AU2017359048B2 - Methods for expression profile classification - Google Patents

Methods for expression profile classification Download PDF

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AU2017359048B2
AU2017359048B2 AU2017359048A AU2017359048A AU2017359048B2 AU 2017359048 B2 AU2017359048 B2 AU 2017359048B2 AU 2017359048 A AU2017359048 A AU 2017359048A AU 2017359048 A AU2017359048 A AU 2017359048A AU 2017359048 B2 AU2017359048 B2 AU 2017359048B2
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cluster
node
cells
expression profiles
correlation
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AU2017359048A1 (en
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Jue FAN
Jing Hu
Jesse Zhang
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Becton Dickinson and Co
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    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/22—Indexing; Data structures therefor; Storage structures
    • G06F16/2228—Indexing structures
    • G06F16/2246—Trees, e.g. B+trees
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/28—Databases characterised by their database models, e.g. relational or object models
    • G06F16/283—Multi-dimensional databases or data warehouses, e.g. MOLAP or ROLAP
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/23—Clustering techniques
    • G06F18/231—Hierarchical techniques, i.e. dividing or merging pattern sets so as to obtain a dendrogram
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30—Unsupervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00—Subject matter not provided for in other groups of this subclass

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
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  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Evolutionary Computation (AREA)
  • General Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
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  • Epidemiology (AREA)
  • Bioethics (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Image Analysis (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
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AU2017359048A 2016-11-08 2017-11-07 Methods for expression profile classification Active AU2017359048B2 (en)

Priority Applications (1)

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AU2022241532A AU2022241532A1 (en) 2016-11-08 2022-09-29 Methods for expression profile classification

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US201662419291P 2016-11-08 2016-11-08
US62/419,291 2016-11-08
US201762446227P 2017-01-13 2017-01-13
US62/446,227 2017-01-13
PCT/US2017/060451 WO2018089378A1 (en) 2016-11-08 2017-11-07 Methods for expression profile classification

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AU2017359048B2 true AU2017359048B2 (en) 2022-07-21

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EP (1) EP3539035B1 (enExample)
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KR (1) KR102722820B1 (enExample)
CN (2) CN117594126A (enExample)
AU (2) AU2017359048B2 (enExample)
ES (1) ES2980967T3 (enExample)
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US20200255888A1 (en) 2019-02-12 2020-08-13 Becton, Dickinson And Company Determining expressions of transcript variants and polyadenylation sites
CN111581394B (zh) * 2020-04-30 2023-06-23 北京印刷学院 一种大规模知识地形图绘制方法
US20220414521A1 (en) * 2021-06-24 2022-12-29 International Business Machines Corporation Automated machine learning model transformation using artificial intelligence
KR102583916B1 (ko) * 2021-10-26 2023-09-26 연세대학교 산학협력단 저전력 테스트를 위한 스캔 상관관계 기반 스캔 클러스터 리오더링 방법 및 장치
US20240111883A1 (en) * 2022-09-29 2024-04-04 ForgeRock, Inc. Improved coalescence of roles for role-based access control
KR102597328B1 (ko) 2023-01-25 2023-11-02 주식회사 마키나락스 반도체 소자의 배치를 평가하기 위해 2중 클러스터링을 수행하는 방법
JP2024159251A (ja) 2023-04-28 2024-11-08 住友金属鉱山株式会社 厚膜抵抗体
CN117238378B (zh) * 2023-09-15 2024-04-26 杭州普罗亭医学检验实验室有限公司 基于密度估计和二次型距离的自动圈门方法、装置、设备及存储介质
CN119579799B (zh) * 2025-02-06 2025-04-18 之江实验室 一种基于多孔结构的三维模型生成方法、装置及电子设备

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