CA2524194C - Method and kit for identifying antibiotic-resistant microorganisms - Google Patents

Method and kit for identifying antibiotic-resistant microorganisms Download PDF

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Publication number
CA2524194C
CA2524194C CA2524194A CA2524194A CA2524194C CA 2524194 C CA2524194 C CA 2524194C CA 2524194 A CA2524194 A CA 2524194A CA 2524194 A CA2524194 A CA 2524194A CA 2524194 C CA2524194 C CA 2524194C
Authority
CA
Canada
Prior art keywords
probe
probes
nucleic acids
seq
bacteria
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
CA2524194A
Other languages
English (en)
French (fr)
Other versions
CA2524194A1 (en
Inventor
James J. Hogan
Shannon K. Kaplan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Gen Probe Inc
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Priority to CA 2875478 priority Critical patent/CA2875478A1/en
Publication of CA2524194A1 publication Critical patent/CA2524194A1/en
Application granted granted Critical
Publication of CA2524194C publication Critical patent/CA2524194C/en
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
CA2524194A 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms Expired - Lifetime CA2524194C (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CA 2875478 CA2875478A1 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US46999703P 2003-05-13 2003-05-13
US60/469,997 2003-05-13
US51610003P 2003-10-31 2003-10-31
US60/516,100 2003-10-31
PCT/US2004/014690 WO2005017202A2 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA 2875478 Division CA2875478A1 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Publications (2)

Publication Number Publication Date
CA2524194A1 CA2524194A1 (en) 2005-02-24
CA2524194C true CA2524194C (en) 2015-07-21

Family

ID=34197767

Family Applications (2)

Application Number Title Priority Date Filing Date
CA2524194A Expired - Lifetime CA2524194C (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms
CA 2875478 Abandoned CA2875478A1 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Family Applications After (1)

Application Number Title Priority Date Filing Date
CA 2875478 Abandoned CA2875478A1 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Country Status (7)

Country Link
US (2) US7786289B2 (enExample)
EP (1) EP1627082B1 (enExample)
JP (2) JP4662578B2 (enExample)
AU (1) AU2004265570B2 (enExample)
CA (2) CA2524194C (enExample)
DE (1) DE602004022042D1 (enExample)
WO (1) WO2005017202A2 (enExample)

Families Citing this family (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1674583A1 (en) * 2004-12-23 2006-06-28 Eppendorf Array Technologies SA Method and kit for the detection of a large number of genes related to antibiotic resistance in microorganisms
US20060252069A1 (en) * 2005-04-21 2006-11-09 Zhang Kunyan Pcr for mrsa sccmec typing
US20070059714A1 (en) * 2005-09-12 2007-03-15 Birgit Strommenger Detection of presence and antibiotic susceptibility of enterococci
KR100760525B1 (ko) * 2006-04-13 2007-10-04 김재만 병원성 미생물의 무증폭 다중 정량 검출킷트 및 검출방법
AU2007249286B2 (en) * 2006-05-12 2013-06-13 Gen-Probe Incorporated Compositions and methods to detect enterococci nucleic acid
WO2009018000A1 (en) 2007-07-31 2009-02-05 Quest Diagnostics Investments Incorporated Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples
CA2696433A1 (en) * 2007-08-13 2009-03-12 3M Innovative Properties Company Methods for detecting drug-resistant microbes
EP2432897B1 (en) * 2009-05-20 2013-04-17 AdvanDx, Inc. Methods for whole-cell analysis of gram-positive bacteria
JP2011223940A (ja) * 2010-04-21 2011-11-10 Asahi Breweries Ltd 偽陰性を排除するｐｃｒ検査方法およびそれに使用するプライマー
GB201120118D0 (en) 2011-11-22 2012-01-04 Iti Scotland Ltd Detecting analytes
DK2844762T3 (en) 2012-05-04 2018-03-26 Univ California TESTING FOR ANTIBIOTIC SENSITIVITY USING PROBRIOSOMAL RNA PROBLEMS
JP6976167B2 (ja) * 2014-06-13 2021-12-08 キュー−リネア エービー 微生物の検出及び特徴付け方法
CN107148479A (zh) * 2014-09-04 2017-09-08 赛拉诺斯股份有限公司 病原体和抗微生物剂抗性检测
GB201507026D0 (en) 2015-04-24 2015-06-10 Linea Ab Q Medical sample transportation container
WO2017086394A1 (ja) * 2015-11-18 2017-05-26 国立研究開発法人海洋研究開発機構 標的核酸の定量方法及びそのためのキット
GB2554767A (en) 2016-04-21 2018-04-11 Q Linea Ab Detecting and characterising a microorganism
CA3103268A1 (en) 2018-06-28 2020-01-02 Gen-Probe Incorporated Sample preparation method and system
KR102714821B1 (ko) * 2023-07-27 2024-10-14 드림디엑스 주식회사 항생제 내성 세균 검출용 조성물 및 이를 이용한 검출방법

Family Cites Families (24)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5541308A (en) 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
US5283174A (en) * 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
EP0426837B1 (en) * 1989-05-23 1995-09-06 Amoco Corporation Nucleic acid probes for the detection of staphylococcus aureus
US6582908B2 (en) * 1990-12-06 2003-06-24 Affymetrix, Inc. Oligonucleotides
JPH0549477A (ja) 1991-08-05 1993-03-02 Wakunaga Pharmaceut Co Ltd スタフイロコツカス属細菌類の検出
US5437976A (en) * 1991-08-08 1995-08-01 Arizona Board Of Regents, The University Of Arizona Multi-domain DNA ligands bound to a solid matrix for protein and nucleic acid affinity chromatography and processing of solid-phase DNA
FR2699537B1 (fr) * 1992-12-18 1995-02-17 Pasteur Institut Protéine conférant une résistance de type inductible, à des glycopeptides, notamment chez des bactéries à gram-positif. Séquences de nucléotides codant pour cette protéine.
US5712095A (en) * 1994-06-16 1998-01-27 Becton Dickinson And Company Rapid and sensitive detection of antibiotic-resistant mycobacteria using oligonucleotide probes specific for ribosomal RNA precursors
US5702895A (en) 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
FR2736652B1 (fr) 1995-07-13 1997-08-14 Univ Bourgogne Levures et bacteries transformees pour operer la fermentation malolactique dans les vins
AU730154B2 (en) 1995-10-27 2001-03-01 Elliot R. Ramberg Methods and compositions for detection of specific nucleotide sequences
EP0990142A4 (en) * 1996-12-31 2000-09-27 Genometrix Genomics Inc MULTIPLEXED MOLECULAR ANALYSIS METHOD AND DEVICE
US6503709B1 (en) * 1997-07-03 2003-01-07 Id Biomedical Corporation Methods for rapidly detecting methicillin resistant staphylococci
JP2001518283A (ja) 1997-09-26 2001-10-16 ユニヴェルシテ カトリク ド ルヴァン ブドウ球菌株の同定のための遺伝子配列、診断及び／又は定量法及び装置
US6821770B1 (en) 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
DE60028758T2 (de) * 1999-05-03 2007-05-24 Gen-Probe Inc., San Diego Polynukleotidsonden zur detektion und quantifizierung von actinomycetes
WO2001012803A2 (en) 1999-08-17 2001-02-22 Beth Israel Deaconess Medical Center, Inc. Methods and compositions for restoring antibiotic susceptibility in glycopeptide-resistant enterococcus
CA2388461C (en) 1999-09-28 2013-06-11 Infectio Diagnostic (I.D.I.) Inc. Highly conserved genes and their use to generate probes and primers for the detection of microorganisms
US7205104B2 (en) * 2000-03-24 2007-04-17 Eppendorf Array Technologies Sa (Eat) Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays
EP1136566A1 (en) 2000-03-24 2001-09-26 Facultés Universitaires Notre-Dame de la Paix Method and kit for detection and/or quantification of homologus nucleotide sequences on arrays
DE60217837T2 (de) 2001-03-15 2007-10-25 Jacques Schrenzel Nachweis von methicillin-resistenten staphylococcus aureus bakterien (mrsa)
US6406892B1 (en) 2001-05-23 2002-06-18 Bio-Rad Laboratories, Inc. Acetate-free purification of plasmid DNA on hydroxyapatite
AU2002367748A1 (en) * 2001-08-08 2003-10-27 North Carolina State University Infectious disease microarray
US6617137B2 (en) * 2001-10-15 2003-09-09 Molecular Staging Inc. Method of amplifying whole genomes without subjecting the genome to denaturing conditions

Also Published As

Publication number Publication date
US7786289B2 (en) 2010-08-31
US20100216155A1 (en) 2010-08-26
CA2875478A1 (en) 2005-02-24
AU2004265570B2 (en) 2009-01-08
US20040229268A1 (en) 2004-11-18
JP2011062210A (ja) 2011-03-31
WO2005017202A3 (en) 2005-07-21
JP2006525809A (ja) 2006-11-16
EP1627082B1 (en) 2009-07-15
AU2004265570A1 (en) 2005-02-24
EP1627082A2 (en) 2006-02-22
JP5276648B2 (ja) 2013-08-28
JP4662578B2 (ja) 2011-03-30
WO2005017202A2 (en) 2005-02-24
DE602004022042D1 (de) 2009-08-27
US9109261B2 (en) 2015-08-18
CA2524194A1 (en) 2005-02-24

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