 GGuUCUCAUGGAAUGGCUA 0.9%
9093 4485 CUGGcGCACUUGCCAGUUG 0.1% 9143 4491 aGCUCUCAUGGAAUGGCUA 0.1%
9094 4485 CUGGUGCgCUUGCCAGcUG 0.2% 9144 4491 GGCaCUCAUGGAAUGGCUA 0.3%
9095 4485 CcGGgGCACUUGCCAGUUG 0.1% 9145 4491 GGCUCUaAUGGAAUGGCUA 0.1%
4486 4486 GAGGCUCUCAUGGAAUGGC 93.0% 9146 4491 GGCUCUCAcGGAAUGGCUA 0.1%
9096 4486 GAGGCUCUCAUGGAAUGGu 0.1% 9147 4491 GGuUCUCAcGGAAUGGCUA 0.1%
9097 4486 GAGGCUCUCAUGGAgUGGC 5.4% 4492 4492 UUGAGGCUCUCAUGGAAUG 92.9%
9098 4486 GAGGuUCUCAUGGAAUGGC 0.9% 9148 4492 UUGAGGCUCUCAUGGAgUG 3.8%
9149 4492 UUGAGGuUCUCAUGGAAUG 0.9% 9200 4497 CUUCUACGGAAGGgGUACC 0.2%
9150 4492 UaGAGGCUCUCAUGGAAUG 0.1% 9201 4497 CUUCUACGGAgGGAGUACC 0.1%
9151 4492 UcGAGGCUCUCAUGGAAUG 0.1% 9202 4497 CUUCUACGGgAGGAGUACC 0.2%
9152 4492 UUGAaGCUCUCAUGGAAUG 0.1% 9203 4497 CUUuUACGGAAGGAGUACC 0.1%
9153 4492 UUGAGGCaCUCAUGGAAUG 0.3% 9204 4497 aUUCUACGGAAGGAGUACC 0.1%
9154 4492 UUGAGGCUCUaAUGGAAUG 0.1% 9205 4497 CUgCUACGGAAGGAGUACC 0.1%
9155 4492 UUGAGGCUCUCAcGGAAUG 0.1% 9206 4497 CUUCcACGGAAGGAGUACC 0.1%
9156 4492 UcGAGGCUCUCAUGGAgUG 1.5% 9207 4497 CUUCUACaGAAGGAGUACC 0.1%
9157 4492 UUGAGGuUCUCAcGGAAUG 0.1% 9208 4497 CUUCUACGGAAGGAaUACC 0.4%
4493 4493 UGAGGCUCUCAUGGAAUGG 92.9% 9209 4497 CUUCUACGGAAGGAGUuCC 0.1%
9158 4493 UGAGGCUCUCAUGGAgUGG 3.8% 9210 4497 CUUgUACGGAAGGAGUACC 0.1%
9159 4493 UGAGGuUCUCAUGGAAUGG 0.9% 9211 4497 CUcCUACGGAAGGAGUgCu 0.5%
9160 4493 aGAGGCUCUCAUGGAAUGG 0.1% 9212 4497 CUUCUACaGAuGGAGUACC 0.2%
9161 4493 cGAGGCUCUCAUGGAAUGG 0.1% 9213 4497 CUgCUACGGcAGGgGUACC 1.2%
9162 4493 UGAaGCUCUCAUGGAAUGG 0.1% 4498 4498 UCUUGAGGCUCUCAUGGAA 92.7%
9163 4493 UGAGGCaCUCAUGGAAUGG 0.3% 9214 4498 UCUUGAGGCUCUCAUGGAg 3.7%
9164 4493 UGAGGCUCUaAUGGAAUGG 0.1% 9215 4498 UCUUGAGGuUCUCAUGGAA 0.9%
9165 4493 UGAGGCUCUCAcGGAAUGG 0.1% 9216 4498 cCUUGAGGCUCUCAUGGAA 0.2%
9166 4493 cGAGGCUCUCAUGGAgUGG 1.5% 9217 4498 UCUaGAGGCUCUCAUGGAA 0.1%
9167 4493 UGAGGuUCUCAcGGAAUGG 0.1% 9218 4498 UCUcGAGGCUCUCAUGGAA 0.1%
4494 4494 CUUGAGGCUCUCAUGGAAU 92.9% 9219 4498 UCUUGAaGCUCUCAUGGAA 0.1%
9168 4494 CUUGAGGCUCUCAUGGAgU 3.8% 9220 4498 UCUUGAGGCaCUCAUGGAA 0.3%
9169 4494 CUUGAGGuUCUCAUGGAAU 0.9% 9221 4498 UCUUGAGGCUCUaAUGGAA 0.1%
9170 4494 CUaGAGGCUCUCAUGGAAU 0.1% 9222 4498 UCUUGAGGCUCUCAcGGAA 0.1%
9171 4494 CUcGAGGCUCUCAUGGAAU 0.1% 9223 4498 cCUUGAGGCUCUCAUGGAg 0.1%
9172 4494 CUUGAaGCUCUCAUGGAAU 0.1% 9224 4498 UCUcGAGGCUCUCAUGGAg 1.5%
9173 4494 CUUGAGGCaCUCAUGGAAU 0.3% 9225 4498 UCUUGAGGuUCUCAcGGAA 0.1%
9174 4494 CUUGAGGCUCUaAUGGAAU 0.1% 4499 4499 CUGCUGGUGCACUUGCCAG 92.7%
9175 4494 CUUGAGGCUCUCAcGGAAU 0.1% 9226 4499 CUGCUGGUGCACUUGCuAG 2.4%
9176 4494 CUcGAGGCUCUCAUGGAgU 1.5% 9227 4499 CUGCUGGUGCgCUUGCCAG 0.9%
9177 4494 CUUGAGGuUCUCAcGGAAU 0.1% 9228 4499 CcGCUGGUGCACUUGCCAG 0.1%
4495 4495 CAUGGGGCCAAAGAAAUAG 92.9% 9229 4499 CgGCUGGUGCACUUGCCAG 0.1%
9178 4495 CAUGGGGCCAAAGAAgUAG 0.4% 9230 4499 CUGCcGGUGCACUUGCCAG 0.2%
9179 4495 CAUGGGGCCAAAGAgAUAG 0.1% 9231 4499 CUGCUGGcGCACUUGCCAG 0.1%
9180 4495 CAUGGGGCCAAAGgAAUAG 0.2% 9232 4499 CaaCUGGUGCACUUGCCAG 0.1%
9181 4495 CAUGGGGCCAAgGAAAUAG 0.1% 9233 4499 CaaCUGGUGCgCUUGCCAG 1.8%
9182 4495 CAUGGGGCuAAAGAAAUAG 0.9% 4500 4500 UGCUGGUGCACUUGCCAGU 92.7%
9183 4495 uAUGGGGCCAAAGAAAUAG 0.1% 9234 4500 UGCUGGUGCACUUGCuAGU 2.4%
9184 4495 CAUGGaGCCAAAGAAAUAG 0.4% 9235 4500 UGCUGGUGCgCUUGGCAGU 0.7%
9185 4495 CAUGGGGCCAAAGAAAUAU 0.2% 9236 4500 cGCUGGUGCACUUGCCAGU 0.1%
9186 4495 CAUGGGGCCAAAGAAAUcG 0.4% 9237 4500 gGCUGGUGCACUUGCCAGU 0.1%
9187 4495 CAUGGGGCCAAAGuAAUAG 0.1% 9238 4500 UGCcGGUGCACUUGCCAGU 0.2%
9188 4495 CAcGGGGCCAAAGAAgUAG 0.3% 9239 4500 UGCUGGcGCACUUGCCAGU 0.1%
9189 4495 uAUGGGGCCAAAGAAAUcG 0.1% 9240 4500 UGCUGGUGCgCUUGCCAGc 0.2%
9190 4495 CAUGGGGCCAAAGAAAUcU 0.4% 9241 4500 aaCUGGUGCACUUGCCAGU 0.1%
4496 4496 GCUGGUGCACUUGCCAGUU 92.9% 9242 4500 aaCUGGUGCgCUUGCCAGU 1.8%
9191 4496 GCUGGUGCACUUGCuAGUU 2.4% 4501 4501 UCUGCUGGUGCACUUGCCA 92.7%
9192 4496 GCUGGUGCgCUUGCCAGUU 0.7% 9243 4501 UCUGCUGGUGCACUUGCUA 2.4%
9193 4496 aCUGGUGCACUUGCCAGUU 0.1% 9244 4501 UCUGCUGGUGCgCUUGCCA 0.9%
9194 4496 GCcGGUGCACUUGCCAGUU 0.2% 9245 4501 UCcGCUGGUGCACUUGCCA 0.1%
9195 4496 GCUGGcGCACUUGCCAGUU 0.1% 9246 4501 UCgGCUGGUGCACUUGCCA 0.1%
9196 4496 aCUGGUGCgCUUGCCAGUU 1.8% 9247 4501 UCUGCcGGUGCACUUGCCA 0.2%
9197 4496 GCUGGUGCgCUUGCCAGcU 0.2% 9248 4501 UCUGCUGGcGCACUUGCCA 0.1%
9198 4496 aCcGGUGCACUUGCCAGUU 1.5% 9249 4501 UCaaCUGGUGCACUUGCCA 0.1%
4497 4497 CUUCUACGGAAGGAGUACC 92.8% 9250 4501 UCaaCUGGUGCgCUUGCCA 1.8%
9199 4497 CUUCUACGGAAGGAGUgCC 3.4% 4502 4502 CCAUGGGGCCAAAGAAAUA 92.6%
9251 4502 CCAUGGGGCCAAAGAAgUA 0.4% 9303 4506 CcAUGAGGGAAGAAUAUCG 0.8%
9252 4502 CCAUGGGGCCAAAGAgAUA 0.1% 9304 4506 CUAUGAGGGAAGAAUAcCG 0.2%
9253 4502 CCAUGGGGCCAAAGgAAUA 0.2% 9305 4506 CUuUGAGGGAAGAAUAUCG 0.6%
9254 4502 CCAUGGGGCCAAgGAAAUA 0.1% 9306 4506 CUAUGAGGGAAcAAUAUuG 0.1%
9255 4502 CCAUGGGGCuAAAGAAAUA 0.9% 9307 4506 CUAUGAGGGAAGAgUAcCG 1.3%
9256 4502 CuAUGGGGCCAAAGAAAUA 0.1% 9308 4506 uUAUGAGGGAAGAAUAUgG 0.1%
9257 4502 uCAUGGGGCCAAAGAAAUA 0.5% 9309 4506 CcAUGAGGGAAGAAUAUCa 0.1%
9258 4502 CCAUGGaGCCAAAGAAAUA 0.4% 9310 4506 CUAcuAGGGAAGAAUAUCG 0.1%
9259 4502 CCAUGGGGCCAAAGAAAUc 0.8% 9311 4506 CcAUGAGGGAAGAgUAUCa 0.1%
9260 4502 CCAcGGGGCCAAAGAAgUA 0.3% 4507 4507 UCUAUGAGGGAAGAAUAUC 92.4%
9261 4502 CuAUGGGGCCAAAGAAAUc 0.1% 9312 4507 UCUAUGAGGGAAGAgUAUC 3.4%
9262 4502 uCAUGGGGCCAAAGuAAUA 0.1% 9313 4507 UCUAUGAGGGAgGAAUAUC 0.8%
4503 4503 AGUCUAUGAGGGAAGAAUA 92.6% 9314 4507 UCUAUGgGGGAAGAAUAUC 0.1%
9263 4503 AGUCUAUGAGGGAAGAgUA 4.7% 9315 4507 UCcAUGAGGGAAGAAUAUC 0.9%
9264 4503 AGUCUAUGAGGGAgGAAUA 0.8% 9316 4507 UCUAUGAGGGAAGAAUAcC 0.2%
9265 4503 AGUCUAUGgGGGAAGAAUA 0.1% 9317 4507 UCUuUGAGGGAAGAAUAUC 0.6%
9266 4503 AGUuUAUGAGGGAAGAAUA 0.1% 9318 4507 UCcAUGAGGGAAGAgUAUC 0.1%
9267 4503 AGUCcAUGAGGGAAGAAUA 0.9% 9319 4507 UCUAUGAGGGAAcAAUAUu 0.1%
9268 4503 AGUCUAUGAGGGAAcAAUA 0.1% 9320 4507 UCUAUGAGGGAAGAgUAcC 1.3%
9269 4503 AGUCUuUGAGGGAAGAAUA 0.6% 9321 4507 UuUAUGAGGGAAGAAUAUg 0.1%
9270 4503 AGUCcAUGAGGGAAGAgUA 0.1% 9322 4507 UCUAcuAGGGAAGAAUAUC 0.1%
9271 4503 AGUCUAcuAGGGAAGAAUA 0.1% 4508 4508 GUCAUUUUGUCAGCAUAGA 92.2%
4504 4504 CCUUCUACGGAAGGAGUAC 92.5% 9323 4508 GUCAUUUUGUCAGCAUAGg 0.2%
9272 4504 CCUUCUACGGAAGGAGUgC 3.4% 9324 4508 GUCAUUUUGUCAGCAUgGA 0.1%
9273 4504 CCUUCUACGGAAGGgGUAC 0.2% 9325 4508 GUCAUUUUGUCAGuAUAGA 0.2%
9274 4504 CCUUCUACGGAgGGAGUAC 0.1% 9326 4508 GUCgUUUUGUCAGCAUAGA 0.1%
9275 4504 CCUUCUACGGgAGGAGUAC 0.2% 9327 4508 GUCAaUUUGUCAGCAUAGA 0.1%
9276 4504 CCUUuUACGGAAGGAGUAC 0.1% 9328 4508 GUCAUUcUGUCAGCAUAGA 0.1%
9277 4504 uCUUCUACGGAAGGAGUAC 0.1% 9329 4508 GUCAUUUUGcCAGCAUAGA 0.1%
9278 4504 CaUUCUACGGAAGGAGUAC 0.1% 9330 4508 GUCAUUUUGUCAaCAUAGA 5.1%
9279 4504 CCUgCUACGGAAGGAGUAC 0.1% 9331 4508 GUCAUUUUGUCAGCAUAaA 0.3%
9280 4504 CCUUCcACGGAAGGAGUAC 0.1% 9332 4508 GUCAUUUUGUCAGCAUAcA 0.1%
9281 4504 CCUUCUACaGAAGGAGUAC 0.1% 9333 4508 GUCgUUUUGUCAaCAUAGA 0.1%
9282 4504 CCUUCUACGGAAGGAaUAC 0.4% 9334 4508 GUCAUUUcGUCAaCAUAGA 0.1%
9283 4504 CCUUCUACGGAAGGAGUuC 0.1% 9335 4508 GUCAUUUUGUCAaCAUAGu 0.4%
9284 4504 CCUUgUACGGAAGGAGUAC 0.1% 9336 4508 GUCAUUUUGUCAuCAUAcA 0.1%
9285 4504 gCUUCUACGGAAGGAGUAC 0.2% 4509 4509 GAGUCUAUGAGGGAAGAAU 92.2%
9286 4504 CCUcCUACGGAAGGAGUgC 0.5% 9337 4509 GAGUCUAUGAGGGAAGAgU 4.7%
9287 4504 CCUUCUACaGAuGGAGUAC 0.2% 9338 4509 GAGUCUAUGAGGGAgGAAU 0.8%
9288 4504 CCUgCUACGGcAGGgGUAC 1.2% 9339 4509 GAGUCUAUGgGGGAAGAAU 0.1%
4505 4505 GUCUAUGAGGGAAGAAUAU 92.4% 9340 4509 GAGUuUAUGAGGGAAGAAU 0.1%
9289 4505 GUCUAUGAGGGAAGAgUAU 3.4% 9341 4509 aAGUCUAUGAGGGAAGAAU 0.4%
9290 4505 GUCUAUGAGGGAgGAAUAU 0.8% 9342 4509 GAGUCcAUGAGGGAAGAAU 0.9%
9291 4505 GUCUAUGgGGGAAGAAUAU 0.1% 9343 4509 GAGUCUAUGAGGGAAcAAU 0.1%
9292 4505 GUuUAUGAGGGAAGAAUAU 0.1% 9344 4509 GAGUCUuUGAGGGAAGAAU 0.6%
9293 4505 GUCcAUGAGGGAAGAAUAU 0.9% 9345 4509 GAGUCcAUGAGGGAAGAgU 0.1%
9294 4505 GUCUAUGAGGGAAcAAUAU 0.1% 9346 4509 GAGUCUAcuAGGGAAGAAU 0.1%
9295 4505 GUCUAUGAGGGAAGAAUAc 0.2% 4510 4510 UCAUUUUGUCAGCAUAGAG 92.1%
9296 4505 GUCUuUGAGGGAAGAAUAU 0.6% 9347 4510 UCAUUUUGUCAGCAUAGgG 0.2%
9297 4505 GUCcAUGAGGGAAGAgUAU 0.1% 9348 4510 UCAUUUUGUCAGCAUgGAG 0.1%
9298 4505 GUCUAUGAGGGAAGAgUAc 1.3% 9349 4510 UCAUUUUGUCAGuAUAGAG 0.2%
9299 4505 GUCUAcuAGGGAAGAAUAU 0.1% 9350 4510 UCgUUUUGUCAGCAUAGAG 0.1%
4506 4506 CUAUGAGGGAAGAAUAUCG 92.4% 9351 4510 UCAaUUUGUCAGCAUAGAG 0.1%
9300 4506 CUAUGAGGGAAGAgUAUCG 3.4% 9352 4510 UCAUUcUGUCAGCAUAGAG 0.1%
9301 4506 CUAUGAGGGAgGAAUAUCG 0.8% 9353 4510 UCAUUUUGcCAGCAUAGAG 0.1%
9302 4506 CUAUGgGGGAAGAAUAUCG 0.1% 9354 4510 UCAUUUUGUCAaCAUAGAG 3.7%
9355 4510 UCAUUUUGUCAGCAUAaAG 0.3% 9407 4514 GAGACUUcAAGAUGUCUUU 0.1%
9356 4510 UCAUUUUGUCAGCAUAcAG 0.1% 9408 4514 GAGACUUGAAaAUGUCUUU 0.3%
9357 4510 UCAUUUUGUCAGCAUAGAu 0.1% 9409 4514 GAGACUUGAAGAUGUaUUU 2.5%
9358 4510 gCAUUUUGUCAaCAUAGAG 0.1% 9410 4514 GAGACUUGAAuAUGUCUUU 0.1%
9359 4510 UCAUUUcGUCAaCAUAGAG 0.1% 9411 4514 GAaACUUGAgGAUGUCUUU 0.1%
9360 4510 UCAUUUUGUCAaCAUAGAa 1.3% 9412 4514 GAGACUgGAAGgUGUCUUU 0.1%
9361 4510 UCAUUUUGUCAaCAUAGuG 0.4% 9413 4514 GAGACaaGAAGAUGUCUUU 0.2%
9362 4510 UCgUUUUGUCAaCAUAGAa 0.1% 9414 4514 GAGACUcGAAGAcGUuUUU 0.1%
4511 4511 AGACUUGAAGAUGUCUUUG 91.9% 4515 4515 CAGAGACUUGAAGAUGUCU 91.9%
9363 4511 AGACUUGAAGAUGUuUUUG 0.8% 9415 4515 CAGAGACUUGAAGAUGUuU 0.8%
9364 4511 AGACUUGAgGAUGUCUUUG 0.4% 9416 4515 CAGAGACUUGAgGAUGUCU 0.4%
9365 4511 AGgCUUGAAGAUGUCUUUG 0.2% 9417 4515 CAGAGgCUUGAAGAUGUCU 0.2%
9366 4511 AGACUUGAgGAUGUuUUUG 1.7% 9418 4515 CAGAGACUUGAgGAUGUuU 1.7%
9367 4511 AaACUUGAAGAUGUCUUUG 1.5% 9419 4515 CAGAaACUUGAAGAUGUCU 1.5%
9368 4511 AGACUUcAAGAUGUCUUUG 0.1% 9420 4515 CAGAGACUUcAAGAUGUCU 0.1%
9369 4511 AGACUUGAAaAUGUCUUUG 0.3% 9421 4515 CAGAGACUUGAAaAUGUCU 0.3%
9370 4511 AGACUUGAAGAUGUaUUUG 2.5% 9422 4515 CAGAGACUUGAAGAUGUaU 2.5%
9371 4511 AGACUUGAAuAUGUCUUUG 0.1% 9423 4515 CAGAGACUUGAAuAUGUCU 0.1%
9372 4511 AaACUUGAgGAUGUCUUUG 0.1% 9424 4515 CAGAaACUUGAgGAUGUCU 0.1%
9373 4511 AGACUgGAAGgUGUCUUUG 0.1% 9425 4515 CAGAGACUgGAAGgUGUCU 0.1%
9374 4511 AGACaaGAAGAUGUCUUUG 0.2% 9426 4515 CAGAGACaaGAAGAUGUCU 0.2%
9375 4511 AGACUcGAAGAcGUuUUUG 0.1% 9427 4515 CAGAGACUcGAAGAcGUuU 0.1%
4512 4512 GACUUGAAGAUGUCUUUGC 91.9% 4516 4516 GUGCAGAUGCAACGAUUCA 91.7%
9376 4512 GACUUGAAGAUGUuUUUGC 0.8% 9428 4516 GUGCAGAUGCAACGgUUCA 1.8%
9377 4512 GACUUGAgGAUGUCUUUGC 0.4% 9429 4516 GUGCAGAUGCAgCGAUUCA 3.2%
9378 4512 GgCUUGAAGAUGUCUUUGC 0.2% 9430 4516 GUGCAGgUGCAACGAUUCA 0.1%
9379 4512 GACUUGAgGAUGUuUUUGC 1.7% 9431 4516 GUGCAGAUGCAgCGgUUCA 0.2%
9380 4512 aACUUGAAGAUGUCUUUGC 1.5% 9432 4516 GUaCAGAUGCAACGAUUCA 0.1%
9381 4512 GACUUcAAGAUGUCUUUGC 0.1% 9433 4516 GUGCAaAUGCAACGAUUCA 0.4%
9382 4512 GACUUGAAaAUGUCUUUGC 0.3% 9434 4516 GUaCAGAUGCAgCGAUUCA 1.9%
9383 4512 GACUUGAAGAUGUaUUUGC 2.5% 9435 4516 GUGCAaAUGCAgCGAUUCA 0.2%
9384 4512 GACUUGAAuAUGUCUUUGC 0.1% 9436 4516 GUaCAaAUGCAgCGAUUCA 0.2%
9385 4512 aACUUGAgGAUGUCUUUGC 0.1% 9437 4516 GUGCAaAUGCAgaGAUUCA 0.2%
9386 4512 GACUgGAAGgUGUCUUUGC 0.1% 4517 4517 UUCUGCUGGUGCACUUGCC 91.7%
9387 4512 GACaaGAAGAUGUCUUUGC 0.2% 9438 4517 UUCUGCUGGUGCACUUGCu 2.4%
9388 4512 GACUcGAAGAcGUuUUUGC 0.1% 9439 4517 UUCUGCUGGUGCgCUUGCC 0.9%
4513 4513 AGAGACUUGAAGAUGUCUU 91.9% 9440 4517 cUCUGCUGGUGCACUUGCC 1.0%
9389 4513 AGAGACUUGAAGAUGUuUU 0.8% 9441 4517 UUCcGCUGGUGCACUUGCC 0.1%
9390 4513 AGAGACUUGAgGAUGUCUU 0.4% 9442 4517 UUCgGCUGGUGCACUUGCC 0.1%
9391 4513 AGAGgCUUGAAGAUGUCUU 0.2% 9443 4517 UUCUGCcGGUGCACUUGCC 0.2%
9392 4513 AGAGACUUGAgGAUGUuUU 1.7% 9444 4517 UUCUGCUGGcGCACUUGCC 0.1%
9393 4513 AGAaACUUGAAGAUGUCUU 1.5% 4518 4518 UGCAGAUGCAACGAUUCAA 91.6%
9394 4513 AGAGACUUcAAGAUGUCUU 0.1% 9445 4518 UGCAGAUGCAACGAUUCAg 0.2%
9395 4513 AGAGACUUGAAaAUGUCUU 0.3% 9446 4518 UGCAGAUGCAACGgUUCAA 1.8%
9396 4513 AGAGACUUGAAGAUGUaUU 2.5% 9447 4518 UGCAGAUGCAgCGAUUCAA 3.2%
9397 4513 AGAGACUUGAAuAUGUCUU 0.1% 9448 4518 UGCAGgUGCAACGAUUCAA 0.1%
9398 4513 AGAaACUUGAgGAUGUCUU 0.1% 9449 4518 UGCAGAUGCAgCGgUUCAA 0.2%
9399 4513 AGAGACUgGAAGgUGUCUU 0.1% 9450 4518 UaCAGAUGCAACGAUUCAA 0.1%
9400 4513 AGAGACaaGAAGAUGUCUU 0.2% 9451 4518 UGCAaAUGCAACGAUUCAA 0.4%
9401 4513 AGAGACUcGAAGAcGUuUU 0.1% 9452 4518 UaCAGAUGCAgCGAUUCAA 1.9%
4514 4514 GAGACUUGAAGAUGUCUUU 91.9% 9453 4518 UGCAaAUGCAgCGAUUCAA 0.2%
9402 4514 GAGACUUGAAGAUGUuUUU 0.8% 9454 4518 UaCAaAUGCAgCGAUUCAA 0.2%
9403 4514 GAGACUUGAgGAUGUCUUU 0.4% 9455 4518 UGCAaAUGCAgaGAUUCAA 0.2%
9404 4514 GAGgCUUGAAGAUGUCUUU 0.2% 4519 4519 UAUGAGGGAAGAAUAUCGA 91.5%
9405 4514 GAGACUUGAgGAUGUuUUU 1.7% 9456 4519 UAUGAGGGAAGAAUAUCGg 1.0%
9406 4514 GAaACUUGAAGAUGUCUUU 1.5% 9457 4519 UAUGAGGGAAGAgUAUCGA 1.5%
9458 4519 UAUGAGGGAgGAAUAUcGA 0.8% 9509 4524 GGAUcCUUGAUCGUCUUUU 0.1%
9459 4519 UAUGgGGGAAGAAUAUCGA 0.1% 9510 4524 GGAUUCUUaAUCGUCUUUU 0.3%
9460 4519 UAUGAGGGAAGAgUAUCGg 1.8% 9511 4524 GGAUUCUUGAUCaUCUUUU 0.2%
9461 4519 cAUGAGGGAAGAAUAUCGA 0.8% 9512 4524 GGAUUCUUGAUCGcCUUUU 1.0%
9462 4519 UAUGAGGGAAGAAUAcCGA 0.2% 9513 4524 GGAUUgUUGAUCGUCUUUU 0.1%
9463 4519 UAUGAGGGAAGAAUAUgGA 0.1% 9514 4524 GGAUUaUUGAUCGcCUUUU 5.6%
9464 4519 UuUGAGGGAAGAAUAUCGA 0.3% 9515 4524 GGAUUaUUGAUCGgCUUUU 1.0%
9465 4519 UuUGAGGGAAGAAUAUCGg 0.3% 4525 4525 GGGGUGCAGAUGCAACGAU 90.8%
9466 4519 UAUGAGGGAAcAAUAUuGg 0.1% 9516 4525 GGGGUGCAGAUGCAACGgU 0.5%
9467 4519 UAUGAGGGAAGAgUAcCGg 1.3% 9517 4525 GGGGUGCAGAUGCAgCGAU 1.5%
9468 4519 cAUGAGGGAAGAAUAUCaA 0.1% 9518 4525 GGGGUGCAGgUGCAACGAU 0.1%
9469 4519 UAcuAGGGAAGAAUAUCGA 0.1% 9519 4525 GGaGUGCAGAUGCAACGAU 1.0%
9470 4519 cAUGAGGGAAGAgUAUCaA 0.1% 9520 4525 GGGGUGCAaAUGCAACGAU 0.3%
4520 4520 AUGGGGGUGCAGAUGCAAC 91.3% 9521 4525 GGaGUGCAGAUGCAACGgU 1.3%
9471 4520 AUGGGGGUGCAGAUGCAgC 1.5% 9522 4525 GGaGUGCAGAUGCAgCGAU 1.6%
9472 4520 AUGGGGGUGCAGgUGCAAC 0.1% 9523 4525 GGaGUGCAGAUGCAgCGgU 0.2%
9473 4520 AUGGGaGUGCAGAUGCAAC 2.3% 9524 4525 GGaGUaCAGAUGCAACGAU 0.1%
9474 4520 AUGGGGGUGCAaAUGCAAC 0.3% 9525 4525 GGaGUGCAaAUGCAACGAU 0.1%
9475 4520 AUGGGaGUGCAGAUGCAgC 1.8% 9526 4525 GGaGUaCAGAUGCAgCGAU 1.9%
9476 4520 AUGGGaGUaCAGAUGCAAC 0.1% 9527 4525 GGaGUGCAaAUGCAgCGAU 0.2%
9477 4520 AUGGGaGUGCAaAUGCAAC 0.1% 4526 4526 GGGUGCAGAUGCAACGAUU 90.8%
9478 4520 AUGGGaGUaCAGAUGCAgC 1.9% 9528 4526 GGGUGCAGAUGCAACGgUU 0.5%
9479 4520 AUGGGaGUGCAaAUGCAgC 0.2% 9529 4526 GGGUGCAGAUGCAgCGAUU 1.5%
4521 4521 UGGGGGUGCAGAUGCAACG 91.3% 9530 4526 GGGUGCAGgUGCAACGAUU 0.1%
9480 4521 UGGGGGUGCAGAUGCAgCG 1.5% 9531 4526 GaGUGCAGAUGCAACGAUU 1.0%
9481 4521 UGGGGGUGCAGgUGCAACG 0.1% 9532 4526 GGGUGCAaAUGCAACGAUU 0.3%
9482 4521 UGGGaGUGCAGAUGCAACG 2.3% 9533 4526 GaGUGCAGAUGCAACGgUU 1.3%
9483 4521 UGGGGGUGCAaAUGCAACG 0.3% 9534 4526 GaGUGCAGAUGCAgCGAUU 1.6%
9484 4521 UGGGaGUGCAGAUGCAgCG 1.8% 9535 4526 GaGUGCAGAUGCAgCGgUU 0.2%
9485 4521 UGGGaGUaCAGAUGCAACG 0.1% 9536 4526 GaGUaCAGAUGCAACGAUU 0.1%
9486 4521 UGGGaGUGCAaAUGCAACG 0.1% 9537 4526 GaGUGCAaAUGCAACGAUU 0.1%
9487 4521 UGGGaGUaCAGAUGCAgCG 1.9% 9538 4526 GaGUaCAGAUGCAgCGAUU 1.9%
9488 4521 UGGGaGUGCAaAUGCAgCG 0.2% 9539 4526 GaGUGCAaAUGCAgCGAUU 0.2%
4522 4522 ACCUCUGACUAAGGGGAUU 91.3% 4527 4527 GUGGAUUCUUGAUCGUCUU 90.8%
9489 4522 ACCUCUGACUAgGGGGAUU 0.1% 9540 4527 GUGGAUUuUUGAUCGUCUU 0.7%
9490 4522 ACCUCUaACUAAGGGGAUU 0.7% 9541 4527 aUGGAUUCUUGAUCGUCUU 0.3%
9491 4522 ACCUCUGACaAAGGGGAUU 0.4% 9542 4527 GUGGAUcCUUGAUCGUCUU 0.1%
9492 4522 ACCUCUGACcAAGGGGAUU 0.2% 9543 4527 GUGGAUUCUUaAUCGUCUU 0.3%
9493 4522 ACCUCUGACUAAaGGGAUU 2.0% 9544 4527 GUGGAUUCUUGAUCaUCUU 0.2%
9494 4522 ACCUCUGACUAAGGGaAUU 3.0% 9545 4527 GUGGAUUCUUGAUCGcCUU 1.0%
9495 4522 ACCUCUGACUAAGGGGAUc 1.9% 9546 4527 GUGGAUUgUUGAUCGUCUU 0.1%
9496 4522 ACCUCUGACUAAGGGuAUU 0.1% 9547 4527 GUGGAUUaUUGAUCGcCUU 5.6%
9497 4522 ACCUCUuACUAAGGGGAUU 0.1% 9548 4527 GUGGAUUaUUGAUCGgCUU 1.0%
9498 4522 ACCUCUaACUAAGGGGAUc 0.2% 4528 4528 GGUGCAGAUGCAACGAUUC 90.8%
9499 4522 ACCUCUGACcAAGGGaAUU 0.1% 9549 4528 GGUGCAGAUGCAACGgUUC 0.5%
4523 4523 UGGAUUCUUGAUCGUCUUU 91.1% 9550 4528 GGUGCAGAUGCAgCGAUUC 1.5%
9500 4523 UGGAUUuUUGAUCGUCUUU 0.7% 9551 4528 GGUGCAGgUGCAACGAUUC 0.1%
9501 4523 UGGAUcCUUGAUCGUCUUU 0.1% 9552 4528 aGUGCAGAUGCAACGAUUC 1.0%
9502 4523 UGGAUUCUUaAUCGUCUUU 0.3% 9553 4528 GGUGCAaAUGCAACGAUUC 0.3%
9503 4523 UGGAUUCUUGAUCaUCUUU 0.2% 9554 4528 aGUGCAGAUGCAACGgUUC 1.3%
9504 4523 UGGAUUCUUGAUCGcCUUU 1.0% 9555 4528 aGUGCAGAUGCAgCGAUUC 1.6%
9505 4523 UGGAUUgUUGAUCGUCUUU 0.1% 9556 4528 aGUGCAGAUGCAgCGgUUC 0.2%
9506 4523 UGGAUUaUUGAUCGcCUUU 5.6% 9557 4528 aGUaCAGAUGCAACGAUUC 0.1%
9507 4523 UGGAUUaUUGAUCGgCUUU 1.0% 9558 4528 aGUGCAaAUGCAACGAUUC 0.1%
4524 4524 GGAUUCUUGAUCGUCUUUU 91.1% 9559 4528 aGUaCAGAUGCAgCGAUUC 1.9%
9508 4524 GGAUUuUUGAUCGUCUUUU 0.7% 9560 4528 aGUGCAaAUGCAgCGAUUC 0.2%
4529 4529 GGGGGUGCAGAUGCAACGA 90.8% 9612 4533 UCUUCUUGAAAAaUUGCAG 0.1%
9561 4529 GGGGGUGCAGAUGCAACGg 0.5% 9613 4533 UCUUCUUGAAAAcUUGCAG 0.5%
9562 4529 GGGGGUGCAGAUGCAgCGA 1.5% 9614 4533 UCUUCUUGAAAAUUUaCAG 0.8%
9563 4529 GGGGGUGCAGgUGCAACGA 0.1% 9615 4533 UCUcaUUGAAAAUUUGCAG 0.2%
9564 4529 GGGaGUGCAGAUGCAACGA 1.0% 9616 4533 UCUcCUUGAuAAUUUGCAG 0.1%
9565 4529 GGGGGUGCAaAUGCAACGA 0.3% 4534 4534 AUGGCUAAAGACAAGACCA 90.5%
9566 4529 GGGaGUGCAGAUGCAACGg 1.3% 9617 4534 AUGGCUAAAGACAAGACCg 3.0%
9567 4529 GGGaGUGCAGAUGCAgCGA 1.6% 9618 4534 AUGGCUAAAGACAAGgCCA 0.4%
9568 4529 GGGaGUGCAGAUGCAgCGg 0.2% 9619 4534 AUGGCUgAAGACAAGACCA 0.1%
9569 4529 GGGaGUaCAGAUGCAACGA 0.1% 9620 4534 gUGGCUAAAGACAAGACCA 4.9%
9570 4529 GGGaGUGCAaAUGCAACGA 0.1% 9621 4534 AUGGuUAAAGACAAGACCg 0.1%
9571 4529 GGGaGUaCAGAUGCAgCGA 1.9% 9622 4534 gUGGCUAAAGACAAGACCg 0.51%
9572 4529 GGGaGUGCAaAUGCAgCGA 0.2% 9623 4534 AUGGCUAAAGACAAaACCA 0.2%
4530 4530 CUCUGACUAAGGGGAUUUU 90.7% 9624 4534 AUGGCUAAAGACAAGACCc 0.1%
9573 4530 CUCUGACUAgGGGGAUUUU 0.1% 9625 4534 AUGGCUAAAGACAAGACCu 0.1%
9574 4530 CUCUaACUAAGGGGAUUUU 0.7% 9626 4534 AUGGCUAAAGACuAGACCu 0.2%
9575 4530 CUCUGACaAAGGGGAUUUU 0.4% 4535 4535 AUCUUCUUGAAAAUUUGCA 90.51%
9576 4530 CUCUGACcAAGGGGAUUUU 0.2% 9627 4535 AUCUUuUUGAAAAUUUGCA 0.1%
9577 4530 CUCUGACUAAaGGGAUUUU 2.0% 9628 4535 AcCUUCUUGAAAAUUUGCA 0.1%
9578 4530 CUCUGACUAAGGGaAUUUU 3.0% 9629 4535 AUCUcCUUGAAAAUUUGCA 5.9%
9579 4530 CUCUGACUAAGGGGAUcUU 0.5% 9630 4535 AUCUUaUUGAAAAUUUGCA 1.7%
9580 4530 CUCUGAC0AAGGGGAUUcU 0.6% 9631 4535 AUCUUCUcGAAAAUUUGCA 0.1%
9581 4530 CUCUGACUAAGGGuAUUUU 0.1% 9632 4535 AUCUUCUUGAAAAaUUGCA 0.1%
9582 4530 CUCUuACUAAGGGGAUUUU 0.1% 9633 4535 AUCUUCUUGAAAAcUUGCA 0.5%
9583 4530 CUCUGACcAAGGGaAUUUU 0.1% 9634 4535 AUCUUCUUGAAAAUUUaCA 0.8%
9584 4530 CUCUGACUAAGGGGAUccU 1.4% 9635 4535 AUCUcaUUGAAAAUUUGCA 0.2%
4531 4531 CCUCUGACUAAGGGGAUUU 90.7% 9636 4535 AUCUcCUUGAuAAUUUGCA 0.1%
9585 4531 CCUCUGACUAgGGGGAUUU 0.1% 4536 4536 GAAUGGGGGUGCAGAUGCA 90.4%
9586 4531 CCUCUaACUAAGGGGAUUU 0.7% 9637 4536 GAAUGGGGGUGCAGgUGCA 0.1%
9587 4531 CCUCUGACaAAGGGGAUUU 0.4% 9638 4536 GgAUGGGGGUGCAGAUGCA 2.4%
9588 4531 CCUCUGACcAAGGGGAUUU 0.2% 9639 4536 GAAUGGGaGUGCAGAUGCA 3.9%
9589 4531 CCUCUGACUAAaGGGAUUU 2.0% 9640 4536 GAAUGGGGGUGCAaAUGCA 0.3%
9590 4531 CCUCUGACUAAGGGaAUUU 3.0% 9641 4536 GgAUGGGaGUGCAGAUGCA 0.2%
9591 4531 CCUCUGACUAAGGGGAUcU 0.5% 9642 4536 GAAUGGGaGUaCAGAUGCA 2.0%
9592 4531 CCUCUGACUAAGGGGAUUc 0.6% 9643 4536 GgAUGGGaGUGCAaAUGCA 0.5%
9593 4531 CCUCUGACUAAGGGuAUUU 0.1% 4537 4537 CGAAUGGGGGUGCAGAUGC 90.2%
9594 4531 CCUCUuACUAAGGGGAUUU 0.1% 9644 4537 CGAAUGGGGGUGCAGgUGC 0.1%
9595 4531 CCUCUGACcAAGGGaAUUU 0.1% 9645 4537 CGgAUGGGGGUGCAGAUGC 2.4%
9596 4531 CCUCUGACUAAGGGGAUcc 1.4% 9646 4537 aGAAUGGGGGUGCAGAUGC 0.2%
4532 4532 UGUGGAUUCUUGAUCGUCU 90.7% 9647 4537 CGAAUGGGaGUGCAGAUGC 3.9%
9597 4532 UGUGGAUUuUUGAUCGUCU 0.7% 9648 4537 CGAAUGGGGGUGCAaAUGC 0.3%
9598 4532 cGUGGAUUCUUGAUCGUCU 0.1% 9649 4537 CGgAUGGGaGUGCAGAUGC 0.2%
9599 4532 UaUGGAUUCUUGAUCGUCU 0.3% 9650 4537 CGAAUGGGaGUaCAGAUGC 2.0%
9600 4532 UGUGGAUcCUUGAUCGUCU 0.1% 9651 4537 CGgAUGGGaGUGCAaAUGC 0.5%
9601 4532 UGUGGAUUCUUaAUCGUCU 0.3% 4538 4538 AAUGGGGGUGCAGAUGCAA 90.2%
9602 4532 UGUGGAUUCUUGAUCaUCU 0.2% 9652 4538 AAUGGGGGUGCAGAUGCAg 0.2%
9603 4532 UGUGGAUUCUUGAUCGcCU 1.0% 9653 4538 AAUGGGGGUGCAGgUGCAA 0.1%
9604 4532 UGUGGAUUgUUGAUCGUCU 0.1% 9654 4538 gAUGGGGGUGCAGAUGCAA 1.1%
9605 4532 UGUGGAUUaUUGAUCGcCU 5.6% 9655 4538 gAUGGGGGUGCAGAUGCAg 1.3%
9606 4532 UGUGGAUUaUUGAUCGgCU 1.0% 9656 4538 AAUGGGaGUGCAGAUGCAA 2.3%
4533 4533 UCUUCUUGAAAAUUUGCAG 90.5% 9657 4538 AAUGGGGGUGCAaAUGCAA 0.3%
9607 4533 UCUUuUUGAAAAUUUGCAG 0.1% 9658 4538 AAUGGGaGUGCAGAUGCAg 1.6%
9608 4533 cCUUCUUGAAAAUUUGCAG 0.1% 9659 4538 gAUGGGaGUGCAGAUGCAg 0.2%
9609 4533 UCUcCUUGAAAAUUUGCAG 5.9% 9660 4538 AAUGGGaGUaCAGAUGCAA 0.1%
9610 4533 UCUUaUUGAAAAUUUGCAG 1.7% 9661 4538 AAUGGGaGUaCAGAUGCAg 1.9%
9611 4533 UCUUCUcGAAAAUUUGCAG 0.1% 9662 4538 gAUGGGaGUGCAaAUGCAA 0.1%
表20-6.从表1-8所列甲型流感片段8(NS1&NS2)序列得到的保守和小变体19-mer序列。保守序列匹配所列病毒序列的至少89%,变体含有从参考序列的3个或更少核苷酸变化。
Seq Ref %总数 9703 5026 AUGGAAUGAUAAnACAGUU 0.1%
ID ID 匹配序列 9704 5026 AUGGAgUGAUAACACuGUU 0.1%
5021 502U AUAACACAGUUCGAGUCUC 98.2% 5027 5027 AAUGGAAUGAUAACACAGU 97.9%
9663 5021 gUAACACgGUUCGAGUCUC 0.4% 9705 5027 AAUGGAgUGAUAACACAGU 0.1%
9664 5021 AUAACACAGcUCGAGUCUC 0.1% 9706 5027 AgUGGAAUGAUAACACAGU 0.2%
9665 5021 AUAACACAGUUaGAGUCUC 0.1% 9707 5027 AAUGGAAUGgUAACACgGU 0.4%
9666 5021 AUAACACAGUUCaAGUCUC 0.2% 9708 5027 AAUGGAAUaAUAACACAGU 1.1%
9667 5021 AUAACACAGUUCGAGUCaC 0.6% 9709 5027 AAUGGAAUGAUAACACAGc 0.1%
9668 5021 AUAACACuGUUCGAGUCUC 0.1% 9710 5027 AAUGGAAUGAUAAnACAGU 0.1%
9669 5021 AUAAnACAGUUCGAGUCUC 0.1% 9711 5027 AAUGGAgUGAUAACACUGU 0.1%
9670 5021 AUAACACAGUUCaAGUCaC 0.2% 5028 5028 UUGAAUGGAAUGAUAACAC 97.8%
5022 5022 UAACACAGUUCGAGUCUCU 98.2% 9712 5028 UUGAAUGGAAUGgUAACAC 0.4%
9671 5022 UAACACgGUUCGAGUCUCU 0.4% 9713 5028 UUGAAUGGAgUGAUAACAC 0.2%
9672 5022 UAACACAGcUCGAGUCUCU 0.1% 9714 5028 UUGAgUGGAAUGAUAACAC 0.2%
9673 5022 UAACACAGUUaGAGUCUCU 0.1% 9715 5028 nUGAAUGGAAUGAUAACAC 0.2%
9674 5022 UAACACAGUUCaAGUCUCU 0.2% 9716 5028 UUGAAUGGAAUaAUAACAC 1.1%
9675 5022 UAACACAGUUCGAGUCaCU 0.6% 9717 5028 UUGAAUGGAAUGAUAAnAC 0.1%
9676 5022 UAACACuGUUCGAGUCUCU 0.1% 5029 5029 UGAUAACACAGUUCGAGUC 97.7%
9677 5022 UAAnACAGUUCGAGUCUCU 0.1% 9718 5029 UGgUAACACgGUUCGAGUC 0.4%
9678 5022 UAACACAGUUCaAGUCaCU 0.2% 9719 5029 UaAUAACACAGUUCGAGUC 1.1%
5023 5023 UGAAUGGAAUGAUAACACA 98.0% 9720 5029 UGAUAACACAGcUCGAGUC 0.1%
9679 5023 UGAAUGGAgUGAUAACACA 0.1% 9721 5029 UGAUAACACAGUUaGAGUC 0.1%
9680 5023 UGAgUGGAAUGAUAACACA 0.2% 9722 5029 UGAUAACACAGUUCaAGUC 0.4%
9681 5023 UGAAUGGAAUGgUAACACg 0.4% 9723 5029 UGAUAACACuGUUCGAGUC 0.1%
9682 5023 UGAAUGGAAUaAUAACACA 1.1% 9724 5029 UGAUAAnACAGUUCGAGUC 0.1%
9683 5023 UGAAUGGAAUGAUAAnACA 0.1% 5030 5030 AUGAUAACACAGUUCGAGU 97.6%
9684 5023 UGAAUGGAgUGAUAACACu 0.1% 9725 5030 gUGAUAACACAGUUCGAGU 0.1%
5024 5024 GAAUGGAAUGAUAACACAG 98.0% 9726 5030 AUGgUAACACgGUUCGAGU 0.4%
9685 5024 GAAUGGAgUGAUAACACAG 0.1% 9727 5030 AUaAUAACACAGUUCGAGU 1.1%
9686 5024 GAgUGGAAUGAUAACACAG 0.2% 9728 5030 AUGAUAACACAGcUCGAGU 0.1%
9687 5024 GAAUGGAAUGgUAACACgG 0.4% 9729 5030 AUGAUAACACAGUUaGAGU 0.1%
9688 5024 GAAUGGAAUaAUAACACAG 1.1% 9730 5030 AUGAUAACACAGUUCaAGU 0.4%
9689 5024 GAAUGGAAUGAUAAnACAG 0.1% 9731 5030 AUGAUAAnACAGUUCGAGU 0.1%
9690 5024 GAAUGGAgUGAUAACACuG 0.1% 9732 5030 gUGAUAACACuGUUCGAGU 0.1%
5025 5025 UGGAAUGAUAACACAGUUC 98.0% 5031 5031 GGAAUGAUAACACAGUUCG 97.6%
9691 5025 UGGAgUGAUAACACAGUUC 0.1% 9733 5031 GGAgUGAUAACACAGUUCG 0.1%
9692 5025 UGGAAUGgUAACACgGUUC 0.4% 9734 5031 GGAAUGgUAACACgGUUCG 0.4%
9693 5025 UGGAAUaAUAACACAGUUC 1.1% 9735 5031 GGAAUaAUAACACAGUUCG 1.1%
9694 5025 UGGAAUGAUAACACAGcUC 0.1% 9736 5031 GGAAUGAUAACACAGcUCG 0.1%
9695 5025 UGGAAUGAUAACACAGUUa 0.1% 9737 5031 GGAAUGAUAACACAGUUaG 0.1%
9696 5025 UGGAAUGAUAAnACAGUUC 0.1% 9738 5031 GGAAUGAUAACACAGUUCa 0.4%
9697 5025 UGGAgUGAUAACACuGUUC 0.1% 9739 5031 GGAAUGAUAAnACAGUUCG 0.1%
5026 5026 AUGGAAUGAUAACACAGUU 97.9% 9740 5031 GGAgUGAUAACACuGUUCG 0.1%
9698 5026 AUGGAgUGAUAACACAGUU 0.1% 5032 5032 GAAUGAUAACACAGUUCGA 97.6%
9699 5026 gUGGAAUGAUAACACAGUU 0.2% 9741 5032 GAgUGAUAACACAGUUCGA 0.1%
9700 5026 AUGGAAUGgUAACACgGUU 0.4% 9742 5032 GAAUGgUAACACgGUUCGA 0.4%
9701 5026 AUGGAAUaAUAACACAGUU 1.1% 9743 5032 GAAUaAUAACACAGUUCGA 1.1%
9702 5026 AUGGAAUGAUAACACAGcU 0.1% 9744 5032 GAAUGAUAACACAGcUCGA 0.1%
9745 5032 GAAUGAUAACACAGUUaGA 0.1% 9792 5039 GAGaAUGUCAAAAAUGCAA 0.1%
9746 5032 GAAUGAUAACACAGUUCaA 0.4% 9793 5039 GAGGAUGUCAAAAuUGCAA 0.5%
9747 5032 GAAUGAUAAnACAGUUCGA 0.1% 5040 5040 GAUGUCAAAAAUGCAAUUG 96.8%
9748 5032 GAgUGAUAACACuGUUCGA 0.1% 9794 5040 GAUGUCAAAAAUGCAgUUG 1.5%
5033 5033 AAUGAUAACACAGUUCGAG 97.6% 9795 5040 GAUGUCAAAAAUGCgAUUG 1.0%
9749 5033 AgUGAUAACACAGUUCGAG 0.1% 9796 5040 GAUGUCAAAgAUGCAAUUG 0.1%
9750 5033 AAUGgUAACACgGUUCGAG 0.4% 9797 5040 aAUGUCAAAAAUGCAAUUG 0.1%
9751 5033 AAUaAUAACACAGUUCGAG 1.1% 9798 5040 GAUGUCAAAAAUGCAAUUa 0.1%
9752 5033 AAUGAUAACACAGcUCGAG 0.1% 9799 5040 GAUGUCAAAAuUGCAAUUG 0.5%
9753 5033 AAUGAUAACACAGUUaGAG 0.1% 5041 5041 UGAGGAUGUCAAAAAUGCA 96.4%
9754 5033 AAUGAUAACACAGUUCaAG 0.4% 9800 5041 UGAGGAUGUCAAAAAUGCg 1.0%
9755 5033 AAUGAUAAnACAGUUCGAG 0.1% 9801 5041 UGAGGAUGUCAAAgAUGCA 0.1%
9756 5033 AgUGAUAACACuGUUCGAG 0.1% 9802 5041 aGAGGAUGUCAAAAAUGCA 1.5%
5034 5034 CUUGAAUGGAAUGAUAACA 97.5% 9803 5041 cGAGGAUGUCAAAAAUGCA 0.4%
9757 5034 CUUGAAUGGAAUGgUAACA 0.4% 9804 5041 UaAGGAUGUCAAAAAUGCA 0.1%
9758 5034 CUUGAAUGGAgUGAUAACA 0.2% 9805 5041 UGAGaAUGUCAAAAAUGCA 0.1%
9759 5034 CUUGAgUGGAAUGAUAACA 0.2% 9806 5041 UGAGGAUGUCAAAAuUGCA 0.5%
9760 5034 uUUGAAUGGAAUGAUAACA 0.3% 5042 5042 CGGCUUCGCCGAGAUCAGA 96.2%
9761 5034 CUUGAAUGGAAUaAUAACA 1.1% 9807 5042 CGGCUUCGCCGgGAUCAGA 0.5%
9762 5034 CUUGAAUGGAAUGAUAAnA 0.1% 9808 5042 aGGCUUCGCCGAGAUCAGA 0.1%
9763 5034 nnUGAAUGGAAUGAUAACA 0.2% 9809 5042 CGaCUUCGCCGAGAUCAGA 0.8%
5035 5035 GAUAACACAGUUCGAGUCU 97.1% 9810 5042 CGGaUUCGCCGAGAUCAGA 0.1%
9764 5035 Gg0AACACgGUUCGAGUCU 0.4% 9811 5042 CGGCUcCGCCGAGAUCAGA 0.3%
9765 5035 aAUAACACAGUUCGAGUCU 1.1% 9812 5042 CGGCUUCaCCGAGAUCAGA 0.1%
9766 5035 GA0AACACAGCUCGAGUCU 0.1% 9813 5042 CGGCUUCGCaGAGAUCAGA 0.1%
9767 5035 GAUAACACAGUUaGAGUCU 0.1% 9814 5042 CGGCUUCGCCGAGAcCAGA 0.3%
9768 5035 GAUAACACAGUUCaAGUCU 0.2% 9815 5042 CGGCUUCGCCGAGAUaAGA 0.1%
9769 5035 GAUAACACAGUUCGAGUCa 0.6% 9816 5042 CGGCUUCGCCGAGAUCAaA 0.4%
9770 5035 GAUAACACuGUUCGAGUCU 0.1% 9817 5042 CGGCUUCGCCGAuAUCAGA 0.2%
9771 5035 GAUAAnACAGUUCGAGUCU 0.1% 9818 5042 CGGgUUuGCCGAGAUCAGA 0.1%
9772 5035 GAUAACACAGUUCaAGUCa 0.2% 9819 5042 aGaCUUCGCCGAGAUCAGA 0.1%
5036 5036 AUGUCAAAAAUGCAAUUGG 96.9% 9820 5042 CGaCUUCGCaGAGAUCAGA 0.1%
9773 5036 AUGUCAAAAAUGCAgUUGG 1.5% 9821 5042 CGGCUcCGCCGAGAUCAaA 0.3%
9774 5036 AUGUCAAAAAUGCgAUUGG 1.0% 9822 5042 CGGCUUCGCCGAnnUCAGA 0.1%
9775 5036 AUGUCAAAgAUGCAAUUGG 0.1% 5043 5043 UGUCAAAAAUGCAAUUGGG 95.6%
9776 5036 AUGUCAAAAAUGCAAUUaG 0.1% 9823 5043 UGUCAAAAAUGCAgUUGGG 1.0%
9777 5036 AUGUCAAAAuUGCAAUUGG 0.5% 9824 5043 UGUCAAAAAUGCgAUUGGG 1.0%
5037 5037 GGAUGUCAAAAAUGCAAUU 96.9% 9825 5043 UGUCAAAgAUGCAAUUGGG 0.1%
9778 5037 GGAUGUCAAAAAUGCAgUU 1.5% 9826 5043 UGUCAAAAAUGCAAUUaGG 0.1%
9779 5037 GGAUGUCAAAAAUGCgAUU 1.0% 9827 5043 UGUCAAAAAUGCAAUUGGa 0.1%
9780 5037 GGAUGUCAAAgAUGCAAUU 0.1% 9828 5043 UGUCAAAAAUGCAAUUGGc 1.2%
9781 5037 GaAUGUCAAAAAUGCAAUU 0.1% 9829 5043 UGUCAAAAuUGCAAUUGGG 0.5%
9782 5037 GGAUGUCAAAAuUGCAAUU 0.5% 9830 5043 UGUCAAAAAUGCAgUUGGa 0.5%
5038 5038 AGGAUGUCAAAAAUGCAAU 96.9% 5044 5044 UCUACAGAGAUUCGCUUGG 95.5%
9783 5038 AGGAUGUCAAAAAUGCAgU 1.5% 9831 5044 UCUACAGAGAUUuGCUUGG 0.2%
9784 5038 AGGAUGUCAAAAAUGCgAU 1.0% 9832 5044 UaUACAGAGAUUCGCUUGG 1.3%
9785 5038 AGGAUGUCAAAgAUGCAAU 0.1% 9833 5044 UCUACAGAaAUUCGCUUGG 0.1%
9786 5038 AGaAUGUCAAAAAUGCAAU 0.1% 9834 5044 UCUACAGAGAUUCaCUUGG 2.6%
9787 5038 AGGAUGUCAAAAuUGCAAU 0.5% 9835 5044 UCUACAGAGAUUCGCUUGa 0.2%
5039 5039 GAGGAUGUCAAAAAUGCAA 96.8% 9836 5044 UCUACAGAGAUUCGCUUnG 0.1%
9788 5039 GAGGAUGUCAAAAAUGCAg 1.5% 9837 5044 UCUACAGAGAUUCuCUUGG 0.1%
9789 5039 GAGGAUGUCAAAAAUGCgA 1.0% 5045 5045 GCAAUUGGGGUCCUCAUCG 94.8%
9790 5039 GAGGAUGUCAAAgAUGCAA 0.1% 9838 5045 GCAAUUGGGGUCCUCgUCG 0.1%
9791 5039 aAGGAUGUCAAAAAUGCAA 0.1% 9839 5045 GCAAUUGGGGUuCUCAUCG 0.1%
9840 5045 GCAgUUGGGGUCCUCAUCG 1.0% 9889 5050 AAAAAUGCAAUUGGGGUuC 0.1%
9841 5045 GCgAUUGGGGUCCUCAUCG 1.0% 9890 5050 AAAAAUGCAgUUGGGGUCC 1.0%
9842 5045 GCAAUUaGGGUCCUCAUCG 0.1% 9891 5050 AAAAAUGCgAUUGGGGUCC 1.0%
9843 5045 GCAAUUGGaGUCCUCAUCG 0.1% 9892 5050 AAAgAUGCAAUUGGGGUCC 0.1%
9844 5045 GCAAUUGGcGUCCUCAUCG 1.2% 9893 5050 AAAAAUGCAAUUaGGGUCC 0.1%
9845 5045 GCAAUUGGGaUCCUCAUCG 1.0% 9894 5050 AAAAAUGCAAUUGGaGUCC 0.1%
9846 5045 GCAAUUGGGcUCCUCAUCG 0.1% 9895 5050 AAAAAUGCAAUUGGcGUCC 1.2%
9847 5045 GCAgUUGGaGUCCUCAUCG 0.5% 9896 5050 AAAAAUGCAAUUGGGaUCC 1.1%
9848 5045 GCAAUUGGGaUCCUCAUCa 0.1% 9897 5050 AAAAAUGCAAUUGGGcUCC 0.1%
5046 5046 CAAUUGGGGUCCUCAUCGG 94.8% 9898 5050 AAAAuUGCAAUUGGGGUCC 0.5%
9849 5046 CAAUUGGGGUCCUCgUCGG 0.1% 9899 5050 AAAAAUGCAgUUGGaGUCC 0.5%
9850 5046 CAAUUGGGGUuCUCAUCGG 0.1% 5051 5051 AAAAUGCAAUUGGGGUCCU 94.3%
9851 5046 CAgUUGGGGUCCUCAUCGG 1.0% 9900 5051 AAAAUGCAAUUGGGGUuCU 0.1%
9852 5046 CgAUUGGGGUCCUCAUCGG 1.0% 9901 5051 AAAAUGCAgUUGGGGUCCU 1.0%
9853 5046 CAAUUaGGGUCCUCAUCGG 0.1% 9902 5051 AAAAUGCgAUUGGGGUCCU 1.0%
9854 5046 CAAUUGGaGUCCUCAUCGG 0.1% 9903 5051 AAgAUGCAAUUGGGGUCCU 0.1%
9855 5046 CAAUUGGcGUCCUCAUCGG 1.2% 9904 5051 AAAAUGCAAUUaGGGUCCU 0.1%
9856 5046 CAAUUGGGaUCCUCAUCGG 1.0% 9905 5051 AAAAUGCAAUUGGaGUCCU 0.1%
9857 5046 CAAUUGGGcUCCUCAUCGG 0.1% 9906 5051 AAAAUGCAAUUGGcGUCCU 1.2%
9858 5046 CAgUUGGaGUCCUCAUCGG 0.5% 9907 5051 AAAAUGCAAUUGGGaUCCU 1.1%
5047 5047 UGCAAUUGGGGUCCUCAUC 94.8% 9908 5051 AAAAUGCAAUUGGGcUCCU 0.1%
9859 5047 UGCAAUUGGGGUCCUCgUC 0.1% 9909 5051 AAAuUGCAAUUGGGGUCCU 0.5%
9860 5047 UGCAAUUGGGGUuCUCAUC 0.1% 9910 5051 AAAAUGCAgUUGGaGUCCU 0.5%
9861 5047 UGCAgUUGGGGUCCUCAUC 1.0% 5052 5052 AUGCAAUUGGGGUCCUCAU 94.3%
9862 5047 UGCgAUUGGGGUCCUCAUC 1.0% 9911 5052 AUGCAAUUGGGGUCCUCgU 0.1%
9863 5047 UGCAAUUaGGGUCCUCAUC 0.1% 9912 5052 AUGCAAUUGGGGUuCUCAU 0.1%
9864 5047 UGCAAUUGGaGUCCUCAUC 0.1% 9913 5052 AUGCAgUUGGGGUCCUCAU 1.0%
9865 5047 UGCAAUUGGcGUCCUCAUC 1.2% 9914 5052 AUGCgAUUGGGGUCCUCAU 1.0%
9866 5047 UGCAAUUGGGaUCCUCAUC 1.1% 9915 5052 AUGCAAUUaGGGUCCUCAU 0.1%
9867 5047 UGCAAUUGGGcUCCUCAUC 0.1% 9916 5052 AUGCAAUUGGaGUCCUCAU 0.1%
9868 5047 UGCAgUUGGaGUCCUCAUC 0.5% 9917 5052 AUGCAAUUGGcGUCCUCAU 1.2%
5048 5048 UCAAAAAUGCAAUUGGGGU 94.4% 9918 5052 AUGCAAUUGGGaUCCUCAU 1.1%
9869 5048 UCAAAAAUGCAgUUGGGGU 1.0% 9919 5052 AUGCAAUUGGGcUCCUCAU 0.1%
9870 5048 UCAAAAAUGCgAUUGGGGU 1.0% 9920 5052 uUGCAAUUGGGGUCCUCAU 0.5%
9871 5048 UCAAAgAUGCAAUUGGGGU 0.1% 9921 5052 AUGCAgUUGGaGUCCUCAU 0.5%
9872 5048 UCAAAAAUGCAAUUaGGGU 0.1% 5053 5053 CAAAAAUGCAAUUGGGGUC 94.3%
9873 5048 UCAAAAAUGCAAUUGGaGU 0.1% 9922 5053 CAAAAAUGCAAUUGGGGUu 0.1%
9874 5048 UCAAAAAUGCAAUUGGcGU 1.2% 9923 5053 CAAAAAUGCAgUUGGGGUC 1.0%
9875 5048 UCAAAAAUGCAAUUGGGaU 1.1% 9924 5053 CAAAAAUGCgAUUGGGGUC 1.0%
9876 5048 UCAAAAAUGCAAUUGGGcU 0.1% 9925 5053 CAAAgAUGCAAUUGGGGUC 0.1%
9877 5048 UCAAAAuUGCAAUUGGGGU 0.5% 9926 5053 CAAAAAUGCAAUUaGGGUC 0.1%
9878 5048 UCAAAAAUGCAgUUGGaGU 0.5% 9927 5053 CAAAAAUGCAAUUGGaGUC 0.1%
5049 5049 GUCAAAAAUGCAAUUGGGG 94.4% 9928 5053 CAAAAAUGCAAUUGGcGUC 1.2%
9879 5049 GUCAAAAAUGCAgUUGGGG 1.0% 9929 5053 CAAAAAUGCAAUUGGGaUC 1.1%
9880 5049 GUCAAAAAUGCgAUUGGGG 1.0% 9930 5053 CAAAAAUGCAAUUGGGcUC 0.1%
9881 5049 GUCAAAgAUGCAAUUGGGG 0.1% 9931 5053 CAAAAuUGCAAUUGGGGUC 0.5%
9882 5049 GUCAAAAAUGCAAUUaGGG 0.1% 9932 5053 CAAAAAUGCAgUUGGaGUC 0.5%
9883 5049 GUCAAAAAU AAUUGGaG 0.1% 5054 5054 AAAUGCAAUUGGGGUCCUC 94.3%
9884 5049 GUCAAAAAUGCAAUUGGcG 1.2% 9933 5054 AAAUGCAAUUGGGGUuCUC 0.1%
9885 5049 GUCAAAAAUGCAAUUGGGa 1.1% 9934 5054 AAAUGCAgUUGGGGUCCUC 1.0%
9886 5049 GUCAAAAAUGCAAUUGGGc 0.1% 9935 5054 AAAUGCgAUUGGGGUCCUC 1.0%
9887 5049 GUCAAAAuUGCAAUUGGGG 0.5% 9936 5054 AgAUGCAAUUGGGGUCCUC 0.1%
9888 5049 GUCAAAAAUGCAgUUGGaG 0.5% 9937 5054 AAAUGCAAUUaGGGUCCUC 0.1%
5050 5050 AAAAAUGCAAUUGGGGUCC 94.3% 9938 5054 AAAUGCAAUUGGaGUCCUC 0.1%
9939 5054 AAAUGCAAUUGGcGUCCUC 1.2% 9989 5058 CUUGAUCGGaUUCGCCGAG 0.1%
9940 5054 AAAUGCAAUUGGGaUCCUC 1.1% 9990 5058 CUUGAUCGGCUcCGCCGAG 0.7%
9941 5054 AAAUGCAAUUGGGcUCCUC 0.1% 9991 5058 CUUGAUCGGCUUCaCCGAG 0.1%
9942 5054 AAuUGCAAUUGGGGUCCUC 0.5% 9992 5058 CUUGAUCGGCUUCGCaGAG 0.1%
9943 5054 AAAUGCAgUUGGaGUCCUC 0.5% 9992 5058 CUUGAUCGGCUUCGCCGAn 0.1%
5055 5055 AAUGCAAUUGGGGUCCUCA 94.2% 9994 5058 CUUGAUCGGCUUCGCCGAu 0.2%
9944 5055 AAUGCAAUUGGGGUCCUCg 0.1% 9995 5058 CUUGAUaGaCUUCGCCGAG 0.1%
9945 5055 AAUGCAAUUGGGGUuCUCA 0.1% 9996 5058 CUUGAUCGaCUUCGCaGAG 0.1%
9946 5055 AAUGCAgUUGGGGUCCUCA 1.0% 9997 5058 CUaGAcCGGCUUCGCCGgG 0.2%
9947 5055 AAUGCgAUUGGGGUCCUCA 1.0% 9998 5058 CUUGAcCGGgUUuGCCGAG 0.1%
9948 5055 gAUGCAAUUGGGGUCCUCA 0.1% 5059 5059 GAAAGCGAAUUUCAGUGUG 93.6%
9949 5055 AAUGCAAUUaGGGUCCUCA 0.1% 9999 5059 GAAgGCGAAUUUCAGUGUG 0.1%
9950 5055 AAUGCAAUUGGaGUCCUCA 0.1% 10000 5059 GAgAGCGAAUUUCAGUGUG 0.1%
9951 5055 AAUGCAAUUGGcGUCCUCA 1.2% 10001 5059 aAAAGCGAAUUUCAGUGUG 0.2%
9952 5055 AAUGCAAUUGGGaUCCUCA 1.1% 10002 5059 GAAAGCaAAUUUCAGUGUG 0.3%
9953 5055 AAUGCAAUUGGGcUCCUCA 0.1% 10003 5059 GAAAGCGAAcUUCAGUGUG 1.3%
9954 5055 AuUGCAAUUGGGGUCCUCA 0.5% 10004 5059 GAAAGCGAAUaUCAGUGUG 0.1%
9955 5055 AAUGCAgUUGGaGUCCUCA 0.5% 10005 5059 GAAAGCGAAUUUCAGcGUG 0.2%
5056 5056 UGAAAGCGAAUUUCAGUGU 93.8% 10006 5059 GAAAGCGAAUUUCAGUGUa 0.2%
9956 5056 UGAAgGCGAAUUUCAGUGU 0.1% 10007 5059 GAAAGCuAAUUUCAGUGUG 0.4%
9957 5056 UGAgAGCGAAUUUCAGUGU 0.1% 10008 5059 uAAAGCGAAUUUCAGUGUG 0.1%
9958 5056 UaAAAGCGAAUUUCAGUGU 0.2% 10009 5059 aAAAGCGAAcUUCAGUGUG 0.3%
9959 5056 UGAAAGCaAAUUUCAGUGU 0.3% 10010 5059 GAAAGCaAAcUUCAGUGUG 0.9%
9960 5056 UGAAAGCGAAcUUCAGUGU 1.3% 10011 5059 GAAAGCaAAcUUuAGUGUG 2.2%
9961 5056 UGAAAGCGAAUaUCAGUGU 0.1% 5060 5060 AUCGGCUUCGCCGAGAUCA 93.4%
9962 5056 UGAAAGCGAAUUUCAGcGU 0.2% 10012 5060 AUCGGCUUCGCCGgGAUCA 0.3%
9963 5056 UGAAAGCuAAUUUCAGUGU 0.4% 10013 5060 AcCGGCUUCGCCGAGAUCA 3.1%
9964 5056 UuAAAGCGAAUUUCAGUGU 0.1% 10014 5060 AUaGGCUUCGCCGAGAUCA 0.1%
9965 5056 UaAAAGCGAAcUUCAGUGU 0.3% 10015 5060 AUCGaCUUCGCCGAGAUCA 0.8%
9966 5056 UGAAAGCaAAcUUCAGUGU 0.9% 10016 5060 AUCGGaUUCGCCGAGAUCA 0.1%
9967 5056 UGAAAGCaAAcUUuAGUGU 2.2% 10017 5060 AUCGGCUcCGCCGAGAUCA 0.6%
5057 5057 UUGAUCGGCUUCGCCGAGA 93.7% 10018 5060 AUCGGCUUCaCCGAGAUCA 0.1%
9968 5057 UUGAUCGGCUUCGCCGgGA 0.3% 10019 5060 AUCGGCUUCGCaGAGAUCA 0.1%
9969 5057 UcGAUCGGCUUCGCCGAGA 0.1% 10020 5060 AUCGGCUUCGCCGAGAcCA 0.3%
9970 5057 UUGAcCGGCUUCGCCGAGA 3.1% 10021 5060 AUCGGCUUCGCCGAGAUaA 0.1%
9971 5057 UUGAUaGGCUUCGCCGAGA 0.1% 10022 5060 AUCGGCUUCGCCGAuAUCA 0.2%
9972 5057 UUGAUCGaCUUCGCCGAGA 0.8% 10023 5060 AcCGGCUUCGCCGgGAUCA 0.2%
9973 5057 UUGAUCGGaUUCGCCGAGA 0.1% 10024 5060 AUaGaCUUCGCCGAGAUCA 0.1%
9974 5057 UUGAUCGGCUcCGCCGAGA 0.7% 10025 5060 AUCGaCUUCGCaGAGAUCA 0.1%
9975 5057 UUGAUCGGCUUCaCCGAGA 0.1% 10026 5060 AUCGGCUcCGCCGAGAUCu 0.1%
9976 5057 UUGAUCGGCUUCGCaGAGA 0.1% 10027 5060 AUCGGCUUCGCCGAnnUCA 0.1%
9977 5057 UUGAUCGGCUUCGCCGAuA 0.2% 10028 5060 AcCGGgUUuGCCGAGAUCA 0.1%
9978 5057 UUGAUaGaCUUCGCCGAGA 0.1% 5061 5061 GAUCGGCUUCGCCGAGAUC 93.4%
9979 5057 UUGAUCGaCUUCGCaGAGA 0.1% 10029 5061 GAUCGGCUUCGCCGgGAUC 0.3%
9980 5057 UUGAUCGGCUUCGCCGAnn 0.1% 10030 5061 GAcCGGCUUCGCCGAGAUC 3.1%
9981 5057 UaGAcCGGCUUCGCCGgGA 0.2% 10031 5061 GAUaGGCUUCGCCGAGAUC 0.1%
9982 5057 UUGAcCGGgUUuGCCGAGA 0.1% 10032 5061 GAUCGaCUUCGCCGAGAUC 0.8%
5058 5058 CUUGAUCGGCUUCGCCGAG 93.6% 10033 5061 GAUCGGaUUCGCCGAGAUC 0.1%
9983 5058 CUUGAUCGGCUUCGCCGgG 0.3% 10034 5061 GAUCGGCUcCGCCGAGAUC 0.7%
9984 5058 aUUGAUCGGCUUCGCCGAG 0.1% 10035 5061 GAUCGGCUUCaCCGAGAUC 0.1%
9985 5058 CUcGAUCGGCUUCGCCGAG 0.1% 10036 5061 GAUCGGCUUCGCaGAGAUC 0.1%
9986 5058 CUUGAcCGGCUUCGCCGAG 3.1% 10037 5061 GAUCGGCUUCGCCGAGAcC 0.3%
9987 5058 CUUGAUaGGCUUCGCCGAG 0.1% 10038 5061 GAUCGGCUUCGCCGAGAUa 0.1%
9988 5058 CUUGAUCGaCUUCGCCGAG 0.8% 10039 5061 GAUCGGCUUCGCCGAuAUC 0.2%
10040 5061 GAcCGGCUUCGCCGgGAUC 0.2% 10091 5064 GcGCAAUUGUUGGCGAAAU 0.6%
10041 5061 GAUaGaCUUCGCCGAGAUC 0.1% 10092 5064 GAaCAAUUGUUGGuGAAAU 0.1%
10042 5061 GAUCGaCUUCGCaGAGAUC 0.1% 10093 5064 GgaCAAUUGUUGGCGAAAU 0.2%
10043 5061 GAUCGGCUUCGCCGAnnUC 0.1% 10094 5064 GgGCAAUUGUaGGCGAAAU 0.1%
10044 5061 GAcCGGgUUuGCCGAGAUC 0.1% 10095 5064 GAcgAAUUGUUGGCGAAAU 0.1%
5062 5062 UGAUCGGCUUCGCCGAGAU 93.4% 10096 5064 GAGCAAUaGUgGGCGAAAU 1.6%
10045 5062 UGAUCGGCUUCGCCGgGAU 0.3% 10097 5064 GAGCAAUcGUUGGaGAAAU 0.3%
10046 5062 cGAUCGGCUUCGCCGAGAU 0.1% 10098 5064 GAGCAAUcGUUGGaGAgAU 0.1%
10047 5062 UGAcCGGCUUCGCCGAGAU 3.1% 5065 5065 GGAGCAAUUGUUGGCGAAA 92.8%
10048 5062 UGAUaGGCUUCGCCGAGAU 0.1% 10099 5065 GGAGCAAUUGUUGGuGAAA 0.1%
10049 5062 UGAUCGaCUUCGCCGAGAU 0.8% 10100 5065 GGAGCAgUUGUUGGCGAAA 0.2%
10050 5062 UGAUCGGaUUCGCCGAGAU 0.1% 10101 5065 GGAGuAAUUGUUGGCGAAA 0.7%
10051 5062 UGAUCGGCUcCGCCGAGAU 0.7% 10102 5065 GGgGCAAUUGUUGGCGAAA 0.7%
10052 5062 UGAUCGGCUUCaCCGAGAU 0.1% 10103 5065 GGgGCAAUUGUUGGCGAgA 0.1%
10053 5062 UGAUCGGCUUCGCaGAGAU 0.1% 10104 5065 GaAGCAAUUGUUGGCGAAA 0.1%
10054 5062 UGAUCGGCUUCGCCGAGAc 0.3% 10105 5065 GGAaCAAUUGUUGGCGAAA 0.3%
10055 5062 UGAUCGGCUUCGCCGAuAU 0.2% 10106 5065 GGAGCAAUUaUUGGCGAAA 0.1%
10056 5062 UGAUaGaCUUCGCCGAGAU 0.1% 10107 5065 GGAGCAAUUGUaGGCGAAA 0.1%
10057 5062 UGAUCGaCUUCGCaGAGAU 0.1% 10108 5065 GGAGCAAUUGUgGGCGAAA 0.1%
10058 5062 UGAUCGGCUUCGCCGAnnU 0.1% 10109 5065 GGAGCAAUUGUUGcCGAAA 0.1%
10059 5062 aGAcCGGCUUCGCCGgGAU 0.2% 10110 5065 GGcGCAAUUGUUGGCGAAA 0.6%
10060 5062 UGAcCGGgUUuGCCGAGAU 0.1% 10111 5065 GGAaCAAUUGUUGGuGAAA 0.1%
5063 5063 UCGGCUUCGCCGAGAUCAG 93.2% 10112 5065 GGgaCAAUUGUUGGCGAAA 0.2%
10061 5063 UCGGCUUCGCCGgGAUCAG 0.3% 10113 5065 GGgGCAAUUGUaGGCGAAA 0.1%
10062 5063 cCGGCUUCGCCGAGAUCAG 2.9% 10114 5065 GGAcgAAUUGUUGGCGAAA 0.1%
10063 5063 UaGGCUUCGCCGAGAUCAG 0.1% 10115 5065 GGAGCAAUaGUgGGCGAAA 1.6%
10064 5063 UCGaCUUCGCCGAGAUCAG 0.8% 10116 5065 GGAGCAAUcGUUGGaGAAA 0.3%
10065 5063 UCGGaUUCGCCGAGAUCAG 0.1% 10117 5065 GGAGCAAUcGUUGGaGAgA 0.1%
10066 5063 UCGGCUcCGCCGAGAUCAG 0.3% 5066 5066 UUCCUUGAUCGGCUUCGCC 92.7%
10067 5063 UCGGCUUCaCCGAGAUCAG 0.1% 10118 5066 UUuCUUGAUCGGCUUCGCC 1.5%
10068 5063 UCGGCUUCGCaGAGAUCAG 0.1% 10119 5066 UUCaUUGAUCGGCUUCGCC 0.1%
10069 5063 UCGGCUUCGCCGAGAcCAG 0.3% 10120 5066 UUCCUUGAcCGGCUUCGCC 3.1%
10070 5063 UCGGCUUCGCCGAGAUaAG 0.1% 10121 5066 UUCCUUGAUaGGCUUCGCC 0.1%
10071 5063 UCGGCUUCGCCGAGAUCAa 0.2% 10122 5066 UUCCUUGAUCGaCUUCGCC 0.8%
10072 5063 UCGGCUUCGCCGAuAUCAG 0.2% 10123 5066 UUCCUUGAUCGGaUUCGCC 0.1%
10073 5063 cCGGCUUCGCCGgGAUCAG 0.2% 10124 5066 UUCCUUGAUCGGCUcCGCC 0.7%
10074 5063 cCGGCUUCGCCGAGAUCAa 0.2% 10125 5066 UUCCUUGAUCGGCUUCaCC 0.1%
10075 5063 UaGaCUUCGCCGAGAUCAG 0.1% 10126 5066 UUCCUUGAUCGGCUUCGCa 0.1%
10076 5063 UCGaCUUCGCaGAGAUCAG 0.1% 10127 5066 UUuCUcGAUCGGCUUCGCC 0.1%
10077 5063 UCGGCUcCGCCGAGAUCAa 0.3% 10128 5066 UUCCUUGAUaGaCUUCGCC 0.1%
10078 5063 UCGGCUUCGCCGAnnUCAG 0.1% 10129 5066 UUCCUUGAcCGGgUUuGCC 0.1%
10079 5063 cCGGgUUuGCCGAGAUCAG 0.1% 10130 5066 UUuCUaGAcCGGCUUCGCC 0.2%
5064 5064 GAGCAAUUGUUGGCGAAAU 92.8% 5067 5067 UCCUUGAUCGGCUUCGCCG 92.7%
10080 5064 GAGCAAUUGUUGGUGAAAU 0.1% 10131 5067 UuCUUGAUCGGCUUCGCCG 1.5%
10081 5064 GAGCAgUUGUUGGCGAAAU 0.2% 10132 5067 UCaUUGAUCGGCUUCGCCG 0.1%
10082 5064 GAGuAAUUGUUGGCGAAAU 0.7% 10133 5067 UCCUUGAcCGGCUUCGCCG 3.1%
10083 5064 GgGCAAUUGUUGGCGAAAU 0.7% 10134 5067 UCCUUGAUaGGCUUCGCCG 0.1%
10084 5064 GgGCAAUUGUUGGCGAgAU 0.1% 10135 5067 UCCUUGAUCGaCUUCGCCG 0.8%
10085 5064 aAGCAAUUGUUGGCGAAAU 0.1% 10136 5067 UCCUUGAUCGGaUUCGCCG 0.1%
10086 5064 GAaCAAUUGUUGGCGAAAU 0.3% 10137 5067 UCCUUGAUCGGCUcCGCCG 0.7%
10087 5064 GAGCAAUUaUUGGCGAAAU 0.1% 10138 5067 UCCUUGAUCGGCUUCaCCG 0.1%
10088 5064 GAGCAAUUGUaGGCGAAAU 0.1% 10139 5067 UCCUUGAUCGGCUUCGCaG 0.1%
10089 5064 GAGCAAUUGUgGGCGAAAU 0.1% 10140 5067 UuCUcGAUCGGCUUCGCCG 0.1%
10090 5064 GAGCAAUUGUUGcCGAAAU 0.1% 10141 5067 UCCUUGAUaGaCUUCGCCG 0.1%
10142 5067 UCCUUGAcCGGgUUuGCCG 0.1% 10193 5070 CCUUGAUCGaCUUCGCaGA 0.1%
10143 5067 UuCUaGAcCGGCUUCGCCG 0.2% 10194 5070 CCUUGAcCGGgUUuGCCGA 0.1%
5068 5068 GGGAGCAAUUGUUGGCGAA 92.7% 5071 5071 GAGGGAGCAAUUGUUGGCG 92.3%
10144 5068 GGGAGCAAUUGUUGGuGAA 0.1% 10195 5071 GAGGGAGCAAUUGUUGGuG 0.1%
10145 5068 GGGAGCAgUUGUUGGCGAA 0.2% 10196 5071 GAGGGAGCAgUUGUUGGCG 0.2%
10146 5068 GGGAGuAAUUGUUGGCGAA 0.7% 10197 5071 GAGGGAGuAAUUGUUGGCG 0.7%
10147 5068 GGGgGCAAUUGUUGGCGAA 0.7% 10198 5071 GAGGGgGCAAUUGUUGGCG 0.8%
10148 5068 GGGgGCAAUUGUUGGCGAg 0.1% 10199 5071 aAGGGAGCAAUUGUUGGCG 0.2%
10149 5068 aGGAGCAAUUGUUGGCGAA 0.1% 10200 5071 GAaGGAGCAAUUGUUGGCG 0.1%
10150 5068 GGaAGCAAUUGUUGGCGAA 0.1% 10201 5071 GAGGaAGCAAUUGUUGGCG 0.1%
10151 5068 GGGAaCAAUUGUUGGCGAA 0.3% 10202 5071 GAGGGAaCAAUUGUUGGCG 0.3%
10152 5068 GGGAGCAAUUaUUGGCGAA 0.1% 10203 5071 GAGGGAGCAAUUaUUGGCG 0.1%
10153 5068 GGGAGCAAUUGUaGGCGAA 0.1% 10204 5071 GAGGGAGCAAUUGUaGGCG 0.1%
10154 5068 GGGAGCAAUUGUUGcCGAA 0.1% 10205 5071 GAGGGAGCAAUUGUUGcCG 0.1%
10155 5068 GGGcGCAAUUGUUGGCGAA 0.6% 10206 5071 GAGGGcGCAAUUGUUGGCG 0.6%
10156 5068 GGGAaCAAUUGUUGGuGAA 0.1% 10207 5071 GcGGGAGCAAUUGUUGGCG 0.2%
10157 5068 GGGgaCAAUUGUUGGCGAA 0.2% 10208 5071 GAGGGAaCAAUUGUUGGuG 0.1%
10158 5068 aGGAGCAAUUGUgGGCGAA 0.1% 10209 5071 GAGGGgaCAAUUGUUGGCG 0.2%
10159 5068 GGGAcgAAUUGUUGGCGAA 0.1% 10210 5071 GAaGGAGCAAUUGUgGGCG 0.1%
10160 5068 GGGAGCAAUcGUUGGaGAA 0.3% 10211 5071 GAGGAcgAAUUGUUGGCG 0.1%
10161 5068 aGGgGCAAUUGUaGGCGAA 0.1% 10212 5071 GAGGGAGCAAUcGUUGGaG 0.4%
10162 5068 GGGAGCAAUcGUUGGaGAg 0.1% 10213 5071 GAaGGgGCAAUUGUaGGCG 0.1%
5069 5069 AGGGAGCAAUUGUUGGCGA 92.5% 5072 5072 AGGGCUUUCACCGAAGAGG 92.3%
10163 5069 AGGGAGCAAUUGUUGGuGA 0.1% 10214 5072 AGGGCUUUCACCGAgGAGG 0.1%
10164 5069 AGGGAGCAgUUGUUGGCGA 0.2% 10215 5072 AGGGCUUUCACuGAAGAGG 0.3%
10165 5069 AGGGAGuAAUUGUUGGCGA 0.7% 10216 5072 AGGGCUUUCAuCGAAGAGG 0.1%
10166 5069 AGGGgGCAAUUGUUGGCGA 0.8% 10217 5072 AGGGCUUUuACCGAAGAGG 0.1%
10167 5069 AaGGAGCAAUUGUUGGCGA 0.1% 10218 5072 AGGGCUUUCACuGAgGAGG 0.1%
10168 5069 AGGaAGCAAUUGUUGGCGA 0.1% 10219 5072 AGaGCUUUCACCGAAGAGG 0.1%
10169 5069 AGGGAaCAAUUGUUGGCGA 0.3% 10220 5072 AGGGCcUUCACCGAAGAGG 0.7%
10170 5069 AGGGAGCAAUUaUUGGCGA 0.1% 10221 5072 AGGGCUaUCACCGAAGAGG 0.1%
10171 5069 AGGGAGCAAUUGUaGGCGA 0.1% 10222 5072 AGGGCUUUCACaGAAGAGG 0.1%
10172 5069 AGGGAGCAAUUGUUGcCGA 0.1% 10223 5072 AGGGCUUUCACCaAAGAGG 0.1%
10173 5069 AGGGcGCAAUUGUUGGCGA 0.6% 10224 5072 AGGGCUUUCACCGAAaAGG 0.2%
10174 5069 cGGGAGCAAUUGUUGGCGA 0.2% 10225 5072 AGGGCUUUCACCGAAGAaG 0.1%
10175 5069 AGGGAaCAAUUGUUGGuGA 0.1% 10226 5072 AGGGCUUUCACCGAAGcGG 0.2%
10176 5069 AGGGgaCAAUUGUUGGCGA 0.2% 10227 5072 AGGGgUUUCACCGAAGAGG 0.1%
10177 5069 AaGGAGCAAUUGUgGGCGA 0.1% 10228 5072 AGGGCcUUCACCGAgGAGG 2.0%
10178 5069 AGGGAcgAAUUGUUGGCGA 0.1% 5073 5073 GGGCUUUCACCGAAGAGGG 92.2%
10179 5069 AGGGAGCAAUcGUUGGaGA 0.4% 10229 5073 GGGCUUUCACCGAgGAGGG 0.1%
10180 5069 AaGGgGCAAUUGUaGGCGA 0.1% 10230 5073 GGGCUUUCACuGAAGAGGG 0.3%
5070 5070 CCUUGAUCGGCUUCGCCGA 92.4% 10231 5073 GGGCUUUCAuCGAAGAGGG 0.1%
10181 5070 CCUUGAUCGGCUUCGCCGg 0.3% 10232 5073 GGGCUUUuACCGAAGAGGG 0.1%
10182 5070 uCUUGAUCGGCUUCGCCGA 1.5% 10233 5073 GGGCUUUCACuGAgGAGGG 0.1%
10183 5070 CaUUGAUCGGCUUCGCCGA 0.1% 10234 5073 GaGCUUUCACCGAAGAGGG 0.1%
10184 5070 CCUUGAcCGGCUUCGCCGA 3.1% 10235 5073 GGGCcUUCACCGAAGAGGG 0.7%
10185 5070 CCUUGAUaGGCUUCGCCGA 0.1% 10236 5073 GGGCUaUCACCGAAGAGGG 0.1%
10186 5070 CCUUGAUCGaCUUCGCCGA 0.8% 10237 5073 GGGCUUUCACaGAAGAGGG 0.1%
10187 5070 CCUUGAUCGGaUUCGCCGA 0.1% 10238 5073 GGGCUUUCACCaAAGAGGG 0.1%
10188 5070 CCUUGAUCGGCUcCGCCGA 0.7% 10239 5073 GGGCUUUCACCGAAaAGGG 0.2%
10189 5070 CCUUGAUCGGCUUCaCCGA 0.1% 10240 5073 GGGCUUUCACCGAAGAaGG 0.1%
10190 5070 CCUUGAUCGGCUUCGCaGA 0.1% 10241 5073 GGGCUUUCACCGAAGAGGa 0.1%
10191 5070 uCUcGAUCGGCUUCGCCGA 0.1% 10242 5073 GGGCUUUCACCGAAGcGGG 0.2%
10192 5070 CCUUGAUaGaCUUCGCCGA 0.1% 10243 5073 GGGgUUUCACCGAAGAGGG 0.1%
10244 5073 GGGCcUUCACCGAgGAGGG 2.0% 10293 5078 AAGGGCUUUCACCGAgGAG 0.1%
5074 5074 AUAAGAUGGCUGAUUGAAG 92.1% 10294 5078 AAGGGCUUUCACuGAAGAG 0.3%
10245 5074 AUAAGAUGGCUGAUUGAgG 0.1% 10295 5078 AAGGGCUUUCAuCGAAGAG 0.1%
10246 5074 AUAAGAUGGuUGAUUGAAG 1.6% 10296 5078 AAGGGCUUUuACCGAAGAG 0.1%
10247 5074 AUAAGgUGGCUGAUUGAAG 1.8% 10297 5078 gAGGGCUUUCACCGAAGAG 0.4%
10248 5074 AUgAGAUGGCUGAUUGAAG 0.1% 10298 5078 AAGGGCUUUCACuGAgGAG 0.1%
10249 5074 AUAAGgUGGCUGAUUGAgG 0.1% 10299 5078 AAGaGCUUUCACCGAAGAG 0.1%
10250 5074 AUAAGAUGGCUaAUUGAAG 1.8% 10300 5078 AAGGGCcUUCACCGAAGAG 0.7%
10251 5074 AUAAGAUGGCUGAUcGAAG 0.3% 10301 5078 AAGGGCUaUCACCGAAGAG 0.1%
10252 5074 AUAAnAUGGCUGAUUGAAG 0.1% 10302 5078 AAGGGCUUUCACaGAAGAG 0.1%
10253 5074 AUAAGAUGGuUaAUUGAAG 2.0% 10303 5078 AAGGGCUUUCACCaAAGAG 0.1%
10254 5074 AUAAGgUGGuUaAUUGAAG 0.1% 10304 5078 AAGGGCUUUCACCGAAaAG 0.2%
5075 5075 UAAGAUGGCUGAUUGAAGA 92.1% 10305 5078 AAGGGCUUUCACCGAAGAa 0.1%
10255 5075 UAAGAUGGCUGAUUGAgGA 0.1% 10306 5078 AAGGGCUUUCACCGAAGcG 0.2%
10256 5075 UAAGAUGGuUGAUUGAAGA 1.6% 10307 5078 AAGGGgUUUCACCGAAGAG 0.1%
10257 5075 UAAGgUGGCUGAUUGAAGA 1.8% 10308 5078 uAGGGCUUUCACCGAAGAG 0.1%
10258 5075 UgAGAUGGCUGAUUGAAGA 0.1% 10309 5078 AAGGGCcUUCACCGAgGAG 2.0%
10259 5075 UAAGgUGGCUGAUUGAgGA 0.1% 5079 5079 UAAGGGCUUUCACCGAAGA 91.8%
10260 5075 UAAGAUGGCUaAUUGAAGA 1.8% 10310 5079 UAAGGGCUUUCACCGAgGA 0.1%
10261 5075 UAAGAUGGCUGAUcGAAGA 0.3% 10311 5079 UAAGGGCUUUCACuGAAGA 0.3%
10262 5075 UAAnAUGGCUGAUUGAAGA 0.1% 10312 5079 UAAGGGCUUUCAuCGAAGA 0.1%
10263 5075 UAAGAUGGuUaAUUGAAGA 2.0% 10313 5079 UAAGGGCUUUuACCGAAGA 0.1%
10264 5075 UAAGgUGGuUaAUUGAAGA 0.1% 10314 5079 UgAGGGCUUUCACCGAAGA 0.4%
5076 5076 AAGAUGGCUGAUUGAAGAA 91.9% 10315 5079 UAAGGGCUUUCACuGAgGA 0.1%
10265 5076 AAGAUGGCUGAUUGAAGAg 0.2% 10316 5079 aAAGGGCUUUCACCGAAGA 0.1%
10266 5076 AAGAUGGCUGAUUGAgGAA 0.1% 10317 5079 UAAGaGCUUUCACCGAAGA 0.1%
10267 5076 AAGAUGGuUGAUUGAAGAA 1.6% 10318 5079 UAAGGGCcUUCACCGAAGA 0.7%
10268 5076 AAGgUGGCUGAUUGAAGAA 1.8% 10319 5079 UAAGGGCUaUCACCGAAGA 0.1%
10269 5076 gAGAUGGCUGAUUGAAGAA 0.1% 10320 5079 UAAGGGCUUUCACaGAAGA 0.1%
10270 5076 AAGgUGGCUGAUUGAgGAA 0.1% 10321 5079 UAAGGGCUUUCACCaAAGA 0.1%
10271 5076 AAGAUGGCUaAUUGAAGAA 1.8% 10322 5079 UAAGGGCUUUCACCGAAaA 0.2%
10272 5076 AAGAUGGCUGAUcGAAGAA 0.3% 10323 5079 UAAGGGCUUUCACCGAAGc 0.2%
10273 5076 AAnAUGGCUGAUUGAAGAA 0.1% 10324 5079 UAAGGGgUUUCACCGAAGA 0.1%
10274 5076 AAGAUGGuUaAUUGAAGAA 2.0% 10325 5079 UuAGGGCUUUCACCGAAGA 0.1%
10275 5076 AAGgUGGuUaAUUGAAGAA 0.1% 10326 5079 UAAGGGCcUUCACCGAgGA 2.0%
5077 5077 CUAAGGGCUUUCACCGAAG 91.9% 5080 5080 GAUGGCUGAUUGAAGAAGU 91.7%
10276 5077 CUAAGGGCUUUCACCGAgG 0.1% 10327 5080 GAUGGCUGAUUGAAGAgGU 0.2%
10277 5077 CUAAGGGCUUUCACuGAAG 0.3% 10328 5080 GAUGGCUGAUUGAgGAAGU 0.1%
10278 5077 CUAAGGGCUUUCAuCGAAG 0.1% 10329 5080 GAUGGuUGAUUGAAGAAGU 1.6%
10279 5077 CUAAGGGCUUUuACCGAAG 0.1% 10330 5080 GgUGGCUGAUUGAAGAAGU 1.8%
10280 5077 CUgAGGGCUUUCACCGAAG 0.4% 10331 5080 GgUGGCUGAUUGAgGAAGU 0.1%
10281 5077 uUAAGGGCUUUCACCGAAG 0.1% 10332 5080 GAUGGCUaAUUGAAGAAGU 1.8%
10282 5077 CUAAGGGCUUUCACuGAgG 0.1% 10333 5080 GAUGGCUGAUcGAAGAAGU 0.3%
10283 5077 CaAAGGGCUUUCACCGAAG 0.1% 10334 5080 GAUGGCUGAUUGAAGAAaU 0.3%
10284 5077 CUAAGaGCUUUCACCGAAG 0.1% 10335 5080 nAUGGCUGAUUGAAGAAGU 0.1%
10285 5077 CUAAGGGCcUUCACCGAAG 0.7% 10336 5080 GAUGGuUaAUUGAAGAAGU 1.9%
10286 5077 CUAAGGGCUaUCACCGAAG 0.1% 10337 5080 GgUGGuUaAUUGAAGAAGU 0.1%
10287 5077 CUAAGGGCUUUCACaGAAG 0.1% 10338 5080 GAUGGuUaAUUGAAGAAaU 0.1%
10288 5077 CUAAGGGCUUUCACCaAAG 0.1% 5081 5081 AGAUGGCUGAUUGAAGAAG 91.7%
10289 5077 CUAAGGGCUUUCACCGAAa 0.2% 10339 5081 AGAUGGCUGAUUGAAGAgG 0.2%
10290 5077 CUAAGGGgUUUCACCGAAG 0.1% 10340 5081 AGAUGGCUGAUUGAgGAAG 0.1%
10291 5077 CUuAGGGCUUUCACCGAAG 0.1% 10341 5081 AGAUGGuUGAUUGAAGAAG 1.6%
10292 5077 CUAAGGGCcUUCACCGAgG 2.0% 10342 5081 AGgUGGCUGAUUGAAGAAG 1.8%
5078 5078 AAGGGCUUUCACCGAAGAG 91.8% 10343 5081 AGgUGGCUGAUUGAgGAAG 0.1%
10344 5081 AGAUGGCUaAUUGAAGAAG 1.8% 10394 5085 AAGCGAAUUUCAGUGUGgU 2.8%
10345 5081 AGAUGGCUGAUcGAAGAAG 0.3% 10395 5085 AgGCGAAUUUCAGUGUGAU 0.1%
10346 5081 AGAUGGCUGAUUGAAGAAa 0.3% 10396 5085 gAGCGAAUUUCAGUGUGAU 0.1%
10347 5081 AnAUGGCUGAUUGAAGAAG 0.1% 10397 5085 AAGCaAAUUUCAGUGUGAU 0.3%
10348 5081 AGAUGGuUaAUUGAAGAAG 1.9% 10398 5085 AAGCGAAcUUCAGUGUGAU 1.6%
10349 5081 AGgUGGuUaAUUGAAGAAG 0.1% 10399 5085 AAGCGAAUaUCAGUGUGAU 0.1%
10350 5081 AGAUGGuUaAUUGAAGAAa 0.1% 10400 5085 AAGCGAAUUUCAGcGUGAU 0.2%
5082 5082 ACUAAGGGCUUUCACCGAA 91.4% 10401 5085 AAGCGAAUUUCAGUGUaAU 0.2%
10351 5082 ACUAAGGGCUUUCACuGAA 0.3% 10402 5085 AAGCGAAUUUCAGUGUGAc 0.2%
10352 5082 ACUAAGGGCUUUCAuCGAA 0.1% 10403 5085 AAGCuAAUUUCAGUGUGAU 0.4%
10353 5082 ACUAAGGGCUUUuACCGAA 0.1% 10404 5085 AAGCaAAcUUCAGUGUGAU 0.9%
10354 5082 ACUgAGGGCUUUCACCGAA 0.4% 10405 5085 AAGCaAAcUUuAGUGUGAU 2.2%
10355 5082 AuUAAGGGCUUUCACCGAA 0.1% 5086 5086 GGCUUUCACCGAAGAGGGA 90.9%
10356 5082 gCUAAGGGCUUUCACCGAA 0.7% 10406 5086 GGCUUUCACCGAAGAGGGg 0.8%
10357 5082 ACUAAGGGCUUUCACuGAg 0.1% 10407 5086 GGCUUUCACCGAgGAGGGA 0.1%
10358 5082 gCUAAGGGCUUUCACCGAg 0.1% 10408 5086 GGCUUUCACuGAAGAGGGA 0.3%
10359 5082 ACaAAGGGCUUUCACCGAA 0.1% 10409 5086 GGCUUUCAuCGAAGAGGGA 0.1%
10360 5082 ACUAAGaGCUUUCACCGAA 0.1% 10410 5086 GGCUUUuACCGAAGAGGGA 0.1%
10361 5082 ACUAAGGGCcUUCACCGAA 0.7% 10411 5086 GGCUUUCACuGAgGAGGGA 0.1%
10362 5082 ACUAAGGGCUaUCACCGAA 0.1% 10412 5086 aGCUUUCACCGAAGAGGGA 0.1%
10363 5082 ACUAAGGGCUUUCACaGAA 0.1% 10413 5086 GGCcUUCACCGAAGAGGGA 0.5%
10364 5082 ACUAAGGGCUUUCACCaAA 0.1% 10414 5086 GGCUaUCACCGAAGAGGGA 0.1%
10365 5082 ACUAAGGGgUUUCACCGAA 0.1% 10415 5086 GGCUUUCACaGAAGAGGGA 0.1%
10366 5082 ACUuAGGGCUUUCACCGAA 0.1% 10416 5086 GGCUUUCACCaAAGAGGGA 0.1%
10367 5082 ACUAAGGGCcUUCACCGAg 2.0% 10417 5086 GGCUUUCACCGAAaAGGGA 0.2%
5083 5083 UACUAAGGGCUUUCACCGA 91.3% 10418 5086 GGCUUUCACCGAAGAaGGA 0.1%
10368 5083 UACUAAGGGCUUUCACuGA 0.4% 10419 5086 GGCUUUCACCGAAGAGGaA 0.1%
10369 5083 UACUAAGGGCUUUCAuCGA 0.1% 10420 5086 GGCUUUCACCGAAGAGGGc 0.6%
10370 5083 UACUAAGGGCUUUuACCGA 0.1% 10421 5086 GGCUUUCACCGAAGcGGGA 0.2%
10371 5083 UACUgAGGGCUUUCACCGA 0.4% 10422 5086 GGgUUUCACCGAAGAGGGA 0.1%
10372 5083 UAuUAAGGGCUUUCACCGA 0.1% 10423 5086 GGCcUUCACCGAAGAGGGg 0.2%
10373 5083 UgCUAAGGGCUUUCACCGA 0.8% 10424 5086 GGCcUUCACCGAgGAGGGA 2.0%
10374 5083 cACUAAGGGCUUUCACCGA 0.1% 5087 5087 GCUUUCACCGAAGAGGGAG 90.8%
10375 5083 UACaAAGGGCUUUCACCGA 0.1% 10425 5087 GCUUUCACCGAAGAGGGgG 0.8%
10376 5083 UACUAAGaGCUUUCACCGA 0.1% 10426 5087 GCUUUCACCGAgGAGGGAG 0.1%
10377 5083 UACUAAGGGCcUUCACCGA 2.7% 10427 5087 GCUUUCACuGAAGAGGGAG 0.3%
10378 5083 UACUAAGGGCUaUCACCGA 0.1% 10428 5087 GCUUUCAuCGAAGAGGGAG 0.1%
10379 5083 UACUAAGGGCUUUCACaGA 0.1% 10429 5087 GCUUUuACCGAAGAGGGAG 0.1%
10380 5083 UACUAAGGGCUUUCACCaA 0.1% 10430 5087 GCUUUCACuGAgGAGGGAG 0.1%
10381 5083 UACUAAGGGgUUUCACCGA 0.1% 10431 5087 GCcUUCACCGAAGAGGGAG 0.2%
10382 5083 UACUuAGGGCUUUCACCGA 0.1% 10432 5087 GCUaUCACCGAAGAGGGAG 0.1%
5084 5084 AAAGCGAAUUUCAGUGUGA 91.2% 10433 5087 GCUUUCACaGAAGAGGGAG 0.1%
10383 5084 AAAGCGAAUUUCAGUGUGg 2.8% 10434 5087 GCUUUCACCaAAGAGGGAG 0.1%
10384 5084 AAgGCGAAUUUCAGUGUGA 0.1% 10435 5087 GCUUUCACCGAAaAGGGAG 0.2%
10385 5084 AgAGCGAAUUUCAGUGUGA 0.1% 10436 5087 GCUUUCACCGAAGAaGGAG 0.1%
10386 5084 AAAGCaAAUUUCAGUGUGA 0.3% 10437 5087 GCUUUCACCGAAGAGGaAG 0.1%
10387 5084 AAAGCGAAcUUCAGUGUGA 1.6% 10438 5087 GCUUUCACCGAAGAGGGAa 0.1%
10388 5084 AAAGCGAAUaUCAGUGUGA 0.1% 10439 5087 GCUUUCACCGAAGAGGGAc 0.1%
10389 5084 AAAGCGAAUUUCAGcGUGA 0.2% 10440 5087 GCUUUCACCGAAGAGGGcG 0.6%
10390 5084 AAAGCGAAUUUCAGUGUaA 0.2% 10441 5087 GCUUUCACCGAAGcGGGAG 0.2%
10391 5084 AAAGCuAAUUUCAGUGUGA 0.4% 10442 5087 GgUUUCACCGAAGAGGGAG 0.1%
10392 5084 AAAGCaAAcUUCAGUGUGA 0.9% 10443 5087 GCcUUCACCGAgGAGGGAG 2.0%
10393 5084 AAAGCaAAcUUuAGUGUGA 2.2% 10444 5087 GCcUUCACCGAAGAGGGAa 0.3%
5085 5085 AAGCGAAUUUCAGUGUGAU 91.0% 10445 5087 GCUUUCACaGAAGAaGGAG 1.0%
10446 5087 GCcUUCACCGAAGAGGGga 0.2% 10497 5090 AAGAGGGgaCAAUUGUUGG 0.2%
10447 5087 GCUUUCACaGAAGAaGGgG 0.2% 10498 5090 AgGAGGGAGCAAUcGUUGG 0.1%
10448 5087 GCUUUCACgGAAGAaGGgG 0.1% 10499 5090 AAGAGGGAcgAAUUGUUGG 0.1%
5088 5088 AUUACUAAGGGCUUUCACC 90.8% 10500 5090 AAGAaGGgGCAAUUGUaGG 0.1%
10449 5088 AUUACUAAGGGCUUUCACu 0.3% 5091 5091 GAAGAGGGAGCAAUUGUUG 90.4%
10450 5088 AUUACUAAGGGCUUUCAuC 0.1% 10501 5091 GAAGAGGGAGCAgUUGUUG 0.2%
10451 5088 AUUACUAAGGGCUUUuACC 0.1% 10502 5091 GAAGAGGGAGuAAUUGUUG 0.7%
10452 5088 AUUACUgAGGGCUUUCACC 0.4% 10503 5091 GAAGAGGGgGCAAUUGUUG 0.8%
10453 5088 AUUAuUAAGGGCUUUCACC 0.1% 10504 5091 GAgGAGGGAGCAAUUGUUG 2.1%
10454 5088 AUUgCUAAGGGCUUUCACC 0.8% 10505 5091 aAAGAGGGAGCAAUUGUUG 0.1%
10455 5088 AcUACUAAGGGCUUUCACC 0.6% 10506 5091 GAAaAGGGAGCAAUUGUUG 0.2%
10456 5088 AUcACUAAGGGCUUUCACC 0.1% 10507 5091 GAAGAaGGAGCAAUUGUUG 0.1%
10457 5088 AUUACaAAGGGCUUUCACC 0.1% 10508 5091 GAAGAGGaAGCAAUUGUUG 0.1%
10458 5088 AUUACUAAGaGCUUUCACC 0.1% 10509 5091 GAAGAGGGAaCAAUUGUUG 0.4%
10459 5088 AUUACUAAGGGCcUUCACC 2.7% 10510 5091 GAAGAGGGAGCAAUcGUUG 0.3%
10460 5088 AUUACUAAGGGCUaUCACC 0.1% 10511 5091 GAAGAGGGAGCAAUUaUUG 0.1%
10461 5088 AUUACUAAGGGCUUUCACa 0.1% 10512 5091 GAAGAGGGAGCAAUUGUaG 0.1%
10462 5088 AUUACUAAGGGgUUUCACC 0.1% 10513 5091 GAAGAGGGcGCAAUUGUUG 0.6%
10463 5088 AUUACUuAGGGCUUUCACC 0.1% 10514 5091 GAAGcGGGAGCAAUUGUUG 0.2%
10464 5088 uUUACUAAGGGCUUUCACC 0.1% 10515 5091 GAAGAGGGgaCAAUUGUUG 0.2%
10465 5088 AcUACUAAGGGCUUUCACu 0.1% 10516 5091 GAgGAGGGAGCAAUcGUUG 0.1%
5089 5089 UUACUAAGGGCUUUCACCG 90.8% 10517 5091 GAAGAGGGAcgAAUUGUUG 0.1%
10466 5089 UUACUAAGGGCUUUCACuG 0.3% 10518 5091 GAAGAaGGgGCAAUUGUaG 0.1%
10467 5089 UUACUAAGGGCUUUCAuCG 0.1% 5092 5092 AGAGGGAGCAAUUGUUGGC 90.3%
10468 5089 UUACUAAGGGCUUUuACCG 0.1% 10519 5092 AGAGGGAGCAAUUGUUGGu 0.1%
10469 5089 UUACUgAGGGCUUUCACCG 0.4% 10520 5092 AGAGGGAGCAgUUGUUGGC 0.2%
10470 5089 UUAuUAAGGGCUUUCACCG 0.1% 10521 5092 AGAGGGAGuAAUUGUUGGC 0.7%
10471 5089 UUgCUAAGGGCUUUCACCG 0.8% 10522 5092 AGAGGGgGCAAUUGUUGGC 0.8%
10472 5089 CUACUAAGGGCUUUCACCG 0.6% 10523 5092 gGAGGGAGCAAUUGUUGGC 2.1%
10473 5089 UcACUAAGGGCUUUCACCG 0.1% 10524 5092 AaAGGGAGCAAUUGUUGGC 0.2%
10474 5089 UUACaAAGGGCUUUCACCG 0.1% 10525 5092 AGAaGGAGCAAUUGUUGGC 0.1%
10475 5089 UUACUAAGaGCUUUCACCG 0.1% 10526 5092 AGAGGaAGCAAUUGUUGGC 0.1%
10476 5089 UUACUAAGGGCcUUCACCG 2.7% 10527 5092 AGAGGGAaCAAUUGUUGGC 0.3%
10477 5089 UUACUAAGGGCUaUCACCG 0.1% 10528 5092 AGAGGGAGCAAUUaUUGGC 0.1%
10478 5089 UUACUAAGGGCUUUCACaG 0.1% 10529 5092 AGAGGGAGCAAUUGUaGGC 0.1%
10479 5089 UUACUAAGGGCUUUCACCa 0.1% 10530 5092 AGAGGGAGCAAUUGUUGcC 0.1%
10480 5089 UUACUAAGGGgUUUCACCG 0.1% 10531 5092 AGAGGGcGCAAUUGUUGGC 0.6%
10481 5089 UUACUuAGGGCUUUCACCG 0.1% 10532 5092 AGcGGGAGCAAUUGUUGGC 0.2%
10482 5089 cUACUAAGGGCUUUCACUG 0.1% 10533 5092 AGAGGGAaCAAUUGUUGGu 0.1%
5090 5090 AAGAGGGAGCAAUUGUUGG 90.4% 10534 5092 AGAGGGgaCAAUUGUUGGC 0.2%
10483 5090 AAGAGGGAGCAgUUGUUGG 0.2% 10535 5092 AGAGGGAcgAAUUGUUGGC 0.1%
10484 5090 AAGAGGGAGuAAUUGUUGG 0.7% 10536 5092 AGAGGGAGCAAUcGUUGGa 0.3%
10485 5090 AAGAGGGgGCAAUUGUUGG 0.8% 10537 5092 AGAaGGgGCAAUUGUaGGC 0.1%
10486 5090 AgGAGGGAGCAAUUGUUGG 2.1% 10538 5092 gGAGGGAGCAAUcGUUGGa 0.1%
10487 5090 AAaAGGGAGCAAUUGUUGG 0.2% 5093 5093 UCACCGAAGAGGGAGCAAU 90.3%
10488 5090 AAGAaGGAGCAAUUGUUGG 0.1% 10539 5093 UCACCGAAGAGGGAGCAgU 0.2%
10489 5090 AAGAGGaAGCAAUUGUUGG 0.1% 10540 5093 UCACCGAAGAGGGAGuAAU 0.7%
10490 5090 AAGAGGGAaCAAUUGUUGG 0.4% 10541 5093 UCACCGAAGAGGGgGCAAU 0.8%
10491 5090 AAGAGGGAGCAAUcGUUGG 0.3% 10542 5093 UCACCGAgGAGGGAGCAAU 2.1%
10492 5090 AAGAGGGAGCAAUUaUUGG 0.1% 10543 5093 UCACuGAAGAGGGAGCAAU 0.3%
10493 5090 AAGAGGGAGCAAUUGUaGG 0.1% 10544 5093 UCAuCGAAGAGGGAGCAAU 0.1%
10494 5090 AAGAGGGAGCAAUUGUUGc 0.1% 10545 5093 UuACCGAAGAGGGAGCAAU 0.1%
10495 5090 AAGAGGGcGCAAUUGUUGG 0.6% 10546 5093 UCACuGAgGAGGGAGCAAU 0.1%
10496 5090 AAGcGGGAGCAAUUGUUGG 0.2% 10547 5093 UCACaGAAGAGGGAGCAAU 0.1%
10548 5093 UCACCaAAGAGGGAGCAAU 0.1% 10600 5095 UUCACCGAAGcGGGAGCAA 0.2%
10549 5093 UCACCGAAaAGGGAGCAAU 0.2% 10601 5095 UUCACCGAAGAGGGgaCAA 0.2%
10550 5093 UCACCGAAGAaGGAGCAAU 0.1% 10602 5095 UUCACaGAAGAaGGAGCAA 1.0%
10551 5093 UCACCGAAGAGGaAGCAAU 0.1% 10603 5095 UUCACCGAAGAGGGAcgAA 0.1%
10552 5093 UCACCGAAGAGGGAaCAAU 0.4% 10604 5095 UUCACaGAAGAaGGgGCAA 0.2%
10553 5093 UCACCGAAGAGGGcGCAAU 0.6% 10605 5095 UUCACgGAAGAaGGgGCAA 0.1%
10554 5093 UCACCGAAGcGGGAGCAAU 0.2% 5096 5096 CUUUCACCGAAGAGGGAGC 90.1%
10555 5093 UCACCGAAGAGGGgaCAAU 0.2% 10606 5096 CUUUCACCGAAGAGGGAGu 0.7%
10556 5093 UCACaGAAGAaGGAGCAAU 1.0% 10607 5096 CUUUCACCGAAGAGGGgGC 0.8%
10557 5093 UCACCGAAGAGGGAcgAAU 0.1% 10608 5096 CUUUCACCGAgGAGGGAGC 0.1%
10558 5093 UCACaGAAGAaGGgGCAAU 0.2% 10609 5096 CUUUCACuGAAGAGGGAGC 0.3%
10559 5093 UCACgGAAGAaGGgGCAAU 0.1% 10610 5096 CUUUCAuCGAAGAGGGAGC 0.1%
5094 5094 UUUCACCGAAGAGGGAGCA 90.2% 10611 5096 CUUUuACCGAAGAGGGAGC 0.1%
10560 5094 UUUCACCGAAGAGGGAGuA 0.7% 10612 5096 CUUUCACuGAgGAGGGAGC 0.1%
10561 5094 UUUCACCGAAGAGGGgGCA 0.8% 10613 5096 CcUUCACCGAAGAGGGAGC 0.2%
10562 5094 UUUCACCGAgGAGGGAGCA 0.1% 10614 5096 CUaUCACCGAAGAGGGAGC 0.1%
10563 5094 UUUCACuGAAGAGGGAGCA 0.3% 10615 5096 CUUUCACaGAAGAGGGAGC 0.1%
10564 5094 UUUCAuCGAAGAGGGAGCA 0.1% 10616 5096 CUUUCACCaAAGAGGGAGC 0.1%
10565 5094 UUUuACCGAAGAGGGAGCA 0.1% 10617 5096 CUUUCACCGAAaAGGGAGC 0.2%
10566 5094 UUUCACuGAgGAGGGAGCA 0.1% 10618 5096 CUUUCACCGAAGAaGGAGC 0.1%
10567 5094 cUUCACCGAAGAGGGAGCA 0.2% 10619 5096 CUUUCACCGAAGAGGaAGC 0.1%
10568 5094 UaUCACCGAAGAGGGAGCA 0.1% 10620 5096 CUUUCACCGAAGAGGGAaC 0.1%
10569 5094 UUUCACaGAAGAGGGAGCA 0.1% 10621 5096 CUUUCACCGAAGAGGGcGC 0.6%
10570 5094 UUUCACCaAAGAGGGAGCA 0.1% 10622 5096 CUUUCACCGAAGcGGGAGC 0.2%
10571 5094 UUUCACCGAAaAGGGAGCA 0.2% 10623 5096 gUUUCACCGAAGAGGGAGC 0.1%
10572 5094 UUUCACCGAAGAaGGAGCA 0.1% 10624 5096 CcUUCACCGAgGAGGGAGC 2.0%
10573 5094 UUUCACCGAAGAGGaAGCA 0.1% 10625 5096 CcUUCACCGAAGAGGGAaC 0.3%
10574 5094 UUUCACCGAAGAGGGAaCA 0.1% 10626 5096 CUUUCACaGAAGAaGGAGC 1.0%
10575 5094 UUUCACCGAAGAGGGcGCA 0.6% 10627 5096 CUUUCACCGAAGAGGGAcg 0.1%
10576 5094 UUUCACCGAAGcGGGAGCA 0.2% 10628 5096 CcUUCACCGAAGAGGGgaC 0.2%
10577 5094 cUUCACCGAgGAGGGAGCA 2.0% 10629 5096 CUUUCACaGAAGAaGGgGC 0.2%
10578 5094 cUUCACCGAAGAGGGAaCA 0.3% 10630 5096 CUUUCACgGAAGAaGGgGC 0.1%
10579 5094 UUUCACaGAAGAaGGAGCA 1.0% 5097 5097 CCGAAGAGGGAGCAAUUGU 90.0%
10580 5094 UUUCACCGAAGAGGGAcgA 0.1% 10631 5097 CCGAAGAGGGAGCAgUUGU 0.2%
10581 5094 cUUCACCGAAGAGGGgaCA 0.2% 10632 5097 CCGAAGAGGGAGuAAUUGU 0.7%
10582 5094 UUUCACaGAAGAaGGgGCA 0.2% 10633 5097 CCGAAGAGGGgGCAAUUGU 0.8%
10583 5094 UUUCACgGAAGAaGGgGCA 0.1% 10634 5097 CCGAgGAGGGAGCAAUUGU 2.1%
5095 5095 UUCACCGAAGAGGGAGCAA 90.2% 10635 5097 CuGAAGAGGGAGCAAUUGU 0.3%
10584 5095 UUCACCGAAGAGGGAGCAg 0.2% 10636 5097 uCGAAGAGGGAGCAAUUGU 0.1%
10585 5095 UUCACCGAAGAGGGAGuAA 0.7% 10637 5097 CaGAAGAGGGAGCAAUUGU 0.1%
10586 5095 UUCACCGAAGAGGGgGCAA 0.8% 10638 5097 CCaAAGAGGGAGCAAUUGU 0.1%
10587 5095 UUCACCGAgGAGGGAGCAA 2.1% 10639 5097 CCGAAaAGGGAGCAAUUGU 0.2%
10588 5095 UUCACuGAAGAGGGAGCAA 0.3% 10640 5097 CCGAAGAaGGAGCAAUUGU 0.1%
10589 5095 UUCAuCGAAGAGGGAGCAA 0.1% 10641 5097 CCGAAGAGGaAGCAAUUGU 0.1%
10590 5095 UUuACCGAAGAGGGAGCAA 0.1% 10642 5097 CCGAAGAGGGAaCAAUUGU 0.4%
10591 5095 UUCACuGAgGAGGGAGCAA 0.1% 10643 5097 CCGAAGAGGGAGCAAUcGU 0.3%
10592 5095 aUCACCGAAGAGGGAGCAA 0.1% 10644 5097 CCGAAGAGGGAGCAAUUaU 0.1%
10593 5095 UUCACaGAAGAGGGAGCAA 0.1% 10645 5097 CCGAAGAGGGcGCAAUUGU 0.6%
10594 5095 UUCACCaAAGAGGGAGCAA 0.1% 10646 5097 CCGAAGcGGGAGCAAUUGU 0.2%
10595 5095 UUCACCGAAaAGGGAGCAA 0.2% 10647 5097 CCGAAGAGGGgaCAAUUGU 0.2%
10596 5095 UUCACCGAAGAaGGAGCAA 0.1% 10648 5097 CuGAgGAGGGAGCAAUcGU 0.1%
10597 5095 UUCACCGAAGAGGaAGCAA 0.1% 10649 5097 CCGAAGAGGGAcgAAUUGU 0.1%
10598 5095 UUCACCGAAGAGGGAaCAA 0.4% 10650 5097 CgGAAGAaGGgGCAAUUGU 0.1%
10599 5095 UUCACCGAAGAGGGcGCAA 0.6% 5098 5098 ACCGAAGAGGGAGCAAUUG 90.0%
10651 5098 ACCGAAGAGGGAGCAgUUG 0.2% 10681 5099 CGAAGAGGGAaCAAUUGUU 0.4%
10652 5098 ACCGAAGAGGGAGuAAUUG 0.7% 10682 5099 CGAAGAGGGAGCAAUcGUU 0.3%
10653 5098 ACCGAAGAGGGgGCAAUUG 0.8% 10683 5099 CGAAGAGGGAGCAAUUaUU 0.1%
10654 5098 ACCGAgGAGGGAGCAAUUG 2.1% 10684 5099 CGAAGAGGGAGCAAUUGUa 0.1%
10655 5098 ACuGAAGAGGGAGCAAUUG 0.3% 10685 5099 CGAAGAGGGcGCAAUUGUU 0.6%
10656 5098 AuCGAAGAGGGAGCAAUUG 0.1% 10686 5099 CGAAGcGGGAGCAAUUGUU 0.2%
10657 5098 ACaGAAGAGGGAGCAAUUG 0.1% 10687 5099 CGAAGAGGGgaCAAUUGUU 0.2%
10658 5098 ACCaAAGAGGGAGCAAUUG 0.1% 10688 5099 uGAgGAGGGAGCAAUcGUU 0.1%
10659 5098 ACCGAAaAGGGAGCAAUUG 0.2% 10689 5099 CGAAGAGGGAcgAAUUGUU 0.1%
10660 5098 ACCGAAGAaGGAGCAAUUG 0.1% 5100 5100 CACCGAAGAGGGAGCAAUU 90.0%
10661 5098 ACCGAAGAGGaAGCAAUUG 0.1% 10690 5100 CACCGAAGAGGGAGCAgUU 0.2%
10662 5098 ACCGAAGAGGGAaCAAUUG 0.4% 10691 5100 CACCGAAGAGGGAGuAAUU 0.7%
10663 5098 ACCGAAGAGGGAGCAAUcG 0.3% 10692 5100 CACCGAAGAGGGgGCAAUU 0.8%
10664 5098 ACCGAAGAGGGAGCAAUUa 0.1% 10693 5100 cACCGAgGAGGGAGCAAUU 2.1%
10665 5098 ACCGAAGAGGGcGCAAUUG 0.6% 10694 5100 CACuGAAGAGGGAGCAAUU 0.3%
10666 5098 ACCGAAGcGGGAGCAAUUG 0.2% 10695 5100 CAuCGAAGAGGGAGCAAUU 0.1%
10667 5098 ACCGAAGAGGGgaCAAUUG 0.2% 10696 5100 uACCGAAGAGGGAGCAAUU 0.1%
10668 5098 ACuGAgGAGGGAGCAAUcG 0.1% 10697 5100 CACaGAAGAGGGAGCAAUU 0.1%
10669 5098 ACCGAAGAGGGAcgAAUUG 0.1% 10698 5100 CACCaAAGAGGGAGCAAUU 0.1%
10670 5098 ACgGAAGAaGGgGCAAUUG 0.1% 10699 5100 CACCGAAaAGGGAGCAAUU 0.2%
5099 5099 CGAAGAGGGAGCAAUUGUU 90.0% 10700 5100 CACCGAAGAaGGAGCAAUU 0.1%
10671 5099 CGAAGAGGGAGCAgUUGUU 0.2% 10701 5100 CACCGAAGAGGaAGCAAUU 0.1%
10672 5099 CGAAGAGGGAGuAAUUGUU 0.7% 10702 5100 CACCGAAGAGGGAaCAAUU 0.4%
10673 5099 CGAAGAGGGgGCAAUUGUU 0.8% 10703 5100 CACCGAAGAGGGAGCAAUc 0.3%
10674 5099 CGAgGAGGGAGCAAUUGUU 2.1% 10704 5100 CACCGAAGAGGGcGCAAUU 0.6%
10675 5099 uGAAGAGGGAGCAAUUGUU 0.3% 10705 5100 CACCGAAGcGGGAGCAAUU 0.2%
10676 5099 aGAAGAGGGAGCAAUUGUU 0.1% 10706 5100 CACCGAAGAGGGgaCAAUU 0.2%
10677 5099 CaAAGAGGGAGCAAUUGUU 0.1% 10707 5100 CACuGAgGAGGGAGCAAUc 0.1%
10678 5099 CGAAaAGGGAGCAAUUGUU 0.2% 10708 5100 CACCGAAGAGGGAcgAAUU 0.1%
10679 5099 CGAAGAaGGAGCAAUUGUU 0.1% 10709 5100 CACgGAAGAaGGgGCAAUU 0.1%
10680 5099 CGAAGAGGaAGCAAUUGUU 0.1%
实施例16:siRNA静脉递送抑制体内流感病毒繁殖
本实施例证明靶向病毒NP转录子的siRNA预防性和感染后的静脉给药都显著抑制小鼠流感病毒复制(图2)。以下是示例性人类流感病毒保守靶序列(衍生自登记号AF389119)列表:
gccacugaaaucagagcau,(SEQ ID NO:10794)
ucagagcauccgucggaaa,(SEQ ID NO:10795)
ggacgauucuacauccaaa,(SEQ ID NO:10796)
cagcuuaacaauagagaga,(SEQ ID NO:10797)
gcuuaacaauagagagaau,(SEQ ID N0:10798)
aauagagagaauggugcuc,(SEQ ID NO:10799)
gggaaagauccuaagaaaa,(SEQ ID NO:10800)
ggaaagauccuaagaaaac,(SEQ ID NO:10801)
ugagagaacucauccuuua,(SEQ ID NO:10802)
uuaugacaaagaagaaaua,(SEQ ID NO:10803)
acaagaauugcuuaugaaa,(SEQ ID NO:10804)
gaauugcuuaugaaagaau,(SEQ ID NO:10805)
aagcaaugauggaucaagu,(SEQ ID N0:10806)
gcaaugauggaucaaguga,(SEQ ID NO:10807)
ugauggaucaagugagaga,(SEQ ID NO:10808)
ccacuagaggaguucaaau,(SEQ ID NO:10809)
cacuagaggaguucaaauu,(SEQ ID NO:10810)
gaggaaacaccaaucaaca,(SEQ ID NO:10811)
ggaaacaccaaucaacaga,(SEQ ID NO:10812)
gggccaaaucagcauacaa,(SEQ ID NO:10813)
caaccauuauggcagcauu,(SEQ ID NO:10814)
ccauuauggcagcauucaa,(SEQ ID NO:10815)
aggaugauggaaagugcaa,(SEQ ID NO:10816)
gaugauggaaagugcaaga,(SEQ ID NO:10817)
gaguaaugaaggaucuuau,(SEQ ID NO:10818)
ggaucuuauuucuucggag,(SEQ ID NO:10819)
gaucuuauuucuucggaga,(SEQ ID NO:10820)
ucuuauuucuucggagaca,(SEQ ID NO:10821)
ggaguacgacaauuaaaga,(SEQ ID NO:10822)
以下是对多种物种代表流感病毒NP基因序列的列表。加粗部分是这些序列共有的保守区。
流感毒株 流感NP基因保守区的核苷酸序列 SEQ ID NO
PR8(H1N1),AATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTA, 11471
WSN(H1N1),AATGAAGGATCTTATTTCTTCGGGACAATGCAGAGGAGTACGACAATTA, 11472
Lenn.(H2N2),AATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTA,11473
HK(H2N2),AATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTA, 11474
Memphis(H3N2),AATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTA,11475
HK(H5N1),AATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAATATGACAATTG, 11476
Duck(H10N7),AACGAGGGATCTTATTTCTTCGGAGACAATGCAGAGGAATATGACAATTA, 11477
Equine(H7N7),AATGAAGGGTCTTATTTCTTCGGAGACAATGCTGAGGAGTTTGACAGTTA, 11478
Whale (H13N2),AATGAGGGATCTTATTTCTTCGGAGACAATGCTGAGGAGTATGACAATTG, 11479
Chicken(H9N2),AATGAAGGATCTTATTTCTTCGGAGACAATGCATAGGAGTATGACAATTA, 11480
Swine(H4N6),AACGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAATATGACAATTA, 11481
为了检测病毒靶向siRNA的预防用途,NP-1496(INFsi-9)与阳离子递送聚合物jetPEI(Qbiogene)混合并静脉注射(IV)(2mg/Kg)于C57BL/6小鼠。三小时后,以1×104PR8病毒颗粒接种(鼻内)小鼠以起始感染,24小时后处死小鼠以使用MDCK血凝素检测来检测肺匀浆的病毒滴度。
如图2所示,未接受siRNA处理(NT;填充方块)或接受靶向于GFP的siRNA(GFP 60μg;空白方块)的小鼠的肺匀浆的平均log10TCID50是4.2。以30μg靶向于NP的siRNA(NP 30μg;空白圆圈)和jetPEI预处理的小鼠中肺匀浆的平均log10TCID50是3.9。以60μg靶向于NP的siRNA(NP 60μg;填充圆圈)和jetPEI预处理的小鼠中肺匀浆的平均log10TCID50是3.2。无处理组和接受60μgNP siRNA组的肺匀浆病毒滴度之间的差异是显著的(P=0.0002)。
为了评价siRNA对已有流感感染作为治疗处理,以PR8病毒鼻内感染小鼠,五小时后,静脉给药NP-1496/ietPEI或PA-2087/jetPEI混合物。感染28小时后使用MDCK-HA检测来检测肺的病毒滴度。相对于未处理的感染小鼠,所有处理都显著减少病毒滴度;以NP-1496处理的小鼠中观察到剂量-响应性病毒滴度减少(图3)。小鼠中还观察到感染后24小时siRNA处理的抑制效应。
进一步,设计的siRNA还可保护小鼠不受禽流感病毒的致死攻击。注射对照(GFP-靶向)siRNA并随后以致死剂量H1N1(PR8)、H5N1或H7N7病毒攻击的小鼠(2×),持续减重并在7-10日死于感染,如图4所示。然而,接受组合siRNANP-1496和PA-2087的感染小鼠从最初的体重减轻中恢复。至少50%小鼠在H7N7致死攻击中存活,87%小鼠在H5N1致死攻击中存活,100%小鼠在H1N1致死攻击中存活。因此,对流感病毒基因组保守区特异性的siRNA赋予了宽的保护,包括针对高致病性禽流感病毒的保护(图4)。
实施例17a:siRNA的鼻内递送抑制小鼠流感产生
本实施例证明靶向于病毒NP转录子的siRNA预防性鼻内给药抑制流感病毒复制并以剂量依赖性方式减少小鼠病毒RNA水平。
流感通常在上呼吸道和肺中感染和复制。因此,由于可到达性,局部给药对流感预防和治疗是理想的,即鼻内和/或肺递送药物。尤其是,鼻内和/或肺递送siRNA对治疗流感病毒感染是有利的,因为:1)当使用局部递送途经时易于达到高的局部siRNA浓度,因此比系统递送需要较少siRNA;2)鼻内和/或肺递送方法是非侵袭性的。因此,在流感小鼠模型中进行了鼻内siRNA递送。
不同于导致可忽略沉默效应的常规静脉递送裸siRNA,鼻内递送siRNA(未修饰的,PBS或盐水中)可在肺中检测,并能沉默内源基因表达或抑制肺组织中病毒繁殖。为了检测靶向流感的siRNA的非侵袭性递送酌效力,鼻内递送NP-1496 siRNA(PBS中)。以所指量的PBS中的NP特异性siRNA或PBS对照鼻内处理BALB/c小鼠。2小时后,所有小鼠鼻内感染PR8血清型(1000pfu)。感染24小时后收集肺,由MDCK-HA检测从肺匀浆测量病毒滴度。PBS组和0.5、1、2mg/kg siRNA处理组之间的P值表示统计显著性。数据显示于图5。
没有载体的情况下,裸NP靶向siRNA有效抑制小鼠肺中病毒繁殖(图5;感染24小时后)。抑制是剂量依赖性的,感染2小时前递送2mg/kg siRNA时观察到7倍减少。
还在较高浓度研究了鼻内递送NP靶向siRNA(10mg/kg,感染3小时前递送)的效力,使用靶mRNA表达(定量RT-PCR)和病毒滴度(MDCK-HA)来测量效力。BALB/c小鼠鼻内给药对照和NP靶向siRNA(10mg/kg,PBS中)。3小时后,所有小鼠鼻内感染PR8病毒(50pfu/小鼠)。感染24小时和48小时后收集肺,从左肺提取总RNA。使用dT18引物将总mRNA反转录为cDNA。使用PB1特异性引物进行实时PCR,以定量病毒mRNA水平。GAPDH用作内对照。将右肺和中肺匀浆,由MDCK-HA检测测量病毒滴度。感染48小时后样品中病毒滴度示于图6,使用student t检测发现PBS组和NP siRNA处理组之间的统计显著性(p=0.01);感染24小时后样品中的病毒滴度太低而检测不到,可能是由于siRNA引导的抑制。
结果显示于图6。图6比较了标准化的定量PCR结果和病毒滴度检测结果。感染24小时后测量的病毒mRNA水平显示55.2%抑制,但感染48小时后仅观察到很小的抑制。相反,小鼠肺样品的MDCK-HA检测表示在第2天84.6%病毒滴度抑制。相对于测量活病毒颗粒的MDCK-HA检测,病毒mRNA定量可能在反映病毒复制早期变化方面更敏感。因此,在第2天病毒mRNA抑制的减少可能是因为那时小鼠肺中RNAi效应减少。
还比较了鼻内递送的靶向NP转录子的裸siRNA与流感治疗Tamiflu对流感病毒滴度的效应。相对于GFP对照siRNA观察到的病毒滴度水平,鼻内递送的裸siRNA与Tamiflu治疗都减少流感病毒滴度。
还指出了鼻内递送siRNA G1498(INFsi-8)后NP-病毒转录子靶向对病毒滴度的效应。G1498 siRNA表现出体外减少病毒滴度的强效力,因此被选择在体内进一步鉴定。该研究的对照是未修饰的靶向荧光素酶的siRNA(Dharmacon;Luc)。该研究中使用体重范围为18-22克的10周大的雌性BALB/c(Taconic)。每个研究组有10只小鼠。小鼠以2mg/kg、5mg/kg、10mg/kg、20mg/kg和30mg/kg给药PBS中的G1498 siRNA。对照组给药同样的,除了都不给药2mg/kg剂量。siRNA给药4小时后以30μl PBS中的30 pfu PR8流感病毒感染。感染48小时后,收集小鼠肺,在MDCK细胞中以TCID50检测测量其病毒滴度。
结果示于图7。TCID50检测的结果表示2 mg/kg的G1498 siRNA抑制小鼠流感生产86%,5mg/kg和10 mg/kg的抑制90.6%,20mg/kg的抑制96.6%,30mg/kg的抑制95.2%。与单独PBS或Luc对照siRNA研究组相比,鼻内给药G1498 siRNA的小鼠总体上显示显著差异(P<0.001)。总体上,接受PBS的小鼠与接受Luc siRNA的小鼠组相比没有表现显著差异(P>0.05)。接受一种剂量G1498 siRNA的每个研究组显著不同于30mg/kg的PBS组或Luc siRNA对照研究组(P<0.05)。最后,接受G1498siRNA剂量范围的小鼠未观察到显著的剂量响应。
实施例17b:siRNA的鼻内递送抑制非流感小鼠模型中亲环蛋白B表达
本实施例证明经由鼻内给药的裸siRNA的气道细胞摄取不是流感感染细胞的特有现象。此外,鼻内递送的裸siRNA还减少健康小鼠肺中内源基因亲环蛋白B的表达。以10mg/kg亲环蛋白B特异性siRNA(Dharmacon)或PBS中的GFP siRNA或PBS对照鼻内处理Balb/c小鼠。每组有5只小鼠。24小时后收集小鼠肺。从肺样品纯化总RNA,使用dT18引物进行反转录。使用亲环蛋白B特异性引物(Applied Biosystem)进行实时PCR,以定量靶mRNA水平。GAPDH-特异性引物(Applied Biosystem)在PCR中用作对照。
如图8所示,小鼠接受鼻内递送10mg/kg亲环蛋白B siRNA24小时后肺中亲环蛋白B mRNA被抑制70%。这些数据表示经由鼻内给药的裸siRNA的气道细胞摄取不是流感感染细胞的特有现象。鼻内递送裸siRNA也能达到健康动物中健康细胞的内源基因沉默。该发现对siRNA的预防用途是高度相关的,其可在无感染的情况下发生。
实施例18:鼻内给药蜗状siRNA制品后减少小鼠流感病毒滴度
本实施例证明以蜗状递送制品(BDSI,North Carolina)鼻内给药G1498siRNA比裸siRNA增强小鼠中流感病毒抑制。对本实施例,测试的制品示于表21。
表21.鼻内给药于小鼠的制品
研究组 | 制品 |
缓冲液(对照) | TES+2mM Ca+2 |
蜗状安慰剂 | 40mg DOPS/ml |
蜗状亲环蛋白B siRNA | 起始物质的4mg/ml(10mg/kg)siRNA(HPLC的0.963mg/ml) |
蜗状未脂化G1498 siRNA(U-flu) | 起始物质的4mg/ml siRNA(HPLC的2.752mg/ml) |
蜗状脂化G1 498 siRNA(L-flu) | 起始物质的4mg/ml siRNA(HPLC的1.546mg/ml) |
裸未脂化G1498 siRNA(U-flu) | 起始物质的6.8mg/ml siRNA(HPLC的2.752mg/ml) |
裸未脂化G1498 siRNA(U-flu) | 起始物质的10mg/ml siRNA(4mg/mlHPLC) |
裸脂化G1498 siRNA(U-flu) | 起始物质的10mg/ml siRNA(4mg/mlHPLC) |
上述制品在流感感染5小时后鼻内给药。感染48小时后测量全肺的病毒滴度。除了裸未脂化U-flu组有5只小鼠以外,每个研究组有10只小鼠。
肺病毒滴度结果示于图9。图上的每个点代表一只动物。以One-Way-Anova进行统计。带有星号的数字表示平均值与对照(安慰剂或缓冲液)相比有统计差异。图8的数据表示相对于裸G1498 siRNA和对照(仅缓冲液或蜗状安慰剂),鼻内递送的带有蜗状递送制品的G1498 siRNA显示出更大的病毒滴度减少。接受蜗状制品或裸脂化siRNA的所有组都观察到一定程度的毒性。
实施例19:静脉给药蜗状siRNA制品后减少小鼠流感病毒滴度
本实施例证明以蜗状递送制品静脉给药G1498 siRNA比裸siRNA增强小鼠中流感病毒抑制。测试的制品示于表22。
表22.静脉给药于小鼠的制品
研究组 | 制品 |
缓冲液(对照) | TES+2mM Ca+2 |
蜗状安慰剂 | 40mg DOPS/ml |
蜗状亲环蛋白B siRNA | 起始物质的1mg/ml(10mg/kg)siRNA(HPLC的0.607mg/ml) |
蜗状未脂化G1498 siRNA(U-flu) | 起始物质的1mg/ml siRNA(HPLC的1.196mg/ml) |
蜗状脂化G1498 siRNA(L-flu) | 起始物质的1mg/ml siRNA(0.381mg/mlHPLC) |
裸未脂化G1498 siRNA(U-flu) | 起始台物质的10mg/ml siRNA(4mg/mlHPLC) |
上述制品在流感感染5小时后静脉给药。感染48小时后测量全肺的病毒滴度。除了裸未脂化U-flu组有5只小鼠以外,每个研究组有10只小鼠。
肺病毒滴度结果示于图10A。图上的每个点代表一只动物。以One-Way-Anova进行统计。带有星号的数字表示平均值与对照(安慰剂或缓冲液)相比有统计差异。图9的数据表示相对于对照(仅缓冲液或蜗状安慰剂),静脉给药的带有蜗状递送制品的G1498 siRNA显示出更大的病毒滴度减少。而且,静脉给药的U-flu制品还减少肺病毒滴度。
以蜗状制品递送的静脉给药siRNA还产生剂量响应图谱。测试的制品示于表23。
表23.静脉给药于小鼠用于研究剂量响应的制品
研究组 | 制品 |
缓冲液(对照) | TES+2mM Ca+2 |
蜗状亲环蛋白B siRNA | 起始物质的2.5mg/ml(10mg/kg)siRNA |
蜗状未脂化G1498 siRNA(U-flu) | 起始物质的2.5mg/ml siRNA |
蜗状未脂化G1498 siRNA(L-flu) | 起始物质的1mg/ml siRNA |
蜗状未脂化G1498 siRNA(U-flu) | 起始物质的0.4mg/ml siRNA |
蜗状未脂化G1498 siRNA(U-flu) | 起始物质的0.15mg/ml siRNA |
上述制品在流感感染5小时后静脉给药。感染48小时后测量全肺的病毒滴度。除了裸未脂化U-flu组有5只小鼠以外,每个研究组有10只小鼠。
肺病毒滴度结果示于图10B。图上的每个点代表一只动物。以One-Way-Anova进行统计。带有星号的数字表示平均值与对照(安慰剂或缓冲液)相比有统计差异。图10的数据表示相对于缓冲液对照,静脉给药的带有蜗状递送制品的G1498 siRNA显示出更大的病毒滴度减少。而且,还观察到剂量响应。随着G1498 siRNA在蜗状制品中剂量增加,观察到小鼠肺病毒滴度的更大减少。
遵照为了测量小鼠病毒滴度的同样实验方案和步骤,列于表23的制品通过口饲给药于小鼠。肺病毒滴度结果示于图10B。如此前所述,每个点代表一只小鼠。所测试制品之间没有观察到统计差异。此外,研究组都没有观察到毒性。
实施例20:流感感染前后若丹明-蜗状物在小鼠肺中的分布
本实施例证明若丹明-蜗状物无siRNA制品的鼻内给药比静脉或口饲给药显示了若丹明的广泛分布。对本发明,若丹明包裹在无siRNA的蜗状物中。流感感染前4小时或感染后4小时,若丹明-蜗状物制品经由鼻内(40mg/ml,50μl/小鼠)、静脉(10mg/ml,200μl/小鼠)或口饲(10mg/ml,200μl/小鼠)给药。最后注射或感染5小时后收集小鼠肺组织,以干冰冷冻,切片用于分析。冷冻切片以DAPI对核染色并成像。
流感感染前和感染后的结果对所有组是相似的。然而,经受鼻内给药若丹明-蜗状物制品的组在肺切片中显示若丹明的宽分布。经受静脉给药的组在肺切片中显示一些若丹明的聚集,但具有有限的分布阳性信号。口饲的个体不显示阳性信号。这些数据表示以鼻内给药能最好地达到用于治疗呼吸道病毒感染的肺中蜗状物制品的彻底分布。肺中的彻底分布对有效减少病毒滴度很重要。
实施例21.产生和测试衍生自副流感病毒的siRNA
使用上述方法或从公众可获得的序列鉴别副流感病毒核蛋白。使用上述方法从编码副流感病毒核蛋白的核酸中鉴别siRNA。
表24-A列出了作为siRNA副流感病毒核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表24A-B所列每条序列可获得大量有义和反义siRNA。
此处提供的表24A-B和所有其它公开了衍生自病毒(除了上述对流感病毒)的靶序列的表格还公开了称为“保守靶序列”的靶序列的子集。这些保守靶序列在大量病毒核蛋白序列中是高度保守的。
此处提供的表24A-B和所有其它公开了衍生自具有非分段基因组的负链病毒的靶序列的表格还公开了5’核苷酸在病毒核蛋白基因中的位置。
表24A.人类副流感病毒-2(登记号NC003443) | |||||
5’核苷酸位置 | 靶序列 | SEQIDNO | 5’核苷酸位置 | 保守靶序列 | SEQ IDNO |
81 | ccgguaacgauuccaguuu | 10823 | 81 | ccgguaacgauuccaguuu | 10823 |
83 | gguaacgauuccaguuuua | 10824 | 83 | gguaacgauuccaguuuua | 10824 |
263 | ggguauuugucaucaauaa | 10825 | 263 | ggguauuugucaucaauaa | 10825 |
264 | gguauuugucaucaauaau | 10826 | 264 | gguauuugucaucaauaau | 10826 |
294 | cguaagaucuagacuuuua | 10827 | 294 | cauaagaucuagacuuuua | 10827 |
375 | ccucagucuuuuaucacua | 10828 | 375 | ccucagucuuuuaucacua | 10828 |
408 | gaguaaucacaucaaauua | 10829 | 408 | gaguaaucacaucaaauua | 10829 |
439 | ccagaagccagcaugaua | 10830 | 439 | ccagaagccagcauagaua | 10830 |
449 | gcauagauagaguagagau | 10831 | 449 | gcauagauagaguagagau | 10831 |
450 | cauagauagaguagagaua | 10832 | 450 | cauagauagaguagagaua | 10832 |
465 | gauaacaggguuugagaau | 10833 | 465 | gauaacaggguuugagaau | 10833 |
473 | gguuugagaauaauucauu | 10834 | 473 | gguuugagaauaauucauu | 10834 |
502 | ccagaugcucgaucaacua | 10835 | 502 | ccagaugcucgaucaacua | 10835 |
527 | gaggagaggugcuggcuuu | 10836 | 527 | gaggagaggugcuggcuuu | 10836 |
556 | gcugaggacauuccugaua | 10837 | 556 | gcugaggacauuccugaua | 10837 |
561 | ggacauuccugauacccuu | 10838 | 561 | ggacauuccugauacccuu | 10838 |
585 | ccaaacuccauuuguaaau | 10839 | 585 | ccaaacuccauugguaaau | 10839 |
666 | gcuuaugcaggcauggaua | 10840 | 666 | gcuuaugcaggcauggaua | 10840 |
741 | ggcuaaauaucaacaacaa | 10841 | 741 | ggcuaaauaucaacaacaa | 10841 |
761 | ggagaaucaaugcuaggua | 10842 | 761 | ggagaaucaaugcuaggua | 10842 |
762 | gagaaucaaugcuagguau | 10843 | 762 | gagaaucaaugcuagguau | 10843 |
790 | ccugaagcacaaagacuaa | 10844 | 790 | ccugaagcacaaagacuaa | 10844 |
796 | gcacaaagacuaauucaga | 10835 | 796 | gcacaaagacuaauucaga | 10845 |
822 | ccgcaagucaaugguagua | 10846 | 822 | ccgcaagucaaugguagua | 10846 |
892 | gcaaaccgcuacuaugcua | 10847 | 955 | ggauuuuucuuaacacuua | 10849 |
942 | cagcggaaugggaggauuu | 10848 | 1025 | gggaacuccagaaauuaaa | 10852 |
955 | ggauuuuucuuaacacuua | 10849 | 1082 | ccaaguacauggcucuauu | 10853 |
985 | ggaacaagauggccuacau | 10850 | 1086 | guacauggcucuauuagaa | 10854 |
1024 | ggggaacuccagaaauuaa | 10851 | 1106 | caccaaaacugauggauuu | 10855 |
1025 | gggaacuccagaaauuaaa | 10852 | 1133 | cugaauauccauuagauua | 10856 |
1082 | ccaaguacauggcucuauu | 10853 | 1164 | ggguauuggaacuguccuu | 10857 |
1086 | guacauggcucuauuagaa | 10854 | 1172 | gaacuguccuugauacaaa | 10858 |
1106 | caccaaaacugauggauuu | 10855 | 1183 | gauacaaauaugagaaauu | 10859 |
1133 | cugaauauccauuagauua | 10856 | 1204 | gcauacgguagaucauauu | 10860 |
1164 | ggguauuggaacuguccuu | 10857 | 1209 | cgguagaucauauuuaaau | 10861 |
1172 | gaacuguccuugauacaaa | 10858 | 1217 | cauauuuaaaucagcaaua | 10862 |
1183 | gauacaaauaugagaaauu | 10859 | 1247 | gaguagaaacagcaaggaa | 10863 |
1204 | gcauacgguagaucauauu | 10860 | 1307 | gcaugacugcugcagacaa | 10864 |
1209 | cgguagaucauauuuaaau | 10861 | 1308 | caugacugcugcagacaaa | 10865 |
1217 | cauauuuaaaucagcaaua | 10862 | 1339 | gcaaccauaucaaagcuau | 10866 |
1247 | gaguagaaacagcaaggaa | 10863 | 1398 | cccauuugcuggagcaaau | 10867 |
1307 | gcaugacugcugcagacaa | 10864 | 1408 | ggagcaaaugacagagaaa | 10868 |
1308 | caugacugcugcagacaaa | 10865 | 1419 | cagagaaaugggaggacaa | 10869 |
1339 | gcaaccauaucaaagcuau | 10866 | 1428 | gggaggacaagcaaaugau | 10870 |
1398 | cccauuugcuggagcaaau | 10867 | 1429 | ggaggacaagcaaaugaua | 10871 |
1408 | ggagcaaaugacagagaaa | 10868 | 1453 | guguauaacuucaauccaa | 10872 |
1419 | cagagaaaugggaggacaa | 10869 | 1512 | ggacagaauugacaacgau | 10873 |
1428 | gggaggacaagcaaaugau | 10870 | 1515 | cagaauugacaacgaucaa | 10874 |
1429 | ggaggacaagcaaaugaua | 10871 | 1589 | gugacaaccagcagagauu | 10875 |
1453 | guguauaacuucaauccaa | 10872 | 1621 | ccgcaaagaacaucaggua | 10876 |
1512 | ggacagaauugacaacgau | 10873 | 1622 | cgcaaagaacaucagguau | 10877 |
1515 | cagaauugacaacgaucaa | 10874 | 1682 | gugcuaugcaugagcaaua | 10878 |
1589 | gugacaaccagcagagauu | 10875 | 1710 | ccaggaugaugaugccaau | 10879 |
1621 | ccgcaaagaacaucaggua | 10876 | 1713 | ggaugaugaugccaaugau | 10880 |
1622 | cgcaaagaacaucagguau | 10877 | 1733 | ccacagaugggaaugacau | 10881 |
1682 | gugcuaugcaugagcaaua | 10878 | |||
1710 | ccaggaugaugaugccaau | 10879 | |||
1713 | ggaugaugaugccaaugau | 10880 | |||
1733 | ccacagaugggaaugacau | 10881 | |||
1781 | ccuaacucucaaugucaua | 10882 | |||
1887 | cggaaacaauucucucaua | 10883 | |||
1888 | ggaaacaauucucccauaa | 10884 |
体外分析
以不同浓度的siRNA转染肺上皮细胞系A549细胞。Dharmacon的Sicontrol用作对照siRNA。Lipofectamine 2000用作转染剂,并根据制造商的说明。4小时后,以人类副流感病毒(hPIV)感染转染的A549细胞。在合适的时间点收集细胞,分离RNA。如Hino等(5)所述的进行RT和实时PCR。收集siRNA转染细胞和PIV感染细胞的培养上清液。将上清液的2-倍稀释物与0.05%豚鼠红细胞(6)混合,进行血凝素检测而测量病毒滴度。A549细胞也首先感染hPIV,在合适时间点转染不同浓度的siRNA。在合适时间点收集细胞和上清液。从细胞分离RNA,如上所述以基因特异性引物进行RT和实时PCR以确定siRNA的沉默效力。使用如上所述的血凝素检测和实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。
体内分析
麻醉的Balb/c小鼠鼻内给药2-10mg/kg剂量的修饰或未修饰siRNA,带有或不带有制品。Dharmacon的Sicontrol以同样剂量给药。合适的时间点后以107人类副流感3型感染动物。病毒感染后不同时间点杀死动物,收集肺组织。对病毒核衣壳基因进行实时PCR以确定病毒复制(5)。还使用肺匀浆来通过上述血凝素检测(6)确定病毒滴度。为了研究siRNA的治疗价值,首先以hPIV-3感染动物然后在最佳时间点给药hPIV特异性siRNA和对照siRNA。由上述方法监控肺组织中的病毒感染。
实施例22.产生和测试衍生自hMPV病毒的siRNA
使用上述方法或从公众可获得的序列鉴别人类MPV病毒核蛋白。使用上述方法从编码MPV核蛋白的核酸中鉴别siRNA。
表25列出了作为siRNA人类偏肺病毒核蛋白靶序列的19-核苷酸区。图1A证明人类偏肺病毒核蛋白序列与其衍生的共有序列之间的比对。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表25所列每条序列可获得大量有义和反义siRNA。
表25.人类偏肺病毒(登记号AY297748) | |||||
5’核苷酸位置 | 靶序列 | SEQ IDNO | 保守靶序列 | SEQ IDNO | |
60 | cuucaagggauucaccuaa | 10885 | 60 | cuucaagggauucaccuaa | 10885 |
74 | ccuaagugaucugucauau | 10886 | 74 | ccuaagugaucugucauau | 10886 |
75 | cuaagugaucugucauaua | 10887 | 75 | cuaagugaucugucauaua | 10887 |
86 | gucauauaaacaugcuaua | 10888 | 86 | gucauauaaacaugcuaua | 10888 |
88 | cauauaaacaugcuauauu | 10889 | 88 | cauauaaacaugcuauauu | 10889 |
111 | gagucucaauacacaauaa | 10890 | 111 | gagucucaauacacaauaa | 10890 |
122 | cacaauaaaaagagaugua | 10891 | 122 | cacaauaaaaagagaugua | 10891 |
166 | caucauugcagcaagagau | 10892 | 174 | cagcaagagauaacacuuu | 10894 |
173 | gcagcaagagauaacacuu | 10893 | 198 | ggagagauucuuuacacua | 10895 |
174 | cagcaagagauaacacuuu | 10894 | 199 | gagagauucuuuacacuaa | 10896 |
198 | ggagagauucuuuacacua | 10895 | 214 | cuaaacauacugauuacaa | 10897 |
199 | gagagauucuuuacacuaa | 10896 | 230 | caaauaugcugcagagaua | 10898 |
214 | cuaaacauacugauuacaa | 10897 | 240 | gcagagauagggauacaau | 10899 |
230 | caaauaugcugcagagaua | 10898 | 241 | cagagauagggauacaaua | 10900 |
240 | gcagagauagggauacaau | 10899 | 243 | gagauagggauacaauaua | 10901 |
241 | cagagauagggauacaaua | 10900 | 245 | gauagggauacaauauauu | 10902 |
243 | gagauagggauacaauaua | 10901 | 249 | gggauacaauauauuugca | 10903 |
245 | gauagggauacaauauauu | 10902 | 269 | ggcucuaggaucagaaaga | 10904 |
249 | gggauacaauauauuugca | 10903 | 280 | cagaaagaguacaacagau | 10905 |
269 | ggcucuaggaucagaaaga | 10904 | 282 | gaaagaguacaacagauuu | 10906 |
280 | cagaaagaguacaacagau | 10905 | 288 | guacaacagauuuuaagaa | 10907 |
282 | gaaagaguacaacagauuu | 10906 | 313 | gcagugaaguucagguggu | 10909 |
288 | guacaacagauuuuaagaa | 10907 | 381 | gaguugcaaauguuagaua | 10919 |
291 | caacagauuuuaagaaauu | 10908 | 383 | guugcaaauguagauaua | 10920 |
313 | gcagugaaguucagguggu | 10909 | 386 | gcaaauguuagauauacau | 10921 |
314 | cagugaaguucaggugguu | 10910 | 396 | gauauacauggaguggaaa | 10922 |
341 | gacauacucuuuagggaaa | 10911 | 416 | gaguuggguagaagaaaua | 10924 |
347 | cucuuuagggaaagguaaa | 10912 | 421 | ggguagaagaaauagacaa | 10925 |
354 | gggaaagguaaaaauagua | 10913 | 422 | gguagaagaaauagacaaa | 10926 |
355 | ggaaagguaaaaauaguaa | 10914 | 429 | gaaauagacaaagaggcaa | 10927 |
356 | gaaagguaaaaauaguaaa | 10915 | 435 | gacaaagaggcaagaaaaa | 10928 |
375 | ggggaagaguugcaaaugu | 10916 | 444 | gcaagaaaaacaaugguga | 10929 |
376 | gggaagaguugcaaauguu | 10917 | 454 | caauggugacuuugcuaaa | 10931 |
377 | ggaagaguugcaaauguua | 10918 | 467 | gcuaaaggaaucaucaggu | 10933 |
381 | gaguugcaaauguuagaua | 10919 | 468 | cuaaaggaaucaucaggua | 10934 |
383 | guugcaaauguuagauaua | 10920 | 481 | cagguaacaucccacaaaa | 10935 |
386 | gcaaauguuagauauacau | 10921 | 506 | gccuucagcaccagacaca | 10938 |
396 | gauauacauggaguggaaa | 10922 | 513 | gcaccagacacaccaauaa | 10939 |
410 | ggaaaagaguuggguagaa | 10923 | 514 | caccagacacaccaauaau | 10940 |
416 | gaguuggguagaagaaaua | 10924 | 516 | ccagacacaccaauaauuu | 10941 |
421 | ggguagaagaaauagacaa | 10925 | 541 | guguaggugcuuuaauauu | 10942 |
422 | gguagaagaaauagacaaa | 10926 | 547 | gugcuuuaauauucacuaa | 10943 |
429 | gaaauagacaaagaggcaa | 10927 | 562 | cuaaacuagcaucaacaau | 10944 |
435 | gacaaagaggcaagaaaaa | 10928 | 588 | ggacuagagacuacaguua | 10945 |
444 | gcaagaaaaacaaugguga | 10929 | 663 | ccgaagauugcuagaucuu | 10951 |
448 | gaaaaacaauggugacuuu | 10930 | 676 | gaucuuucuaugaacuauu | 10952 |
454 | caauggugacuuugcuaaa | 10931 | 705 | guguauuacaggagucuau | 10953 |
459 | gugacuuugcuaaaggaau | 10932 | 715 | ggagucuauucauugagua | 10954 |
467 | gcuaaaggaaucaucaggu | 10933 | 716 | gagucuauucauugaguau | 10955 |
468 | cuaaaggaucaaucaggua | 10934 | 735 | gggaaagcuuuaggcucau | 10956 |
481 | c agguaacauccacaaaa | 10935 | 741 | gcuuuaggcucaucuucaa | 10957 |
492 | ccacaaaaccagaggccuu | 10936 | 747 | ggcucaucuucaacaggaa | 10958 |
500 | ccagaggccuucagcacca | 10937 | 763 | gaagcaaagcagaaaguuu | 10959 |
506 | gccuucagcaccagacaca | 10938 | 774 | gaaaguuuguuuguaaaua | 10963 |
513 | gcaccagacacaccaauaa | 10939 | 778 | guuuguuuguaaauauauu | 10964 |
514 | caccagacacaccaauaau | 10940 | 816 | ggucaaacaaugcuaaggu | 10966 |
516 | ccagacacaccaauaauuu | 10941 | 836 | gggugucauugccagauca | 10967 |
541 | guguaggugcuuuaauauu | 10942 | 846 | gccagaucaucuaacaaca | 10968 |
547 | gugcuuuaauauucacuaa | 10943 | 847 | ccagaucaucuaacaacau | 10969 |
562 | cuaaacuagcaucaacaau | 10944 | 850 | gaucaucuaacaacauaau | 10971 |
588 | ggacuagagacuacaguua | 10945 | 860 | caacauaaugcuaggacau | 10972 |
623 | gcuaagugaugcgcucaaa | 10946 | 883 | cugugcaagcugaauugaa | 10973 |
628 | gugaugcgcucaaaagaua | 10947 | 891 | gcugaauugaagcaaguua | 10974 |
638 | caaaagauacccuagggua | 10948 | 953 | gcuuuuacaucuaagacaa | 10979 |
652 | ggguagauauaccgaagau | 10949 | 1038 | gcuucaggucuagguauaa | 10980 |
657 | gauauaccgaagauugcua | 10950 | 1091 | gcuauuuucugcagcagaa | 10982 |
663 | ccgaagauugcuagaucuu | 10951 | 1104 | gcagaaaguuaugccagaa | 10983 |
676 | gaucuuucuaugaacuauu | 10952 | 1116 | gccagaagcuuaaaagaaa | 10984 |
705 | guguauuacaggagucuau | 10953 | 1123 | gcuuaaaagaaagcaacaa | 10985 |
715 | ggagucuauucauugagua | 10954 | 1163 | gcucacagacgaagaaaaa | 10986 |
716 | gagucuuuucauugaguau | 10955 | |||
735 | gggaaagcuuuaggcucau | 10956 | |||
741 | gcuuuaggcucaucuucaa | 10957 | |||
747 | ggcucaucuucaacaggaa | 10958 | |||
763 | gaagcaaagcagaaaguuu | 10959 | |||
767 | caaagcagaaaguuuguuu | 10960 | |||
771 | gcagaaaguuuguuuguaa | 10961 | |||
772 | cagaaaguuuguuuguaaa | 10962 | |||
774 | gaaaguuuguuuguaaaua | 10963 | |||
778 | guuuguuuguaaauauauu | 10964 | |||
804 | gcuuauggagccggucaaa | 10965 | |||
816 | ggucaaacaaugcuaaggu | 10966 | |||
836 | gggugucauugccagauca | 10967 | |||
846 | gccagaucaucuaacaaca | 10968 | |||
847 | ccagaucaucuaacaacau | 10969 | |||
848 | cagaucaucuaacaacaua | 10970 | |||
850 | gaucaucuaacaacauaau | 10971 | |||
860 | caacauaaugcuaggacau | 10972 | |||
883 | cugugcaagcugaauugaa | 10973 | |||
891 | gcugaauugaagcaaguua | 10974 | |||
899 | gaagcaaguuacagagguu | 10975 | |||
906 | guuacagaggguuuaugauu | 10976 | |||
914 | gguuuaugauuuggugaga | 10977 | |||
939 | gguccugaaucugggcuuu | 10978 | |||
953 | gcuuuuacaucuaagacaa | 10979 | |||
1038 | gcuucaggucuagguauaa | 10980 | |||
1044 | ggucuagguauaaucggaa | 10981 | |||
1091 | gcuauuuucugcagcagaa | 10982 | |||
1104 | gcagaaaguuaugccagaa | 10983 | |||
1116 | gccagaagcuuaaaagaaa | 10984 | |||
1123 | gcuuaaaagaaagcaacaa | 10985 | |||
1163 | gcucacagacgaagaaaaa | 10986 |
体外分析
不同浓度siRNA电穿孔之后或之前合适的时间点,以预先确定的感染复数(MOI)的hMPV感染猴肾上皮细胞系LLC-MK2细胞。Dharmacon的Sicontrol用作对照siRNA。在合适的时间点收集细胞,分离总RNA。Oligo dT用作引物由反转录合成cDNA的第一条链。如Boivin等(1)所述的方法以病毒靶基因特异性引物进行实时PCR以确定siRNA的沉默效力。还使用实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。如Tripp等(2)所述方法以病毒噬菌斑检测来确定病毒滴度。
体内分析
麻醉的Balb/c小鼠鼻内给药2-10mg/kg剂量的修饰或未修饰siRNA,带有或不带有制品。Dharmacon的Sicontrol以同样剂量给药。合适的时间点后以106人类偏肺病毒感染动物。病毒感染后不同时间点杀死动物,收集肺组织。如体外检测中所述的,对N基因进行实时PCR以确定病毒复制(1)。还使用肺匀浆来通过LLC-MK2细胞的噬菌斑检测(16)确定病毒滴度。为了研究siRNA的治疗价值,首先以hMPV感染动物然后在最佳时间点给药hMPV特异性siRNA和对照siRNA。由上述方法监控肺组织中的病毒感染。
实施例23.产生和测试衍生自RSV病毒的siRNA
使用上述方法或从公众可获得的序列鉴别RSV病毒核蛋白。使用上述方法从编码RSV病毒核蛋白的核酸中鉴别siRNA。
表26列出了作为siRNA人类呼吸道合胞病毒核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表26所列每条序列可获得大量有义和反义siRNA。
表26.人类呼吸道合胞病毒(登记号NC 001781) | |||||
5’核苷酸位置 | 靶序列 | SEQIDNO | 保守靶序列 | SEQIDNO | |
1246 | ccaauuaugaugugcaaaa | 10987 | 1246 | ccaauuaugaugugcaaaa | 10987 |
1259 | gcaaaaacaccuaaacaaa | 10988 | 1289 | gcuauuaaucacugaagau | 10989 |
1289 | gcuauuaaucacugaagau | 10989 | 1326 | ggauuaauagguauguuau | 10991 |
1313 | ucauaaauucacaggauua | 10990 | 1347 | gcuauguccagguuaggaa | 10992 |
1326 | ggauuaauagguauguuau | 10991 | 1362 | ggaagggaagacacuauaa | 10993 |
1347 | gcuauguccagguuaggaa | 10992 | 1385 | acuuaaagaugcuggauau | 10996 |
1362 | ggaagggaagacacuauaa | 10993 | 1398 | ggauaucauguuaaagcua | 10997 |
1366 | gggaagacacuauaaagau | 10994 | 1419 | ggaguagauauaacaacau | 11000 |
1367 | ggaagacacuauaaagaua | 10995 | 1440 | cgucaagauauaaauggaa | 11001 |
1385 | acuuaaagaugcuggauau | 10996 | 1460 | ggaaaugaaauucgaagua | 11004 |
1398 | ggauaucauguuaaagcua | 10997 | 1540 | ccuacaaaaaaaugcuaaa | 11005 |
1406 | uguuaaagcuaauggagua | 10998 | 1566 | ggagaaguggcuccagaau | 11008 |
1413 | gcuaauggaguagauauaa | 10999 | 1578 | ccagaauauaggcaugauu | 11009 |
1419 | ggaguagauauaacaacau | 11000 | 1599 | ccagacugugggaugauaa | 11010 |
1440 | cgucaagauauaaauggaa | 11001 | 1632 | gcacuuguaauaaccaaau | 11012 |
1445 | agauauaaauggaaaggaa | 11002 | 1659 | ggagacagaucaggucuua | 11013 |
1446 | gauauaaauggaaaggaaa | 11003 | 1695 | gcaaacaaugucuuaaaaa | 11016 |
1460 | ggaaaugaaauucgaagua | 11004 | 1811 | gcacuuuggcauugcacaa | 11019 |
1540 | ccuacaaaaaaaugcuaaa | 11005 | 1845 | gguaguagaguugaaggaa | 11020 |
1553 | gcuaaaagagaugggagaa | 11006 | 1929 | gccaaaucguaaaaaaaua | 11023 |
1565 | gggagaaguggcuccagaa | 11007 | 1930 | ccaaaucuguaaaaaauau | 11024 |
1566 | ggagaaguggcuccagaau | 11008 | 1962 | gcuaguguccaggcagaaa | 11025 |
1578 | ccagaauauaggcaugauu | 11009 | 2121 | gcagcaggucuaggcauaa | 11028 |
1599 | ccagacugugggaugauaa | 11010 | 2132 | aggcauaaugggagaguau | 11029 |
1609 | ggaugauaauacuguguau | 11011 | 2199 | gcagagcaacucaagaaaa | 11031 |
1632 | gcacuuguaauaaccaaau | 11012 | 2223 | guaauaaacuacaguguau | 11033 |
1659 | ggagacagaucaggucuua | 11013 | 2288 | cccuaaagaagaugaugua | 11035 |
1680 | gcaguaauuaggagggcaa | 11014 | |||
1693 | gggcaaacaaugucuuaaa | 11015 | |||
1695 | gcaaacaaugucuuaaaaa | 11016 | |||
1734 | ggucucauaccaaaggaua | 11017 | |||
1748 | ggauauagcuaacaguuuu | 11018 | |||
1811 | gcacuuuggcauugcacaa | 11019 | |||
1845 | gguaguagaguugaaggaa | 11020 | |||
1899 | gggcaaguaaugcuaagau | 11021 | |||
1910 | gcuaagauggggaguuuua | 11022 | |||
1929 | gccaaaucuguaaaaaaua | 11023 | |||
1930 | ccaaaucuguaaaaaauau | 11024 | |||
1962 | gcuaguguccaggcagaaa | 11025 | |||
1985 | gcaaguuguggaagucuau | 11026 | |||
2064 | gcaucauugcugucauuaa | 11027 | |||
2121 | gcagcaggucuaggcauaa | 11028 | |||
2132 | aggcauaaugggagaguau | 11029 |
2160 | ccaagaaaccaggaucuuu | 11030 | |||
2199 | gcagagcaacucaaagaaa | 11031 | |||
2210 | caaagaaaauggaguaaua | 11032 | |||
2223 | guaauaaacuacaguguau | 11033 | |||
2269 | ccauaaagaaucaacucaa | 11034 | |||
2288 | cccuaaagaagaugaugua | 11035 | |||
2309 | gcuuaaguuaacaaaaaa | 11036 |
体外分析
以不同浓度的siRNA转染肺上皮细胞系A549细胞(3)。Dharmacon的Sicontrol用作对照siRNA。Lipofectamine 2000用作转染剂,并根据制造商的说明。4小时后,以hRSV感染转染的A549细胞。在合适的时间点收集细胞,分离RNA。如上所述的进行RT和实时PCR。将siRNA转染细胞和RSV感染细胞的培养上清液成倍稀释,稀释物用于感染A549细胞以在病毒噬菌斑检测(4)中确定病毒滴度。A549细胞也首先感染RSV,在合适时间点转染不同浓度的siRNA。在合适时间点收集细胞,分离RNA。如上所述以基因特异性引物进行RT和实时PCR以确定siRNA的沉默效力。使用实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。
体内分析
异氟醚麻醉的Balb/c小鼠鼻内给药2mg/kg的PBS中的NP特异性、RSV特异性siRNA,每只小鼠50ul。Dharmacon的PBS中的Sicontrol以同样剂量给药。感染4小时后收集小鼠肺并匀浆。肺匀浆的10倍系列稀释物用于感染A549细胞。感染3至5天后监控细胞病变效应(4)。50%的细胞显示细胞病变效应的稀释物确定为TCID50。为了研究siRNA的治疗价值,首先以RSV感染动物然后在最佳时间点给药RSV特异性siRNA和对照siRNA。由上述方法监控肺组织中的病毒感染。
实施例24.产生和测试衍生自冠状病毒的siRNA
使用上述方法或从公众可获得的序列鉴别冠状病毒核蛋白。使用上述方法从编码冠状病毒核蛋白的核酸中鉴别siRNA。
表27列出了作为siRNA人类冠状病毒核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表27所列每条序列可获得大量有义和反义siRNA。
表27.人类冠状病毒(登记号AY391777) | |||||
5’核苷酸位置 | 靶序列 | SEQ IDNO | 5’核苷酸位置 | 保守靶序列 | SEQIDNO |
29119 | gguaagcaauccaguagua | 11037 | 29119 | gguaagcaauccaguagua | 11037 |
29259 | gcaaccaucaggagggaau | 11038 | 29259 | gcaaccaucaggagggaau | 11038 |
29305 | ggaauuacucaguuucaaa | 11039 | 29305 | ggaauuacucaguuucaaa | 11039 |
29325 | gggaaaggaguuugaguuu | 11040 | 29325 | gggaaaggaguuugaguuu | 11040 |
29642 | cgguacucccucaggguua | 11041 | 29642 | cgguacucccucaggguua | 11041 |
29686 | gcuccuaauuccagaucua | 11042 | 29686 | gcuccuaauuccagaucua | 11042 |
29879 | ccaaagaagucagacagaa | 11043 | 29879 | ccaaagaagucagacagaa | 11043 |
29880 | caaagaagucagacagaaa | 11044 | 29880 | caaagaagucagacagaaa | 11044 |
以不同浓度的siRNA转染肺上皮细胞系A549细胞。Dharmacon的Sicontrol用作对照siRNA。Lipofectamine 2000用作转染剂,并根据制造商的说明。4小时后,以冠状病毒感染转染的A549细胞。在合适的时间点收集细胞,分离RNA。如上所述的进行RT和实时PCR(8)。收集siRNA转染细胞和RSV感染细胞的培养上清液。将上清液的2-倍稀释物与0.05%鸡红细胞(9)混合,进行血凝素检测。A549细胞也首先感染人类冠状病毒,在合适时间点转染不同浓度的siRNA。在最优时间点收集细胞和上清液。从细胞分离RNA,如上所述以基因特异性引物进行RT和实时PCR以确定siRNA的沉默效力。使用如上所述的血凝素检测和实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。
实施例25.产生和测试衍生自西尼罗病毒的siRNA
使用上述方法或从公众可获得的序列鉴别西尼罗病毒核蛋白。使用上述方法从编码西尼罗病毒核蛋白的核酸中鉴别siRNA。
表28列出了作为siRNA人类西尼罗病毒核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表28所列每条序列可获得大量有义和反义siRNA。
表28.西尼罗病毒(登记号AY842931) | |||||
5’核苷酸位置 | 靶序列 | SEQ IDNO | 5’核苷酸位置 | 保守靶序列 | SEQ IDNO |
98 | cuauguugagccugaucga | 11045 | 98 | cuauguugagccugaucga | 11045 |
158 | ucuucagguucacagcaau | 11046 | 158 | ucuucagguucacagcaau | 11046 |
162 | cagguucacagcaauugcu | 11047 | 162 | cagguucacagcaauugcu | 11047 |
192 | agugcuggaucgauggaga | 11048 | 199 | gaucgauggagagguguga | 11049 |
199 | gaucgauggagagguguga | 11049 | 203 | gauggagaggugugaacaa | 11050 |
203 | gauggagaggugugaacaa | 11050 | 206 | ggagaggugugaacaaaca | 11051 |
206 | ggagaggugugaacaaaca | 11051 | 219 | caaacaaacagcgaugaaa | 11052 |
219 | caaacaaacagcgaugaaa | 11052 | 220 | aaacaaacagcgaugaaac | 11053 |
220 | aaacaaacagcgaugaaac | 11053 | 221 | aacaaacagcgaugaaaca | 11054 |
221 | aacaaacagcgaugaaaca | 11054 | 223 | caaacagcgaugaaacacc | 11055 |
223 | caaacagcgaugaaacacc | 11055 | 224 | aaacagcgaugaaacaccu | 11056 |
224 | aaacagcgaugaaacaccu | 11056 | 227 | cagcgaugaaacaccuucu | 11057 |
227 | cagcgaugaaacaccuucu | 11057 | 229 | gcgaugaaacaccuucuga | 11058 |
229 | gcgaugaaacaccuucuga | 11058 | 230 | cgaugaaacaccuucugag | 11059 |
230 | cgaugaaacaccuucugag | 11059 | 231 | gaugaaacaccuucugagu | 11060 |
231 | gaugaaacaccuucugagu | 11060 | 238 | caccuucugaguuuuaaga | 11061 |
238 | caccuucugaguuuuaaga | 11061 | 256 | aaggaacuagggaccuuga | 11063 |
252 | uaagaaggaacuagggacc | 11062 | 259 | gaacuagggaccuugacca | 11064 |
256 | aaggaacuagggaccuuga | 11063 | 265 | gggaccuugaccagugcua | 11065 |
259 | gaacuagggaccuugacca | 11064 | 266 | ggaccuugaccagugcuau | 11066 |
265 | gggaccuugaccagugcua | 11065 | 270 | cuugaccagugcuaucaau | 11067 |
266 | ggaccuugaccagugcuau | 11066 | 289 | cggcggagcucaaaacaaa | 11068 |
270 | cuugaccagugcuaucaau | 11067 | 292 | cggagcucaaaacaaaaga | 11069 |
289 | cggcggagcucaaaacaaa | 11068 | 293 | ggagcucaaaacaaaagaa | 11070 |
292 | cggagcucaaaacaaaaga | 11069 | 294 | gagcucaaaacaaaagaaa | 11071 |
293 | ggagcucaaaacaaaagaa | 11070 | |||
294 | gagcucaaaacaaaagaaa | 11071 |
体外分析
对病毒母液生产,以ATCC或CDC获得的西尼罗病毒(WNV)在0.1-1的感染复数感染Vero细胞,并培养在补充2%FBS的培养基中。感染后72-96小时收集培养上清液并澄清,此时50-70%的细胞表现细胞病变效应(CPE)。母液中感染性病毒的浓度通过在96孔板中Vero细胞上滴定而确定,并计算为ID50/ml。1ID50等于1感染单位(i.u.)。
为了发现最有效的siRNA序列,首先以不同浓度许多siRNA转染/电穿孔Vero细胞或任何其它合适细胞系,如幼仓鼠肾(BHK)细胞系(BHK-21)。Dharmacon的Sicontrol用作对照siRNA。在转染/电穿孔后合适的时间点,以优化moi的西尼罗病毒感染细胞。感染后不同时间点收集细胞并收集上清液。为了评价siRNA对病毒感染/复制的效力,从细胞分离RNA,并反转录生成cDNA的第一条链。以N基因特异性引物对WNVN基因进行实时PCR(10),扩增产物与对照比较以评价siRNA的效力。使用出版的实验步骤(11)在病毒滴度检测中测试培养上清液。Vero或BHK-21细胞也首先感染WNV,在合适时间点转染不同浓度的siRNA。在合适时间点收集细胞,分离RNA。如上所述以基因特异性引物进行RT和实时PCR以确定siRNA的沉默效力。使用实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。还使用上述方法检测病毒滴度。
体内分析
BALB/c小鼠已经显示为有效支持WNV复制。我们计划使用此株系来评价siRNA在细胞培养检测中的效力。具体地,对小鼠静脉给药2-10mg/kg剂量的修饰或未修饰siRNA,带有或不带有制品。Dharmacon的Sicontrol以同样剂量给药。合适的时间点后以WNV感染动物。在合适时间点从这些动物收集脑组织和血,对Vero或BHK-21细胞(11)噬菌斑滴定来确定血和脑中的病毒滴度。除了这个预防方法,我们还计划做治疗模型,其中首先以病毒感染动物,然后给予siRNA治疗。以如上所述的方法监控血和脑组织中的病毒感染。
实施例26.产生和测试衍生自登革热病毒的siRNA
使用上述方法或从公众可获得的序列鉴别登革热病毒核蛋白。使用上述方法从编码登革热病毒核蛋白的核酸中鉴别siRNA。
表29列出了作为siRNA登革热病毒核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表29所列每条序列可获得大量有义和反义siRNA。
表29.登革热病毒(登记号NC 001474) | |||||
5’核苷酸位置 | 靶序列 | SEQ ID NO | 5’核苷酸位置 | 保守靶序列 | SEQ IDNO |
96 | gaugaaugaccaacggaaa | 11072 | 96 | gaugaaugaccaacggaaa | 11072 |
109 | cggaaaaaggcgagaaaca | 11073 | 109 | cggaaaaaggcgagaaaca | 11073 |
119 | cgagaaacacgccuuucaa | 11074 | 119 | cgagaaacacgccuuucaa | 11074 |
150 | cgagagaaaccgcguguca | 11075 | 170 | cuguacaacaguugacaaa | 11077 |
159 | ccgcgugucaacuguacaa | 11076 | 210 | gcagggacgaggaccacua | 11078 |
170 | cuguacaacaguugacaaa | 11077 | 213 | gggacgaggaccacuaaaa | 11079 |
210 | gcagggacgaggaccacua | 11078 | 273 | cccaccaacagcagggaua | 11080 |
213 | gggacgaggaccacuaaaa | 11079 | 274 | ccaccaacagcagggauau | 11081 |
273 | cccaccaacagcagggaua | 11080 | 277 | ccaacagcagggauauuaa | 11082 |
274 | ccaccaacagcagggauau | 11081 | 303 | gggaacaauuaaaaaauca | 11083 |
277 | ccaacagcagggauauuaa | 11082 | 304 | ggaacaauuaaaaaaucaa | 1108 |
303 | gggaacaauuaaaaaauca | 11083 | 350 | ggaaagagauuggaaggau | 11085 |
304 | ggaacaauuaaaaaaucaa | 11084 | 404 | gcaugaucaucaugcugau | 11086 |
350 | ggaaagagauuggaaggau | 11085 | |||
404 | gcaugaucaucaugcugau | 11086 |
体外分析
在C6/36蚊子细胞系中繁殖(DEN1-4)。为了测试siRNA沉默基因的效力,以不同浓度的许多siRNA转染/电穿孔Vero细胞。Dharmacon的Sicontrol用作对照siRNA。在转染/电穿孔后合适的时间点,以优化moi的登革热病毒(DEN1-4)感染细胞。感染后不同时间点收集细胞并收集上清液。为了评价siRNA对病毒感染/复制的效力,从细胞分离RNA,并反转录生成cDNA的第一条链。以基因特异性引物对登革热核衣壳/衣壳基因进行实时PCR,扩增产物与非siRNA转染感染的对照比较以评价siRNA的效力(1)。实时PCR中还使用病毒非靶基因特异性引物(如preM)来测量病毒复制的减少。使用Vero或BHK-21细胞(12)在病毒滴度检测中测试培养上清液以确定病毒滴度。还以上述方法测试了DEN感染Vero细胞后这些siRNA在病毒感染/复制中的效力。
体内分析
对体内评价siRNA,使用显示为对登革热2型(DEN2)感染更易感的A/J小鼠。对小鼠静脉给药2-10mg/kg剂量的修饰或未修饰siRNA,带有或不带有制品。Dharmacon的Sicontrol以同样剂量给药。合适的时间点后以DEN-2病毒静脉感染动物(1×108p.f.u./小鼠)。以来自血提取的RNA的登革病毒特异性引物进行实时PCR分析来检测siRNA对登革热-2的效力(16)。还使用Vero细胞(12)对这些样品进行病毒噬菌斑检测。除了这个预防方法,我们还计划做治疗模型,其中首先以病毒感染动物,然后给予siRNA治疗。以如上所述的方法监控脑组织中的病毒感染。
实施例27.产生和测试衍生自鼻病毒的siRNA
使用上述方法或从公众可获得的序列鉴别鼻病毒核蛋白。使用上述方法从编码鼻病毒核蛋白的核酸中鉴别siRNA。
表30列出了作为siRNA鼻病毒-16核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3’突出端。因此,本领域技术人员将明白,从表30所列每条序列可获得大量有义和反义siRNA。
表30.鼻病毒-16(登记号L24917(衣壳)) | |||||
5’核苷酸位置 | 靶序列 | SEQ IDNO | 5’核苷酸位置 | 保守靶序列 | SEQ IDNO |
630 | gcgcucaaguaucuagaca | 11087 | 630 | gcgcucaaguaucuagaca | 11087 |
632 | gcucaaguaucuagacaga | 11088 | 632 | gcucaaguaucuagacaga | 11088 |
656 | gguacgcacucaacacaaa | 11089 | 656 | gguacgcacucaacacaaa | 11089 |
669 | cacaaaauaugguaucaaa | 11090 | 689 | ggauccagccucaauuauu | 11091 |
689 | ggauccagccucaauuauu | 11091 | 697 | ccucaauuauuuuaacauu | 11092 |
697 | ccucaauuauuuuaacauu | 11092 | 840 | guguagaagcuuguggaua | 11095 |
808 | ggagaaaggcauacccacu | 11093 | 848 | gcuuguggauacucugaua | 11096 |
829 | gcaaucucagugguagaa | 11094 | 852 | guggauacucugauagaau | 11097 |
840 | guguagaagcuuguggaua | 11095 | 854 | ggauacucugauagaauaa | 11098 |
848 | gcuuguggauacucugaua | 11096 | 861 | cugauagaauaauccaaau | 11099 |
852 | guggauacucugauagaau | 11097 | 863 | gauagaauaauccaaauua | 11100 |
854 | ggauacucugauagaauaa | 11098 | 898 | cauaacaucucaagauguu | 11101 |
861 | cugauagaauaaauccaaau | 11099 | 903 | caucucaagauguugcuaa | 11102 |
863 | gauaggaauaauccaaauua | 11100 | 964 | gcaggaugcaacggcuaua | 11105 |
898 | cauaacaucucaagauguu | 11101 | 998 | ccagauacaucaucaaaua | 11106 |
903 | caucucaagauguugcuaa | 11102 | 1079 | ccagaugcucuuaaagaca | 11107 |
918 | cuaaugcagugguugggua | 11103 | 1085 | gcucuuaaagacaugggua | 11108 |
962 | ccgcaggaugcaacggcua | 11104 | 1086 | cucuuaaagacauggguau | 11109 |
964 | gcaggaugcaacggcuaua | 11105 | 1088 | cuuaaagacauggguauuu | 11110 |
998 | ccagauacaucaucaaaua | 11106 | 1099 | ggguauuuuuggugaaaau | 11111 |
1079 | ccagaugcucuuaaagaca | 11107 | 1152 | cagugcacguacagugcaa | 11113 |
1085 | gcucuuaaagacaugggua | 11108 | 1214 | ccagaacaccaguuuagcua | 11117 |
1086 | cucuuaaagacauggguau | 11109 | 1321 | gaaacaaccuagugaugau | 11125 |
1088 | cuuaaagacauggguauuu | 11110 | 1334 | gaugauaauuggcuaaauu | 11126 |
1099 | ggguauuuuuggugaaaau | 11111 | 1345 | gcuaaauuuugaugguaca | 11127 |
1135 | ggguagaagugguuauaca | 11112 | 1358 | gguacauuauugggcaauu | 11128 |
1152 | cagugcacguacagugcaa | 11113 | 1359 | guacauuauugggcaauuu | 11129 |
1183 | ccaccaggguacacuacua | 11114 | 1457 | ccaauggauucuaugguua | 11130 |
1189 | ggguacacuacuagugguu | 11115 | 1483 | caauuggaguuugguaaua | 11132 |
1191 | guacacuacuagugguuau | 11116 | 1657 | gacaacagaugauaugcaa | 11142 |
1214 | ccagaacaccaguuagcua | 11117 | 1703 | ccaacaaaagagaucuuua | 11143 |
1222 | ccaguuagcuacaguaaau | 11118 | 1725 | caggggagguuaagaacuu | 11145 |
1225 | guuagcuacaguaaauaaa | 11119 | 1733 | guuaagaacuugauugaaa | 11146 |
1229 | gcuacaguaaauaaaggua | 11120 | 1748 | gaaaugugucagguggaua | 11147 |
1230 | cuacaguaaauaaagguaa | 11121 | 1760 | guggauacacucauaccaa | 11148 |
1235 | guaaauaagguaauguuua | 11122 | 1916 | gagauagcaaguuacuuua | 11154 |
1245 | guaauguuaaugcagguua | 11123 | 1922 | gcaaguuacuuuacacacu | 11155 |
1300 | ggguacacaaguugaaaau | 11124 | 1941 | ggacagggagccugcgauu | 11156 |
1321 | gaaacaaccuaguggaugau | 11125 | 1954 | gcgauucaguuucauguuu | 11157 |
1334 | gaugauaauuggcuaaauu | 11126 | 1980 | cugcaaacacuaccuuaaa | 11158 |
1345 | gcuaaauuuugaugguaca | 11127 | 2024 | gggauugguaagccuagaa | 11159 |
1358 | gguacauuauugggcaauu | 11128 | 2035 | gccuagaguagaaagggaa | 11161 |
1359 | guacauuauugggcaauuu | 11129 | 2040 | gaaguagaaaggaagcaau | 11162 |
1457 | ccaauggauucuaugguua | 11130 | 2043 | guagaaaggaagcaauguuu | 11163 |
1463 | gauucuaugguuaggcaua | 11131 | 2064 | ggacacacgugguguggga | 11165 |
1483 | caauuggaguuugguaaua | 11132 | 2074 | ggugugggauguagguuua | 11166 |
1495 | gguaauaauaccguuuugu | 11133 | 2122 | gaucagugccagucaguau | 11168 |
1514 | caacuacaaagcaacaaua | 11134 | 2176 | cuacauuacaugcugguau | 11169 |
1517 | cuacaaagcaacaauauau | 11135 | 2289 | gagacacagaccugcacaa | 11171 |
1524 | gcaacaauauauccaacau | 11136 | 2338 | ggaaagauauguagaugaa | 11175 |
1525 | caacaauauauccaacauu | 11137 | 2356 | agucuuaaaugaaguguua | 11176 |
1566 | gcccaaugugugcugaauu | 11138 | 2441 | gaaacaggacauaccaaua | 11178 |
1585 | cucuggagcacgugccaaa | 11139 | 2515 | ggaugaaaugaguguggaa | 11183 |
1610 | gugcaaggucuaccaguau | 11140 | 2516 | gaugaaaugaguguggaaa | 11184 |
1612 | gcaaggucuaccaguauau | 11141 | 2530 | ggaaagcuuccuaggcaga | 11185 |
1657 | gacaacagaugauaugcaa | 11142 | 2629 | gcaagaaauggcacaaauu | 11192 |
1703 | ccaacaaaagagaucuuua | 11143 | 2630 | caagaaauggcacaaauua | 11193 |
1717 | cuuuauaccaggagagguu | 11144 | 2638 | ggcacaaauuagaagaaaa | 11194 |
1725 | caggagagguuaagaacuu | 11145 | 2639 | gcacaaauuagaagaaaau | 11195 |
1733 | guuaagaacuugauugaaa | 11146 | 2675 | gcaagauuugacucugaaa | 11197 |
1748 | gaaaugugucagguggaua | 11147 | 2804 | gcuuggcaaucuggaacaa | 11203 |
1760 | guggauacacucauaccaa | 11148 | 2816 | ggaacaaaugcaucuguau | 11204 |
1762 | ggauacacucauaccaaua | 11149 | 2817 | gaacaaaugcaucuguauu | 11205 |
1842 | caaaauuagcugaagaaau | 11150 | 2881 | gaguauugcaucagcauau | 11206 |
1851 | cugaagaaauuuuugcaau | 11151 | 2892 | cagcauauuacaugtuuua | 11207 |
1853 | gaagaaauuuuugcaauua | 11152 | 2961 | ccaaugacaugggaacuuu | 11210 |
1899 | ccacaacccucauugguga | 11153 | 3033 | ggauauaucacaaagccaa | 11217 |
1916 | gagauagcaaguuacuuua | 11154 | 3034 | gauauaucacaaagccaaa | 11218 |
1922 | gcaaguuacuuuacacacu | 11155 | 3047 | gccaaacacaccaaagcuu | 11219 |
1941 | ggacagggagccugcgauu | 11156 | |||
1954 | gcgauucaguuuuauguuu | 11157 | |||
1980 | cugcaaacacuaccuuaaa | 11158 | |||
2024 | gggauugguaagccuagaa | 11159 | |||
2030 | gguaagccuagaaguagaa | 11160 | |||
2035 | gccuagaaguagaaaggaa | 11161 | |||
2040 | gaaguagaaaggaagcaau | 11162 | |||
2043 | guagaaaggaagcaauguu | 11163 | |||
2050 | ggaagcaauguuagggaca | 11164 | |||
2064 | ggacacacgugguguggga | 11165 | |||
2074 | ggugugggauguagguuua | 11166 | |||
2080 | ggauguagguuuacaaucu | 11167 | |||
2122 | gaucagugccagucaguau | 11168 | |||
2176 | cuacauuacaugcgguuau | 11169 | |||
2232 | cuugcugaguguuguguuu | 11170 | |||
2289 | gagacacagaccugcacaa | 11171 | |||
2302 | gcacaagcaaacaggacca | 11172 | |||
2305 | caagcaaacaggacaaaua | 11173 | |||
2308 | gcaaacaggaccaaaaaca | 11174 | |||
2338 | ggaaagauauguagaugaa | 11175 | |||
2356 | agucuuaaaauugaaguua | 11176 | |||
2382 | ccaauauuaaucagagcca | 11177 | |||
2441 | gaaacaggacauaccaaua | 11178 |
2454 | ccaauaagauacagccaga | 11179 | |||
2467 | gccagaagacacuauagaa | 11180 | |||
2468 | ccagaagacacuauagaaa | 11181 | |||
2495 | gugcaaucuucacagacau | 11182 | |||
2515 | ggaugaaugagugugggaa | 11183 | |||
2516 | gaugaaaugaguguggaaa | 11184 | |||
2530 | ggaaagcuuccuaggcaga | 11184 | |||
2561 | caugaaucaguguuggaua | 11186 | |||
2584 | ggacaauuacaaugaucaa | 11187 | |||
2597 | gaucaaaguuucacuaaau | 11188 | |||
2616 | ggaacauaaaccugcaaga | 11189 | |||
2617 | gaacauaaaccugcaagaa | 11190 | |||
2619 | acauaaaccugcaagaaau | 11191 | |||
2629 | gcaagaaauggcacaaauu | 11192 | |||
2630 | caagaaauggcacaaauua | 11193 | |||
2638 | ggcacaaauuagaagaaaa | 11194 | |||
2639 | gcacaaauuagaagaaaau | 11195 | |||
2649 | gaagaaaauuugaaauguu | 11196 | |||
2675 | gcaagauuugacucugaaa | 11197 | |||
2735 | ggucauauagucaugcaau | 11198 | |||
2736 | gucauauagucaugcaaua | 11199 | |||
2738 | cauauagucaugcaauaua | 11200 | |||
2774 | gcaccuauaccaacaacua | 11201 | |||
2784 | caacaacuagagaugacua | 11202 | |||
2804 | gcuuggcaaucuggaacaa | 11203 | |||
2816 | ggaacaaaugcaucuguau | 11204 | |||
2817 | gaacaaaugcaucuguauu | 11205 | |||
2881 | gaguauugcaucagcauau | 11206 | |||
2892 | cagcauauuacauguuuua | 11207 | |||
2916 | guuaugauggagacacaua | 11208 | |||
2924 | ggagacacauauaaaucca | 11209 | |||
2961 | ccaaugacaugggaacuuu | 11210 | |||
2972 | ggaacuuuguguucgcgua | 11211 | |||
2997 | ccagugagcaauuacacaa | 11212 | |||
2998 | cagugagcaauuacacaaa | 11213 | |||
3004 | gcaauuacacaaagucaaa | 11214 | |||
3010 | acacaaagucaaaguggua | 11215 | |||
3019 | caaagugguaacaaggaua | 11216 | |||
3033 | ggauauaucacaaagccaa | 11217 | |||
3034 | gauauaucacaaaggcaaa | 11218 | |||
3047 | gccaaacacaccaaagcuu | 11219 | |||
3086 | gcuguucaauacucacaua | 11220 | |||
3092 | caauacucacauacacaua | 11221 | |||
3118 | cuacaaauugaguucagaa | 11222 | |||
3121 | caaauugaguucagaagua | 11223 | |||
3151 | ggcuauaagaccuagaaca | 11224 | |||
3152 | gcuauaagaccuagaacaa | 11225 | |||
3153 | cuauaagaccuagaacaaa | 11226 |
3161 | ccuagaacaaaucuaacaa | 11227 | |||
3199 | guaugugcauguugguaau | 11228 | |||
3205 | gcauguugguaaucuaaua | 11229 | |||
3212 | gguaaucaauaauacagaa | 11230 | |||
3213 | guaaucuaauauacagaaa | 11231 |
体外分析
在人类Hela细胞中测试siRNA对鼻病毒感染的效力。Hela细胞生长于补充10%胎牛血清(FBS)和1%Pluronic F-68,带有Earle’s Salt的MEM中。以人类鼻病毒16的母液在200噬菌斑形成单位(PFU)/ml感染细胞。受感染的细胞培育1小时以允许病毒吸附至细胞。培育后以siRNA分子转染细胞。Dharmacon的Sicontrol用作对照siRNA。转染后在合适的时间点收集细胞,收集上清液,以实时PCR检测病毒复制(13)。使用实时PCR中的病毒非靶基因特异性引物(如聚合酶)来测量病毒复制的减少。上清液用于对Hela细胞单层进行病毒噬菌斑检测(14)。我们还计划根据上述方法首先转染细胞,然后以人类鼻病毒16感染以研究其对抑制病毒复制的效力。
实施例28.产生和测试衍生自轮状病毒的siRNA
使用上述方法或从公众可获得的序列鉴别轮状病毒核蛋白。使用上述方法从编码轮状病毒核蛋白的核酸中鉴别siRNA。
表31列出了作为siRNA轮状病毒(VP6)核蛋白靶序列的19-核苷酸区。所提供的19核苷酸区作为设计多种siRNA分子的有义链是有用的,该分子任选地在有义链和反义链中的任一条或两条都具有不同的3,突出端。因此,本领域技术人员将明白,从表31所列每条序列可获得大量有义和反义siRNA。
表31.轮状病毒VP6 | |||||
5’核苷酸位置 | 靶序列 | SEQIDNO | 5’核苷酸位置 | 保守靶序列 | SEQ IDNO |
20 | cgacauggagguucuguac | 11232 | 54 | cuuaaagaugcuagggaca | 11233 |
54 | cuuaaagaugcuagggaca | 11233 | 163 | agacuggaggaauugguaa | 11234 |
163 | agacuggaggaauugguaa | 11234 | 567 | cuuaaugcuggaucagaaa | 11242 |
168 | ggaggaauugguaauuuac | 11235 | 588 | caaguggcuggauuugacu | 11243 |
213 | ggucuauuagguacaacac | 11236 | 975 | gcaacaguuggacuuacau | 11250 |
236 | gaacuuggaugcuaauuau | 11237 | 1137 | acuaacuauucaccaucua | 11255 |
258 | gagaaugcaagaacuauaa | 11238 | 1182 | acgguagcuuccauuagaa | 11257 |
314 | ggaugaaauggcaagagaa | 11239 | 1283 | cuucaaguaaggacaugau | 11260 |
315 | gaugaaauggcaagagaau | 11240 | |||
556 | gaaccauguggcuuaaugc | 11241 | |||
567 | cuuaaugcuggaucagaaa | 11242 | |||
588 | caaguggcuggauuugacu | 11243 | |||
604 | acuacucaugcgccauaaa | 11244 | |||
605 | cuacucaugcgccauaaau | 11245 | |||
631 | cgaacauacagcaauuuga | 11246 | |||
846 | gcuagauuugguacuauca | 11247 | |||
856 | cuuaaagaugcuagggaca | 11233 | |||
903 | uugaugcguccaccuaaua | 11248 | |||
904 | ugaugcguccaccuaauau | 11249 | |||
975 | gcaacaguuggacuuacau | 11250 | |||
981 | guuggacuuacauuacgua | 11251 | |||
1064 | cgcggugcgucaagaauau | 11252 | |||
1113 | ggcaugaauuggacugaau | 11253 | |||
1114 | gcaugaauuggacugaauu | 11254 | |||
1137 | acuaacuauucaccaucua | 11255 | |||
1181 | cacgguagcuuccauuaga | 11256 | |||
1182 | acgguagcuuccauuagaa | 11257 | |||
1192 | ccauuagaagcauguugau | 11258 | |||
1242 | caaucuuaguuagcaugua | 11259 | |||
1283 | cuucaaguaaggacaugau | 11260 |
体外分析
恒河猴肾细胞系MA104用于在组织培养中繁殖病毒并制备大的病毒母液。以各种浓度的不同siRNA转染之前或之后,优化剂量的病毒感染MA104细胞。Dharmacon的Sicontrol用作对照siRNA。转染后在合适的时间点收集细胞,以两次冷冻-解冻循环裂解,裂解物以10ug/ml的胰岛素在37℃处理30分钟。如Pando等所述的免疫过氧化物酶焦点检测来确定病毒制品的感染效价(15)。
在轮状病毒感染的小鼠模型中评价siRNA对轮状病毒体内复制的效力。对小鼠静脉给药2-10mg/kg剂量的修饰或未修饰siRNA,带有或不带有制品。Dharmacon的Sicontrol以同样剂量给药。在给药siRNA之前或之后,口饲给予小鼠优化剂量的轮状病毒。在合适的时间点,例如病毒接种2天后,对每只小鼠的末端结肠检测亮黄色液体成分的存在,这是轮状病毒-诱导腹泻的特征,并收集完整肠道以经由酶免疫检测或RT-PCR对轮状病毒抗原定量。
实施例29.体外siRNA介导的人类鼻病毒复制的抑制
本实施例证明本发明的示例性siRNA分子在体外有效抑制人类鼻病毒(HRV)的复制。筛选了33种siRNA(序列见表32)抑制大或小ATCC(美国典型培养物保藏中心)HRV的能力。被选择以靶向HRV的33siRNA代表HRV基因组的“保守”区。通过分析可得的Genbank HRV核苷酸序列并由比对推断这些序列中的“保守”区而选择这些siRNA。最初以33siRNA中的一种转染Ohio Hela-I细胞(OH-I细胞),然后感染两种不同人类鼻病毒血清型中的一种而进行筛选。以TICD50(组织培养感染剂量)检测来测量病毒产率的减少,该检测统计活病毒。TICD50值的减少表示活病毒群体减少,以及病毒复制的减少。在本实施例中,TICD50大的减少表示更有效抑制病毒复制的siRNA。
表32.靶向人类鼻病毒的33siRNA的核苷酸序列
病毒靶序列中siRNA的5’核苷酸位置 | siRNA核苷酸序列 | HRV靶序列 | |
632 | gcucaaguaucuagacaga | (SEQ ID NO:11088) | VP4 |
840 | guguagaagcuuguggaua | (SEQ ID NO:11095) | VP2 |
1079 | ccagaugcucuuaaagaca | (SEQ ID NO:11107) | VP2 |
1085 | gcucuuaaagacaugggua | (SEQ ID NO:11108) | VP2 |
1086 | cucuuaaagacauggguau | (SEQ ID NO:11109) | VP2 |
1088 | cuuaaagacauggguauuu | (SEQ ID NO:11110) | VP2 |
1099 | ggguauuuuuggugaaaau | (SEQ ID NO:11111) | VP2 |
2639 | gcacaaauuagaagaaaau | (SEQ ID NO:11195) | VP1 |
2675 | gcaagauuugacucugaaa | (SEQ ID NO:11197) | VP1 |
2676 | caagauuugacucugaaau | (SEQ ID NO:11261) | VP1 |
3033 | ggauauaucacaaagccaa | (SEQ ID NO:11217) | VP1 |
3034 | gauauaucaacaagccaaa | (SEQ ID NO:11218) | VP1 |
3047 | gccaaacacaccaaagcuu | (SEQ ID NO:11219) | VP1 |
4231 | gaagagaagugaaccugua | (SEQ ID NO:11262) | P2-C |
4356 | cuaaauuauuugaugguua | (SEQ ID NO:11263) | P2-C |
6344 | ccagaaaccuuuuggucua | (SEQ ID NO:11264) | Pol |
6390 | gcaucauggcuuuugauua | (SEQ ID NO:11265) | Pol |
174 | cucuuuuuucaaaauacaa | (SEQ ID NO:11266) | Pol |
178 | uuuuucaaaauacaaaggu | (SEQ ID NO:11267) | Pol |
181 | uucaaaauacaaagguaac | (SEQ ID NO:11268) | Pol |
627 | gugcaguuggaugugaucc | (SEQ ID NO:11269) | Pol |
950 | gauuuagauaaacuuaaaa | (SEQ ID NO:11270) | Pol |
951 | auuuagauaaacuuaaaau | (SEQ ID NO:11271) | Pol |
1196 | gaguccauuagauggacaa | (SEQ ID NO:11272) | Pol |
1197 | aguccauuagauggacaaa | (SEQ ID NO:11273) | Pol |
gaauguggcuaaccuuaaa | (SEQ ID NO:11274) | 5’UTR | |
gaaugcggcuaaccuuaaa | (SEQ ID NO:11275) | 5’UTR | |
gaauguggcuaauccuaaa | (SEQ ID NO:11276) | 5’UTR | |
cugaauguggcuaaccuua | (SEQ ID NO:11277) | 5’UTR | |
ugaauguggcuaaccuuaa | (SEQ ID NO:11278) | 5’UTR | |
gaccaacuacuuugggugu | (SEQ ID NO:11279) | 5’UTR | |
ggaccaacuacuuugggug | (SEQ ID NO:11280) | 5’UTR | |
gggaccaacuacuuugggu | (SEQ ID NO:11281) | 5’UTR |
对该研究,测试了两种HRV血清型:HRV16型和HRV1A型,HRV16型属于大受体组,该组包括90%的101个HRV血清型并使用ICAM-1细胞表面受体以进入细胞,HRV1A型属于小受体组并使用低密度脂蛋白受体超家族的几个成员以进入细胞。评价了33siRNA对两种鼻病毒血清型HRV16型和HRV1A型病毒产率的抑制效应。所有siRNA构建体都在使用前以5pmol/μl的浓度贮存于-70℃。本实施例中,普来可那立和ruprintrivir用作阳性对照,已知它们能有效抑制病毒复制。普来可那立以1μg或10μg的浓度施用,而ruprintrivir以0.1μg的浓度施用。DharmaconTM的Sicontrol用作阴性对照siRNA。还进行无siRNA转染的病毒感染,作为对照(标为“病毒对照1”、“病毒对照2”等等)。
最初进行对照试验以优化转染步骤(即,细胞数目和伴随siRNA的LipofectamineTM2000(Invitrogen)浓度)和感染步骤(即,LipofectamineTM2000对鼻病毒复制的影响)。为了优化转染步骤,对两个24-孔板上的孔接种75,000或100,000 OH-I细胞/孔。确定了各种浓度LipofectamineTM 2000(1μl/孔、1.4μl/孔、或1.8μl/孔)对阳性siRNA对照降解靶转录子效力的负向影响(沉默程度)。还使用了阴性siRNA对照。转染后从细胞提取RNA,进行RT-PCR。还使用实时PCR以确定接种75,000和100,000 OH-I细胞/孔的两个24-孔板在转染期间的沉默程度。如预期的,该结果表示较少细胞数目的发生较多沉默。因此,本实施例中的转染以大细胞数目进行(100,000 OH-I细胞)。
为了优化感染步骤,对两个24-孔板上的孔接种50,000;75,000或100,000 OH-I细胞/孔。一个24-孔板上的细胞以10 TICD50的HRV-16感染,另一个板上的细胞以180 TICD50的HRV-16感染。3种不同接种的细胞数目群体接受0μl、1μl、1.4μl、或1.8μl LipofectamineTM 2000。感染后24、48和72小时收集样品以测量病毒产率。24小时时,在所有情形(有或无LipofectamineTM2000),较低的病毒接种(10 TICD50)与较高的(180 TICD50)相比产生低的滴度。48小时时,在所有情形中,两种病毒接种与感染24小时后相比产生较高的病毒产率。没有Lipofectamine时,结果表示在所测量的细胞数目范围内,细胞数目不影响病毒产率。带有Lipofectamine浓度的在感染后24、48和72小时测量的病毒产率不影响HRV感染或生长。从以上结果,本实施例描述的随后的感染以低病毒接种(10 TICD50)进行,并在1.4μl/孔的LipofectamineTM 2000进行转染。
转染如下进行:首先,将24-孔板接种100,000 OH-I细胞/ml/孔,培养于添加了5%胎牛血清、5%胎克隆血清、1%L-谷氨酰胺和抗生素的Eagle’s最低必需培养基(EMEM)。在37℃、5%CO2培养箱中将细胞培养过夜。siRNA转染时的细胞层融合为大约50-60%。第二,过夜培养后,制备对每种siRNA的工作LipofectamineTM 2000(LF2K)母液。这些母液在96-孔板中制备,然后施加该溶液至24-孔板上的OH-I细胞。每种LF2K母液的总体积为50μl/孔并包括1.4μl的LF2K和48.6μl的Optimem;轻柔搅动该溶液并置于冰上直至使用。第三,向96-深-孔板的A、C和E排的每孔加入200μl的LF2K-Optimem稀释液。向B、D和F排的每孔加入180μl的Optimem。搅动siRNA溶液,短暂地在微离心管中旋转,然后置于冰上。每种siRNA的20μl样品加入至96-深-孔板的B、D和F排的合适孔,上下吸液三次而轻柔混合。因此,在转染步骤的此时间点,B、D和F排的孔具有200μl的体积(180μl Optimem+20μl siRNA溶液)。然后将A排孔中的液体转移到B排的相应孔,将C排孔中的液体转移到D排的相应孔,将E排孔中的液体转移到F排的相应孔。转移液体的结果是在B、D和F排的孔中产生siRNA-LF2K混合物。从每排转移液体后,上下吸液五次而混合各孔(吸液管头例行地更换以避免交叉污染)。然后紧密地盖上96-深-孔板,室温下培养30分钟。最后,培养30分钟后,从培养箱移出带有OH-I细胞的24-孔板,从所有孔吸去培养基。无抗生素的10%EMEM的400μl样品加至各孔,然后加入100μl siRNA-LF2K混合物。每种siRNA测试三份,因此24-孔板上的三个不同孔接受含有同样siRNA的100μlsiRNA-LF2K混合物。在37℃、5%CO2培养转染板(24-孔板)5小时。
5小时转染培养后,从所有孔吸去所有培养基,各不同siRNA-LF2K混合物质间更换吸液管头以避免交叉污染。然后以两种HRV血清型中的任一种感染细胞,通过加入100μl 2×病毒(对HRV-16稀释106,对HRV-1A稀释105.5)和100μl无抗生素或MgCl2的2%McCoy’s至各孔。在34℃,病毒与OH-I细胞一起培养1小时。然后从各孔吸去病毒培养基,以Hanks平衡盐溶液(HBSS)漂洗所有孔两次,重新补充1.5ml带有抗生素和MgCl2的2%McCoy’s。只接受普来可那立或ruprintrivir的24-孔板上的孔重新补充750μl 2×药物和750μl 2%McCoy’s并在34℃培养24小时。上清液总体积为每孔1.5ml。普来可那立或ruprintrivir培养的细胞不转染siRNA。
转染后24、48和72小时,从代表每种siRNA和对照的各孔收集400μl上清液样品,并集中用于之后的滴定。样品贮存于-70℃。对24和72小时收集物制备系列10倍稀释液,以四份滴定(每稀释液4个孔,每孔100μl)。滴定的样品与OH-I细胞一起培养于96-孔板。7天的时段后,观察到OH-I细胞的细胞病变效应(CPE)。对24小时收集物测试100至105的稀释液,对72小时收集物测试100至107的稀释液。收集用于病毒产率减少检测的病毒被冷冻,进行返滴定以确定接种物的TICD50;靶接种物为每单层10至32 TICD50。
结果概述于表33、34、35。表33概述了转染到OH-I细胞的siRNA 1至25并随后用HRV-16血清型感染的数据。表34概述了转染到OH-I细胞的siRNA 1至25并随后用HRV-1A血清型感染的数据。表35概述了转染到OH-I细胞的siRNA 21和24至33并随后用HRV-16血清型或HRV-1A血清型感染的数据。表33和34所示的数据通常分为4个不同组。每组代表siRNA的一个子集,该子集一起经历转染和感染步骤,并结合对照(即,病毒对照1与组1,病毒对照2与组2,等等)。每组经历同样的转染和感染步骤,具有同样的病毒对照。这些组的区别仅在于,每组所测试siRNA子集不是一起测试的。每组的病毒对照用作比较的基线,以确定组中的siRNA是否减少病毒复制。类似地,表35所示的数据通常分为4个不同组,每组由细双线分开。表35中的四组标记为与表33和34中的四组完全不关联。表35中的四组表示为病毒对照和所用HRV血清型。例如,一组含有“病毒对照1”和HRV16血清型。
达到了10和32 TICD50之间的TICD50。在所有情形,阳性对照普来可那立和ruprintriVir与病毒对照相比是抑制的,且在24小时减少2 log10或更多,在72小时超过5 log10。对本实施例,当与病毒对照相比减少病毒滴度超过1.0 log10时,认为siRNA显著的减少病毒产率。更高的减少很可能表示特异性抑制。对所测试的针对HRV-16的33siRNA,与病毒对照相比,在24小时时6种siRNA(10、13、14、1 5、17和1 8)表示出病毒产率的显著减少(1.5至1.75 log10/ml)(表33和35)。在72小时时12种siRNA(7至17和19)减少病毒滴度1.5至2.0 log10/ml,1种siRNA(1 8)减少病毒滴度2.5 log10。
对所测试的针对HRV-1A的33种构建体,与病毒对照相比,在24小时时2种siRNA(7和8)表示出滴度的1.25 log10减少(1.5至/ml),在72小时时2种siRNA(4和5)分别减少病毒滴度1.5和1.75 log10(表34和35)。而且,在72小时时6号siRNA减少病毒滴度1.25 log10。对所测试的其它siRNA,证明没有对HRV-16或HRV-1A的实质抑制。
表33.siRNA介导的对人类鼻病毒-16滴度的体外减少
测试组 | siRNA或对照 | 人类鼻病毒-16(10TCID50) | |
24小时收集物 /0.1ml | 72小时收集物 /0.1ml | ||
组l | 病毒对照1 | 2.25 | 6.75 |
siRNA 1 | 1.75 | 6.0 | |
siRNA2 | 1.25 | 6.25 | |
siRNA3 | 1.50 | 6.25 | |
siRNA4 | 1.50 | 6.0 | |
siRNA5 | 2.50 | 6.25 | |
siRNA6 | 1.75 | ≥6.5 | |
sicontrol | 2.5 | ≥6.5 | |
组2 | 病毒对照2 | 2.25 | 7.25 |
普来可那立1μg | | | |
siRNA7 | 1.75 | 5.5 | |
siRNA8 | 1.25 | 5.75 | |
siRNA9 | 1.25 | 5.25 | |
siRNA10 | 0.5 | 5.5 | |
siRNA11 | 1.5 | 5.25 | |
siRNA12 | 1.50 | 5.5 | |
组3 | 病毒对照3 | 2.5 | 7.75 |
siRNA13 | 1.0 | 6.0 | |
siRNA14 | 0.75 | 5.75 | |
siRNA15 | 0.75 | 6.25 | |
siRNA16 | 2.0 | 6.25 | |
siRNA17 | 0.75 | 5.75 | |
siRNA18 | 1.0 | 5.25 | |
siRNA19 | 2.25 | 6.25 | |
组4 | 病毒对照4 | 1.5 | 7.0 |
siRNA20 | 1.5 | 6.25 | |
siRNA21 | 1.5 | ≥6.5 | |
siRNA22 | 2.0 | 625 | |
siRNA23 | 2.0 | ≥6.5 | |
siRNA24 | 2.50 | ≥6.5 | |
siRNA25 | 2.75 | ≥6.5 |
病毒对照是无siRNA转染的病毒感染细胞。
表34.siRNA介导的对人类鼻病毒-1A滴度的体外减少
测试组 | siRNA或对照 | 人类鼻病毒-1A (32 TCID50) | |
24小时收集物 /0.1ml | 72小时收集物 /0.1 ml | ||
组1 | 病毒对照1 | 1.0 | 7.25 |
siRNA1 | 1.25 | 6.25 | |
siRNA2 | 2.25 | 6.75 | |
siRNA3 | 1.25 | 6.75 | |
siRNA4 | 1.50 | 5.75 | |
siRNA5 | 0.5 | 5.50 | |
siRNA6 | 1.25 | 6.0 | |
sicontrol | 1.50 | 7.25 | |
组2 | 病毒对照2 | 1.75 | 6.25 |
普来可那立10μg | | 0.75 | |
siRNA7 | 0.5 | 6.25 | |
siRNA8 | 0.5 | 6.25 | |
siRNA9 | 1.5 | 6.0 | |
siRNA10 | 2.0 | 6.25 | |
siRNA11 | 1.75 | 5.75 | |
siRNA12 | 1.75 | 6.75 | |
组3 | 病毒对照3 | 1.0 | 6.5 |
siRNA13 | 1.75 | 6.75 | |
siRNA14 | 1.50 | 6.75 | |
siRNA15 | 1.25 | 6.25 | |
siRNA16 | 1.75 | 7.0 | |
siRNA17 | 1.75 | 6.50 | |
siRNA18 | 1.25 | 6.25 | |
Ruprintrivir.0.1μg | | 1.5 | |
组4 | 病毒对照4 | 1.0 | 7.0 |
siRNA19 | 1.50 | 6.75 | |
siRNA20 | 1.75 | 7.0 | |
siRNA21 | 未检测 | 未检测 | |
siRNA22 | 2.0 | 6.75 | |
siRNA23 | 2.25 | 6.75 | |
siRA24 | 未检测 | 未检测 | |
siRNA25 | 未检测 | 未检测 |
表35.siRNA介导的对人类鼻病毒-1A或人类鼻病毒-16滴度的体外减少
siRNA或对照 | 人类鼻病毒-16 (32TCID50) | siRNA或对照 | 人类鼻病毒-1A (32TCID50) | ||
24小时收集物/0.1 ml | 72小时1收集物/0.1 ml | 24小时收集物/0.1ml | 72小时收集物/0.1 ml | ||
病毒对照1 | 2.0 | 7.0 | 病毒对照1 | 2.0 | 6.25 |
siRNA21 | 1.25 | 6.75 | siRNA21 | 2.5 | 6.75 |
siRNA24 | 1.75 | 6.5 | siRNA24 | 2.0 | 6.25 |
siRNA25 | 1.75 | 6.75 | siRNA25 | 2.5 | 6.75 |
siRNA26 | 3.0 | 6.75 | siRNA26 | 2.0 | 6.5 |
siRNA27 | 2.5 | 7.25 | siRNA27 | 1.75 | 6.75 |
siRNA28 | 2.0 | 6.75 | siRNA28 | 2.25 | 6.5 |
普来可那立1μg | | | 普来可那立10μg | | 0.75 |
病毒对照2 | 2.5 | 7.5 | 病毒对照2 | 2.50 | 6.5 |
siRNA29 | 2.25 | 7.25 | siRNA29 | 1.5 | 6.5 |
siRNA30 | 2.5 | 6.75 | siRNA30 | 2.0 | 7.0 |
siRNA31 | 2.0 | 7.0 | siRNA31 | 2.0 | 7.0 |
siRNA32 | 2.0 | 6.75 | siRNA32 | 2.5 | 6.0 |
siRNA33 | 2.25 | 6.75 | siRNA33 | 2.25 | 6.5 |
sicontrol | 2.75 | 7.0 | siRNA对照 | 2.5 | 6.5 |
Ruprintrivir0.1μg | | 1.25 | Ruprintrivir0.1μg | | 0.5 |
总之,两种阳性对照1μg的普来可那立和10μg的ruprintrivir如所预期的在24小时和72小时显著抑制HRV的两种血清型。与病毒对照相比,在24小时时siRNA 10、13-15、17和1 8,在72小时时siRNA 7至19减少HRV-16病毒滴度至少1.0 log10。与病毒对照相比,在24小时时siRNA7和8,在72小时时siRNA 4至6减少HRV-1A病毒滴度至少1.0 log10。
表33、34和35的数据表示选择的siRNA能在体外有效减少人类鼻病毒的病毒复制。
实施例30.体外siRNA介导的人类偏肺病毒RNA的降解
本实施例证明本发明的示例性siRNA分子在体外显著减少人类偏肺病毒(hMPV)靶转录子(RNA)的RNA拷贝数。特定病毒转录子的病毒RNA拷贝数的减少与病毒复制减少相关联。因此,病毒复制减少使得新病毒颗粒的生成最少和/或阻止新病毒颗粒的生成,因此减少或抑制再次感染并使得患者病毒诱导的病理最少。
本实施例描述了以双-萤光素酶检测进行最初筛选200siRNA以鉴别有效减少靶RNA水平的siRNA,如由花虫萤光素酶活性减少而间接测量的。而且本实施例描述了对从最初筛选的200siRNA选择的57种鉴别的siRNA的第二筛选,以进一步表征有效减少靶hMPV RNA水平的那些siRNA。
下表36描述了接受最初双-萤光素酶检测筛选的200siRNA。选择以靶向hMPV RNA的200siRNA代表以下一种hMPV基因的“保守”区:N基因、P基因、M基因、F基因、M2-1基因、M2-2基因、或L基因。通过分析hMPV基因组可得的Genbank核苷酸序列(登记号#AY297748.1)并由比对推断这些序列中的“保守”区而选择这些siRNA。对最初筛选,每种siRNA以10 nM浓度三份地检测。
表36.双-萤光素酶检测筛选的siRNA的核苷酸序列
siRNA# | 病毒靶序列中siRNA的5’核苷酸位置 | siRNA核苷酸序列 | hMPV靶基因 | |
1 | 60 | cuucaagggauucaccuaa | (SEQ ID NO:10885) | N |
2 | 74 | ccuaagugaucugucauau | (SEQ ID NO:10886) | N |
3 | 75 | cuaagugaucugucauaua | (SEQ ID NO:10887) | N |
4 | 86 | gucauauaaacaugcuaua | (SEQ ID NO:10888) | N |
5 | 88 | cauauaaacaugcuauauu | (SEQ ID NO:10889) | N |
6 | 111 | gagucucaauacacaauaa | (SEQ ID NO:10890) | N |
7 | 122 | cacaauaaaaagagaugua | (SEQ ID NO:10891) | N |
8 | 174 | cagcaagagauaacacuuu | (SEQ ID NO:10894) | N |
9 | 198 | ggagagauucuuuacacua | (SEQ ID NO:10895) | N |
10 | 199 | gagagauucuuuacacuaa | (SEQ ID NO:10896) | N |
11 | 214 | cuaaacauacugauuacaa | (SEQ ID NO:10897) | N |
12 | 240 | gcagagauagggauacaau | (SEQ ID NO:10899) | N |
13 | 241 | cagagauagggauacaaua | (SEQ ID NO:10900) | N |
14 | 243 | gagauagggauacaauaua | (SEQ ID NO:10901) | N |
15 | 245 | gauagggauacaauauauu | (SEQ ID NO:10902) | N |
16 | 249 | gggauacaauauauuugca | (SEQ ID NO:10903) | N |
17 | 269 | ggcucuaggaucagaaaga | (SEQ ID NO:10904) | N |
18 | 280 | cagaaagaguacaacagau | (SEQ ID NO:10905) | N |
19 | 282 | gaaagaguacaacagauuu | (SEQ ID NO:10906) | N |
20 | 288 | guacaacagauuuuaagaa | (SEQ IDNO:10907) | N |
21 | 383 | guugcaaauguuagauaua | (SEQ ID NO:10920) | N |
22 | 386 | gcaaauguuagauauacau | (SEQ ID NO:10921) | N |
23 | 396 | gauauacauggaguggaaa | (SEQ ID NO:10922) | N |
24 | 416 | gaguuggguagaagaaaua | (SEQ ID NO:10924) | N |
25 | 421 | ggguagaagaaauagacaa | (SEQ ID NO:10925) | N |
26 | 422 | gguagaagaaauagacaaa | (SEQ ID NO:10926) | N |
27 | 429 | gaaauagacaaagaggcaa | (SEQ ID NO:10927) | N |
28 | 435 | gacaaagaggcaagaaaaa | (SEQ ID NO:10928) | N |
29 | 467 | gcuaaaggaaucaucaggu | (SEQ ID NO:10933) | N |
30 | 468 | cuaaaggaaucaucaggua | (SEQ ID NO:10934) | N |
31 | 481 | cagguaacaucccacaaaa | (SEQ ID NO:10935) | N |
32 | 506 | gccuucagcaccagacaca | (SEQ ID NO:10938) | N |
33 | 513 | gcaccaggacacacaauaa | (SEQ ID NO:10939) | N |
34 | 514 | caccagacacaccaauaau | (SEQ ID NO:10940) | N |
35 | 516 | ccagacacaccaauaauuu | (SEQ ID NO:10941) | N |
36 | 562 | cuaaacuagcaucaacaau | (SEQ ID NO:10944) | N |
37 | 588 | ggacuagagacuacaguua | (SEQ ID NO:10945) | N |
38 | 663 | ccgaagauugcuagaucuu | (SEQ ID NO:10951) | N |
39 | 676 | gaucuuucuaugaacuauu | (SEQ ID NO:10952) | N |
40 | 715 | ggagucuauucauugagua | (SEQ ID NO:10954) | N |
41 | 716 | gagucuauucauugaguau | (SEQ ID NO:10955) | N |
42 | 735 | gggaaagcuuuaggcucau | (SEQ ID NO:10956) | N |
43 | 741 | gcuuuaggcucaucuucaa | (SEQ ID NO:10957) | N |
44 | 747 | ggcucaucuucaacaggaa | (SEQ ID NO:10958) | N |
45 | 763 | gaagcaaagcagaaaguuu | (SEQ ID NO:10959) | N |
46 | 778 | guuuguuuguaaauauauu | (SEQ ID NO:10960) | N |
47 | 816 | ggucaaacaaugcuaaggu | (SEQ ID NO:10966) | N |
48 | 846 | gccagaucaucuaacaaca | (SEQ ID NO:10968) | N |
49 | 847 | ccagaucaucuaacaacau | (SEQ ID NO:10969) | N |
50 | 850 | gaucaucuaacaacauaau | (SEQ IDNO:10971) | N |
51 | 860 | caacauaaugcuaggacau | (SEQ ID NO:10972) | N |
52 | 891 | gcugaauugaagcaaguua | (SEQ ID NO:10974) | N |
53 | 953 | gcuuuuacaucuaagacaa | (SEQ ID NO:10979) | N |
54 | 1038 | gcuucaggucuagguauaa | (SEQ ID NO:10980) | N |
55 | 1104 | gcagaaaaguaugccagaa | (SEQ ID NO:10983) | N |
56 | 1116 | gccagaagcuuaaaagaaa | (SEQ ID NO:10984) | N |
57 | 1123 | gcuuaaaagaaagcaacaa | (SEQ ID NO:10985) | N |
58 | 1163 | gcucacagacgaagaaaaa | (SEQ ID NO:10986) | N |
59 | 1297 | ggguaaugaagcagcaaaa | (SEQ ID NO:11282) | P |
60 | 1319 | gcagaagcuuuccagaaau | (SEQ ID NO:11283) | P |
61 | 1380 | gggaaaaaguaaacacuau | (SEQ ID NO:11284) | P |
62 | 1381 | ggaaaaaguaaacacuaua | (SEQ ID NO:11285) | P |
63 | 1699 | gcucucagacaaugaggaa | (SEQ ID NO:11286) | P |
64 | 1724 | gcagaguccucaaucuuaa | (SEQ ID NO:11287) | P |
65 | 1780 | ggcuagacuagaaucaaua | (SEQ IDNO:11288) | P |
66 | 1898 | gguauaagagaagaacuaa | (SEQIDNO:11289) | P |
67 | 1963 | ggaagaggaaaugaaucaa | (SEQ ID NO:11290) | P |
68 | 2017 | cgagaaggcaaaagaacuu | (SEQ ID NO:11291) | P |
69 | 2104 | ggauaacaaucaaggagaa | (SEQ ID NO:11292) | P |
70 | 2196 | ggacacuuaucaaggcauu | (SEQ IDNO:11293) | M |
71 | 2431 | cccaaaaaauucgaaguaa | (SEQ ID NO:11294) | M |
72 | 2432 | ccaaaaaauucgaaguaaa | (SEQ ID NO:11295) | M |
73 | 2542 | ccauaugggauggugucaa | (SEQ ID NO:11296) | M |
74 | 2576 | ccaaaucaguuggcaacaa | (SEQ ID NO:11297) | M |
75 | 3071 | ggaaagugaugauuaucau | (SEQ ID NO:11298) | F |
76 | 3115 | ggacuaaaggaaaguuauu | (SEQ ID NO:11299) | F |
77 | 3430 | gcgauagccaaaaccauaa | (SEQ ID NO:11300) | F |
78 | 3449 | ggcuugagagugaagugaa | (SEQ ID NO:11301) | F |
79 | 3589 | gcaauuaacaagaacaaau | (SEQ ID NO:11302) | F |
80 | 3631 | gcugucagcuucagucaau | (SEQ ID NO:11303) | F |
81 | 3697 | gggauaacaccagcaauau | (SEQ ID NO:11304) | F |
82 | 3709 | gcaauaucauuggaccuaa | (SEQ ID NO:11305) | F |
83 | 3818 | ggagaaaaggauuuggaau | (SEQ ID NO:11306) | F |
84 | 3928 | gcucccucuuguucagaaa | (SEQ ID NO:11307) | F |
85 | 4010 | ccacuguuuacuacccaaa | (SEQ ID NO:11308) | F |
86 | 4093 | gcugagcaaucaagagaau | (SEQ ID NO:11309) | F |
87 | 4154 | gcacaggaagacacccuau | (SEQ ID NO:11310) | F |
88 | 4356 | gggugaacagcauguaaua | (SEQ ID NO:11311) | F |
89 | 4522 | ggaaacacuggcuucauua | (SEQ ID NO:11312) | F |
90 | 4589 | gcaucaucaucauaaucaa | (SEQ ID NO:11313) | F |
91 | 4673 | cgcauaguuaguuaauuaa | (SEQ ID NO:11314) | F |
92 | 4674 | gcauaguuaguuaauuaaa | (SEQ ID NO:11315) | F |
93 | 4716 | cguaaagcuccaugcaaau | (SEQ ID NO:11316) | M2-1 |
94 | 4771 | gcaaauucaaccacaauua | (SEQ ID NO:11317) | M2-1 |
95 | 4993 | gcuauagucuacauaacau | (SEQ ID NO:11318) | M2-1 |
96 | 5021 | gcuacaagaaauagaagua | (SEQ ID NO:11319) | M2-1 |
97 | 5082 | gcacuucacaacuugauau | (SEQ ID NO:11320) | M2-1 |
98 | 5104 | ccuauauggagaugagcaa | (SEQ ID NO:11321) | M2-1 |
99 | 5160 | ccaagagaaaaacugaaaa | (SEQ ID NO:11322) | M2-1 |
100 | 5184 | gcgaaauuaauaauugauu | (SEQ ID NO:11323) | M2-1 |
101 | 5185 | cgaaauuaauaauugauuu | (SEQ ID NO:11324) | M2-1 |
102 | 5254 | gcacuaaucaagugcagua | (SEQ ID NO:11325) | M2-1 |
103 | 5318 | ggacacacaaagaauuaaa | (SEQ ID NO:11326) | M2-2 |
104 | 5359 | gcaaaaucacacaccaaua | (SEQ ID NO:11327) | M2-2 |
105 | 5422 | gcuuacuuaaguuaguaaa | (SEQ ID NO:11328) | M2-2 |
106 | 5454 | gggauaaaugacaaugaaa | (SEQ ID NO:11329) | SH |
107 | 5455 | ggauaaaugacaaugaaaa | (SEQ ID NO:11330) | SH |
108 | 5548 | gguaaauugcuuauugcau | (SEQ ID NO:11331) | SH |
109 | 5816 | cgaaucaaugcacaaauau | (SEQID NO:11332) | SH |
110 | 7097 | gggacaaauaacaauggau | (SEQ ID NO:11333) | L |
111 | 7194 | gcaauuggcucaugccuuu | (SEQ ID NO:11334) | L |
112 | 7352 | gcagcaugaaauaaugaaa | (SEEID NO:11335) | L |
113 | 7388 | gcucacauuauuaaaacaa | (SEQ ID NO:11336) | L |
114 | 7436 | ccuaaaauuaaguaugaua | (SEQ ID NO:11337) | L |
115 | 7546 | gguuuaguaacugguauaa | (SEQ IDNO:11338) | L |
116 | 7558 | gguauaaucucaauaaauu | (SEQ ID NO:11339) | L |
117 | 7669 | gguguguaguaaaaagcaa | (SEQ ID NO:11340) | L |
118 | 7721 | ccaacuguuaacauggaaa | (SEQ ID NO:11341) | L |
119 | 7780 | ggguaaguaacaaccugaa | (SEQ ID NO:11342) | L |
120 | 7812 | ggacuaggauuuagaagua | (SEQ ID NO:11343) | L |
121 | 7839 | gguauguuaacuaauaaau | (SEQ ID NO:11344) | L |
122 | 8279 | ggagagcuuaacagaacua | (SEQ ID NO:11345) | L |
123 | 8304 | gcauuuauacuaaaaauua | (SEQ ID NO:11346) | L |
124 | 8435 | gcuaaguguacaagauuuu | (SEQ ID NO:11347) | L |
125 | 8566 | cgguauauccaaaaaauua | (SEQ ID NO:11348) | L |
126 | 8766 | gggaaagaaagagaauuaa | (SEQ ID NO:11349) | L |
127 | 8811 | ccuggcaaacaaagacaaa | (SEQ ID NO:11350) | L |
128 | 8927 | ggaaaugaaaucagaacuu | (SEQ ID NO:11351) | L |
129 | 8962 | ggaagaaugauaguuacaa | (SEQ ID NO:11352) | L |
130 | 8991 | gcaagagccuccauaguaa | (SEQ ID NO:11353) | L |
131 | 9014 | ccuaaguaaauucaaucaa | (SEQ ID NO:11354) | L |
132 | 9133 | ccacaaugauaugugcaua | (SEQ ID NO:11355) | L |
133 | 9214 | ggcuauacagauaccauau | (SEQ ID NO:11356) | L |
134 | 9483 | ggugaaacauauauaucaa | (SEQ ID NO:11357) | L |
135 | 9558 | cccauaaaaaagauauuaa | (SEQ ID NO:11358) | L |
136 | 9577 | ggguaggucccuggauaaa | (SEQ ID NO:11359) | L |
137 | 9666 | ggagaaaguauacuaguua | (SEQ ID NO:11360) | L |
138 | 9933 | gcaaucagccauguggauu | (SEQ ID NO:11361) | L |
139 | 10008 | gccuuauuaucuauagaaa | (SEQ ID NO:11362) | L |
140 | 10009 | ccuuauuaucuauagaaaa | (SEQ ID NO:11363) | L |
141 | 10038 | gcuacauuaacaacacuaa | (SEQ ID NO:11364) | L |
142 | 10092 | gcuaagguaacaagugaua | (SEQ ID NO:11365) | L |
143 | 10173 | gcuauacacuauagcagaa | (SEQ ID NO:11366) | L |
144 | 10311 | gguacaaagucuauaacua | (SEQ ID NO:11367) | L |
145 | 10350 | gcuaucaaugguugagaua | (SEQ ID NO:11368) | L |
146 | 10404 | ggguuguuaucuaggauau | (SEQ ID NO:11369) | L |
147 | 10581 | gcgacuaguucucauuuaa | (SEQ ID NO:11370) | L |
148 | 10582 | cgacuaguucucauuuaaa | (SEQ ID NO:11371) | L |
149 | 10670 | gguaggaucaagcacucaa | (SEQ ID NO:11372) | L |
150 | 10681 | gcacucaagagaaaaaauu | (SEQ ID NO:11373) | L |
151 | 10704 | ccuguuuauaacagacaaa | (SEQ ID NO:11374) | L |
152 | 10795 | ggcuaagaagauugcucaa | (SEQ ID NO:11375) | L |
153 | 10796 | gcuaagaagauugcucaau | (SEQ ID NO:11376) | L |
154 | 10822 | gcauaggaaguuuagguau | (SEQ ID NO:11377) | L |
155 | 10860 | ccucuauuaccaagauuua | (SEQ ID NO:11378) | L |
156 | 10869 | ccaagauuuaugaguguaa | (SEQ ID NO:11379) | L |
157 | 10944 | ccagcuuauaggacaacaa | (SEQ ID NO:11380) | L |
158 | 10947 | gcuuauaggacaacaaauu | (SEQ ID NO:11381) | L |
159 | 10954 | ggacaacaaauuaccacuu | (SEQ ID NO:11382) | L |
160 | 11102 | cccaaaacaauuagucuua | (SEQ ID NO:11383) | L |
161 | 11154 | ccuccuguauuucaaggaa | (SEQ ID NO:11384) | L |
162 | 11253 | gggaagaugcuuaugccua | (SEQ ID NO:11385) | L |
163 | 11364 | gcaugccauugguguggaa | (SEQ ID NO:11386) | L |
164 | 11369 | ccauugguguggaauauua | (SEQ ID NO:11387) | L |
165 | 11666 | ccuaucauuaguagguuau | (SEQ ID NO:11388) | L |
166 | 11679 | gguuauauaggauuuaaaa | (SEQ ID NO:11389) | L |
167 | 11688 | ggauuuaaaaacugguuua | (SEQ ID NO:11390) | L |
168 | 11732 | gcaugaaguacccuggauu | (SEQ ID NO:11391) | L |
169 | 11764 | gggagcuaguugaaauuaa | (SEQ ID NO:11392) | L |
170 | 11765 | ggagcuaguugaaauuaaa | (SEQ ID NO:11393) | L |
171 | 11874 | cgauuaauuaggaagaaau | (SEQ ID NO:11394) | L |
172 | 12022 | ccaguucagacuacaacaa | (SEQ ID NO:11395) | L |
173 | 12042 | gggaaguuaacaagaaauu | (SEQ ID NO:11396) | L |
174 | 12043 | ggaaguuaacaagaaauua | (SEQ ID NO:11397) | L |
175 | 12083 | gcacguaaacagguauaau | (SEQ ID NO:11398) | L |
176 | 12151 | ggaaauugauaaaggacuu | (SEQ ID NO:11399) | L |
177 | 12164 | ggacuuaaacccuaagguu | (SEQ ID NO:11400) | L |
178 | 12173 | cccuaagguucuuuacuuu | (SEQ ID NO:11401) | L |
179 | 12174 | ccuaagguucuuuacuuua | (SEQ ID NO:11402) | L |
180 | 12204 | gcagguaacuggauggcaa | (SEQ ID NO:11403) | L |
181 | 12207 | gguaacuggauggcaagaa | (SEQ ID NO:11404) | L |
182 | 12272 | ggaugaucuugaucaccau | (SEQ ID NO:11405) | L |
183 | 12367 | ccacagaugcaacucaaaa | (SEQ ID NO:11406) | L |
184 | 12394 | gggacuugauacacagaau | (SEQ ID NO:11407) | L |
185 | 12395 | ggacuugauacacagaaua | (SEQ ID NO:11408) | L |
186 | 12534 | ggaacagaucuuuacuuau | (SEQ ID NO:11409) | L |
187 | 12572 | ggacugcaauauaaaguua | (SEQ ID NO:11410) | L |
188 | 12692 | gccaugucacggagaaaua | (SEQ ID NO:11411) | L |
189 | 12754 | ccucaaaaaaacuagacaa | (SEQ ID NO:11412) | L |
190 | 12810 | ggauuaagaauaccaauaa | (SEQ ID NO:11413) | L |
191 | 12902 | cggaaguaagauuauagaa | (SEQ ID NO:11414) | L |
192 | 12903 | ggaaguaagauuauagaau | (SEQ ID NO:11415) | L |
193 | 12961 | gguuagagcauaucuugaa | (SEQ ID NO:11416) | L |
194 | 12990 | ggugaauuaaacuaugauu | (SEQ ID NO:11417) | L |
195 | 13035 | cccaauaugaucaagcuua | (SEQ ID NO:11418) | L |
196 | 13036 | ccaauaugaucaagcuuau | (SEQ ID NO:11419) | L |
197 | 13061 | ccugggaaaugcagagaua | (SEQ ID NO:11420) | L |
198 | 13064 | gggaaaugcagagauaaaa | (SEQ ID NO:11421) | L |
199 | 13065 | ggaaaugcagagauaaaaa | (SEQ ID NO:11422) | L |
200 | 13071 | gcagagauaaaaaaacuaa | (SEQ ID NO:11423) | L |
下表37概述了双-萤光素酶检测结果。萤火虫萤光素酶作为内转染对照和萤光素酶检测对照(即,萤火虫萤光素酶转录子不是siRNA的靶)。花虫萤光素酶转录子与hMPV靶序列融合。花虫萤光素酶活性的减少表示细胞内花虫萤光素酶/hMPV靶序列转录子数目减少。因此,根据此检测,所测量花虫萤光素酶活性的较大减少是更有效siRNA的指征。siRNA效力表示为表37中的沉默百分比(%沉默),计算为100×[1-(平均花虫siRNA/平均萤火虫siRNA)/(平均花虫sicontrol/平均萤火虫sicontrol)]。较高百分比与更有效siRNA相关联。
表37.200 siRNA对靶RNA降解效力的双-萤光素酶检测结果
hMPv靶基因 | siRNA | 萤火虫萤光素酶 | 花虫萤光素酶 | %沉默 | ||||
N | Nsicontrol | 27.928 | 30.5828 | 25.3713 | 47.7974 | 53.8565 | 42.2478 | 0% |
N | 1 | 30.5676 | 34.8861 | 31.0843 | 5.5751 | 5.8177 | 5.7094 | 90.520306 |
N | 2 | 34.6326 | 40.9162 | 41.3312 | 60.5914 | 66.5246 | 64.5825 | 12.235444 |
N | 3 | 18.7181 | 26.9685 | 28.9728 | 39.1731 | 60.4988 | 68.5949 | -20.602022 |
N | 4 | 27.9183 | 32.8811 | 32.7704 | 49.3759 | 57.7581 | 62.7936 | 2.8217953 |
N | 5 | 30.0243 | 31.9289 | 37.605 | 52.6084 | 57.8041 | 65.4435 | 5.4806332 |
N | 6 | 18.712 | 21.1744 | 24.0004 | 11.6898 | 13.4643 | 13.1618 | 67.907131 |
N | 7 | 39.1671 | 47.9692 | 46.2934 | 51.3052 | 65.0097 | 63.7821 | 27.773825 |
N | 8 | 30.3026 | 37.0956 | 33.5938 | 48.9493 | 64.1518 | 60.6797 | 7.9220868 |
N | 9 | 35.0222 | 28.5869 | 32.3542 | 49.0298 | 39.227 | 44.5528 | 25.9432 |
N | 10 | 26.0519 | 23.1261 | 21.7516 | 36.0005 | 31.4406 | 28.4737 | 27.639966 |
N | 11 | 23.5992 | 21.4999 | 24.566 | 36.6642 | 37.1155 | 43.3241 | 10.050993 |
N | 12 | 37.8536 | 31.3862 | 29.8096 | 51.8933 | 47.7502 | 43.2448 | 22.805658 |
N | 13 | 27.2456 | 24.903 | 28.1906 | 39.0897 | 32.1443 | 39.7394 | 26.085092 |
N | 14 | 21.7298 | 20.521 | 18.591 | 25.9944 | 24.4481 | 21.3958 | 36.817815 |
N | 15 | 33.9466 | 28.5711 | 32.9416 | 46.8615 | 42.5866 | 45.7029 | 24.239703 |
N | 16 | 40.9688 | 32.0063 | 34.3876 | 67.8157 | 55.4525 | 61.4958 | 7.9116736 |
N | 17 | 20.4853 | 22.1031 | 21.0988 | 21.3855 | 21.3583 | 21.3474 | 46.149853 |
N | 18 | 20.3425 | 21.123 | 18.9807 | 19.5657 | 22.2023 | 18.1191 | 46.984248 |
N | 19 | 24.3143 | 22.3699 | 21.9125 | 28.1652 | 25.1039 | 27.0592 | 37.337748 |
N | 20 | 29.8761 | 28.1125 | 28.8518 | 40.4098 | 38.2723 | 36.6134 | 28.955381 |
N | 21 | 35.0731 | 36.1802 | 33.7572 | 61.344 | 62.583 | 58.5114 | 7.0339931 |
N | 22 | 18.0974 | 15.6114 | 18.4168 | 38.8525 | 31.0135 | 36.2891 | -8.9758953 |
N | 23 | 35.6841 | 34.8649 | 33.183 | 51.5648 | 50.7528 | 44.4457 | 24.291374 |
N | 24 | 35.767 | 33.8879 | 32.1497 | 61.7046 | 69.0208 | 55.6915 | 2.015241 |
N | 25 | 25.2963 | 24.0016 | 22.5738 | 32.506 | 27.3097 | 26.8378 | 35.483791 |
N | 26 | 25.6974 | 26.4022 | 26.2649 | 34.9944 | 37.9287 | 35.6109 | 25.888246 |
N | 27 | 26.0077 | 26.8305 | 29.8229 | 37.7121 | 38.4859 | 37.4114 | 26.454901 |
N | 28 | 23.4401 | 23.4625 | 20.671 | 15.6677 | 17.1257 | 14.6688 | 62.415268 |
N | 29 | 24.4111 | 27.6527 | 21.3214 | 45.0223 | 46.2752 | 38.6559 | 5.241143 |
N | 30 | 24.1915 | 20.593 | 22.9204 | 47.4054 | 41.0789 | 45.5486 | -5.9331685 |
N | 31 | 35.4845 | 34.6695 | 32.716 | 41.0051 | 38.409 | 36.9601 | 39.464711 |
N | 32 | 25.3755 | 26.211 | 24.9847 | 9.9498 | 10.2209 | 9.3382 | 79.378122 |
N | 33 | 23.0457 | 25.5582 | 27.6969 | 9.683 | 10.262 | 11.014 | 78.288067 |
N | 34 | 11.2645 | 11.9403 | 14.4547 | 11.8901 | 13.8073 | 13.65 | 44.090947 |
N | 35 | 26.0071 | 29.8332 | 30.1544 | 38.4229 | 48.6692 | 47.6686 | 16.144371 |
N | 36 | 16.1825 | 18.755 | 18.5051 | 32.9247 | 36.1832 | 38.2632 | -7.5079233 |
N | 37 | 26.6079 | 26.5607 | 32.4129 | 46.0072 | 50.0075 | 57.9052 | 3.7600193 |
N | 38 | 24.1958 | 24.3966 | 25.632 | 46.9843 | 50.0746 | 47.8712 | -4.4846628 |
N | 39 | 20.0787 | 19.5131 | 19.2493 | 37.2365 | 36.7495 | 36.3744 | -0.3628838 |
N | 40 | 26.8245 | 28.317 | 29.1997 | 38.0285 | 46.8881 | 45.6146 | 17.183818 |
N | 41 | 23.9029 | 22.7504 | 18.1435 | 45.447 | 42.9659 | 39.0455 | -4.2923884 |
N | 42 | 24.802 | 23.0239 | 22.5205 | 33.3397 | 27.5202 | 27.4041 | 32.859839 |
N | 43 | 27.4113 | 26.1257 | 23.6277 | 53.1069 | 49.1756 | 46.2852 | -3.0328251 |
N | 44 | 17.6333 | 17.4712 | 16.2981 | 30.8108 | 28.5366 | 26.7737 | 10.346937 |
N | 45 | 23.3978 | 21.5174 | 21.7461 | 6.7082 | 6.407 | 67113 | 84.08477 |
N | 46 | 28.8204 | 24.9472 | 27.5777 | 45.2449 | 40.7861 | 42.2756 | 15.597137 |
N | 47 | 16.6454 | 17.2237 | 14.8715 | 17.7277 | 18.8391 | 16.0972 | 42.181926 |
N | 48 | 19.0061 | 17.7011 | 16.3211 | 12.6826 | 11.95 | 11.394 | 63.645664 |
N | 49 | 15.3041 | 13.7256 | 15.6344 | 27.2625 | 24.7802 | 26.1378 | 6.3343168 |
N | 50 | 29.6166 | 30.8804 | 29.1955 | 46.9922 | 48.8737 | 45.96 | 15.38642 |
N | 51 | 26.862 | 26.8215 | 25.05 | 44.8789 | 42.9423 | 39.9379 | 13.169373 |
N | 52 | 18.6649 | 17.6678 | 14.733 | 34.3204 | 29.9523 | 27.0617 | 4.2925512 |
N | 53 | 19.1458 | 17.9679 | 16.554 | 35.2927 | 34.2236 | 30.4593 | 0.3168657 |
N | 54 | 32.5823 | 33.059 | 32.3469 | 59.0335 | 58.463 | 53.5643 | 6.5848387 |
N | 55 | 15.3767 | 14.9568 | 12.7516 | 19.6105 | 18.0042 | 17.0053 | 32.163218 |
N | 56 | 19.1216 | 19.1458 | 18.9002 | 25.5891 | 29.2977 | 24.5872 | 25.609794 |
N | 57 | 23.8068 | 22.7135 | 20.3704 | 40.9168 | 35.7718 | 34.0778 | 11.389957 |
N | 58 | 11.4412 | 9.9783 | 11.0364 | 15.4384 | 15.2859 | 14.5539 | 25.348911 |
P | Psicontrol | 11.2094 | 10.6081 | 9.4047 | 122.2887 | 131.1846 | 107.7269 | 0% |
P | 59 | 10.697 | 13.8648 | 14.7481 | 7.2963 | 9.0423 | 9.3448 | 94.352372 |
P | 60 | 11.878 | 12.6046 | 13.0613 | 4.9205 | 4.8981 | 5.2248 | 96.536445 |
P | 61 | 8.1227 | 7.0458 | 7.6793 | 84.1004 | 78.7462 | 77.9821 | 8.8872044 |
P | 62 | 8.5033 | 9.2861 | 12.1278 | 110.8868 | 111.0465 | 136.1474 | -3.4607181 |
P | 63 | 10.386 | 11.0685 | 11.9306 | 124.4945 | 132.1592 | 144.0445 | -3.7481185 |
P | 64 | 15.2151 | 19.144 | 15.4057 | 19.0666 | 25.0996 | 22.5453 | 88.412388 |
P | 65 | 10.2451 | 10.988 | 9.703 | 129.5517 | 132.5337 | 118.8359 | -6.4351837 |
P | 66 | 12.8992 | 17.8203 | 16.6212 | 90.4959 | 99.6181 | 121.6685 | 43.071128 |
P | 67 | 9.6135 | 9.9873 | 11.5392 | 105.3922 | 112.2033 | 120.7532 | 6.0792778 |
P | 68 | 13.1206 | 12.5217 | 12.1532 | 137.4372 | 118.6314 | 116.0674 | 14.890682 |
P | 69 | 10.2777 | 8.8893 | 8.9836 | 126.6192 | 112.1464 | 111.3533 | -7.5086526 |
M | Msicontrol | 3.4037 | 3.3699 | 3.4842 | 20.6919 | 19.0309 | 20.8162 | 0% |
M | 70 | 3.6233 | 4.5514 | 5.0324 | 10.2227 | 11.5743 | 8.4331 | 61.215941 |
M | 71 | 3.3196 | 2.9542 | 4.016 | 18.8179 | 18.2287 | 21.247 | 4.0079913 |
M | 72 | 3.5326 | 4.1715 | 4.1092 | 19.1646 | 22.0002 | 20.3861 | 11.715531 |
M | 73 | 2.2736 | 3.7619 | 2.8816 | 1.305 | 2.0649 | 1.4393 | 90.861596 |
M | 71 | 2.6656 | 3.0649 | 2.7177 | 23.7602 | 24.0959 | 21.4957 | -39.096015 |
F | Fsicontrol | 7.8571 | 6.7966 | 7.335 | 55.5336 | 49.8435 | 50.9222 | 0% |
P | 75 | 8.8536 | 8.8282 | 6.4977 | 57.069 | 61.3785 | 50.0317 | 1.9739514 |
F | 76 | 6.3894 | 5.9738 | 6.2884 | 49.3656 | 48.1072 | 52.2303 | -12.916452 |
F | 77 | 8.4754 | 7.7906 | 7.6508 | 59.9011 | 61.6289 | 59.0789 | -6.2376846 |
F | 78 | 5.151 | 4.869 | 5.2859 | 14.5073 | 15.2357 | 15.3041 | 58.595219 |
F | 79 | 4.8134 | 4.503 | 4.6331 | 32.4704 | 38.5899 | 38.216 | -10.207173 |
F | 80 | 7.7561 | 8.3599 | 6.6592 | 5.0082 | 5.2792 | 4.1739 | 91.067199 |
F | 81 | 6.8885 | 8.1106 | 6.1432 | 9.4483 | 11.4738 | 8.2177 | 80.610043 |
F | 82 | 5.6313 | 5.9351 | 4.3754 | 27.3103 | 26.5547 | 24.3652 | 30.963367 |
F | 83 | 8.5275 | 6.9636 | 7.4137 | 65.0738 | 56.1948 | 52.785 | -6.9052485 |
F | 84 | 6.8407 | 7.6623 | 7.2884 | 52.2169 | 58.999 | 54.3121 | -6.8633676 |
F | 85 | 37.6262 | 42.2308 | 35.2346 | 9.3539 | 10.9493 | 9.3019 | 96.015867 |
F | 86 | 21.7479 | 26.5692 | 26.0961 | 173.6864 | 202.6429 | 197.743 | -19.488891 |
F | 87 | 33.2708 | 35.3616 | 33.2097 | 22.0311 | 25.3344 | 23.8915 | 89.162949 |
F | 88 | 40.1018 | 41.192 | 35.8329 | 42.4389 | 47.5863 | 39.7739 | 82.835676 |
F | 89 | 27.6564 | 29.7642 | 26.5831 | 99.9944 | 105.5671 | 86.835 | 46.088095 |
F | 90 | 22.8037 | 24.3579 | 19.5137 | 52.1498 | 56.7962 | 49.3069 | 63.238128 |
F | 91 | 24.6671 | 29.0884 | 24.0965 | 177.5542 | 192.488 | 169.1241 | -7.2664445 |
F | 92 | 22.5223 | 23.1552 | 21.8042 | 146.8529 | 152.6536 | 161.8563 | -5.8930554 |
M2-1 | M2-1sicontrol | 28.4749 | 31.2531 | 25.9436 | 110.5559 | 114.3964 | 98.9211 | 0% |
M2-1 | 93 | 34.9502 | 33.0584 | 36.8185 | 57.1574 | 50.2616 | 59.1375 | 57.970946 |
M2-1 | 94 | 40.4703 | 42.909 | 34.9406 | 112.9317 | 119.9721 | 101.7199 | 25.189854 |
M2-1 | 95 | 32.2247 | 23.4849 | 24.6175 | 34.8958 | 28.9595 | 26.8251 | 70.138409 |
M2-1 | 96 | 20.668 | 23.1818 | 28.7744 | 93.0302 | 101.4748 | 115.0885 | -12.764415 |
M2-1 | 97 | 20.6971 | 23.0886 | 22.3287 | 91.7718 | 107.8933 | 111.4815 | -24.48889 |
M2-1 | 98 | 31.7401 | 31.9422 | 26.3181 | 11.23 | 12.3105 | 10.841 | 89.894868 |
M2-1 | 99 | 36.5257 | 33.5963 | 34.508 | 24.6096 | 22.7964 | 24.4523 | 81.83303 |
M2-1 | 100 | 27.784 | 30.3075 | 24.6241 | 109.3404 | 114.5398 | 97.2973 | -2.7115507 |
M2-1 | 101 | 28.8863 | 27.6648 | 28.6818 | 116.8763 | 120.2008 | 123.0177 | -11.756086 |
M2-1 | 102 | 25.2279 | 34.3368 | 30.4127 | 27.9522 | 36.2849 | 28.8609 | 72.630396 |
M2-1 | 103 | 22.6833 | 26.793 | 28.4628 | 84.1138 | 93.7308 | 93.3007 | 7.9744776 |
M2-1 | 104 | 33.2496 | 28.9952 | 28.0762 | 107.0015 | 96.3263 | 88.016 | 14.6754 |
M2-1 | 105 | 32.3711 | 26.2806 | 31.382 | 33.2508 | 28.4175 | 27.3049 | 73.85939 |
SH | SHsicontrol | ND | ND | ND | ND | ND | ND | ND |
SH | 106 | 0.0333 | 0.0333 | 0.0339 | 0.0369 | 0.0357 | 0.0357 | ND |
SH | 107 | 0.0284 | 0.0236 | 0.0248 | 0.0339 | 0.0303 | 0.0296 | ND |
SH | 108 | 0.0236 | 0.0224 | 0.0236 | 0.0309 | 0.0284 | 0.0254 | ND |
SH | 109 | 0.0236 | 0.0218 | 0.0206 | 0.0351 | 0.0327 | 0.0333 | ND |
L | Lsicontrol | 15.3543 | 15.6713 | 13.5671 | 138.9425 | 116.8406 | 124.1569 | 0% |
L | 110 | 16.3441 | 18.0024 | 18.1615 | 164.1764 | 165.4551 | 170.5465 | -11.799324 |
L | 111 | 14.7106 | 14.8183 | 13.9174 | 112.0454 | 104.3504 | 106.5387 | 12.761056 |
L | 112 | 8.0489 | 7.7386 | 8.5729 | 60.4607 | 62.4535 | 62.3652 | 10.732891 |
L | 113 | 7.0749 | 6.171 | 5.2127 | 84.5844 | 72.9152 | 62.1946 | -39.69105 |
L | 114 | 3.9797 | 4.1261 | 5.1661 | 50.3263 | 55.8094 | 59.3057 | -46.305228 |
L | 115 | 6.8081 | 7.2921 | 6.4898 | 97.8261 | 100.5111 | 79.4885 | -58.367048 |
L | 116 | 5.6126 | 6.0875 | 5.3155 | 57.1162 | 63.6412 | 54.0211 | -20.556183 |
L | 117 | 3.7909 | 3.7849 | 3.6046 | 47.9384 | 47.1059 | 41.742 | -43.593245 |
L | 118 | 9.7205 | 10.2971 | 9.6933 | 9.5554 | 9.0218 | 7.0718 | 89.867809 |
L | 119 | 12.7631 | 12.5084 | 12.4219 | 109.7966 | 112.026 | 99.7978 | -0.1444821 |
L | 120 | 16.8837 | 18.9625 | 18.7411 | 102.0466 | 102.9952 | 111.7556 | 31.88563 |
L | 121 | 22.235 | 20.5791 | 19.7654 | 10.0878 | 10.7484 | 8.4385 | 94.509535 |
L | 122 | 0.4846 | 0.4882 | 0.4725 | 2.6402 | 2.0437 | 2.0437 | 68.19647 |
L | 123 | 0.317 | 0.4102 | 0.32 | 3.2694 | 3.2422 | 3.529 | 34.490664 |
L | 124 | 0.357 | 0.4386 | 0.2916 | 4.0674 | 4.2465 | 4.5296 | 19.286327 |
L | 125 | 0.4162 | 0.3908 | 0.3848 | 4.9047 | 4.3614 | 4.3372 | 22.014464 |
L | 126 | 0.3128 | 0.2027 | 0.334 | 0.3896 | 0.2099 | 0.3436 | 92.414791 |
L | 127 | 0.2323 | 0.2396 | 0.2759 | 4.2072 | 3.4745 | 3.9349 | -6.1369834 |
L | 128 | 0.4937 | 0.3908 | 0.4834 | 5.5884 | 6.6175 | 7.6369 | 0.8890198 |
L | 129 | 0.4773 | 0.5372 | 0.4253 | 9.7847 | 9.7556 | 10.2118 | -41.185021 |
L | 130 | 0.3963 | 0.2547 | 0.2747 | 0.5052 | 0.5772 | 0.5221 | 88.157521 |
L | 131 | 0.3146 | 0.3086 | 0.3636 | 3.8333 | 4.1787 | 4.6518 | 12.31848 |
L | 132 | 7.0682 | 5.7445 | 6.603 | 30.6342 | 26.784 | 28.5233 | 20.487506 |
L | 133 | 4.624 | 5.1213 | 4.2834 | 21.4594 | 26.3478 | 23.4686 | 8.733757 |
L | 134 | 6.6114 | 5.0058 | 4.9973 | 22.5102 | 17.6533 | 19.1561 | 35.864802 |
L | 135 | 5.7675 | 5.4849 | 7.2552 | 24.2472 | 25.0531 | 32.0868 | 21.00657 |
L | 136 | 6.3694 | 7.2261 | 8.4053 | 30.7001 | 32.8376 | 41.2804 | 14.417827 |
L | 137 | 6.8867 | 5.4559 | 5.1728 | 44.3592 | 35.7017 | 35.5135 | -18.529674 |
L | 138 | 6.4227 | 5.5279 | 6.0548 | 6.5794 | 4.8219 | 4.5926 | 84.04352 |
L | 139 | 5.6737 | 6.7881 | 7.6405 | 21.5126 | 17.7658 | 23.2332 | 44.140073 |
L | 140 | 5.5122 | 6.1432 | 6.1958 | 28.1023 | 23.042 | 22.6173 | 25.775306 |
L | 141 | 3.6536 | 4.2471 | 3.5574 | 5.7336 | 4.1255 | 4.6186 | 77.302791 |
L | 142 | 0.6219 | 0.6516 | 0.6032 | 3.6306 | 2.6088 | 2.7733 | 1.8973635 |
L | 143 | 1.3026 | 0.8857 | 1.0606 | 0.6141 | 0.3521 | 0.5009 | 90.775475 |
L | 144 | 0.7472 | 0.6486 | 0.7768 | 4.7595 | 3.0801 | 3.2809 | -4.5598996 |
L | 145 | 0.9783 | 0.7302 | 1.5458 | 1.0315 | 0.6564 | 1.1592 | 82.128305 |
L | 146 | 0.6552 | 0.6903 | 0.9728 | 1.9433 | 1.6317 | 2.2821 | 48.390028 |
L | 147 | 0.5003 | 0.8071 | 0.8585 | 0.4568 | 0.7877 | 0.726 | 81.415167 |
L | 148 | 0.7079 | 0.7314 | 0.8343 | 1.4514 | 1.0878 | 1.0745 | 67.531767 |
L | 149 | 0.631 | 0.6274 | 0.562 | 1.3092 | 0.9862 | 1.3364 | 59.245486 |
L | 150 | 0.5257 | 0.5911 | 0.5197 | 0.1016 | 0.1047 | 0.0926 | 96.268955 |
L | 151 | 0.5161 | 0.8004 | 0.9638 | 0.1343 | 0.1174 | 0.1476 | 96.422926 |
L | 152 | 0.9335 | 0.9142 | 0.9855 | 3.3438 | 3.7365 | 5.1679 | 11.688827 |
L | 153 | 1.0715 | 0.821 | 1.6577 | 4.4347 | 3.7934 | 6.263 | 16.618606 |
L | 154 | 0.7242 | 0.7986 | 0.6026 | 2.4019 | 2.613 | 2.0286 | 32.30315 |
L | 155 | 0.925 | 0.6582 | 0.4719 | 3.1908 | 1.9088 | 1.8985 | 30.438682 |
L | 156 | 0.7581 | 0.6474 | 0.6334 | 0.7478 | 0.7127 | 0.6207 | 79.148442 |
L | 157 | 0.4701 | 0.706 | 0.6002 | 0.0847 | 0.092 | 0.0768 | 97.084707 |
L | 158 | 0.4447 | 0.7454 | 0.4937 | 0.6619 | 0.8071 | 0.4713 | 76.460404 |
L | 159 | 0.746 | 0.8355 | 0.8367 | 1.9596 | 1.8943 | 3.8629 | 34.812302 |
L | 160 | 0.6588 | 0.9595 | 0.8077 | 2.6547 | 5.2484 | 4.0184 | -19.850716 |
L | 161 | 0.6486 | 0.9257 | 0.945 | 3.0117 | 4.7311 | 3.8781 | -12.502042 |
L | 162 | 0.7647 | 0.4725 | 0.5378 | 3.0099 | 2.3456 | 2.7219 | -10.987421 |
L | 163 | 0.6177 | 0.4852 | 0.4187 | 0.4519 | 0.4072 | 0.3104 | 81.254361 |
L | 164 | 0.631 | 0.8119 | 0.7798 | 0.3618 | 0.4737 | 0.5911 | 84.346124 |
L | 165 | 0.6467 | 0.4677 | 0.5506 | 3.4352 | 2.4412 | 2.2204 | -18.604099 |
L | 166 | 0.8367 | 0.7702 | 0.8101 | 4.4691 | 2.9621 | 3.4485 | -9.7844413 |
L | 167 | 0.6213 | 0.6837 | 0.6238 | 3.9736 | 2.953 | 2.5664 | -20.037463 |
L | 168 | 0.8591 | 0.5935 | 0.7423 | 1.069 | 0.8089 | 0.7157 | 71.180344 |
L | 169 | 0.6171 | 0.677 | 0.608 | 1.3479 | 1.4883 | 1.2832 | 47.179666 |
L | 170 | 0.5512 | 0.6498 | 0.8361 | 2.2052 | 3.7734 | 3.8079 | -17.16977 |
L | 171 | 0.9293 | 0.8627 | 0.7266 | 3.0801 | 4.9658 | 2.8623 | -5.6317365 |
L | 172 | 2.0032 | 1.792 | 1.5464 | 12.1696 | 15.1583 | 10.2687 | -8.5798528 |
L | 173 | 1.8713 | 1.8325 | 1.4593 | 11.9215 | 10.6305 | 10.0569 | 2.5688896 |
L | 174 | 1.9723 | 2.1544 | 1.7696 | 12.2555 | 15.0336 | 12.9966 | -5.4006726 |
L | 175 | 2.2845 | 2.2736 | 1.737 | 14.6313 | 13.14 | 11.1925 | 4.515963 |
L | 176 | 2.2379 | 1.766 | 2.682 | 14.0784 | 12.1278 | 15.7657 | 3.1564295 |
L | 177 | 2.6209 | 2.2627 | 2.0733 | 14.86 | 13.82 | 12.2379 | 9.2660922 |
L | 178 | 1.8767 | 1.6843 | 1.5724 | 12.653 | 10.6928 | 10.3455 | -1.2475919 |
L | 179 | 1.9844 | 1.795 | 1.6287 | 12.6191 | 13.3905 | 11.0576 | -5.7345954 |
L | 180 | 2.4478 | 2.3777 | 2.4146 | 11.9863 | 10.6982 | 9.5481 | 31.321182 |
L | 181 | 1.5101 | 1.4405 | 1.9064 | 10.4411 | 11.2004 | 11.8973 | -6.5249787 |
L | 182 | 2.247 | 1.9142 | 2.5821 | 9.8597 | 8.3871 | 9.5233 | 36.470271 |
L | 183 | 1.9765 | 2.6795 | 2.3395 | 8.058 | 10.749 | 9.6431 | 37.261075 |
L | 184 | 2.5077 | 2.7921 | 2.9336 | 6.2999 | 6.2739 | 6.6713 | 63.941057 |
L | 185 | 3.0413 | 1.9983 | 2.319 | 11.6989 | 7.6248 | 9.7835 | 38.979288 |
L | 186 | 2.0044 | 1.5869 | 2.1677 | 13.0329 | 10.4792 | 12.4007 | 3.8001869 |
L | 187 | 2.1586 | 2.368 | 1.7188 | 13.1581 | 19.5391 | 14.2314 | -15.9176 |
L | 188 | 2.7037 | 2.6523 | 2.8235 | 11.1042 | 11.538 | 12.1393 | 34.401548 |
L | 189 | 2.0183 | 1.4992 | 2.1901 | 14.5236 | 12.1266 | 14.3954 | -10.939223 |
L | 190 | 2.377 | 2.1502 | 2.077 | 13.1279 | 11.5004 | 12.6022 | 13.03376 |
L | 191 | 2.8393 | 2.5688 | 2.4224 | 17.2576 | 15.5225 | 16.6073 | 2.7031659 |
L | 192 | 2.4872 | 1.8967 | 2.1217 | 14.4813 | 10.6032 | 11.3625 | 13.573591 |
L | 193 | 2.1544 | 1.7672 | 1.6704 | 15.027 | 13.6294 | 11.1477 | -9.8076724 |
L | 194 | 3.4201 | 2.5882 | 2.5253 | 23.5502 | 16.6369 | 15.3428 | -0.3844975 |
L | 195 | 2.8018 | 2.6305 | 2.247 | 18.415 | 17.2213 | 13.3796 | 15.5337526 |
L | 196 | 2.5337 | 2.2512 | 3.126 | 13.4286 | 15.7524 | 17.1917 | 9.5708334 |
L | 197 | 2.898 | 3.8926 | 3.5477 | 6.9103 | 10.8767 | 6.9914 | 63.026023 |
L | 198 | 2.6227 | 2.2089 | 2.6789 | 8.8384 | 7.4633 | 7.8263 | 50.440774 |
L | 199 | 2.0824 | 1.7696 | 2.0667 | 9.8337 | 9.8119 | 9.3515 | 24.42115 |
L | 200 | 2.2567 | 2.6426 | 2.5846 | 9.4743 | 11.6293 | 11.3843 | 33.032251 |
ND是无数据
对本实施例和表37所示数据,对靶花虫萤光素酶表现40%或更高沉默的siRNA被认为是有效siRNA。基于表37所示数据,以下57种siRNA认为是有效siRNA:1、6、17、18、28、32、33、34、45、47、48、59、60、64、66、70、73、78、80、81、85、87、88、89、90、93、95、98、99、102、105、118、121、122、126、130、138、139、141、143、145、146、147、148、149、150、151、156、157、158、163、164、168、169、184、197和198。在第二筛选进一步表征57种鉴别的有效siRNA,以确定57种中的哪些能有效诱导靶hMPV转录子直接降解。
筛选了57种siRNA(序列见下表38)诱导靶hMPV RNA降解的能力,该靶hMPV RNA转录自以下一种靶病毒基因:N基因、P基因、M基因、F基因、M2-1基因、M2-2基因或L基因。总之,以上公开了对本实施例用于转染siRNA和感染培养物中细胞的方法。
DharmaconTM的Sicontrol用作对照siRNA。以定量实时PCR来确定病毒RNA拷贝数,通过比较以siRNA转染的hMPV感染细胞分离的RNA的复制动力学与已知标准,该标准即以已知拷贝数的模板进行实时PCR所产生的复制动力学(Deffrasnes C,等,J Clin.Microbiol.43,488-90(2005))。从140μl感染细胞培养上清液提取病毒RNA,用作反转录酶和实时PCR的起始材料。较低病毒RNA拷贝数表示更有效的siRNA。而且,较大百分比的抑制表示更有效的siRNA。
表38.靶向人类偏肺病毒基因转录子的57种siRNA的核苷酸序列
siRNA在病毒靶序列中的5’核苷酸位置 | siRNA核苷酸序列 | SEQ ID | hMPV靶基因 |
60 | cuucaagggauucaccuaa | (SEQ ID NO:10885) | N |
111 | gagucucaauacacaauaa | (SEQ ID NO:10890) | N |
269 | ggcucuaggaucagaaaga | (SEQ ID NO:10904) | N |
280 | cagaaagaguacaacagau | (SEQ ID NO:10905) | N |
435 | gacaaagaggcaagaaaaa | (SEQ ID NO:10928) | N |
506 | gccuucagcaccagacaca | (SEQ ID NO:10938) | N |
513 | gcaccagacacaccaauaa | (SEQ ID NO:10939) | N |
514 | caccagacacaccaauaau | (SEQ ID NO:10940) | N |
763 | gaagcaaagcagaaaguuu | (SEQ ID NO:10959) | N |
816 | ggucaaacaaugcuaagggu | (SEQ ID NO:10966) | N |
846 | gccagaucaucuaacaaca | (SEQ ID NO:10968) | N |
1297 | ggguaaugaagcagcaaaa | (SEQ ID NO:11282) | P |
1319 | gcagaagcuuuccagaaau | (SEQ ID NO:11283) | P |
1724 | gcagaguccucaaucuuaa | (SEQ ID NO:11287) | P |
1898 | gguauaagagaagaacuaa | (SEQ ID NO:11289) | P |
2196 | ggacacuuaucaaggcauu | (SEQ ID NO:11293) | M |
2542 | ccauaugggauggugucaa | (SEQ ID NO:11296) | M |
3449 | ggcuugagagugaagugaa | (SEQ ID NO:11301) | F |
3631 | gcugucagcuucagucaau | (SEQ ID NO:11303) | F |
3697 | gggauaacaccagcaauau | (SEQ ID NO:11304) | F |
4010 | ccacuguuuacuacccaaa | (SEQ ID NO:11308) | F |
4154 | gcacaggaagacacccuau | (SEQ ID NO:11310) | F |
4356 | gggugaacagcauguaaua | (SEQ ID NO:11311) | F |
4522 | ggaaacacuggcuucauua | (SEQ ID NO:11312) | F |
4589 | gcaucaucaucauaaucaa | (SEQ ID NO:11313) | F |
4716 | cguaaagcuccaugcaaau | (SEQ ID NO:11316) | M2-1 |
4993 | gcuauagucuacauaacau | (SEQ ID NO:11318) | N2-1 |
5104 | ccuauauggagaugagcaa | (SEQ ID NO:11321) | M2-1 |
5160 | ccaagagaaaaacuggaaa | (SEQ ID NO:11322) | M2-1 |
5254 | gcacuaaucaagugcagua | (SEQ ID NO:11325) | M2-1 |
5422 | gcuuacuuaaguuaguaaa | (SEQIDNO:11328) | M2-2 |
7721 | ccaacuguuaacauggaaa | (SEQ ID NO:11341) | L |
7839 | gguauguuaacuaauaaau | (SEQ ID NO:11344) | L |
8279 | ggagagcuuaacagaacua | (SEQ ID NO:11345) | L |
8766 | gggaaagaaagagaauuaa | (SEQ ID NO:11349) | L |
8991 | gcaagagccuccauaguaa | (SEQ ID NO:11353) | L |
9933 | gcaaucagccauguggauu | (SEQ ID NO:11361) | L |
10008 | gccuuauuaucuauagaaa | (SEQ ID NO:11362) | L |
10038 | gcuacauuaacaacacuaa | (SEQ ID NO:11364) | L |
10173 | gcuauacacuauagcagaa | (SEQ ID NO:11366) | L |
10350 | gcuaucaauggugaagaua | (SEQ ID NO:11368) | L |
10404 | ggguuguuaucuaggauau | (SEQ ID NO:11369) | L |
10581 | gcgacuaguucucauuuaa | (SEQ ID NO:11370) | L |
10582 | cgacuaguucucauuuaaa | (SEQ ID NO:11371) | L |
10670 | gguaggaucaagcacucaa | (SEQ ID NO:11372) | L |
10681 | gcacucaagagaaaaaauu | (SEQ ID NO:11373) | L |
10704 | ccuguuuauaacagacaaa | (SEQ ID NO:11374) | L |
10869 | ccaagauuuaugaguguaa | (SEQ ID NO:11379) | L |
10944 | ccagcuuauaggacaacaa | (SEQ ID NO:11380) | L |
10947 | gcuuauaggacaacaaauu | (SEQ ID NO:11381) | L |
11364 | gcaugccauugguguggaa | (SEQ ID NO:11386) | L |
11369 | ccauugguguggaauauua | (SEQ ID NO:11387) | L |
11732 | gcaugaaguacccuggauu | (SEQ ID NO:11391) | L |
11764 | gggagcuaguugaaauuaa | (SEQ ID NO:11392) | L |
12394 | gggacuugauacacagaau | (SEQ ID NO:11407) | L |
13061 | ccugggaaaugcagagaua | (SEQ ID NO:11420) | L |
13064 | gggaaaugcagagauaaaa | (SEQ ID NO:11421) | L |
表98的数据概述了57种不同siRNA对转染了10nM siRNA的细胞中siRNA靶向hMPV转录子的病毒RNA拷贝数的单独效应。每个“PCR结果组”代表由实时PCR一起分析的57种siRNA子集的结果。从表39的数据,有10个“PCR结果组”。从三个单独PCR推导平均病毒RNA拷贝数。每个siRNA减少病毒RNA拷贝数的效力表示为抑制百分比(“%抑制”)。为了计算57种不同siRNA分别的抑制百分比(“%抑制”),“PCR结果组”内每种siRNA的平均病毒RNA拷贝数除以同一“PCR结果组”sicontrol的平均病毒RNA拷贝数。该数字在表39中是标题为“siRNA∶sicontrol比”那一栏。将该数字乘以100而转化为百分比,然而用100%减去该结果而得到对每种siRNA的抑制百分比(指标题为“%抑制”的栏)。较高的抑制百分比表示该siRNA具有较高的减少靶hMPV转录子的病毒RNA拷贝数的能力,从而可能是病毒复制更有效的抑制剂。负的抑制百分比表示与对照siRNA相比病毒RNA拷贝数增加。
表39.57种不同siRNA对转染了10nM siRNA的细胞中hMPV靶向RNA的RNA拷贝数的效应
组1的PCR结果 | siRNA# | 三个不同PCR的病毒RNA拷贝数 | 平均病毒RNA拷贝数 | SD | siRNA∶sicontrol比 | %抑制 | ||
1 | 2 | 3 | ||||||
1 | 8.050E+03 | ND | ND | 8.050E+03 | #DIV/0! | 0.03 | 97% | |
6 | 1.305E+05 | ND | 2.292E+03 | 6.640E+04 | 9.066E+04 | 0.22 | 78% | |
17 | 6.010E+05 | 5.517E+05 | 5.862E+05 | 5.796E+05 | 2.530E+04 | 1.91 | -91% | |
18 | 3.894E+05 | 3.281E+05 | 4.095E+05 | 3.757E+05 | 4.240E+04 | 1.24 | -24% | |
28 | 3.314E+04 | 2.726E+05 | 4.852E+05 | 2.636E+05 | 2.262E+05 | 0.87 | 13% | |
32 | 5.021E+04 | 2.589E+04 | 4.010E+04 | 3.873E+04 | 1.222E+04 | 0.13 | 87% | |
icontrol | 2.290E+05 | 2.482E+05 | 4.321E+05 | 3.031E+05 | 1.121E+05 | 1.00 | 0% | |
无siRNA | ND | 1.511E+05 | 7.041E+04 | 1.108E+05 | 5.706E+04 | 0.37 | 63% | |
组2的PCR结果 | 33 | 7.328E+03 | 2.186E+04 | 3.600E+04 | 2.173E+04 | 1.434E+04 | 0.15 | 85% |
34 | 1.170E+05 | 1.212E+05 | 7.694E+04 | 1.050E+05 | 2.443E+04 | 0.71 | 29% | |
45 | 1.359E+04 | 4.752E+03 | 8.497E+03 | 8.946E+03 | 4.436E+03 | 0.06 | 94% | |
47 | 3.141E+04 | 4.034E+04 | 5.323E+04 | 4.166E+04 | 1.097E+04 | 0.28 | 72% | |
48 | 5.712E+04 | 9.462E+04 | ND | 7.587E+04 | 2.652E+04 | 0.51 | 49% | |
59 | 8.746E+03 | 6.237E+03 | 2.844E+04 | 1.447E+04 | 1.216E+04 | 0.10 | 90% | |
sicontrol | 1.405E+05 | 1.570E+05 | 1.479E+05 | 1.485E+05 | 8.265E+03 | 1.00 | 0% | |
无siRNA | 1.952E+05 | ND | 1.814E+05 | 1.883E+05 | 9.758E+03 | 1.27 | -27% | |
组3的PCR结果 | 60 | 2.941E+04 | 3.866E+04 | 3.815E+04 | 3.541E+04 | 5.200E+03 | 0.15 | 85% |
64 | 7.899E+05 | 4.453E+05 | 7.872E+05 | 6.741E+05 | 1.982E+05 | 2.86 | -186% | |
66 | 3.961E+05 | 4.259E+05 | 3.853E+05 | 4.024E+05 | 2.103E+04 | 1.71 | -71% | |
70 | 7.425E+04 | 4.081E+04 | 1.290E+05 | 8.135E+04 | 4.452E+04 | 0.35 | 65% | |
73 | 1.96E+05 | 2.31E+05 | 2.018E+05 | 2.099E+05 | 1.849E+04 | 0.89 | 11% | |
78 | ND | 5.741E+05 | 6.987E+04 | 3.220E+05 | 3.565E+05 | 1.37 | -37% | |
sicontrol | 3.209E+05 | 1.070E+05 | 2.791E+05 | 2.357E+05 | 1.134E+05 | 1.00 | 0% | |
无siRNA | 1.032E+06 | 1.234E+06 | 1.153E+06 | 1.140E+06 | 1.017E+05 | 4.84 | -384% | |
组4的PCR结果 | 80 | 1.952E+05 | 2.341E+05 | 1.820E+05 | 2.038E+05 | 2.700E+04 | 0.90 | 10% |
81 | 5.438E+05 | 2.847E+05 | 4.256E+05 | 4.180E+05 | 1.297E+05 | 1.85 | -85% | |
85 | 3.419E+05 | 1.860E+05 | 2.185E+05 | 2.488E+05 | 8.225E+04 | 1.10 | -10% | |
87 | 3.616E+05 | 3.363E+05 | ND | 3.490E+05 | 1.789E+04 | 1.54 | -54% | |
88 | 7.625E+05 | 4.093E+05 | 2.298E+04 | 3.983E+05 | 3.699E+05 | 1.76 | -76% | |
89 | 2.372E+05 | 2.484E+05 | 4.596E+05 | 3.151E+05 | 1.253E+05 | 1.39 | -39% | |
sicontrol | 4.277E+05 | 1.088E+04 | 2.409E+05 | 2.265E+05 | 2.088E+05 | 1.00 | 0% | |
无siRNA | 2.213E+05 | 1.038E+06 | 8.192E+05 | 6.928E+05 | 4.228E+05 | 3.06 | -206% | |
组5的PCR结果 | 90 | 7.341E+05 | 6.142E+05 | 5.923E+05 | 6.469E+05 | 7.634E+04 | 0.95 | 5% |
93 | 4.657E+05 | 2.050E+05 | 6.303E+05 | 4.337E+05 | 2.145E+05 | 0.64 | 36% | |
95 | 8.222E+05 | 8.630E+05 | 8.650E+05 | 8.501E+05 | 2.415E+04 | 1.25 | -25% | |
98 | 3.501E+05 | 2.234E+05 | 3.626E+05 | 3.120E+05 | 7.701E+04 | 0.46 | 54% | |
99 | 1.293E+06 | 6.597E+05 | 7.184E+05 | 8.904E+05 | 3.499E+05 | 1.31 | -31% | |
102 | 1.448E+06 | 9.564E+05 | 2.281E+06 | 1.562E+06 | 6.696E+05 | 2.30 | -130% | |
sicontrol | 8.332E+05 | 6.529E+05 | 5.521E+05 | 6.794E+05 | 1.424E+05 | 1.00 | 0% | |
无siRNA | 8.604E+05 | 4.320E+05 | 7.782E+05 | 6.902E+05 | 2.274E+05 | 1.02 | -2% | |
组6的PCR结果 | 105 | 1.861E+05 | 5.984E+05 | 5.187E+05 | 4.344E+05 | 2.187E+05 | 0.78 | 22% |
118 | 6.316E+04 | 8.239E+04 | 6.691E+04 | 7.082E+04 | 1.019E+04 | 0.13 | 87% | |
121 | 4.263E+05 | 1.561E+06 | 7.021E+05 | 8.965E+05 | 5.918E+05 | 1.61 | -51% | |
122 | 4.748E+05 | 4.637E+05 | 7.151E+05 | 5.512E+05 | 1.421E+05 | 0.99 | 1% | |
126 | 9.507E+04 | 6.768E+04 | 7.251E+04 | 7.842E+04 | 1.462E+04 | 0.14 | 86% | |
130 | 7.206E+05 | 5.569E+05 | 1.267E+06 | 8.482E+05 | 3.718E+05 | 1.53 | -53% | |
sicontrol | 4.939E+05 | 6.908E+05 | 4.835E+05 | 5.561E+05 | 1.168E+05 | 1.00 | 0% | |
无siRNA | 9.990E+05 | 7.928E+05 | 6.867E+05 | 8.262E+05 | 1.588E+05 | 1.49 | -49% | |
组7的PCR结果 | 138 | 1.339E+05 | 1.687E+05 | 1.252E+05 | 1.426E+05 | 2.302E+04 | 0.89 | 11% |
139 | 8.793E+04 | 6.992E+04 | 1.275E+05 | 9.512E+04 | 2.946E+04 | 0.60 | 40% | |
141 | 1.140E+05 | 1.016E+05 | 1.277E+05 | 1.144E+05 | 1.306E+04 | 0.72 | 28% | |
143 | 6.155E+04 | 6.303E+04 | 6.659E+04 | 6.372E+04 | 2.591E+03 | 0.40 | 60% | |
145 | 4.429E+04 | 2.153E+05 | 8.886E+04 | 1.162E+05 | 8.871E+04 | 0.73 | 27% | |
146 | 1.625E+05 | 1.623E+05 | 1.954E+05 | 1.734E+05 | 1.905E+04 | 1.09 | -9% | |
sicontrol | 2.484E+05 | 1280E+05 | 1.021E+05 | 1.595E+05 | 7.807E+04 | 1.00 | 0% | |
无siRNA | 1.071E+05 | 7.273E+04 | 1.292E+05 | 1.030E+05 | 2.846E+04 | 0.65 | 35% | |
组8的PCR结果 | 147 | 1.779E+05 | 1.606E+05 | 1.442E+05 | 1.609E+05 | 1.685E+04 | 0.62 | 38% |
148 | 1.630E+05 | 1.917E+05 | 1.733E+05 | 1.760E+05 | 1.454E+04 | 0.68 | 32% | |
149 | 7.237E+04 | 7.417E+04 | 7.042E+04 | 7.232E+04 | 1.875E+03 | 0.28 | 72% |
8 | 150 | 3.667E+04 | 6.480E+02 | 7.660E+04 | 3.797E+04 | 3.799E+04 | 0.15 | 85% |
151 | 4.377E+04 | 6.663E+04 | 5.460E+04 | 5.500E+04 | 1.144E+04 | 0.21 | 79% | |
156 | 1.989E+05 | 2.3 19E+05 | 3.107E+05 | 2.472E+05 | 5.744E+04 | 0.96 | 4% | |
sicontrol | 1.922E+05 | 1.854E+05 | 3.950E+05 | 2.575E+05 | 1.191E+05 | 1.00 | 0% | |
无siRNA | 1.51 6E+05 | 2.667E+05 | 2.491E+05 | 2.225E+05 | 6.200E+04 | 0.86 | 14% | |
组9的PCR结果 | 157 | 1.251E+05 | 8.337E+04 | 1.102E+05 | 1.062E+05 | 2.115E+04 | 0.51 | 49% |
158 | 1.321E+05 | 1.709E+05 | 1.452E+05 | 1.494E+05 | 1.974E+04 | 0.72 | 28% | |
163 | 3.724E+04 | 2.477E+04 | 3.181E+04 | 3.127E+04 | 6.252E+03 | 0.15 | 85% | |
164 | 1.478E+04 | 1.923E+04 | 1.439E+04 | 1.613E+04 | 2.689E+03 | 0.08 | 92% | |
168 | 6.360E+04 | 7.421E+04 | 4.968E+04 | 6.250E+04 | 1.230E+04 | 0.30 | 70% | |
169 | 2.585E+05 | 2.151E+05 | 2.128E+05 | 2.288E+05 | 2.575E+04 | 1.10 | -10% | |
sicontrol | 1.432E+05 | 3.689E+05 | 1.100E+05 | 2.074E+05 | 1.409E+05 | 1.00 | 0% | |
无siRNA | 1.438E+05 | 1.446E+05 | 3.690E+05 | 2.191E+05 | 1.298E+05 | 1.06 | -6% | |
组10的PCR结果 | 184 | 1.978E+05 | 6.666E+04 | 6.764E+04 | 1.107E+05 | 7.543E+04 | 0.64 | 36% |
197 | 3.464E+04 | 8.338E+04 | 8.075E+04 | 6.626E+04 | 2.741E+04 | 0.38 | 62% | |
198 | 9.685E+04 | 1.193E+05 | 1.606E+05 | 1.256E+05 | 3.234E+04 | 0.73 | 27% | |
sicontrol | 1.467E+05 | 1.857E+05 | 1.841E+05 | 1.722E+05 | 2.207E+04 | 1.00 | 0% | |
无siRNA | 7.338E+04 | 6.970E+04 | 6.507E+04 | 6.938E+04 | 4.164E+03 | 0.40 | 60% |
ND是无数据;SD是标准偏差
表39的数据表示19种siRNA以10 nM浓度表现50%或更高抑制病毒基因转录子,其中6种siRNA靶向N转录子,2种siRNA靶向P转录子,1种siRNA靶向M转录子,1种siRNA靶向M2转录子,9种siRNA靶向L转录子。10组PCR结果组中无siRNA对照表现从-384%至63%的抑制百分比。sicontrol的病毒RNA拷贝数值作为每种PCR结果组的基线,并被标准化至0%抑制。以10nM浓度转染的57种siRNA表现从-186%至97%的抑制百分比,说明鉴别能够减少靶转录子RNA拷贝数的siRNA需要基于病毒靶转录子的“保守”区核苷酸序列的超过一个选择。以10nM浓度证明抑制百分比为50%或更高的siRNA认为是有效减少病毒RNA拷贝数的(显示60%和63%的两个无siRNA对照是溢出值,不考虑)。表现50%或更高抑制的siRNA包括siRNA 1、6、32、33、45、48、59、60、70、98、118、126、143、149、150、151、163、164、168和197。
表40的数据显示了57种不同siRNA对转染了100 nM siRNA(与此前数据系列表39相比10倍的siRNA)的细胞中siRNA靶向hMPV转录子的病毒RNA拷贝数的单独效应。每个PCR结果组代表由实时PCR一起分析的57种siRNA子集的结果。从表40的数据,有6个PCR结果组。每个siRNA减少病毒RNA拷贝数的效力表示为抑制百分比(“%抑制”)。从两个单独PCR推导平均病毒RNA拷贝数。为了计算57种不同siRNA分别的抑制百分比(%抑制),PCR结果组内每种siRNA的平均病毒RNA拷贝数除以同一PCR结果组无siRNA的平均病毒RNA拷贝数。该数字在表40中是标题为“siRNA∶无siRNA比”那一栏。将该数字乘以100而转化为百分比,然而用100%减去该结果而得到对每种siRNA的抑制百分比(指标题为“%抑制”的栏)。较高的抑制百分比表示该siRNA具有较高的减少靶hMPV转录子的病毒RNA拷贝数的能力,从而可能是病毒复制更有效的抑制剂。负的抑制百分比表示与对照siRNA相比病毒RNA拷贝数增加。
表40.57种不同siRNA对转染了100nM siRNA的细胞中hMPV靶向RNA的RNA拷贝数的效应
组1的PCR结果 | siRNA# | 两个不同PCR的病毒RNA拷贝数 | 平均病毒RNA拷贝数 | SD | siRNA∶无RNA比 | %抑制 | |
1 | 2 | ||||||
1 | 3.701E+04 | 1.134E+04 | 2.418E+04 | 1.82E+04 | 0.06 | 94% | |
6 | 2.907E+05 | 1.600E+05 | 2.254E+05 | 9.24E+04 | 0.52 | 48% | |
17 | 7.855E+05 | 5.195E+05 | 6.525E+05 | 1.88E+05 | 1.52 | -52% | |
18 | 3.411E+05 | 6.491E+05 | 4.951E+05 | 2.18E+05 | 1.15 | -15% | |
28 | 6.327E+05 | 8.135E+05 | 7.231E+05 | 1.28E+05 | 1.68 | -68% | |
32 | 2.343E+04 | 2.969E+04 | 2.656E+04 | 4.43E+03 | 0.06 | 94% | |
33 | 1.647E+04 | 1.694E+04 | 1.671E+04 | 3.32E+02 | 0.04 | 96% | |
34 | 3.274E+05 | 5.908E+05 | 4.591E+05 | 1.86E+05 | 1.07 | -7% | |
45 | 8.419E+03 | 1.862E+04 | 1.352E+04 | 7.21E+03 | 0.03 | 97% | |
47 | 6.430E+04 | 1.277E+05 | 9.600E+04 | 4.48E+04 | 0.22 | 78% | |
sicontrol | 7.660E+05 | ND | 7.660E+05 | ND | 1.78 | -78% | |
无siRNA | 4.303E+05 | ND | 4.303E+05 | ND | 1.00 | 0% | |
PCR | 48 | 6.894E+04 | 9.162E+04 | 8.028E+04 | 1.60E+04 | 0.92 | 8% |
组2的PCR结果 | 59 | 9.888E+03 | 1.083E+04 | 1.036E+04 | 6.66E+02 | 0.12 | 88% |
60 | 1.973E+04 | 7.538E+03 | 1.363E+04 | 8.62E+03 | 0.16 | 84% | |
64 | 2.592E+05 | 2.777E+05 | 2.685E+05 | 1.31E+04 | 3.08 | -208% | |
66 | 1.529E+05 | 7.619E+04 | 1.145E+05 | 5.42E+04 | 1.31 | -31% | |
70 | 5.369E+04 | 5.627E+04 | 5.498E+04 | 1.82E+03 | 0.63 | 37% | |
73 | 3.463E+04 | 8.408E+04 | 5.936E+04 | 3.50E+04 | 0.68 | 32% | |
78 | 1.058E+05 | 2.303E+05 | 1.681E+05 | 8.80E+04 | 1.93 | -93% | |
80 | 5.007E+04 | 4.058E+04 | 4.533E+04 | 6.71E+03 | 0.52 | 48% | |
81 | 6.689E+04 | 1.969E+05 | 1.319E+05 | 9.19E+04 | 1.51 | -51% | |
sicontrol | 1.629E+05 | ND | 1.629E+05 | ND | 1.87 | -87% | |
无siRNA | 8.716E+04 | ND | 8.716E+04 | ND | 1.00 | 0% | |
组3的PCR结果 | 85 | 2.370E+05 | 9.781E+05 | 6.076E+05 | 5.24E+05 | 2.07 | -107% |
87 | 1.439E+05 | 1.298E+05 | 1.369E+05 | 9.97E+03 | 0.47 | 53% | |
88 | 1.430E+05 | 2.324E+05 | 1.877E+05 | 6.32E+04 | 0.64 | 36% | |
89 | 1.207E+05 | 1.024E+05 | 1.116E+05 | 1.29E+04 | 0.38 | 62% | |
90 | 1.285E+05 | 2.080E+05 | 1.683E+05 | 5.62E+04 | 0.57 | 43% | |
93 | 1.622E+05 | 1.628E+05 | 1.625E+05 | 4.24E+02 | 0.55 | 45% | |
95 | 2.562E+05 | 2.235E+05 | 2.399E+05 | 2.31E+04 | 0.82 | 18% | |
98 | 1.462E+05 | 8.387E+04 | 1.150E+05 | 4.41E+04 | 0.39 | 61% | |
99 | 4.047E+05 | 3.334E+05 | 3.691E+05 | 5.04E+04 | 1.26 | -26% | |
sicontrol | 1.983E+05 | ND | 1.983E+05 | ND | 0.68 | 32% | |
无siRNA | 2.331E+05 | 3.525E+05 | 2.928E+05 | 8.44E+04 | 1.00 | 0% | |
组4的PCR结果 | 102 | 3.121E+05 | 1.710E+05 | 2.416E+05 | 9.98E+04 | 0.47 | 53% |
105 | 2.041E+05 | 2.426E+05 | 2.234E+05 | 2.72E+04 | 0.44 | 56% | |
118 | 8.322E+04 | 6.781E+04 | 7.552E+04 | 1.09E+04 | 0.15 | 85% | |
121 | 2.18E+05 | 3.275E+05 | 2.732E+05 | 7.68E+04 | 0.53 | 47% | |
122 | 2351E+05 | 2.788E+05 | 2.570E+05 | 3.09E+04 | 0.50 | 50% | |
126 | 4.851E+04 | 6.012E+04 | 5.432E+04 | 8.21E+03 | 0.11 | 89% | |
130 | 1.990E+05 | 2.836E+05 | 2.413E+05 | 5.98E+04 | 0.47 | 53% | |
138 | 4.972E+05 | 5.052E+05 | 5.012E+05 | 5.66E+03 | 0.98 | 2% | |
139 | 4.323E+05 | 5.880E+05 | 5.102E+05 | 1.10E+05 | 0.99 | 1% | |
sicontrol | 5.693E+05 | ND | 5.693E+05 | ND | 1.11 | -11% | |
无siRNA | 3.044E+05 | 7.224E+05 | 5.134E+05 | 2.96E+05 | 1.00 | 0% | |
组5的PCR结果 | 141 | 3.845E+05 | 3.835E+05 | 3.840E+05 | 7.07E+02 | 1.14 | -14% |
143 | 1.913E+05 | 2.214E+05 | 2.064E+05 | 2.13E+04 | 0.61 | 39% | |
145 | 2.902E+05 | 1.968E+05 | 1.968E+05 | 6.60E+04 | 0.58 | 42% | |
146 | 2.519E+05 | 5.554E+05 | 4.037E+05 | 2.15E+05 | 1.20 | -20% | |
147 | 3.821E+05 | 3.954E+05 | 3.888E+05 | 9.40E+03 | 1.15 | -15% | |
148 | 4.782E+05 | ND | 4.782E+05 | ND | 1.42 | -42% | |
149 | 1.933E+05 | 1.449E+05 | 1.691E+05 | 3.42E+04 | 0.50 | 50% | |
150 | 1.969E+05 | 1.215E+05 | 1.592E+05 | 5.33E+04 | 0.47 | 53% | |
151 | 1.267E+05 | 7.209E+04 | 9.940E+04 | 3.86E+04 | 0.29 | 71% | |
156 | 4.391E+05 | ND | 4.391E+05 | ND | 1.30 | -30% | |
sicontrol | 2.963E++05 | ND | 2.963E+05 | ND | 0.88 | 12% | |
无siRNA | 2.970E+05 | 3.773E+05 | 3.372E+05 | 5.68E+04 | 1.00 | 0% | |
组6的PCR结果 | 157 | 3.186E+05 | 1.685E+05 | 2.436E+05 | 1.06E+05 | 0.32 | 68% |
158 | 3.304E+05 | 3.789E+05 | 3.547E+05 | 3.43E+04 | 0.46 | 54% | |
163 | 9.886E+04 | 1.176E+05 | 1.176E+05 | 1.33E+04 | 0.15 | 85% |
164 | 9.691E+04 | 1.317E+05 | 1.143E+05 | 2.46E+04 | 0.15 | 85% | |
168 | 3.521E+05 | 2.240E+05 | 2.881E+05 | 9.06E+04 | 0.38 | 62% | |
169 | 4.458E+05 | 9.643E+05 | 7.051E+05 | 3.67E+05 | 0.92 | 8% | |
184 | 3.440E+05 | 1.789E+05 | 2.615E+05 | 1.17E+05 | 0.34 | 66% | |
197 | 1.713E+05 | 1.475E+05 | 1.594E+05 | 1.68E+04 | 0.21 | 79% | |
198 | 2.827E+05 | 4.828E+05 | 3.828E+05 | 1.41E+05 | 0.50 | 50% | |
156 | 6.155E+05 | ND | 6.155E+05 | ND | 0.81 | 19% | |
无siRNA | 5.505E+05 | 9.779E+05 | 7.642E+05 | 3.02E+05 | 1.00 | 0% | |
ND是无数据;SD是标准偏差
表40的数据表示27种siRNA表现50%或更高抑制hMPV病毒基因体外表达,其中5种siRNA靶向N转录子,2种siRNA靶向P转录子,2种siRNA靶向F转录子,3种siRNA靶向M2转录子,15种siRNA靶向L转录子。总之,表43中所示的细胞转染/病毒感染的定量PCR结果与萤光素酶报告检测结果一致。5组PCR结果组中sicontrol对照表现从-87%至32%的抑制百分比。这与表42中sicontrol形成对比,在那里sicontrol作为计算抑制百分比的基线值。该数据组中,无siRNA对每种PCR结果组作为基线,被标准化至0%抑制。以100nM浓度转染的57种siRNA表现从-208%至97%的抑制百分比,说明鉴别能够减少靶病毒转录子RNA拷贝数的siRNA需要基于病毒靶转录子的“保守”区核苷酸序列的超过一个选择。基于sicontrol观察到的抑制百分比(即,32%抑制),以100nM浓度证明抑制百分比为50%或更高的siRNA认为是有效减少病毒RNA拷贝数的。表现50%或更高抑制的siRNA包括siRNA1、32、33、45、47、59、60、87、89、98、102、105、118、122、126、130、149、150、151、157、158、163、164、168、184、197和198。
表39和40的数据证明在10nM或100nM浓度或两种浓度选择siRNA表现出有效减少靶hMPV转录子RNA拷贝数的能力。
实施例31:多病毒靶向
本实施例证明,能够介导hMPV靶RNA显著降解的siRNA也能降解RSV病毒RNA。使用此前所述的一般细胞培养和转染步骤。以定量实时PCR来确定病毒RNA拷贝数,通过比较以siRNA转染的RSV感染细胞分离的RNA的复制动力学与已知标准,该标准即以已知拷贝数的模板进行实时PCR所产生的复制动力学(Defeasnes C,等,J Clin.Microbiol.43,488-90(2005))。较低病毒RNA拷贝数表示更有效的siRNA。而且,较大百分比的抑制表示更有效的siRNA。
对表现出有效减少hMPV的L转录子的病毒拷贝数能力的siRNA 118、126、150、151和158评价了其对RSV靶RNA的相同能力。每种siRNA以10nM转染。数据显示于表41。
表41.6种不同siRNA对转染了10nM siRNA的细胞中RSV靶向转录子的RNA拷贝数的效应
siRNA# | 三个不同PCR的病毒RNA拷贝数 | 平均病毒拷贝数 | SD | siRNA∶sicontrol比 | %抑制 | ||
1 | 2 | 3 | |||||
118 | 1.852E+06 | 2.510E+06 | 2.055E+06 | 2.139E+06 | 3.368E+05 | 1.75 | -75% |
126 | 1.979E+06 | 1.222E+06 | 1.305E+06 | 1.502E+06 | 4.153E+05 | 1.23 | -23% |
150 | 1.839E+06 | 2.164E+06 | 1.752E+06 | 1.918E+06 | 2.171E+05 | 1.57 | -57% |
151 | 1.073E+06 | 2.469E+06 | 9.120E+05 | 1.484E+06 | 8.561E+05 | 1.22 | -22% |
158 | 1.367E+06 | 6.831E+05 | 9.153E+05 | 9.883E+05 | 3.475E+05 | 0.81 | 19% |
sicontrol | 1.258E+06 | 1.104E+06 | 1.299E+06 | 1.221E+06 | 1.029E+05 | 1.00 | 0% |
无siRNA | 1.149E+06 | 1.741E+06 | 1.259E+06 | 1.383E+06 | 3.147E+05 | 1.13 | -13% |
表41的数据表示,siRNA158表现降解RSV转录子的能力,测量为约20%抑制RSV病毒拷贝数。这些数据表示可制备能够降解来自宽范围病毒家族的病毒转录子的多-病毒靶向siRNA。
尽管参考特定实施方案描述了本发明,本领域技术人员应理解对本发明可进行各种改变,可取代各等同物而不偏离本发明的主旨和范围。此外,对本发明的特定情形、材料、组合物、工艺、工艺步骤可进行许多改进以适合本发明的目标、主旨和范围。所有这些改进都包括在如下权利要求的范围内。
Claims (81)
1.一种诱导RNAi的实体,其靶向呼吸道病毒的转录子,其中所述诱导RNAi的实体长度在约15和约60个核苷酸之间,并包括:
a.第一核酸序列,其至少约84%相同于编码病毒蛋白的核酸的一部分;
b.第二核酸序列,其至少84%互补于所述第一核酸部分。
2.如权利要求1所述的诱导RNAi的实体,其中所述诱导RNAi的实体长度在约15和约40个核苷酸之间,并包括:
a.第一核酸序列,其至少约89%相同于编码病毒蛋白的核酸的一部分;
b.第二核酸序列,其至少89%互补于所述第一核酸部分。
3.如权利要求1所述的诱导RNAi的实体,其中所述诱导RNAi的实体长度在约15和约40个核苷酸之间,并包括:
a.第一核酸序列,其至少约94%相同于编码病毒蛋白的核酸的一部分;
b.第二核酸序列,其至少94%互补于所述第一核酸部分。
4.如权利要求1所述的诱导RNAi的实体,其中所述诱导RNAi的实体是siRNA或shRNA。
5.如权利要求1所述的诱导RNAi的实体,其中所述核酸包括3’突出端。
6.如权利要求5所述的诱导RNAi的实体,其中所述3’突出端包括脱氧胸苷。
7.如权利要求1所述的诱导RNAi的实体,其中所述病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。
8.如权利要求1所述的诱导RNAi的实体,其中所述病毒蛋白是呼吸道病毒蛋白。
9.如权利要求1所述的诱导RNAi的实体,其中所述病毒蛋白是流感病毒蛋白。
10.如权利要求1所述的诱导RNAi的实体,其中所述诱导RNAi的实体是shRNA,且进一步包括形成发夹环结构的第三核酸序列。
11.如权利要求10所述的诱导RNAi的实体,其中所述发夹环结构包括4至11个核苷酸。
12.一种分离的核酸序列,长约16至约35个核苷酸,沿其长度至少约85%相同于编码病毒蛋白的病毒核酸的一部分或其互补物。
13.如权利要求12所述的核酸,其中所述病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。
14.如权利要求12所述的核酸,其中所述病毒蛋白是呼吸道病毒蛋白。
15.如权利要求12所述的核酸,其中所述病毒蛋白是流感病毒蛋白。
16.一种诱导RNAi的实体,其靶向于流感病毒蛋白的转录子,其中所述诱导RNAi的实体长度在约15和约60个核苷酸之间,并包括:
a.第一核酸序列,其包括选自以下一组的核酸序列:SEQ ID NO1-10709、其互补物、或其长度有至少16个核苷酸或核苷酸序列至少80%同源于所述核酸序列的片段;以及
b.第二核酸序列,其至少80%互补于所述第一核酸序列。
17.如权利要求16所述的诱导RNAi的实体,其中所述第二核酸序列至少约90%互补于所述第一核酸部分。
18.如权利要求16所述的诱导RNAi的实体,其中所述诱导RNAi的实体是siRNA或shRNA。
19.如权利要求16所述的诱导RNAi的实体,其中所述诱导RNAi的实体是shRNA,并且进一步包括形成发夹环结构的第三核酸序列。
20.如权利要求19所述的诱导RNAi的实体,其中所述发夹环结构包括4至11个核苷酸。
21.一种靶向病毒蛋白转录子保守位点的siRNA,其中所述诱导RNAi的实体长度约15至约60个核苷酸。
22.如权利要求21所述的siRNA,其中所述保守位点长度约300核苷酸,并包括所述病毒蛋白基因的3’末端。
23.如权利要求21所述的siRNA,其中所述病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。
24.如权利要求21所述的siRNA,其中所述病毒蛋白是呼吸道病毒蛋白。
25.如权利要求21所述的siRNA,其中所述病毒蛋白是流感病毒蛋白。
26.一种siRNA,其减少编码第一病毒蛋白的第一基因和编码第二病毒蛋白的第二基因的表达。
27.如权利要求26所述的siRNA,其中所述第一病毒基因和所述第二病毒基因来自相同病毒的不同毒株。
28.如权利要求26所述的siRNA,其中所述第一病毒基因和所述第二病毒基因来自两种不同病毒。
29.如权利要求28所述的siRNA,其中一种病毒是流感病毒。
30.一种siRNA,其减少至少约25%的两种或多种编码病毒蛋白的基因的表达。
31.一种靶向转录子的RNAi诱导剂,所述转录子的序列包括编码病毒蛋白的核酸的靶部分。
32.如权利要求31所述的RNAi诱导剂,其中所述RNAi诱导剂是siRNA或shRNA。
33.如权利要求31所述的RNAi诱导剂,其中所述病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。
34.如权利要求31所述的RNAi诱导剂,其中所述病毒蛋白是呼吸道病毒蛋白。
35.如权利要求31所述的RNAi诱导剂,其中所述病毒蛋白是流感病毒蛋白。
36.一种组合物,其包括包括第一siRNA和第二siRNA,所述第一siRNA和第二siRNA各自减少编码病毒蛋白的基因的表达。
37.如权利要求36所述的组合物,其中所述第一siRNA减少编码第一病毒蛋白的第一基因的表达,且所述第二siRNA减少编码第二病毒蛋白的第二基因的表达。
38.如权利要求37所述的组合物,其中所述第一siRNA和第二siRNA减少所述第一基因和第二基因表达的至少约25%。
39.如权利要求37所述的组合物,其中所述第一基因和所述第二基因来自同一病毒种的两种毒株。
40.如权利要求37所述的组合物,其中所述第一基因和所述第二基因来自同一病毒属的两个种。
41.如权利要求37所述的组合物,其中所述第一基因和所述第二基因来自同一病毒科的两种病毒。
42.如权利要求36所述的组合物,其中所述组合物进一步包括第三siRNA,该第三siRNA减少编码第三病毒蛋白的第三基因表达至少约25%。
43.如权利要求42所述的组合物,其中所述组合物还包括阳离子聚合物。
44.一种诊断试剂盒,其包括针对至少部分的病毒蛋白基因检测所述基因的引物或探针,其中所述部分是保守位点。
45.一种减少靶病毒基因在病毒感染的哺乳动物细胞中表达的方法,其包括以下步骤:将所述细胞与减少病毒蛋白基因表达的siRNA接触,以使所述siRNA进入所述哺乳动物细胞的细胞质并减少所述病毒蛋白基因至少约25%的表达。
46.如权利要求45所述的方法,其中所述病毒蛋白获自选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒的病毒。
47.如权利要求45所述的方法,其中所述病毒蛋白基因是呼吸道病毒蛋白基因。
48.如权利要求45所述的方法,其中所述病毒蛋白基因是流感病毒蛋白基因。
49.一种递送siRNA至需要其的患者的方法,该方法包括将包含有效量的所述siRNA的组合物给药于所述患者,其中所述siRNA减少病毒蛋白基因至少约25%的表达。
50.如权利要求49所述的方法,其中所述siRNA以约0.1mg/kg患者体重至约20mg/kg患者体重的浓度递送给所述患者。
51.如权利要求49所述的方法,其中所述siRNA以约0.1mg/kg患者体重至约10mg/kg患者体重的浓度递送给所述患者。
52.如权利要求49所述的方法,其中所述siRNA以约0.1mg/kg患者体重至约50mg/kg患者体重的浓度递送给所述患者。
53.如权利要求49所述的方法,其中所述siRNA减少病毒蛋白基因至少约25%的表达。
54.如权利要求49所述的方法,其中所述siRNA包括选自SEQ ID NO1-10709的核酸序列。
55.如权利要求49所述的方法,其中所述组合物还包括阳离子聚合物。
56.如权利要求49所述的方法,其中所述组合物通过吸入、鼻内、口服或静脉内给药。
57.一种预防或治疗患者病毒感染的方法,其包括将包含靶向病毒蛋白基因的siRNA或shRNA的治疗化合物给药于所述患者。
58.如权利要求57所述的方法,其中所述siRNA或shRNA长度在约15和约60个核苷酸之间,并包括:
a.第一核酸序列,其至少约85%相同于编码病毒蛋白的核酸的一部分;
b.第二核酸序列,其至少85%互补于所述第一核酸部分。
59.如权利要求57所述的方法,其中所述siRNA是双链siRNA分子,其中所述siRNA分子的各链是约15至约50个核苷酸,并且其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。
60.如权利要求57所述的方法,其中所述呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。
61.如权利要求57所述的方法,其中所述核酸序列编码核蛋白基因。
62.如权利要求57所述的方法,其中所述呼吸道病毒是流感病毒,并且其中所述siRNA不是选自SEQ ID NO.10710-10751。
63.如权利要求57所述的方法,其中所述治疗化合物包括阳离子聚合物。
64.siRNA分子在制备抑制哺乳动物患者呼吸系统病毒繁殖的药剂中的用途,其包括向所述患者施用含有靶向病毒蛋白质基因的siRNA或shRNA的治疗化合物。
65.如权利要求64所述的siRNA分子的用途,其中所述siRNA或所述shRNA长度在约15和约60个核苷酸之间,并包括:
a.第一核酸序列,其至少约85%相同于编码病毒蛋白的核酸的一部分;
b.第二核酸序列,其至少85%互补于所述第一核酸部分。
66.如权利要求64所述的siRNA分子的用途,其中所述siRNA是双链siRNA分子,其中所述siRNA分子的各链是约15至约50个核苷酸,并且其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。
67.如权利要求64所述的siRNA分子的用途,其中所述呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。
68.如权利要求64所述的siRNA分子的用途,其中所述核酸序列编码蛋白(NP)基因。
69.如权利要求64所述的siRNA分子的用途,其中所述呼吸道病毒是流感病毒,并且其中所述siRNA不是选自SEQ ID NO.10710-10751。
70.如权利要求64所述的siRNA分子的用途,其中所述呼吸道病毒是流感病毒,并且其中所述siRNA选自SEQ ID NO.1-10709。
71.一种鉴定存在于两种或多种病毒的病毒蛋白转录子中的siRNA或shRNA靶序列的方法,该方法包括以下步骤:
a.提供编码来自病毒的病毒蛋白的核酸序列;
b.鉴定所述核酸序列的靶部分,其中所述部分包括约19个核苷酸且不包括多于3个连续鸟嘌呤核苷酸或多于3个连续胞嘧啶核苷酸;和
c.重复步骤(a)和(b)一次或多次,每次重复使用不同病毒,从而鉴定病毒蛋白转录子中的siRNA或shRNA靶序列。
72.如权利要求71所述的方法,其中所述核酸序列包括蛋白序列的保守位点。
73.如权利要求71所述的方法,该方法进一步包括产生结合于所述靶序列的siRNA或shRNA。
74.一种诊断病毒感染的方法,该方法包括如下步骤:测定患者是否感染了对权利要求1所述的诱导RNAi的实体抑制敏感的病毒。
75.如权利要求71所述的方法,该方法进一步包括将所述诱导RNAi的实体给药于所述患者的步骤。
76.一种治疗或预防流感病毒感染的方法,其包括将权利要求1所述的诱导RNAi的实体给药于需要其的患者。
77.一种抑制呼吸道病毒繁殖的双链siRNA分子,其中所述siRNA分子的各链是约15至约50个核苷酸,并且其中所述siRNA分子的一条链包括与呼吸道病毒核酸序列内保守位点或其变体相同的核酸序列。
78.如权利要求77所述的双链siRNA分子,其中所述呼吸道病毒选自人类呼吸道合胞病毒、人类偏肺病毒、1型人类副流感病毒、2型人类副流感病毒、3型人类副流感病毒、4a型人类副流感病毒、4b型人类副流感病毒、鼻病毒和流感病毒。
79.如权利要求78所述的双链siRNA分子,其中所述核酸序列编码蛋白(NP)基因。
80.如权利要求78所述的双链siRNA分子,其中所述呼吸道病毒是流感病毒,并且其中所述siRNA不是选自SEQ ID NO.10710-10751。
81.如权利要求78所述的双链siRNA分子,其中所述呼吸道病毒是流感病毒,并且其中所述siRNA选自SEQ ID NO.1-10709。
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CN105228648A (zh) * | 2011-10-19 | 2016-01-06 | 哈里斯疫苗有限公司 | 快速产生改良的动物疫苗的方法 |
CN103966212A (zh) * | 2013-02-06 | 2014-08-06 | 霍晋 | A型流感病毒NP基因有干扰作用的siRNA序列的设计及应用 |
CN111201330A (zh) * | 2017-10-09 | 2020-05-26 | 汉诺威医学院 | 用于人类呼吸道合胞病毒(hrsv)的诊断和疗法 |
WO2022199690A1 (zh) * | 2021-03-26 | 2022-09-29 | 圣诺生物医药技术(苏州)有限公司 | 一种siRNA药物、药物组合物、siRNA-小分子药物偶联物及其应用 |
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