AU2001242124A1 - Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays - Google Patents
Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arraysInfo
- Publication number
- AU2001242124A1 AU2001242124A1 AU2001242124A AU4212401A AU2001242124A1 AU 2001242124 A1 AU2001242124 A1 AU 2001242124A1 AU 2001242124 A AU2001242124 A AU 2001242124A AU 4212401 A AU4212401 A AU 4212401A AU 2001242124 A1 AU2001242124 A1 AU 2001242124A1
- Authority
- AU
- Australia
- Prior art keywords
- organisms
- arrays
- biological
- micro
- identification
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 108091028043 Nucleic acid sequence Proteins 0.000 title 1
- 238000003491 array Methods 0.000 title 1
- 238000001514 detection method Methods 0.000 title 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Analytical Chemistry (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP00870055A EP1136566A1 (en) | 2000-03-24 | 2000-03-24 | Method and kit for detection and/or quantification of homologus nucleotide sequences on arrays |
| EP00870055 | 2000-03-24 | ||
| EP00870204 | 2000-09-15 | ||
| EP00870204 | 2000-09-15 | ||
| PCT/BE2001/000053 WO2001077372A2 (en) | 2000-03-24 | 2001-03-26 | Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| AU2001242124A1 true AU2001242124A1 (en) | 2001-10-23 |
Family
ID=26074232
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2001242124A Abandoned AU2001242124A1 (en) | 2000-03-24 | 2001-03-26 | Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays |
Country Status (5)
| Country | Link |
|---|---|
| US (1) | US7205104B2 (https=) |
| EP (1) | EP1266034A2 (https=) |
| JP (1) | JP2003530116A (https=) |
| AU (1) | AU2001242124A1 (https=) |
| WO (1) | WO2001077372A2 (https=) |
Families Citing this family (50)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20080085515A1 (en) * | 2000-03-24 | 2008-04-10 | Eppendorf Array Technologies Sa (Eat) | Identification of multiple biological (micro) organisms by detection of their nucleotide sequences on arrays |
| US7829313B2 (en) | 2000-03-24 | 2010-11-09 | Eppendorf Array Technologies | Identification and quantification of a plurality of biological (micro)organisms or their components |
| US20060281112A1 (en) * | 2000-03-24 | 2006-12-14 | Jose Remacle | Design of capture molecules for the detection of amplicons with high sensitivity |
| US7875442B2 (en) | 2000-03-24 | 2011-01-25 | Eppendorf Array Technologies | Identification and quantification of a plurality of biological (micro)organisms or their components |
| US8288128B2 (en) | 2004-11-18 | 2012-10-16 | Eppendorf Array Technologies S.A. | Real-time quantification of multiple targets on a micro-array |
| EP1164201A1 (en) * | 2000-06-14 | 2001-12-19 | Facultés Universitaires Notre-Dame de la Paix | Reverse detection for identification and/or quantification of nucleotide target sequences on biochips |
| EP1260592A1 (de) * | 2001-05-17 | 2002-11-27 | MWG -Biotech AG | Biochip |
| CA2348042A1 (en) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences for detection and identification of methicillin-resistant staphylococcus aureus |
| WO2003046221A1 (en) * | 2001-11-26 | 2003-06-05 | Institut Molekulyarnoi Biologii Im.V.A.Engelgardta Rossiiskoi Akademii Nauk | Method for the specific identification of orthopoxvirus with the aid of a miniature biological chip. |
| JP2004041109A (ja) * | 2002-07-12 | 2004-02-12 | Toshiba Corp | 核酸検出方法およびそれに使用されるプライマー |
| US20040086856A1 (en) * | 2002-07-26 | 2004-05-06 | Masayoshi Takahashi | Nucleic acid probe-immobilized substrate and method of detecting the presence of target nucleic acid by using the same |
| AU2004265570B2 (en) * | 2003-05-13 | 2009-01-08 | Gen-Probe Incorporated | Method and kit for identifying antibiotic-resistant microorganisms |
| FR2860801B1 (fr) * | 2003-10-10 | 2007-09-21 | Bertin Technologies Sa | Methode de detection rapide de micro-organismes sur puces a adn |
| WO2005042781A2 (en) | 2003-10-31 | 2005-05-12 | Agencourt Personal Genomics Corporation | Methods for producing a paired tag from a nucleic acid sequence and methods of use thereof |
| DK1698698T3 (da) * | 2003-12-05 | 2014-05-12 | Fuso Pharmaceutical Ind | Cytolethaldistenderende toksingener som mål for detektering af campylobacterbakterier |
| FI115637B (fi) * | 2003-12-19 | 2005-06-15 | Mobidiag Oy | Diagnostinen menetelmä hengitystieinfektioita aiheuttavien bakteerien osoittamiseksi ja tunnistamiseksi ja menetelmässä käyttökelpoinen alukeseos |
| WO2005063985A1 (en) | 2003-12-25 | 2005-07-14 | Canon Kabushiki Kaisha | Probe set and method for identifying hla allele |
| US7338763B2 (en) * | 2004-06-02 | 2008-03-04 | Eppendorf Array Technologies S.A. | Method and kit for the detection and/or quantification of homologous nucleotide sequences on arrays |
| AU2005335216A1 (en) * | 2004-10-05 | 2007-02-15 | Wyeth | Probe arrays for detecting multiple strains of different species |
| EP1529849A3 (en) * | 2004-10-06 | 2005-11-02 | De Ceuster NV | Reliable method for assessing and reporting the risks of disease, contamination and losses caused by one or more microorganisms in a matrix or environment |
| EP1812594B1 (en) | 2004-11-18 | 2013-01-09 | Eppendorf Array Technologies | Real-time quantification of multiple targets on a micro-array |
| EP1724360A1 (en) * | 2005-05-17 | 2006-11-22 | Eppendorf Array Technologies S.A. | Identification and/or quantification method of nucleotide sequence(s) elements specific of genetically modified plants on arrays |
| US20080293057A1 (en) * | 2005-05-17 | 2008-11-27 | Eppendorf Array Technologies S.A. | Detection of unspecified genetically modified organism (gmo) on micro-arrays |
| EP1736780A1 (en) | 2005-06-24 | 2006-12-27 | Eppendorf Array Technologies S.A. | Method and means for detecting and/or quantifying hierarchical molecular change of a cell in response to an external stimulus |
| EP1762628B1 (en) | 2005-09-13 | 2008-03-12 | Eppendorf Array Technologies SA | Detection method of homologous sequences differing by one base on a microarray |
| US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
| DE602006021269D1 (de) * | 2005-11-18 | 2011-05-26 | Eppendorf Array Tech Sa | Reaktionsgefäss zur Real-time PCR umfassend Oligonukleotidproben wobei die Amplifikationsprodukte durch Hybridisierung und ohne Öffnen des Reaktionsgefässes gemessen werden |
| WO2007132001A1 (en) * | 2006-05-17 | 2007-11-22 | Eppendorf Array Technologies S.A. | Design of capture molecules for the detection of amplicons with high sensitivity |
| US11098345B2 (en) | 2006-06-05 | 2021-08-24 | California Institute Of Technology | Methods for detecting target analytes |
| WO2008014485A2 (en) | 2006-07-28 | 2008-01-31 | California Institute Of Technology | Multiplex q-pcr arrays |
| US11525156B2 (en) | 2006-07-28 | 2022-12-13 | California Institute Of Technology | Multiplex Q-PCR arrays |
| US11560588B2 (en) | 2006-08-24 | 2023-01-24 | California Institute Of Technology | Multiplex Q-PCR arrays |
| CA2718214C (en) | 2007-08-24 | 2018-09-11 | Osaka Prefecture University | Detection of bacteria belonging to the genus campylobacter by targeting cytolethal distending toxin |
| US8586327B2 (en) | 2007-08-31 | 2013-11-19 | Osaka Prefecture University | Detection of bacteria belonging to the genus Campylobacter by targeting cytolethal distending toxin |
| EP2077337A1 (en) | 2007-12-26 | 2009-07-08 | Eppendorf Array Technologies SA | Amplification and detection composition, method and kit |
| EP2235217B1 (en) | 2008-01-09 | 2016-04-20 | Life Technologies Corporation | Method of making a paired tag library for nucleic acid sequencing |
| WO2012044847A1 (en) | 2010-10-01 | 2012-04-05 | Life Technologies Corporation | Nucleic acid adaptors and uses thereof |
| KR101072899B1 (ko) * | 2008-01-21 | 2011-10-17 | 주식회사 파나진 | 아미노산 스페이서가 결합된 펩티드 핵산의 합성 및 그의응용 |
| EP2107125A1 (en) | 2008-03-31 | 2009-10-07 | Eppendorf Array Technologies SA (EAT) | Real-time PCR of targets on a micro-array |
| US20100323910A1 (en) * | 2009-01-30 | 2010-12-23 | Baker Hughes Incorporated | DNA Microarray for Quantitative Detection of Microbial Processes in the Oilfield |
| EP2369325A1 (en) | 2010-03-12 | 2011-09-28 | Eppendorf Ag | Array analysis for online detection |
| ES2578178T3 (es) | 2011-10-21 | 2016-07-21 | Boston Scientific Scimed, Inc. | Boca de conexión de catéter de bloqueo |
| CN104024410A (zh) * | 2011-12-28 | 2014-09-03 | 凸版印刷株式会社 | Hla-a*24组的判定方法 |
| WO2017147345A1 (en) * | 2016-02-23 | 2017-08-31 | Arc Bio, Llc | Methods and compositions for target detection |
| WO2017155858A1 (en) | 2016-03-07 | 2017-09-14 | Insilixa, Inc. | Nucleic acid sequence identification using solid-phase cyclic single base extension |
| EP3610043A1 (en) | 2017-04-12 | 2020-02-19 | Saudi Arabian Oil Company | Biochips and rapid methods for detecting organisms involved in microbially influenced corrosion (mic) |
| US20220267833A1 (en) * | 2019-07-19 | 2022-08-25 | Safeguard Biosystems Holdings Ltd. | Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms |
| CN116745434A (zh) * | 2021-01-20 | 2023-09-12 | 保障生物系统控股有限公司 | 基因组序列的改进的检测及其探针分子 |
| KR20230134556A (ko) * | 2021-01-20 | 2023-09-21 | 세이프가드 바이오시스템스 홀딩스 엘티디. | 개선된 게놈 시퀀스의 검출 및 이를 위한 탐침 분자 |
| WO2025049432A1 (en) * | 2023-08-28 | 2025-03-06 | Intellia Therapeutics, Inc. | Methods for editing hla-a in cells pre-screened for the absence of one or both alleles of hla-h*01 |
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| JP2897959B2 (ja) | 1988-05-20 | 1999-05-31 | エフ.ホフマン―ラ ロシュ アクチェンゲゼルシャフト | 固定化された配列特異的プローブ |
| US5143854A (en) | 1989-06-07 | 1992-09-01 | Affymax Technologies N.V. | Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof |
| US5800992A (en) * | 1989-06-07 | 1998-09-01 | Fodor; Stephen P.A. | Method of detecting nucleic acids |
| RU1794088C (ru) | 1991-03-18 | 1993-02-07 | Институт Молекулярной Биологии Ан@ Ссср | Способ определени нуклеотидной последовательности ДНК и устройство дл его осуществлени |
| EP0511559A1 (en) | 1991-04-30 | 1992-11-04 | F.Hoffmann-La Roche & Co. Aktiengesellschaft | Oligonucleotide probe reagent |
| EP0656065A1 (en) | 1991-10-31 | 1995-06-07 | University Of Pittsburgh | Reverse dot blot hybridization using tandem head-to-tail monomers containing probes synthesized by staggered complementary primers |
| EP0540997A1 (en) * | 1991-11-05 | 1993-05-12 | F. Hoffmann-La Roche Ag | Methods and reagents for HLA class I DNA typing |
| US5981179A (en) | 1991-11-14 | 1999-11-09 | Digene Diagnostics, Inc. | Continuous amplification reaction |
| US5405940A (en) * | 1992-08-31 | 1995-04-11 | Ludwig Institute For Cancer Research | Isolated nonapeptides derived from MAGE genes and uses thereof |
| US5508384A (en) * | 1992-09-10 | 1996-04-16 | New York University | Polypeptide derived from a popamine receptor, and compositions and methods thereof |
| US5312527A (en) | 1992-10-06 | 1994-05-17 | Concordia University | Voltammetric sequence-selective sensor for target polynucleotide sequences |
| US6255059B1 (en) * | 1993-03-31 | 2001-07-03 | Cadus Pharmaceutical Corporation | Methods for identifying G protein coupled receptor effectors |
| IL109410A0 (en) * | 1993-04-30 | 1994-07-31 | Ell Lilly & Company | Fema gene of staphylococcus epidermidis, fema protein, and vectors and microorganisms comprising the fema gene |
| RU2041261C1 (ru) * | 1993-08-11 | 1995-08-09 | Институт молекулярной биологии им.В.А.Энгельгардта РАН | Способ изготовления матрицы для детектирования мисматчей |
| JPH09507121A (ja) | 1993-10-26 | 1997-07-22 | アフィマックス テクノロジーズ ナームロゼ ベノートスハップ | 生物学的チップ上の核酸プローブアレー |
| US5538848A (en) * | 1994-11-16 | 1996-07-23 | Applied Biosystems Division, Perkin-Elmer Corp. | Method for detecting nucleic acid amplification using self-quenching fluorescence probe |
| US5807522A (en) * | 1994-06-17 | 1998-09-15 | The Board Of Trustees Of The Leland Stanford Junior University | Methods for fabricating microarrays of biological samples |
| US5736257A (en) | 1995-04-25 | 1998-04-07 | Us Navy | Photoactivatable polymers for producing patterned biomolecular assemblies |
| JP2002515738A (ja) | 1996-01-23 | 2002-05-28 | アフィメトリックス,インコーポレイティド | 核酸分析法 |
| US5861247A (en) | 1996-01-26 | 1999-01-19 | University Of Chicago | Rapid method to detect duplex formation in sequencing by hybridization methods |
| EP0937159A4 (en) | 1996-02-08 | 2004-10-20 | Affymetrix Inc | SPECIATION OF MICROORGANISMS FROM MICROPLATES AND CHARACTERIZATION OF THE PHENOTYPES THEREOF |
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| WO1998011253A2 (fr) | 1996-09-09 | 1998-03-19 | Remacle Jose | Procede et trousse de diagnostic et/ou de quantification par hybridation de type sandwich de sequences d'acides nucleiques sur support solide |
| GB9622665D0 (en) | 1996-10-31 | 1997-01-08 | Zeneca Ltd | Methods |
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| US6207648B1 (en) * | 1997-07-24 | 2001-03-27 | Trustees Of Boston University | Methods of using cytochrome P450 reductase for the enhancement of P450-based anti-cancer gene therapy |
| JP2001518283A (ja) | 1997-09-26 | 2001-10-16 | ユニヴェルシテ カトリク ド ルヴァン | ブドウ球菌株の同定のための遺伝子配列、診断及び/又は定量法及び装置 |
| CN1230682C (zh) | 1997-12-30 | 2005-12-07 | 埃佩多夫阵列技术股份有限公司 | 探测和量化目标分子的方法及探测和读取装置 |
| US6306643B1 (en) * | 1998-08-24 | 2001-10-23 | Affymetrix, Inc. | Methods of using an array of pooled probes in genetic analysis |
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| ATE225940T1 (de) | 1999-05-19 | 2002-10-15 | Advanced Array Technologies S | Verfahren zur identifizierung und/oder quantifizierung einer zielverbindung |
| US6770441B2 (en) * | 2000-02-10 | 2004-08-03 | Illumina, Inc. | Array compositions and methods of making same |
| US7202026B2 (en) * | 2000-03-24 | 2007-04-10 | Eppendorf Array Technologies Sa (Eat) | Identification of a large number of biological (micro)organisms groups at different levels by their detection on a same array |
| WO2003057380A2 (en) * | 2002-01-11 | 2003-07-17 | Whitlock David R | Compositions including ammonia oxidizing bacteria and methods of using same |
| US20060003308A1 (en) * | 2004-05-12 | 2006-01-05 | Bio-Rad Laboratories, Inc. | Electrocompetent cells prepackaged for electroporation |
-
2001
- 2001-03-23 US US09/817,014 patent/US7205104B2/en not_active Expired - Fee Related
- 2001-03-26 EP EP01914852A patent/EP1266034A2/en not_active Withdrawn
- 2001-03-26 AU AU2001242124A patent/AU2001242124A1/en not_active Abandoned
- 2001-03-26 JP JP2001575226A patent/JP2003530116A/ja active Pending
- 2001-03-26 WO PCT/BE2001/000053 patent/WO2001077372A2/en not_active Ceased
Also Published As
| Publication number | Publication date |
|---|---|
| WO2001077372A2 (en) | 2001-10-18 |
| EP1266034A2 (en) | 2002-12-18 |
| WO2001077372A3 (en) | 2002-06-13 |
| JP2003530116A (ja) | 2003-10-14 |
| US20020106646A1 (en) | 2002-08-08 |
| US7205104B2 (en) | 2007-04-17 |
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