AU782305B2 - Nucleic acid probes and methods for detecting clinically important fungal pathogens - Google Patents

Nucleic acid probes and methods for detecting clinically important fungal pathogens Download PDF

Info

Publication number
AU782305B2
AU782305B2 AU55255/00A AU5525500A AU782305B2 AU 782305 B2 AU782305 B2 AU 782305B2 AU 55255/00 A AU55255/00 A AU 55255/00A AU 5525500 A AU5525500 A AU 5525500A AU 782305 B2 AU782305 B2 AU 782305B2
Authority
AU
Australia
Prior art keywords
seq
candida
species
iii
probes
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
AU55255/00A
Other languages
English (en)
Other versions
AU5525500A (en
Inventor
Geert Jannes
Majella Maher
Cara Martin
Rudi Rossau
Terry Smith
Marjo Van Der Weide
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fujirebio Europe NV SA
National University of Ireland Galway NUI
Enterprise Ireland
Original Assignee
ENTPR IE TRD AS BIORESEARCH IE
Innogenetics NV SA
Enterprise Ireland
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by ENTPR IE TRD AS BIORESEARCH IE, Innogenetics NV SA, Enterprise Ireland filed Critical ENTPR IE TRD AS BIORESEARCH IE
Publication of AU5525500A publication Critical patent/AU5525500A/en
Application granted granted Critical
Publication of AU782305B2 publication Critical patent/AU782305B2/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Immunology (AREA)
  • Mycology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Botany (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AU55255/00A 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens Ceased AU782305B2 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
EP99870109 1999-05-28
EP99870109 1999-05-28
US13862199P 1999-06-11 1999-06-11
US60/138621 1999-06-11
PCT/EP2000/004714 WO2000073499A2 (en) 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens

Publications (2)

Publication Number Publication Date
AU5525500A AU5525500A (en) 2000-12-18
AU782305B2 true AU782305B2 (en) 2005-07-21

Family

ID=46506639

Family Applications (1)

Application Number Title Priority Date Filing Date
AU55255/00A Ceased AU782305B2 (en) 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens

Country Status (7)

Country Link
US (2) US6858387B1 (enExample)
EP (1) EP1185702B1 (enExample)
JP (2) JP4963765B2 (enExample)
AU (1) AU782305B2 (enExample)
CA (1) CA2374878C (enExample)
ES (1) ES2621547T3 (enExample)
WO (1) WO2000073499A2 (enExample)

Families Citing this family (45)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP4963765B2 (ja) * 1999-05-28 2012-06-27 イノジェネティックス・ナムローゼ・フェンノートシャップ 臨床的に重要な真菌病原体を検出するための核酸プローブおよび方法
WO2001083821A2 (en) * 2000-05-01 2001-11-08 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of candida species
WO2002079512A2 (en) * 2001-03-29 2002-10-10 University Of Nevada - Las Vegas Method for detection and quantification of the fungus aspergillus fumigatus using quantitative pcr
WO2003080866A1 (en) * 2002-03-26 2003-10-02 Council Of Scientific And Industrial Research Novel primers for identifying aflatoxinogenic aspergilli and an improved use thereof
JP4377810B2 (ja) 2002-05-17 2009-12-02 アメリカ合衆国 アスペルギルス種の分子的同定方法
JP2004290171A (ja) * 2003-02-07 2004-10-21 Akira Hiraishi 微生物の分子生物学的同定技術
EP1690938A1 (de) * 2005-02-11 2006-08-16 Qiagen GmbH Verfahren zur Isolierung von Nukleinsäuren, wobei die Nukleinsäuren bei erhöhter Temperatur an einer Matrix immobilisiert werden
US20100311041A1 (en) 2005-06-14 2010-12-09 Statens Serum Institut Pcr diagnostics of dermatophytes and other pathogenic fungi
US20070050311A1 (en) * 2005-08-30 2007-03-01 Caterpillar Inc. Assembly should cost application
EP1945810B1 (en) * 2005-09-20 2015-07-01 AdvanDx, Inc. Reagents, methods and kits for classification of fungi and direction of anti-fungal therapy
JP2007159411A (ja) 2005-12-09 2007-06-28 Canon Inc プローブセット、プローブ固定担体及び遺伝子検査方法
WO2007101664A2 (de) * 2006-03-08 2007-09-13 Fungus Bioscience Gmbh Verbesserter aspergillosetest in klinischen proben
RU2348695C2 (ru) 2006-05-23 2009-03-10 Закрытое акционерное общество "Молекулярно-медицинские технологии" Дифференцирующий и специфический олигонуклеотиды для идентификации последовательностей днк инфекционных агентов в биологических материалах, способ видовой идентификации инфекционных агентов, биочип и набор для осуществления этого способа
JP5015518B2 (ja) * 2006-08-04 2012-08-29 東洋鋼鈑株式会社 ハウスダストアレルギーの原因となるダニ・カビ類の検出・識別用マイクロアレイ
PT103729A (pt) * 2007-05-04 2008-11-04 Stab Vida Investigacao E Servi Estojo e processo para a detecção e identificação de leveduras de interesse clínico, através de uma amplificação isotérmica de adn seguida de hibridação com oligonucleótidos específicos, e respectivas utilizações.
JP5196847B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196850B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196843B2 (ja) 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5317430B2 (ja) * 2007-05-14 2013-10-16 キヤノン株式会社 プローブセット、プローブ担体、及び真菌の判別同定方法
JP5196866B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196845B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196846B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196856B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196861B2 (ja) 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196853B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196859B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196865B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196860B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196858B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196854B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
US7829735B2 (en) * 2007-10-26 2010-11-09 Northwestern University Universal phosphoramidite for preparation of modified biomolecules and surfaces
CA2715991A1 (en) 2007-12-26 2009-07-09 Gen-Probe Incorporated Amplification oligomers and methods to detect candida albicans 26s rrna or encoding dna
CA2720292A1 (en) * 2008-04-01 2009-10-08 Metametrix Clinical Laboratory Process and method for monitoring gastrointestinal microbiota
ES2335179B1 (es) * 2008-09-19 2011-09-14 Instituto De Salud Carlos Iii Metodo para la deteccion simultanea de histoplasma capsulatum y paracoccidioides brasiliensis.
MX352246B (es) 2009-03-18 2017-10-25 Instituto Potosino De Investig Cientifica Y Tecnologica A C Metodo in vitro para la deteccion de candida glabrata, kit de diagnostico y usos de los mismos.
PL2536850T3 (pl) 2010-02-15 2017-09-29 Council Of Scientific & Industrial Research Sposób wykrywania patogenów grzybiczych
US10214780B2 (en) 2012-03-09 2019-02-26 City University Of Hong Kong Method and means for identification of animal species
EP2636753B1 (en) * 2012-03-09 2018-07-25 City University of Hong Kong Method and means for identification of animal species
US10253353B2 (en) * 2013-12-06 2019-04-09 The Broad Institute, Inc. Enhanced methods of ribonucleic acid hybridization
CN105420372A (zh) * 2015-12-17 2016-03-23 安徽出入境检验检疫局检验检疫技术中心 检测梨黑斑病菌的pcr引物以及使用该引物的检测方法
CN107130015B (zh) * 2016-02-29 2023-07-11 上海翔琼生物技术有限公司 一种检测烟曲霉菌的荧光定量pcr试剂盒
CN106497796A (zh) * 2016-07-20 2017-03-15 辽宁省微生物科学研究院 一种食用菌菌种的单克隆高效选育方法
CN112626263B (zh) * 2021-01-20 2022-08-05 中国人民解放军总医院 酶切探针恒温检测呼吸道感染真菌病原体的试剂盒
CN112941231A (zh) * 2021-04-26 2021-06-11 南方海洋科学与工程广东省实验室(湛江) 一种用于白色念珠菌检测的探针、方法及应用
EP4577673A1 (en) * 2022-08-26 2025-07-02 Denka Company Limited Methods for the detection and identification of fungal species

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US546027A (en) * 1895-09-10 Edgar charles parker
WO1998050584A2 (en) * 1997-05-02 1998-11-12 THE GOVERNMENT OF THE UNITED STATES OF AMERICA as represented by THE SECRETARY OF THE DEPARTMENT OF HEALTH AND HUMAN SERVICES, c/o Centers for Disease Control and Prevention, Technology Transfer Offic Nucleic acids for detecting aspergillus species and other filamentous fungi

Family Cites Families (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4617102A (en) * 1985-03-21 1986-10-14 Lifecodes Corp. Process and apparatus for purifying and concentrating DNA from crude mixtures containing DNA
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
AU7429591A (en) * 1990-04-18 1991-10-24 Gene-Trak Systems Nucleic acid probes for the detection of giardia lamblia
DE69332202T2 (de) 1992-05-18 2003-05-28 Richard David Cannon Methoden zur diagnose von pilzinfektionen
US5426027A (en) 1993-05-20 1995-06-20 The Government Of The United States Of America As Represented By The Secretary Nucleic acid probes and methods for detecting Candida DNA cells in blood
US6017699A (en) * 1993-09-15 2000-01-25 The University Of Pittsburgh PCR identification and quantification of important Candida species
US5585238A (en) * 1994-04-25 1996-12-17 Ciba-Geigy Corporation Detection of fungal pathogens using the polymerase chain reaction
US5763169A (en) * 1995-01-13 1998-06-09 Chiron Diagnostics Corporation Nucleic acid probes for the detection and identification of fungi
US5693501A (en) 1995-03-08 1997-12-02 Indiana University Advanced Research & Technology Institute Compounds and methods to determine presence of Histoplasma capsulatum
EP0846186B1 (de) 1995-08-17 2008-02-20 Myconostica Limited Extraktion, amplifikation und sequentielle hybridisierung von pilzzellen-dna sowie verfahren zum nachweisen von pilzzellen in klinischem material
FR2749011B1 (fr) 1996-03-22 1998-08-28 Univ Claude Bernard Lyon Sonde, sequence nucleiques et procede notamment, de detection et d'identification de levures, de meme que les outils genetiques correspondants
US5874221A (en) 1996-08-28 1999-02-23 The United States Of America As Represented By The Secretary Of Agriculture Species specific method for the PCR detection of phythophthora
US6235890B1 (en) * 1996-09-16 2001-05-22 The United States Of America As Represented By The Department Of Health And Human Services Methods and compositions for the detection of Candida spp.
US5814453A (en) 1996-10-15 1998-09-29 Novartis Finance Corporation Detection of fungal pathogens using the polymerase chain reaction
US5800997A (en) 1996-11-01 1998-09-01 Novartis Finance Corporation Detection of maize fungal pathogens using the polymerase chain reaction
US6242178B1 (en) * 1997-07-30 2001-06-05 Centers For Disease Control And Prevention Nucleic acid probes for detecting Candida species
US5827695A (en) 1997-08-04 1998-10-27 Novartis Finance Corporation Detection of wheat fungal pathogens using the polymerase chain reaction
US6080543A (en) 1997-12-08 2000-06-27 E. & J. Gallo Winery Detection of fungal pathogens
JP4963765B2 (ja) * 1999-05-28 2012-06-27 イノジェネティックス・ナムローゼ・フェンノートシャップ 臨床的に重要な真菌病原体を検出するための核酸プローブおよび方法

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US546027A (en) * 1895-09-10 Edgar charles parker
WO1998050584A2 (en) * 1997-05-02 1998-11-12 THE GOVERNMENT OF THE UNITED STATES OF AMERICA as represented by THE SECRETARY OF THE DEPARTMENT OF HEALTH AND HUMAN SERVICES, c/o Centers for Disease Control and Prevention, Technology Transfer Offic Nucleic acids for detecting aspergillus species and other filamentous fungi

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
FUJITA, S. ET AL. 1995, JOURNAL OF CLINICAL MIC. 33:962-967 *

Also Published As

Publication number Publication date
EP1185702B1 (en) 2017-02-08
ES2621547T3 (es) 2017-07-04
US20050164243A1 (en) 2005-07-28
CA2374878C (en) 2014-10-14
JP4963765B2 (ja) 2012-06-27
JP2012120535A (ja) 2012-06-28
WO2000073499A2 (en) 2000-12-07
WO2000073499A3 (en) 2001-08-09
US6858387B1 (en) 2005-02-22
EP1185702A2 (en) 2002-03-13
JP2003501049A (ja) 2003-01-14
AU5525500A (en) 2000-12-18
CA2374878A1 (en) 2000-12-07
US7741461B2 (en) 2010-06-22

Similar Documents

Publication Publication Date Title
AU782305B2 (en) Nucleic acid probes and methods for detecting clinically important fungal pathogens
Martin et al. Development of a PCR-based line probe assay for identification of fungal pathogens
US7052836B2 (en) Nucleic acids for detecting fusarium species
JP4997277B2 (ja) Candidaspp.の検出のための方法および組成物
JP2002504817A (ja) 真菌の検出および同定のための核酸プローブ
JP2010075203A5 (enExample)
EP1945812B1 (en) Compositions and methods for the detection of candida species
US5693501A (en) Compounds and methods to determine presence of Histoplasma capsulatum
CA2211850A1 (en) Amplification primers and nucleic acid probes for the detection of coccidioides immitis
CA2484744A1 (en) Molecular identification of aspergillus species
EP2284276A1 (en) Identifying organisms by detecting intronic nucleic acid or encoded proteins
Meletiadis et al. Evaluation of a polymerase chain reaction reverse hybridization line probe assay for the detection and identification of medically important fungi in bronchoalveolar lavage fluids
Arancia et al. Construction and use of PCR primers from a 65 kDa mannoprotein gene for identification of C. albicans
Rodriguez-Villalobos et al. Cross reaction between a pan-Candida genus probe and Fusarium spp. in a fatal case of Fusarium oxysporum pneumonia
Rossau et al. Development of a PCR-Based Line Probe
WO2010061347A1 (en) Pcr based diagnostic method for the identification of clinically important candida species
Racil et al. Species-Specific Identification of a Wide
Ceceñas et al. PCR Assays for Identification of