BR112013000552B8 - Estratégias de sequenciamento de região de interesse genômica em 3d - Google Patents

Estratégias de sequenciamento de região de interesse genômica em 3d

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Publication number
BR112013000552B8
BR112013000552B8 BR112013000552A BR112013000552A BR112013000552B8 BR 112013000552 B8 BR112013000552 B8 BR 112013000552B8 BR 112013000552 A BR112013000552 A BR 112013000552A BR 112013000552 A BR112013000552 A BR 112013000552A BR 112013000552 B8 BR112013000552 B8 BR 112013000552B8
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genomic region
interest
sequencing strategies
cross
interest sequencing
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BR112013000552A
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BR112013000552B1 (pt
BR112013000552A2 (pt
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Jan Van Min Max
Leonard De Laat Wouter
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Cergentis B V
Koninklijke Acad Van Wetenschappen
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Publication of BR112013000552B1 publication Critical patent/BR112013000552B1/pt
Publication of BR112013000552B8 publication Critical patent/BR112013000552B8/pt

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    • C12Q2521/00—Reaction characterised by the enzymatic activity
    • C12Q2521/30—Phosphoric diester hydrolysing, i.e. nuclease
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    • C12Q2523/00—Reactions characterised by treatment of reaction samples
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    • C12Q2600/00—Oligonucleotides characterized by their use
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  • Chemical & Material Sciences (AREA)
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  • General Chemical & Material Sciences (AREA)

Abstract

ESTRATÉGIAS DE SEQUENCIAMENTO DE REGIÃO DE INTERESSE GENÔMICA EM 3D. A invenção refere-se a métodos para determinar a sequência de uma região genômica de interesse que compreende uma sequência de nucleotídeo alvo que compreende fragmentar um DNA reticulado, ligar o DNA reticulado fragmentado, reverter a reticulação e determinar pelo menos parte das sequências de fragmentos de DNA ligados que compreendem uma sequência de nucleotídeo alvo.
BR112013000552A 2010-07-09 2011-07-08 Estratégias de sequenciamento de região de interesse genômica em 3d BR112013000552B8 (pt)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US36277810P 2010-07-09 2010-07-09
US61/362,778 2010-07-09
PCT/NL2011/050504 WO2012005595A2 (en) 2010-07-09 2011-07-08 V3-d genomic region of interest sequencing strategies

Publications (3)

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BR112013000552A2 BR112013000552A2 (pt) 2016-05-24
BR112013000552B1 BR112013000552B1 (pt) 2021-03-02
BR112013000552B8 true BR112013000552B8 (pt) 2023-01-17

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US (2) US12006538B2 (pt)
EP (3) EP2591125B1 (pt)
JP (1) JP5977234B2 (pt)
KR (1) KR101862756B1 (pt)
CN (1) CN103180459B (pt)
AU (1) AU2011274642B2 (pt)
BR (1) BR112013000552B8 (pt)
CA (1) CA2804450C (pt)
CY (1) CY1121702T1 (pt)
DK (2) DK3360975T3 (pt)
ES (2) ES2667346T3 (pt)
HR (1) HRP20180593T1 (pt)
HU (1) HUE037359T2 (pt)
IL (2) IL224127B (pt)
LT (1) LT2591125T (pt)
NO (1) NO2591125T3 (pt)
NZ (1) NZ606228A (pt)
PL (2) PL3360975T3 (pt)
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RS (1) RS57295B1 (pt)
RU (1) RU2603082C2 (pt)
SG (1) SG186954A1 (pt)
SI (1) SI2591125T1 (pt)
SM (1) SMT201800213T1 (pt)
WO (1) WO2012005595A2 (pt)
ZA (1) ZA201300375B (pt)

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