JP4662578B2 - 抗生物質耐性微生物を同定するための方法およびキット - Google Patents

抗生物質耐性微生物を同定するための方法およびキット Download PDF

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JP4662578B2
JP4662578B2 JP2006514343A JP2006514343A JP4662578B2 JP 4662578 B2 JP4662578 B2 JP 4662578B2 JP 2006514343 A JP2006514343 A JP 2006514343A JP 2006514343 A JP2006514343 A JP 2006514343A JP 4662578 B2 JP4662578 B2 JP 4662578B2
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probe
probes
seq
hybridization
sequence
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JP2006525809A (ja
JP2006525809A5 (enExample
Inventor
ジェイムス ジェイ. ホーガン,
シャノン ケー. カプラン,
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ジェン−プロウブ インコーポレイテッド
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
JP2006514343A 2003-05-13 2004-05-11 抗生物質耐性微生物を同定するための方法およびキット Expired - Lifetime JP4662578B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US46999703P 2003-05-13 2003-05-13
US51610003P 2003-10-31 2003-10-31
PCT/US2004/014690 WO2005017202A2 (en) 2003-05-13 2004-05-11 Method and kit for identifying antibiotic-resistant microorganisms

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2010265827A Division JP5276648B2 (ja) 2003-05-13 2010-11-29 抗生物質耐性微生物を同定するための方法およびキット

Publications (3)

Publication Number Publication Date
JP2006525809A JP2006525809A (ja) 2006-11-16
JP2006525809A5 JP2006525809A5 (enExample) 2009-04-16
JP4662578B2 true JP4662578B2 (ja) 2011-03-30

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JP2006514343A Expired - Lifetime JP4662578B2 (ja) 2003-05-13 2004-05-11 抗生物質耐性微生物を同定するための方法およびキット
JP2010265827A Expired - Fee Related JP5276648B2 (ja) 2003-05-13 2010-11-29 抗生物質耐性微生物を同定するための方法およびキット

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US (2) US7786289B2 (enExample)
EP (1) EP1627082B1 (enExample)
JP (2) JP4662578B2 (enExample)
AU (1) AU2004265570B2 (enExample)
CA (2) CA2875478A1 (enExample)
DE (1) DE602004022042D1 (enExample)
WO (1) WO2005017202A2 (enExample)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1674583A1 (en) * 2004-12-23 2006-06-28 Eppendorf Array Technologies SA Method and kit for the detection of a large number of genes related to antibiotic resistance in microorganisms
CA2606253A1 (en) * 2005-04-21 2006-10-26 Uti Limited Partnership Pcr for mrsa sccmec typing
US20070059714A1 (en) * 2005-09-12 2007-03-15 Birgit Strommenger Detection of presence and antibiotic susceptibility of enterococci
KR100760525B1 (ko) * 2006-04-13 2007-10-04 김재만 병원성 미생물의 무증폭 다중 정량 검출킷트 및 검출방법
ATE514794T1 (de) * 2006-05-12 2011-07-15 Gen Probe Inc Zusammensetzungen und verfahren für den nachweis von enterokokken-nukleinsäuren
WO2009018000A1 (en) 2007-07-31 2009-02-05 Quest Diagnostics Investments Incorporated Detection of methicillin-resistant and methicillin-sensitive staphylococcus aureus in biological samples
CN102007222A (zh) * 2007-08-13 2011-04-06 3M创新有限公司 用于检测耐药微生物的方法
WO2010135480A1 (en) * 2009-05-20 2010-11-25 Advandx, Inc. Methods for whole-cell analysis of gram-positive bacteria
JP2011223940A (ja) * 2010-04-21 2011-11-10 Asahi Breweries Ltd 偽陰性を排除するpcr検査方法およびそれに使用するプライマー
GB201120118D0 (en) 2011-11-22 2012-01-04 Iti Scotland Ltd Detecting analytes
DK2844762T3 (en) * 2012-05-04 2018-03-26 Univ California TESTING FOR ANTIBIOTIC SENSITIVITY USING PROBRIOSOMAL RNA PROBLEMS
WO2015189390A1 (en) 2014-06-13 2015-12-17 Q-Linea Ab Method for detecting and characterising a microorganism
EP3189154B1 (en) 2014-09-04 2023-03-22 Labrador Diagnostics LLC Pathogen and antimicrobial resistance testing
GB201507026D0 (en) 2015-04-24 2015-06-10 Linea Ab Q Medical sample transportation container
JP6284137B2 (ja) * 2015-11-18 2018-02-28 国立研究開発法人海洋研究開発機構 標的核酸の定量方法及びそのためのキット
GB2554767A (en) 2016-04-21 2018-04-11 Q Linea Ab Detecting and characterising a microorganism
WO2020005584A1 (en) * 2018-06-28 2020-01-02 Gen-Probe Incorporated Sample preparation method and system
EP4653527A3 (en) * 2021-03-15 2026-02-18 Gen-Probe Incorporated Use of a composition and method for biological sample processing
KR102714821B1 (ko) * 2023-07-27 2024-10-14 드림디엑스 주식회사 항생제 내성 세균 검출용 조성물 및 이를 이용한 검출방법

Family Cites Families (24)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
US5283174A (en) * 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
JP3105241B2 (ja) * 1989-05-23 2000-10-30 ジーン―トラック・システムス 黄色ブドウ球菌の検出用核酸プローブ
US6582908B2 (en) * 1990-12-06 2003-06-24 Affymetrix, Inc. Oligonucleotides
JPH0549477A (ja) 1991-08-05 1993-03-02 Wakunaga Pharmaceut Co Ltd スタフイロコツカス属細菌類の検出
US5437976A (en) * 1991-08-08 1995-08-01 Arizona Board Of Regents, The University Of Arizona Multi-domain DNA ligands bound to a solid matrix for protein and nucleic acid affinity chromatography and processing of solid-phase DNA
FR2699537B1 (fr) * 1992-12-18 1995-02-17 Pasteur Institut Protéine conférant une résistance de type inductible, à des glycopeptides, notamment chez des bactéries à gram-positif. Séquences de nucléotides codant pour cette protéine.
US5712095A (en) * 1994-06-16 1998-01-27 Becton Dickinson And Company Rapid and sensitive detection of antibiotic-resistant mycobacteria using oligonucleotide probes specific for ribosomal RNA precursors
US5702895A (en) * 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
FR2736652B1 (fr) 1995-07-13 1997-08-14 Univ Bourgogne Levures et bacteries transformees pour operer la fermentation malolactique dans les vins
AU730154B2 (en) * 1995-10-27 2001-03-01 Elliot R. Ramberg Methods and compositions for detection of specific nucleotide sequences
WO1998029736A1 (en) * 1996-12-31 1998-07-09 Genometrix Incorporated Multiplexed molecular analysis apparatus and method
US6503709B1 (en) * 1997-07-03 2003-01-07 Id Biomedical Corporation Methods for rapidly detecting methicillin resistant staphylococci
WO1999016780A2 (en) 1997-09-26 1999-04-08 Universite Catholique De Louvain Genetic sequences, diagnostic and/or quantification methods for the identification of staphylococci strains
US6821770B1 (en) * 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
DE60028758T2 (de) * 1999-05-03 2007-05-24 Gen-Probe Inc., San Diego Polynukleotidsonden zur detektion und quantifizierung von actinomycetes
WO2001012803A2 (en) 1999-08-17 2001-02-22 Beth Israel Deaconess Medical Center, Inc. Methods and compositions for restoring antibiotic susceptibility in glycopeptide-resistant enterococcus
CA2937907C (en) 1999-09-28 2017-08-22 Geneohm Sciences Canada Inc. Nucleic acids, methods and kits for the detection of campylobacter
EP1136566A1 (en) 2000-03-24 2001-09-26 Facultés Universitaires Notre-Dame de la Paix Method and kit for detection and/or quantification of homologus nucleotide sequences on arrays
US7205104B2 (en) * 2000-03-24 2007-04-17 Eppendorf Array Technologies Sa (Eat) Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays
DE60217837T2 (de) 2001-03-15 2007-10-25 Jacques Schrenzel Nachweis von methicillin-resistenten staphylococcus aureus bakterien (mrsa)
US6406892B1 (en) * 2001-05-23 2002-06-18 Bio-Rad Laboratories, Inc. Acetate-free purification of plasmid DNA on hydroxyapatite
US20030143571A1 (en) * 2001-08-08 2003-07-31 North Carolina State University Infectious disease microarray
US6617137B2 (en) * 2001-10-15 2003-09-09 Molecular Staging Inc. Method of amplifying whole genomes without subjecting the genome to denaturing conditions

Also Published As

Publication number Publication date
JP5276648B2 (ja) 2013-08-28
CA2875478A1 (en) 2005-02-24
EP1627082A2 (en) 2006-02-22
US20100216155A1 (en) 2010-08-26
WO2005017202A3 (en) 2005-07-21
US7786289B2 (en) 2010-08-31
JP2011062210A (ja) 2011-03-31
CA2524194A1 (en) 2005-02-24
JP2006525809A (ja) 2006-11-16
AU2004265570A1 (en) 2005-02-24
US20040229268A1 (en) 2004-11-18
EP1627082B1 (en) 2009-07-15
CA2524194C (en) 2015-07-21
DE602004022042D1 (de) 2009-08-27
US9109261B2 (en) 2015-08-18
AU2004265570B2 (en) 2009-01-08
WO2005017202A2 (en) 2005-02-24

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