CA2792433C - Full cold-pcr enrichment with reference blocking sequence - Google Patents
Full cold-pcr enrichment with reference blocking sequence Download PDFInfo
- Publication number
- CA2792433C CA2792433C CA2792433A CA2792433A CA2792433C CA 2792433 C CA2792433 C CA 2792433C CA 2792433 A CA2792433 A CA 2792433A CA 2792433 A CA2792433 A CA 2792433A CA 2792433 C CA2792433 C CA 2792433C
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- Prior art keywords
- sequence
- target
- pcr
- nucleic acid
- reaction mixture
- Prior art date
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6848—Nucleic acid amplification reactions characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2527/00—Reactions demanding special reaction conditions
- C12Q2527/107—Temperature of melting, i.e. Tm
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US31164210P | 2010-03-08 | 2010-03-08 | |
| US61/311,642 | 2010-03-08 | ||
| PCT/US2011/027473 WO2011112534A1 (en) | 2010-03-08 | 2011-03-08 | Full cold-pcr enrichment with reference blocking sequence |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2792433A1 CA2792433A1 (en) | 2011-09-15 |
| CA2792433C true CA2792433C (en) | 2016-10-11 |
Family
ID=43983637
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2792433A Active CA2792433C (en) | 2010-03-08 | 2011-03-08 | Full cold-pcr enrichment with reference blocking sequence |
Country Status (10)
| Country | Link |
|---|---|
| US (3) | US8623603B2 (https=) |
| EP (1) | EP2545189B1 (https=) |
| JP (1) | JP5795341B2 (https=) |
| KR (2) | KR20150067398A (https=) |
| CN (1) | CN102859003B (https=) |
| AU (1) | AU2011224534B2 (https=) |
| CA (1) | CA2792433C (https=) |
| DK (1) | DK2545189T3 (https=) |
| ES (1) | ES2665500T3 (https=) |
| WO (1) | WO2011112534A1 (https=) |
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| AU2011224534B2 (en) | 2010-03-08 | 2014-10-09 | Dana-Farber Cancer Institute, Inc. | Full COLD-PCR enrichment with reference blocking sequence |
| EP2633071B1 (en) | 2010-10-27 | 2016-10-12 | President and Fellows of Harvard College | Compositions of toehold primer duplexes and methods of use |
| JP2014507950A (ja) | 2011-02-28 | 2014-04-03 | トランスゲノミック,インク. | 混合個体群における標的dnaを配列決定するためのキットおよび方法 |
| EP2691541B1 (en) * | 2011-03-31 | 2017-10-18 | Dana-Farber Cancer Institute, Inc. | Method for enriching in single-stranded mutant sequences from mixture of wild-type and mutant sequences |
| US9796748B2 (en) | 2011-05-02 | 2017-10-24 | President And Fellows Of Harvard College | Spatial sequestration of dynamic nucleic acid circuits |
| US9617392B2 (en) | 2011-07-10 | 2017-04-11 | President And Fellows Of Harvard College | Compositions and methods for self-assembly of polymers with complementary macroscopic and microscopic scale units |
| CN103131756B (zh) * | 2011-11-24 | 2014-08-27 | 百奥迈科生物技术有限公司 | 一种小核酸的检测方法及其应用 |
| JP5846496B2 (ja) * | 2012-04-19 | 2016-01-20 | 国立大学法人 鹿児島大学 | LNAクランプ技術による植物内生菌のSSUrRNA遺伝子の選択的PCR増幅法 |
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| US9279146B2 (en) | 2012-12-21 | 2016-03-08 | Roche Molecular Systems, Inc. | Compounds and methods for the enrichment of mutated nucleic acid from a mixture |
| US10301688B2 (en) * | 2013-01-23 | 2019-05-28 | Brandeis University | Reagents for improving PCR accuracy |
| US10913977B2 (en) * | 2013-07-24 | 2021-02-09 | Dana-Farber Cancer Institute, Inc. | Methods and compositions to enable enrichment of minor DNA alleles by limiting denaturation time in PCR or simply enable enrichment of minor DNA alleles by limiting the denaturation time in PCR |
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| US9873908B2 (en) | 2013-11-27 | 2018-01-23 | Roche Molecular Systems, Inc. | Methods for the enrichment of mutated nucleic acid from a mixture |
| CN103602748A (zh) * | 2013-11-28 | 2014-02-26 | 瑞希基因科技(北京)股份有限公司 | 一种结合荧光定量pcr技术的焦磷酸测序方法 |
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| EP3277304B1 (en) * | 2015-04-02 | 2021-08-04 | Janssen Biotech, Inc. | Protoxin-ii variants and methods of use |
| CN107849606A (zh) * | 2015-04-20 | 2018-03-27 | 尼欧基因组学实验室股份有限公司 | 提高下一代测序灵敏度的方法 |
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| CN105063208B (zh) * | 2015-08-10 | 2018-03-06 | 北京吉因加科技有限公司 | 一种血浆中游离的目标dna低频突变富集测序方法 |
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| CN110770353B (zh) | 2017-04-23 | 2024-11-26 | 伊鲁米那股份有限公司 | 用于改进编索引的核酸文库中的样品鉴定的组合物和方法 |
| US12584169B2 (en) | 2017-04-23 | 2026-03-24 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
| EP3913053A1 (en) | 2017-04-23 | 2021-11-24 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
| US11174511B2 (en) | 2017-07-24 | 2021-11-16 | Dana-Farber Cancer Institute, Inc. | Methods and compositions for selecting and amplifying DNA targets in a single reaction mixture |
| CN107858401A (zh) * | 2017-10-31 | 2018-03-30 | 重庆邮电大学 | 一种低丰度基因突变的富集方法 |
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| SG11202107959WA (en) | 2019-02-02 | 2021-08-30 | Beijing Bytedance Network Technology Co Ltd | Buffer management for intra block copy in video coding |
| CN113545068B (zh) * | 2019-03-01 | 2023-09-15 | 北京字节跳动网络技术有限公司 | 用于视频编解码中的帧内块复制的基于顺序的更新 |
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| KR102635519B1 (ko) | 2019-07-10 | 2024-02-07 | 베이징 바이트댄스 네트워크 테크놀로지 컴퍼니, 리미티드 | 비디오 코딩에서 인트라 블록 카피를 위한 샘플 식별 |
| KR102695788B1 (ko) | 2019-07-11 | 2024-08-14 | 베이징 바이트댄스 네트워크 테크놀로지 컴퍼니, 리미티드 | 비디오 코딩에서 인트라 블록 복사를 위한 비트스트림 적합 제약 |
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| CA2908361C (en) | 2013-04-17 | 2023-09-26 | Pioneer Hi-Bred International, Inc. | Methods for characterizing dna sequence composition in a genome |
| US10913977B2 (en) | 2013-07-24 | 2021-02-09 | Dana-Farber Cancer Institute, Inc. | Methods and compositions to enable enrichment of minor DNA alleles by limiting denaturation time in PCR or simply enable enrichment of minor DNA alleles by limiting the denaturation time in PCR |
| US9873908B2 (en) | 2013-11-27 | 2018-01-23 | Roche Molecular Systems, Inc. | Methods for the enrichment of mutated nucleic acid from a mixture |
| WO2018111835A1 (en) | 2016-12-12 | 2018-06-21 | Dana-Farber Cancer Institute, Inc. | Compositions and methods for molecular barcoding of dna molecules prior to mutation enrichment and/or mutation detection |
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2011
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- 2011-03-08 US US13/042,549 patent/US8623603B2/en not_active Expired - Fee Related
- 2011-03-08 WO PCT/US2011/027473 patent/WO2011112534A1/en not_active Ceased
- 2011-03-08 KR KR1020157014456A patent/KR20150067398A/ko not_active Withdrawn
- 2011-03-08 DK DK11709836.8T patent/DK2545189T3/en active
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| AU2011224534A1 (en) | 2012-09-27 |
| US11174510B2 (en) | 2021-11-16 |
| US20110217714A1 (en) | 2011-09-08 |
| CA2792433A1 (en) | 2011-09-15 |
| EP2545189B1 (en) | 2018-01-10 |
| WO2011112534A1 (en) | 2011-09-15 |
| US20140106362A1 (en) | 2014-04-17 |
| EP2545189A1 (en) | 2013-01-16 |
| DK2545189T3 (en) | 2018-04-23 |
| US20180282798A1 (en) | 2018-10-04 |
| US9957556B2 (en) | 2018-05-01 |
| CN102859003A (zh) | 2013-01-02 |
| AU2011224534B2 (en) | 2014-10-09 |
| KR20120139780A (ko) | 2012-12-27 |
| KR20150067398A (ko) | 2015-06-17 |
| US8623603B2 (en) | 2014-01-07 |
| KR101550489B1 (ko) | 2015-09-07 |
| ES2665500T3 (es) | 2018-04-26 |
| JP2013521776A (ja) | 2013-06-13 |
| CN102859003B (zh) | 2014-07-30 |
| JP5795341B2 (ja) | 2015-10-14 |
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