CA2374878C - Nucleic acid probes and methods for detecting clinically important fungal pathogens - Google Patents

Nucleic acid probes and methods for detecting clinically important fungal pathogens Download PDF

Info

Publication number
CA2374878C
CA2374878C CA2374878A CA2374878A CA2374878C CA 2374878 C CA2374878 C CA 2374878C CA 2374878 A CA2374878 A CA 2374878A CA 2374878 A CA2374878 A CA 2374878A CA 2374878 C CA2374878 C CA 2374878C
Authority
CA
Canada
Prior art keywords
sample
seq
candida
probes
hybridization complexes
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
CA2374878A
Other languages
English (en)
French (fr)
Other versions
CA2374878A1 (en
Inventor
Terry Smith
Majella Maher
Cara Martin
Geert Jannes
Rudi Rossau
Marjo Van Der Weide
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fujirebio Europe NV SA
Enterprise Ireland
Original Assignee
Fujirebio Europe NV SA
Enterprise Ireland
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Fujirebio Europe NV SA, Enterprise Ireland filed Critical Fujirebio Europe NV SA
Publication of CA2374878A1 publication Critical patent/CA2374878A1/en
Application granted granted Critical
Publication of CA2374878C publication Critical patent/CA2374878C/en
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Immunology (AREA)
  • Mycology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Botany (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2374878A 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens Expired - Lifetime CA2374878C (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
EP99870109.8 1999-05-28
EP99870109 1999-05-28
US13862199P 1999-06-11 1999-06-11
US60/138,621 1999-06-11
PCT/EP2000/004714 WO2000073499A2 (en) 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens

Publications (2)

Publication Number Publication Date
CA2374878A1 CA2374878A1 (en) 2000-12-07
CA2374878C true CA2374878C (en) 2014-10-14

Family

ID=46506639

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2374878A Expired - Lifetime CA2374878C (en) 1999-05-28 2000-05-24 Nucleic acid probes and methods for detecting clinically important fungal pathogens

Country Status (7)

Country Link
US (2) US6858387B1 (enExample)
EP (1) EP1185702B1 (enExample)
JP (2) JP4963765B2 (enExample)
AU (1) AU782305B2 (enExample)
CA (1) CA2374878C (enExample)
ES (1) ES2621547T3 (enExample)
WO (1) WO2000073499A2 (enExample)

Families Citing this family (45)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP4963765B2 (ja) * 1999-05-28 2012-06-27 イノジェネティックス・ナムローゼ・フェンノートシャップ 臨床的に重要な真菌病原体を検出するための核酸プローブおよび方法
WO2001083821A2 (en) * 2000-05-01 2001-11-08 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of candida species
WO2002079512A2 (en) * 2001-03-29 2002-10-10 University Of Nevada - Las Vegas Method for detection and quantification of the fungus aspergillus fumigatus using quantitative pcr
WO2003080866A1 (en) * 2002-03-26 2003-10-02 Council Of Scientific And Industrial Research Novel primers for identifying aflatoxinogenic aspergilli and an improved use thereof
JP4377810B2 (ja) 2002-05-17 2009-12-02 アメリカ合衆国 アスペルギルス種の分子的同定方法
JP2004290171A (ja) * 2003-02-07 2004-10-21 Akira Hiraishi 微生物の分子生物学的同定技術
EP1690938A1 (de) * 2005-02-11 2006-08-16 Qiagen GmbH Verfahren zur Isolierung von Nukleinsäuren, wobei die Nukleinsäuren bei erhöhter Temperatur an einer Matrix immobilisiert werden
US20100311041A1 (en) 2005-06-14 2010-12-09 Statens Serum Institut Pcr diagnostics of dermatophytes and other pathogenic fungi
US20070050311A1 (en) * 2005-08-30 2007-03-01 Caterpillar Inc. Assembly should cost application
EP1945810B1 (en) * 2005-09-20 2015-07-01 AdvanDx, Inc. Reagents, methods and kits for classification of fungi and direction of anti-fungal therapy
JP2007159411A (ja) 2005-12-09 2007-06-28 Canon Inc プローブセット、プローブ固定担体及び遺伝子検査方法
WO2007101664A2 (de) * 2006-03-08 2007-09-13 Fungus Bioscience Gmbh Verbesserter aspergillosetest in klinischen proben
RU2348695C2 (ru) 2006-05-23 2009-03-10 Закрытое акционерное общество "Молекулярно-медицинские технологии" Дифференцирующий и специфический олигонуклеотиды для идентификации последовательностей днк инфекционных агентов в биологических материалах, способ видовой идентификации инфекционных агентов, биочип и набор для осуществления этого способа
JP5015518B2 (ja) * 2006-08-04 2012-08-29 東洋鋼鈑株式会社 ハウスダストアレルギーの原因となるダニ・カビ類の検出・識別用マイクロアレイ
PT103729A (pt) * 2007-05-04 2008-11-04 Stab Vida Investigacao E Servi Estojo e processo para a detecção e identificação de leveduras de interesse clínico, através de uma amplificação isotérmica de adn seguida de hibridação com oligonucleótidos específicos, e respectivas utilizações.
JP5196847B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196850B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196843B2 (ja) 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5317430B2 (ja) * 2007-05-14 2013-10-16 キヤノン株式会社 プローブセット、プローブ担体、及び真菌の判別同定方法
JP5196866B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196845B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196846B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196856B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196861B2 (ja) 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196853B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196859B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196865B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196860B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
JP5196858B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体、検査方法及びdna検出用キット
JP5196854B2 (ja) * 2007-05-14 2013-05-15 キヤノン株式会社 プローブセット、プローブ担体及び検査方法
US7829735B2 (en) * 2007-10-26 2010-11-09 Northwestern University Universal phosphoramidite for preparation of modified biomolecules and surfaces
CA2715991A1 (en) 2007-12-26 2009-07-09 Gen-Probe Incorporated Amplification oligomers and methods to detect candida albicans 26s rrna or encoding dna
CA2720292A1 (en) * 2008-04-01 2009-10-08 Metametrix Clinical Laboratory Process and method for monitoring gastrointestinal microbiota
ES2335179B1 (es) * 2008-09-19 2011-09-14 Instituto De Salud Carlos Iii Metodo para la deteccion simultanea de histoplasma capsulatum y paracoccidioides brasiliensis.
MX352246B (es) 2009-03-18 2017-10-25 Instituto Potosino De Investig Cientifica Y Tecnologica A C Metodo in vitro para la deteccion de candida glabrata, kit de diagnostico y usos de los mismos.
PL2536850T3 (pl) 2010-02-15 2017-09-29 Council Of Scientific & Industrial Research Sposób wykrywania patogenów grzybiczych
US10214780B2 (en) 2012-03-09 2019-02-26 City University Of Hong Kong Method and means for identification of animal species
EP2636753B1 (en) * 2012-03-09 2018-07-25 City University of Hong Kong Method and means for identification of animal species
US10253353B2 (en) * 2013-12-06 2019-04-09 The Broad Institute, Inc. Enhanced methods of ribonucleic acid hybridization
CN105420372A (zh) * 2015-12-17 2016-03-23 安徽出入境检验检疫局检验检疫技术中心 检测梨黑斑病菌的pcr引物以及使用该引物的检测方法
CN107130015B (zh) * 2016-02-29 2023-07-11 上海翔琼生物技术有限公司 一种检测烟曲霉菌的荧光定量pcr试剂盒
CN106497796A (zh) * 2016-07-20 2017-03-15 辽宁省微生物科学研究院 一种食用菌菌种的单克隆高效选育方法
CN112626263B (zh) * 2021-01-20 2022-08-05 中国人民解放军总医院 酶切探针恒温检测呼吸道感染真菌病原体的试剂盒
CN112941231A (zh) * 2021-04-26 2021-06-11 南方海洋科学与工程广东省实验室(湛江) 一种用于白色念珠菌检测的探针、方法及应用
EP4577673A1 (en) * 2022-08-26 2025-07-02 Denka Company Limited Methods for the detection and identification of fungal species

Family Cites Families (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US546027A (en) * 1895-09-10 Edgar charles parker
US4617102A (en) * 1985-03-21 1986-10-14 Lifecodes Corp. Process and apparatus for purifying and concentrating DNA from crude mixtures containing DNA
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
AU7429591A (en) * 1990-04-18 1991-10-24 Gene-Trak Systems Nucleic acid probes for the detection of giardia lamblia
DE69332202T2 (de) 1992-05-18 2003-05-28 Richard David Cannon Methoden zur diagnose von pilzinfektionen
US5426027A (en) 1993-05-20 1995-06-20 The Government Of The United States Of America As Represented By The Secretary Nucleic acid probes and methods for detecting Candida DNA cells in blood
US6017699A (en) * 1993-09-15 2000-01-25 The University Of Pittsburgh PCR identification and quantification of important Candida species
US5585238A (en) * 1994-04-25 1996-12-17 Ciba-Geigy Corporation Detection of fungal pathogens using the polymerase chain reaction
US5763169A (en) * 1995-01-13 1998-06-09 Chiron Diagnostics Corporation Nucleic acid probes for the detection and identification of fungi
US5693501A (en) 1995-03-08 1997-12-02 Indiana University Advanced Research & Technology Institute Compounds and methods to determine presence of Histoplasma capsulatum
EP0846186B1 (de) 1995-08-17 2008-02-20 Myconostica Limited Extraktion, amplifikation und sequentielle hybridisierung von pilzzellen-dna sowie verfahren zum nachweisen von pilzzellen in klinischem material
FR2749011B1 (fr) 1996-03-22 1998-08-28 Univ Claude Bernard Lyon Sonde, sequence nucleiques et procede notamment, de detection et d'identification de levures, de meme que les outils genetiques correspondants
US5874221A (en) 1996-08-28 1999-02-23 The United States Of America As Represented By The Secretary Of Agriculture Species specific method for the PCR detection of phythophthora
US6235890B1 (en) * 1996-09-16 2001-05-22 The United States Of America As Represented By The Department Of Health And Human Services Methods and compositions for the detection of Candida spp.
US5814453A (en) 1996-10-15 1998-09-29 Novartis Finance Corporation Detection of fungal pathogens using the polymerase chain reaction
US5800997A (en) 1996-11-01 1998-09-01 Novartis Finance Corporation Detection of maize fungal pathogens using the polymerase chain reaction
ATE320506T1 (de) * 1997-05-02 2006-04-15 Us Gov Health & Human Serv Nukleinsäuren zur erkennung von aspergillus spezien
US6242178B1 (en) * 1997-07-30 2001-06-05 Centers For Disease Control And Prevention Nucleic acid probes for detecting Candida species
US5827695A (en) 1997-08-04 1998-10-27 Novartis Finance Corporation Detection of wheat fungal pathogens using the polymerase chain reaction
US6080543A (en) 1997-12-08 2000-06-27 E. & J. Gallo Winery Detection of fungal pathogens
JP4963765B2 (ja) * 1999-05-28 2012-06-27 イノジェネティックス・ナムローゼ・フェンノートシャップ 臨床的に重要な真菌病原体を検出するための核酸プローブおよび方法

Also Published As

Publication number Publication date
EP1185702B1 (en) 2017-02-08
ES2621547T3 (es) 2017-07-04
US20050164243A1 (en) 2005-07-28
JP4963765B2 (ja) 2012-06-27
JP2012120535A (ja) 2012-06-28
WO2000073499A2 (en) 2000-12-07
WO2000073499A3 (en) 2001-08-09
US6858387B1 (en) 2005-02-22
EP1185702A2 (en) 2002-03-13
JP2003501049A (ja) 2003-01-14
AU5525500A (en) 2000-12-18
AU782305B2 (en) 2005-07-21
CA2374878A1 (en) 2000-12-07
US7741461B2 (en) 2010-06-22

Similar Documents

Publication Publication Date Title
CA2374878C (en) Nucleic acid probes and methods for detecting clinically important fungal pathogens
JP2003501049A5 (enExample)
Kurtzman et al. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5'end of the large-subunit (26S) ribosomal DNA gene
US5635353A (en) Nucleic acid probes and methods for detecting Candida krusei cells in blood
AU720037B2 (en) Methods and compositions for the detection of Candida spp.
Leaw et al. Identification of medically important Candida and non-Candida yeast species by an oligonucleotide array
WO1998055649A1 (en) Nucleic acid probes for the detection and identification of fungi
EP1062365A1 (en) Detection of fermentation-related microorganisms
Aguilera et al. A molecular approach to the characterization of the eukaryotic communities of an extreme acidic environment: methods for DNA extraction and denaturing gradient gel electrophoresis analysis
AU2006294692B2 (en) Compositions and methods for the detection of candida species
WO2008103015A1 (en) Methods, compositions and kits for increasing efficiency or specificity of hybridization between pna probes immobilized on support and target nucleic acids
US5693501A (en) Compounds and methods to determine presence of Histoplasma capsulatum
JP4499836B2 (ja) 食品を汚染する可能性のある耐熱性微生物の検出方法
US6046006A (en) Sequential hybridization of fungal cell DNA and method for the detection of fungal cells in clinical material
WO2001053316A1 (en) Detection of fermentation-related microorganisms
EP0860503A1 (en) Material and method for detecting fungi
Gupta et al. Exploratory study of single-copy genes and ribosomal intergenic spacers for rapid distinction of dermatophytes
US7465543B1 (en) Multiplex DNA identification of clinical yeasts using flow cytometry
EP1682674A2 (en) Methods for monitoring gene expression in filamentous fungal cells
Lott et al. Nucleic acid probes and methods for detecting Candida DNA cells in blood
US20020098487A1 (en) Materials and methods for detecting fungi
JP2002142774A (ja) 真菌検出用核酸及びそれを用いた真菌の検出方法
US20080096198A1 (en) Primer Having Promoter Region Added Thereto
Engelke Genome-wide search for RNase P substrates reveals nuclear RNase P is involved in maturation of intronencoded box C/D small nucleolar RNAs
JPWO1998010073A1 (ja) 真菌類の検出用材料及び検出法

Legal Events

Date Code Title Description
EEER Examination request
MKEX Expiry

Effective date: 20200524