BR112017024573A2 - método de determinação da sequência de um ácido nucleico nuclear usando luminescência resolvida no tempo - Google Patents
método de determinação da sequência de um ácido nucleico nuclear usando luminescência resolvida no tempoInfo
- Publication number
- BR112017024573A2 BR112017024573A2 BR112017024573A BR112017024573A BR112017024573A2 BR 112017024573 A2 BR112017024573 A2 BR 112017024573A2 BR 112017024573 A BR112017024573 A BR 112017024573A BR 112017024573 A BR112017024573 A BR 112017024573A BR 112017024573 A2 BR112017024573 A2 BR 112017024573A2
- Authority
- BR
- Brazil
- Prior art keywords
- nucleic acid
- determining
- acid sequence
- time
- luminescence
- Prior art date
Links
- 238000004020 luminiscence type Methods 0.000 title abstract 4
- 238000000034 method Methods 0.000 title abstract 2
- 150000007523 nucleic acids Chemical group 0.000 title abstract 2
- 108091028043 Nucleic acid sequence Proteins 0.000 title 1
- 238000012163 sequencing technique Methods 0.000 abstract 2
- 238000003203 nucleic acid sequencing method Methods 0.000 abstract 1
- 102000039446 nucleic acids Human genes 0.000 abstract 1
- 108020004707 nucleic acids Proteins 0.000 abstract 1
- 239000002773 nucleotide Substances 0.000 abstract 1
- 125000003729 nucleotide group Chemical group 0.000 abstract 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6408—Fluorescence; Phosphorescence with measurement of decay time, time resolved fluorescence
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/645—Specially adapted constructive features of fluorimeters
- G01N21/6452—Individual samples arranged in a regular 2D-array, e.g. multiwell plates
- G01N21/6454—Individual samples arranged in a regular 2D-array, e.g. multiwell plates using an integrated detector array
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/645—Specially adapted constructive features of fluorimeters
- G01N21/648—Specially adapted constructive features of fluorimeters using evanescent coupling or surface plasmon coupling for the excitation of fluorescence
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
- G01N33/582—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with fluorescent label
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
- G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/645—Specially adapted constructive features of fluorimeters
- G01N2021/6482—Sample cells, cuvettes
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/75—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated
- G01N21/77—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator
- G01N2021/7769—Measurement method of reaction-produced change in sensor
- G01N2021/7786—Fluorescence
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2201/00—Features of devices classified in G01N21/00
- G01N2201/06—Illumination; Optics
- G01N2201/064—Stray light conditioning
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Immunology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Physics & Mathematics (AREA)
- Organic Chemistry (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Hematology (AREA)
- Urology & Nephrology (AREA)
- Biomedical Technology (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Food Science & Technology (AREA)
- Cell Biology (AREA)
- Medicinal Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Optics & Photonics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Immobilizing And Processing Of Enzymes And Microorganisms (AREA)
Abstract
a presente invenção refere-se a métodos de sequenciamento de moléculas com base em tempos de vida e/ou intensidades de luminescência. em alguns aspectos, métodos de sequenciamento de ácidos nucleicos envolvem determinação dos tempos de vida de luminescência e, opcionalmente, intensidades de luminescência, de uma série de nucleotídeos luminescentemente marcados incorporados durante uma reação de sequenciamento de ácido nucleico.
Applications Claiming Priority (11)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201562164482P | 2015-05-20 | 2015-05-20 | |
US201562164464P | 2015-05-20 | 2015-05-20 | |
US201562164485P | 2015-05-20 | 2015-05-20 | |
US201562164506P | 2015-05-20 | 2015-05-20 | |
US62/164,482 | 2015-05-20 | ||
US62/164,506 | 2015-05-20 | ||
US62/164,485 | 2015-05-20 | ||
US62/164,464 | 2015-05-20 | ||
US14/821,688 US9885657B2 (en) | 2014-08-08 | 2015-08-07 | Integrated device with external light source for probing detecting and analyzing molecules |
US14/821,688 | 2015-08-07 | ||
PCT/US2016/033616 WO2016187580A1 (en) | 2015-05-20 | 2016-05-20 | Method of determining the sequence of a nuclear acid using time resolved luminescence |
Publications (2)
Publication Number | Publication Date |
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BR112017024573A2 true BR112017024573A2 (pt) | 2018-07-31 |
BR112017024573B1 BR112017024573B1 (pt) | 2024-03-05 |
Family
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Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
BR112017024573-6A BR112017024573B1 (pt) | 2015-05-20 | 2016-05-20 | Método de identificação de uma molécula única em uma amostra |
Country Status (11)
Country | Link |
---|---|
EP (2) | EP3998471A1 (pt) |
JP (2) | JP6936736B2 (pt) |
KR (1) | KR20180008779A (pt) |
CN (1) | CN108027325A (pt) |
AU (2) | AU2016264753B2 (pt) |
BR (1) | BR112017024573B1 (pt) |
CA (1) | CA2986237A1 (pt) |
HK (1) | HK1252483A1 (pt) |
MX (2) | MX2022001187A (pt) |
TW (1) | TWI704229B (pt) |
WO (1) | WO2016187580A1 (pt) |
Families Citing this family (31)
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BR112017002485B1 (pt) | 2014-08-08 | 2020-12-01 | Quantum-Si Incorporated | circuito integrado e método de fotodetecção |
WO2017074878A1 (en) | 2015-10-25 | 2017-05-04 | Sanofi | Trispecific and/or trivalent binding proteins for prevention or treatment of hiv infection |
CA3012705A1 (en) | 2016-02-17 | 2017-08-24 | Tesseract Health, Inc. | Sensor and device for lifetime imaging and detection applications |
RS64771B1 (sr) | 2016-04-13 | 2023-11-30 | Sanofi Sa | Trispecifični i/ili trovalentni vezujući proteini |
CA3047122A1 (en) * | 2016-12-16 | 2018-06-21 | Quantum-Si Incorporated | Optical coupler and waveguide system |
WO2018119347A1 (en) | 2016-12-22 | 2018-06-28 | Quantum-Si Incorporated | Integrated photodetector with direct binning pixel |
AU2018261007A1 (en) | 2017-05-05 | 2019-11-07 | Quantum-Si Incorporated | Substrates having modified surface reactivity and antifouling properties in biological reactions |
EP3625597B1 (en) * | 2017-05-19 | 2024-03-20 | Københavns Universitet | Coherent single photon source |
EP3845902B1 (en) * | 2017-06-23 | 2022-09-14 | NanoTemper Technologies GmbH | Methods for measuring inter- and/or intra-molecular interactions |
CN111133294B (zh) * | 2017-07-24 | 2024-05-24 | 宽腾矽公司 | 光抑制光子结构 |
KR102626317B1 (ko) * | 2017-07-24 | 2024-01-18 | 퀀텀-에스아이 인코포레이티드 | 고강도 표지된 반응물 조성물 및 서열분석 방법 |
US11162138B2 (en) | 2017-10-30 | 2021-11-02 | Pacific Biosciences Of California, Inc. | Multi-amplitude modular labeled compounds |
AU2019288394A1 (en) | 2018-06-22 | 2021-01-07 | Quantum-Si Incorporated | Integrated photodetector with charge storage bin of varied detection time |
WO2020010589A1 (en) * | 2018-07-12 | 2020-01-16 | Shenzhen Genorivision Technology Co., Ltd. | An apparatus for biopolymer sequencing |
US20200072752A1 (en) * | 2018-08-29 | 2020-03-05 | Quantum-Si Incorporated | System and methods for detecting lifetime using photon counting photodetectors |
CA3109866A1 (en) * | 2018-08-29 | 2020-03-05 | Quantum-Si Incorporated | Sample well fabrication techniques and structures for integrated sensor devices |
CN111333605B (zh) * | 2018-12-18 | 2022-07-15 | 中国科学院大连化学物理研究所 | 一种高亮度、高稳定性的细胞膜碳酸酐酶ⅸ荧光探针 |
KR20210107852A (ko) | 2019-01-03 | 2021-09-01 | 퀀텀-에스아이 인코포레이티드 | 광자 요소들의 어레이에 광을 전달하기 위한 광학 도파관들 및 커플러들 |
WO2020154546A1 (en) | 2019-01-23 | 2020-07-30 | Quantum-Si Incorporated | High intensity labeled reactant compositions and methods for sequencing |
US11613576B2 (en) | 2019-04-09 | 2023-03-28 | Sanofi | Trispecific binding proteins, methods, and uses thereof |
CN110066723A (zh) * | 2019-05-05 | 2019-07-30 | 京东方科技集团股份有限公司 | 基因测序芯片、设备、制造方法 |
AU2020364058A1 (en) | 2019-10-11 | 2022-05-26 | Quantum-Si Incorporated | Surface modification in the vapor phase |
AU2021208557A1 (en) | 2020-01-14 | 2022-09-01 | Quantum-Si Incorporated | Sensor for lifetime plus spectral characterization |
EP4088320A1 (en) | 2020-01-14 | 2022-11-16 | Quantum-si Incorporated | Integrated sensor for lifetime characterization |
TW202147591A (zh) | 2020-03-02 | 2021-12-16 | 美商寬騰矽公司 | 用於多維信號分析之整合感應器 |
KR20220165754A (ko) | 2020-04-08 | 2022-12-15 | 퀀텀-에스아이 인코포레이티드 | 스큐가 감소된 통합 센서 |
GB2599729A (en) * | 2020-10-12 | 2022-04-13 | Sumitomo Chemical Co | Method comprising light emitting marker |
EP4356135A1 (en) * | 2021-06-17 | 2024-04-24 | Roche Diagnostics GmbH | Thermostable affinity polypeptides |
WO2023275738A1 (en) * | 2021-06-28 | 2023-01-05 | Ecole Polytechnique Federale De Lausanne (Epfl) | Method and device for performing spectrally and temporally resolved spectroscopy of single photon emission in a quantum device |
WO2023032996A1 (ja) | 2021-08-31 | 2023-03-09 | 富士フイルム株式会社 | 化合物及びこれを用いた標識生体物質 |
US20230184678A1 (en) * | 2021-12-14 | 2023-06-15 | Quantum-Si Incorporated | Methods for loading and data acquisition |
Family Cites Families (10)
Publication number | Priority date | Publication date | Assignee | Title |
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EP0605655B1 (en) * | 1991-09-16 | 1997-05-07 | Molecular Probes, Inc. | Dimers of unsymmetrical cyanine dyes |
US5597696A (en) * | 1994-07-18 | 1997-01-28 | Becton Dickinson And Company | Covalent cyanine dye oligonucleotide conjugates |
SE506700C2 (sv) * | 1996-05-31 | 1998-02-02 | Mikael Kubista | Sond och förfaranden för analys av nukleinsyra |
US7056661B2 (en) * | 1999-05-19 | 2006-06-06 | Cornell Research Foundation, Inc. | Method for sequencing nucleic acid molecules |
JP3690271B2 (ja) * | 2000-11-29 | 2005-08-31 | 株式会社島津製作所 | 核酸の塩基配列決定のためのマトリックス値を得る方法 |
AU2002324827B2 (en) | 2001-08-29 | 2007-11-29 | Global Life Sciences Solutions Usa Llc | Labeled nucleoside polyphosphates |
JP2007033159A (ja) * | 2005-07-25 | 2007-02-08 | Assay Corp | 蛍光分子で標識された測定対象物質 |
JP2010066212A (ja) * | 2008-09-12 | 2010-03-25 | Univ Of Tokyo | 測定装置及び観察対象の測定方法 |
US9670243B2 (en) * | 2010-06-02 | 2017-06-06 | Industrial Technology Research Institute | Compositions and methods for sequencing nucleic acids |
JP5928906B2 (ja) * | 2013-08-27 | 2016-06-01 | 横河電機株式会社 | 核酸配列計測方法、核酸配列計測用デバイス、核酸配列計測用デバイスの製造方法および核酸配列計測装置 |
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2016
- 2016-05-20 TW TW105115925A patent/TWI704229B/zh active
- 2016-05-20 MX MX2022001187A patent/MX2022001187A/es unknown
- 2016-05-20 CA CA2986237A patent/CA2986237A1/en active Pending
- 2016-05-20 BR BR112017024573-6A patent/BR112017024573B1/pt active IP Right Grant
- 2016-05-20 CN CN201680040436.0A patent/CN108027325A/zh active Pending
- 2016-05-20 EP EP21199590.7A patent/EP3998471A1/en active Pending
- 2016-05-20 EP EP16729108.7A patent/EP3298389B1/en active Active
- 2016-05-20 JP JP2017560260A patent/JP6936736B2/ja active Active
- 2016-05-20 WO PCT/US2016/033616 patent/WO2016187580A1/en active Application Filing
- 2016-05-20 MX MX2017014821A patent/MX2017014821A/es unknown
- 2016-05-20 KR KR1020177036583A patent/KR20180008779A/ko not_active Application Discontinuation
- 2016-05-20 AU AU2016264753A patent/AU2016264753B2/en active Active
-
2018
- 2018-09-13 HK HK18111791.8A patent/HK1252483A1/zh unknown
-
2021
- 2021-08-27 JP JP2021138498A patent/JP7339302B2/ja active Active
- 2021-12-08 AU AU2021282471A patent/AU2021282471B2/en active Active
Also Published As
Publication number | Publication date |
---|---|
EP3998471A1 (en) | 2022-05-18 |
JP2018521308A (ja) | 2018-08-02 |
AU2016264753B2 (en) | 2021-09-09 |
MX2022001187A (es) | 2023-01-04 |
JP2021192044A (ja) | 2021-12-16 |
TWI704229B (zh) | 2020-09-11 |
TW201708546A (zh) | 2017-03-01 |
AU2021282471B2 (en) | 2024-01-04 |
WO2016187580A1 (en) | 2016-11-24 |
EP3298389B1 (en) | 2021-09-29 |
CN108027325A (zh) | 2018-05-11 |
AU2016264753A1 (en) | 2017-12-14 |
AU2021282471A1 (en) | 2022-01-06 |
BR112017024573B1 (pt) | 2024-03-05 |
EP3298389A1 (en) | 2018-03-28 |
KR20180008779A (ko) | 2018-01-24 |
HK1252483A1 (zh) | 2019-05-24 |
CA2986237A1 (en) | 2016-11-24 |
JP7339302B2 (ja) | 2023-09-05 |
MX2017014821A (es) | 2018-06-27 |
JP6936736B2 (ja) | 2021-09-22 |
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