WO2020259497A1 - 一种新化合物及其应用 - Google Patents
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- WO2020259497A1 WO2020259497A1 PCT/CN2020/097732 CN2020097732W WO2020259497A1 WO 2020259497 A1 WO2020259497 A1 WO 2020259497A1 CN 2020097732 W CN2020097732 W CN 2020097732W WO 2020259497 A1 WO2020259497 A1 WO 2020259497A1
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- 0 C*(CC(N(C1)C(CO)CC1NC(*(*(C)CNC)N)=O)=O)*(C)NC Chemical compound C*(CC(N(C1)C(CO)CC1NC(*(*(C)CNC)N)=O)=O)*(C)NC 0.000 description 15
- VSXKUYVSTHKELF-UHFFFAOYSA-N CCCC(N(CC1)CCC1C(CO)COC(c1ccccc1)(c(cc1)ccc1OC)OC)=O Chemical compound CCCC(N(CC1)CCC1C(CO)COC(c1ccccc1)(c(cc1)ccc1OC)OC)=O VSXKUYVSTHKELF-UHFFFAOYSA-N 0.000 description 1
- FKJUDNAIMFBSKM-UHFFFAOYSA-N CCOc1ccc(C(c2ccccc2)(c(cc2)ccc2OC)OCC(CNC(C(F)(F)F)=O)N=O)cc1 Chemical compound CCOc1ccc(C(c2ccccc2)(c(cc2)ccc2OC)OCC(CNC(C(F)(F)F)=O)N=O)cc1 FKJUDNAIMFBSKM-UHFFFAOYSA-N 0.000 description 1
- SXHNDLSFNCKDCO-UHFFFAOYSA-N COC(CCCCCCC(N(CC1)CCC1C(CN=O)CN=O)=O)=O Chemical compound COC(CCCCCCC(N(CC1)CCC1C(CN=O)CN=O)=O)=O SXHNDLSFNCKDCO-UHFFFAOYSA-N 0.000 description 1
- OLCBHYDWJGPZSF-UHFFFAOYSA-N COc1ccc(C(c2ccccc2)(c(cc2)ccc2OC)OCC(CC(C2)N=O)N2C(CCCCCCC(O)=O)=O)cc1 Chemical compound COc1ccc(C(c2ccccc2)(c(cc2)ccc2OC)OCC(CC(C2)N=O)N2C(CCCCCCC(O)=O)=O)cc1 OLCBHYDWJGPZSF-UHFFFAOYSA-N 0.000 description 1
- CCUJMWOYQLFNRC-UHFFFAOYSA-N O=C(C(F)(F)F)NCC(CN=O)N=O Chemical compound O=C(C(F)(F)F)NCC(CN=O)N=O CCUJMWOYQLFNRC-UHFFFAOYSA-N 0.000 description 1
- AHACCMBEHGDSDJ-UHFFFAOYSA-N O=C(CCOCC(COCCC(N=O)=O)NC(OCc1ccccc1)=O)N=O Chemical compound O=C(CCOCC(COCCC(N=O)=O)NC(OCc1ccccc1)=O)N=O AHACCMBEHGDSDJ-UHFFFAOYSA-N 0.000 description 1
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Definitions
- the invention relates to a new compound and its application to the inhibition of HBV gene expression.
- the structure of the compound contains interfering nucleic acid that inhibits HBV gene expression, a transfer point and its terminal modified chain. By modifying the end of the chain, two to three N-acetylgalactosamines can be introduced at the 3'end of the antisense strand of this siRNA, and two to one N-acetylgalactose can be introduced at the 5'end of the sense strand. Amine, the total number of introduced N-acetylgalactosamine is four. The efficacy experiments of HepG 2 cells and transgenic mice proved that this new compound can continue to inhibit the expression of HBV HBsAg, HBeAg and HBV DNA.
- RNAi RNA interference
- dsRNA double-stranded RNA
- RNAi an endonuclease called “Dicer” cuts or “cuts” long-stranded dsRNA. "D” into small fragments 21-25 nucleotides long. These small fragments are called small interfering RNA (siRNA), and the antisense strand (Guide Strand) is loaded onto the Argonaute protein (AGO2).
- siRNA small interfering RNA
- AGO2 loading occurs in the RISC-loading complex, which is a ternary complex composed of Argonaute protein, Dicer, and dsRNA binding protein (referred to as TRBP).
- TRBP dsRNA binding protein
- AGO2 uses the antisense strand to bind to the mRNA containing the fully complementary sequence, and then catalyzes the cleavage of these mRNAs, causing the mRNA to split and lose the role of translation template, thereby preventing the synthesis of related proteins. After cleavage, the cleaved mRNA is released, and the RISC-loading complex loaded with the antisense strand is recycled for another round of cleavage.
- RNAi technology treats diseases at the mRNA level, and has higher efficiency than chemical small molecule drugs and biological macromolecular drugs at the protein level.
- the sense strand and antisense strand sequences of siRNA with high specificity and good inhibitory effect can be designed according to specific gene sequences. These single-stranded sequences are synthesized through solid phase, and then the sense strand and antisense strand are annealed in a specific manner. The buffer is paired into siRNA according to the base-pairing principle, and finally delivered to the corresponding target in the body through the carrier system to degrade the target mRNA and destroy the function of the target mRNA as a translation template, thereby preventing the synthesis of related proteins.
- siRNA is unstable in blood and tissues and is easily degraded by nucleases.
- siRNA backbone can be modified, but these chemical modifications only provide limited protection from nuclease degradation and may eventually affect siRNA ⁇ activity. Therefore, a corresponding delivery system is also needed to ensure the safe and efficient passage of siRNA through the cell membrane. Because siRNA has a large molecular weight, a large amount of negative charge, and high water solubility, it cannot smoothly cross the cell membrane to reach the cell.
- liposomes The basic structure of liposomes is composed of a hydrophilic core and a phospholipid bilayer. It has a phospholipid bilayer similar to a biological membrane and has high biocompatibility. Therefore, liposomes were once the most popular and most widely used.
- siRNA carrier Liposome-mediated siRNA delivery mainly encapsulates siRNA into liposomes, protects siRNA from degradation by nucleases, improves the efficiency of siRNA through cell membrane barriers, and promotes cell absorption. For example, anionic liposomes, pH-sensitive liposomes, immunoliposomes, fusogenic liposomes and cationic lipids, etc. Although certain progress has been made, liposomes themselves are prone to trigger inflammation.
- the asialoglycoprotein receptor (ASGPR) in the liver is a receptor specifically expressed by hepatocytes and a highly efficient endocytic receptor.
- ASGPR asialoglycoprotein receptor
- the sugar specifically bound by ASGPR is galactosyl, so it is also called galactose specific receptor .
- Monosaccharide and polysaccharide molecules such as galactose, galactosamine, and N-acetylgalactosamine have high affinity for ASGPR.
- ASGPR The main physiological function of ASGPR is to mediate the elimination of asialoglycoprotein, lipoprotein and other substances in the blood, and is closely related to the occurrence and development of liver diseases such as viral hepatitis, cirrhosis, and liver cancer.
- liver diseases such as viral hepatitis, cirrhosis, and liver cancer.
- the discovery of this characteristic of ASGPR plays an important role in the diagnosis and treatment of liver-derived diseases (Ashwell G, Harford J, Carbohydrate specific Receptors of the Liver, Ann Rev Biochem 1982 51:531-554).
- the therapeutic drugs for liver-derived diseases containing galactose or galactosamine and its derivatives in the structure can specifically affinity with ASGPR, so that it has active liver targeting and does not require other carrier systems for delivery.
- the invention relates to a new compound and its application to the inhibition of HBV gene expression.
- the structure of the compound contains interfering nucleic acid that inhibits HBV gene expression, a transfer point and its terminal modified chain. The terminal modified strand and the interfering nucleic acid are connected through a transfer point.
- two or three N-acetylgalactosamine can be introduced at the 3'end of the antisense strand of this siRNA, and two or one N-acetylgalactose can be introduced correspondingly at the 5'end of the sense strand.
- Amine a total of four N-acetylgalactosamine, is a brand-new introduction method. Through in vivo and in vitro pharmacodynamic experiments, this new compound can continue to efficiently express HBV HBsAg, HBeAg and HBV DNA. inhibition.
- a compound containing an interfering nucleic acid that inhibits HBV gene expression, a transfer point, and a terminal modified chain thereof in a structure is provided.
- the terminal modified chain is composed of a connecting chain D, a linker B, a branched chain L, and a liver.
- the targeting specific ligand X is composed of, the terminal modified strand and the interfering nucleic acid are connected by a transfer point R 1 /R 2 and the structure is shown in the general formula (I):
- n When n is 1, m is 3; when n is 2, m is also 2;
- R 1 is -NH(CH 2 ) x CH 2 -, where x can be an integer of 3-10;
- R 2 is -NHCH 2 CH(OH)CH 2 (OH)-, or other nitrogen-containing structure with both primary and secondary alcohols or a single primary alcohol.
- This structure can be a straight chain or a straight chain with The branched chain may also have a cyclic structure.
- R 2 can be a pyrrole ring or a piperidine ring with primary and secondary alcohols, specifically selected from the following structures:
- the liver targeting specific ligand X is selected from galactose, galactosamine and N-acetylgalactosamine;
- the branched chain L is a C3-C18 straight chain, and the straight chain contains a carbonyl group, an amide group, a phosphoryl group, an oxygen atom or a combination of these groups;
- the linker B is selected from the following structural formulas:
- a 2 is C, O, S, amino, carbonyl, amide, phosphoryl or sulfur Phosphoryl;
- the linking chain D contains C5-C20, which contains an amino group, a carbonyl group, an amide group, an oxygen atom, a sulfur atom, a thiophosphoryl group, a phosphoryl group, a cyclic structure or a combination of these groups.
- the interfering nucleic acid includes but is not limited to siRNA, miRNA or Agomir, preferably siRNA, more preferably siRNA against hepatitis B virus.
- the sequence design of the 19mer of the siRNA used for HBV RNAi is designed according to the HBV cDNA target sequence (GenBank Accession#AF100309.1). These target sequences include the core region of 19mer de1 and the corresponding DNA sequences that are mainly expanded or displaced based on these core regions. Its purpose is to find the best effective sequence through the basic target site, and these sequences can be partially or fully adapted to the target site and can be used to treat chronic hepatitis B.
- the 19mer nucleotide sequence of the target includes two strands, the sense strand (S) and the antisense strand (AS).
- the 19th nucleotide (5′ ⁇ 3′) of the sense strand can be formed with the first nucleotide (5′ ⁇ 3′) of the antisense strand according to the Watson-Crick principle Base pairs.
- the 1-19 bases of the sense strand (5' ⁇ 3') can pair with the 19-1 bases of the antisense strand (5' ⁇ 3') and its corresponding bases to form a double strand.
- One to three unpaired bases can be tolerated in the terminal position in the double strand.
- the basic sequence of HBV siRNA can be screened according to actual applications. Shift the 3'or 5'end according to the basic sequence to screen out more effective and specific sequences.
- the best choice for the single-stranded protruding part at the 3'end of the sense strand or the antisense strand is TT, UU, AU, or UA to obtain the changed sequence.
- Any sense strand can be used to form a double strand with the antisense strand, and the two strands must maintain a continuous base pairing of at least 16, 17, 18, 19, 20, 21, 22, or 23. Some of the listed sequences may be 1, 2, or 3 different from the target.
- the last base at the 3'end of the sense strand can be U, A, or T.
- the last position at the 3'end of the antisense strand can be U, A, or T.
- the present invention screens out the following candidate sequences:
- each monomer of siRNA is modified without affecting or even enhancing the activity.
- one, two or three incompletely matched bases can be allowed.
- the nucleotides can have different modification groups, and they can be whole chain or part modified. There can be one, multiple, or even all thio-containing bases in each chain.
- the modified sense strand and antisense strand are selected from the following sequences:
- mG 2'-O-methylguanylic acid
- mA 2'-O-methyladenosine
- mU 2'-O-methyluronic acid
- mC 2'-O-methylcytidine acid
- mGs 2'-O-methyl-3'-thioguanylic acid
- mAs 2'-O-methyl-3'-thioadenosine
- mUs 2'-O-methyl-3'- Thioururic acid
- mCs 2'-O-methyl-3'-thiocytidylic acid
- fG 2'-fluoroguanylic acid
- fA 2'-fluoroadenylic acid
- fU 2'-fluorouridine acid
- fC 2'-fluorocytidine acid
- fGs 2'-fluoro-3'-thioguanylic acid
- fAs 2'-fluoro-3'-thioadenylic acid
- fUs 2'-fluoro-3'-thiouridine acid
- fCs 2'-Fluoro-3'-thiocytidylic acid.
- the modified sense strand and antisense strand are selected from the following sequences:
- the terminal modified chain is composed of a connecting chain D, a linker B, a branched chain L containing a sterically stable structure, and a liver targeting specific ligand X.
- the general formula (II) of the terminal modified chain is:
- the liver targeting specific ligand X may be one or more polysaccharides, polysaccharide derivatives, or monosaccharides and monosaccharide derivatives.
- the general formula (III) of the liver targeting specific ligand X is:
- R 1 , R 2 and R 3 are respectively hydrogen or a hydroxyl protecting group.
- the liver targeting specific ligand X is selected from one or more of galactose, galactosamine, N-acetylgalactosamine or the following structures:
- R 1 is selected from one or two of OH, NHCOH or NHCOCH 3 .
- the branched chain L containing a sterically hindered stable structure is a C3-C18 straight chain, which contains one or more carbonyl groups, amide groups, phosphoryl groups, oxygen atoms or a combination of these groups, which can be selected from the following structures One or more of:
- r1 is a positive integer of 1-12
- r2 is an integer of 0-20
- Z is H or CH 3 .
- the linker B is selected from the following structural formulas:
- the linker B is selected from the following structural formulas:
- r1, r3, r4, and r5 are positive integers from 1-15, respectively; r6 is a positive integer from 1-20, r7 is a positive integer from 2-6, and r8 is a positive integer from 1-3.
- linker B is selected from the following structures:
- the linking chain D contains C5-C20, and may contain an amino group, a carbonyl group, an amide group, an oxygen atom, a sulfur atom, a thiophosphoryl group, a phosphoryl group, a cyclic structure or a combination of these groups.
- the connecting chain D is selected from one of the following structures:
- each n is a positive integer from 1-20, and each n is the same or different positive integer.
- p is a positive integer of 1-6;
- s is a positive integer of 2-13;
- R 1 and R 2 are the same or different substituent groups, and their structural formula is one of the following structures: -H, -CH 3 ,- CH-(CH 3 ) 2 , -CH 2 -CH(CH 3 ) 2 , -CH(CH 3 )-CH 2 -CH 3 , -CH 2 -C 6 H 5 , -C 8 NH 6 , -CH 2 -C 6 H 4 -OH, -CH 2 -COOH, -CH 2 -CONH 2 , -(CH 2 ) 2 -COOH, -(CH 2 ) 4 -NH 2 , -(CH 2 ) 2 -CONH 2 , -(CH 2 )-S-CH 3 , -CH 2 -OH, -CH(CH
- connecting chain D is selected from one of the following structures:
- the modified chain at the 5'end of the sense chain has one N-acetylgalactosamine or two N-acetylgalactosamine, selected from one of the following structures:
- the modified chain at the 5'end of the sense chain of the compound is selected from the structural formulas in the following table:
- the modified chain at the 3'end of the antisense strand of the compound has two or three N-acetylgalactosamines, and the modified chain One of the following structures:
- the modified chain at the 3'end of the antisense strand of the compound is preferably selected from the structural formulas in the following table:
- the combination of the 5'end modified strand of the sense strand and the 3'end modified strand of the antisense strand in the compound is preferably one of the structures shown in the following table:
- the compound of the present invention includes the 5'end of the sense strand and the 3'end of the antisense strand with access to the modified chain as shown in the following table:
- the structure of the compound of the present invention is shown in the following table:
- liver-related diseases include acute and chronic hepatitis, liver cancer, inherited liver-derived diseases, liver Cirrhosis, fatty liver, diabetes.
- Another aspect of the present invention provides the application of the compound of the present invention in the preparation of a medicament for the treatment of HBV infection related diseases, wherein the HBV infection includes chronic hepatitis B virus infection and acute hepatitis B virus infection .
- the liver-targeting specific ligand X is specific for the asialoglycoprotein receptor (ASGPR) in the liver, the related disease of HBV infection is chronic hepatitis B, and the compound can continuously make HBV The expression of HBsAg, HBeAg and HBV DNA is suppressed.
- ASGPR asialoglycoprotein receptor
- Another aspect of the present invention provides a pharmaceutical composition
- a pharmaceutical composition comprising the compound of the present invention and pharmaceutically acceptable auxiliary materials, and the preferred dosage form is a subcutaneous injection.
- liposome-mediated siRNA delivery mainly involves liposomes encapsulating siRNA into liposomes, protecting siRNA from degradation by nucleases, and improving the barriers of siRNA passing through cell membranes. The efficiency, thereby promoting cell absorption.
- Liposomes such as anionic liposomes, pH-sensitive liposomes, immunoliposomes, fusogenic liposomes and cationic lipids, etc.
- liposomes are easy to Inflammation is triggered, a variety of antihistamines and hormones such as ceritizine and dexamethasone must be used before administration to reduce the possible acute inflammation, so it is not suitable for all therapeutic areas in actual clinical applications Especially for diseases with long treatment cycles like chronic hepatitis B, the accumulated toxicity produced by long-term use may be a potential safety hazard.
- the siRNA drugs currently in phase I/II for the treatment of chronic hepatitis B include ARO-HBV and ALN-HBV02.
- ARO-HBV is at the 5'end of the sense strand of siARNA, and three N-acetylgalactosamine is introduced through the linking strand;
- ALN-HBV02 is at the 3'end of the siRNA sense strand, and three N-acetyl halves are introduced through the linking strand Lactosamine.
- the above-mentioned drugs introduce galactosamine in the sense chain, and all three N-acetylgalactosamines are introduced.
- the 5'end of the siRNA sense strand and the 3'end of the antisense strand simultaneously introduce different or the same amount of N-acetylgalactosamine.
- N-acetylgalactosamine at the 5'end and antisense strand of the sense strand.
- the introduction of the 3'end of the chain at the same time, especially the introduction of three N-acetylgalactosamines at the 3'of the antisense strand is a brand-new introduction method. It is demonstrated through the demonstration that this introduction method enables siRNA to effectively inhibit HBV The effect of genes.
- Figure 1 is a high-resolution mass spectrum of 5’YICd-01-c4;
- Figure 2 is a high-resolution mass spectrum of 5’YICc-01-c7;
- Figure 3 is a high-resolution mass spectrum of 5’ERCd-01-c7;
- Figure 4 is a high-resolution mass spectrum of 5’ERCc-01-c4;
- Figure 5 is a high-resolution mass spectrum of 3’SANCd-01-c6;
- Figure 6 is a bar graph showing the inhibitory effect on HBsAg in HepG2.215 cells
- Figure 7 is a bar graph showing the inhibitory effect on HBeAg in HepG2.215 cells
- Figure 8 is a bar graph showing the inhibitory effect on HBVDNA in HepG2.215 cells
- Figure 9 is a bar graph showing the inhibitory effect of HBV gene on transgenic mouse model
- Figure 10 shows the effect of GBL-0401 on inhibiting HBV and HBsAg in vivo.
- the Chinese name of DMF is N,N-dimethylformamide
- HBTU O-benzotriazole-tetramethylurea hexafluorophosphate
- DIPEA N,N-diisopropylethylamine
- the Chinese name of DCM is dichloromethane
- the Chinese name of DMAP is 4-dimethylaminopyridine
- DMT-CL 4,4'-dimethoxytriphenylchloromethane
- THF tetrahydrofuran
- the Chinese name of TBTU is O-benzotriazole-N,N,N',N'-tetramethylurea tetrafluoroborate;
- the Chinese name of DBU is 1,8-diazabicycloundec-7-ene
- HOBt 1-hydroxybenzotriazole
- the Chinese name of DCC is dicyclohexylcarbodiimide
- the Chinese name of Pd-C is Palladium Carbon Catalyst
- the Chinese name is solid phase carrier, such as resin (Resin).
- 5'YICd-01-c4 2.2g (3.2mmol) was dissolved in 30mL methanol, and 1.0g of 10% Pd-C (wet Degussa type E101NE/W) was added. Then hydrogenate under normal pressure and react overnight. The reaction solution was filtered with Celite, and the filtrate was evaporated to dryness under reduced pressure to obtain 1.70 g of white foam.
- Pd-C wet Degussa type E101NE/W
- mG is the starting monomer
- the C6NH phosphoramidite monomer is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid phase phosphoramidite coupling.
- the basic steps of the solid-phase phosphoramidite method include: 1) deprotection: remove the protective group (DMT) on the oxygen atom on the solid support; 2) coupling: add the first nucleotide monomer, pass 3' Coupling reaction occurs in the 5'direction; 3) Oxidation: the resulting nucleoside phosphite is oxidized to a more stable nucleoside phosphate (ie trivalent phosphorus is oxidized to pentavalent phosphorus); 4) Blocking: the unreacted In the previous step, the nucleotide monomer 5'-OH is added and sealed so that it will no longer participate in the reaction; repeat the above steps until the desired sequence is completed.
- methylamine ethanol solution and ammonia are used to cleave the ester bond between the connecting compound and the initial nucleoside on the solid support, and each base on the oligonucleotide is combined with the protective group cyanoethyl (P ), benzoyl (mA, fA), acetyl (mC, fC), isobutyryl (mG, fG) and 4-methoxytrityl (C6NH) are removed.
- P cyanoethyl
- benzoyl mA, fA
- acetyl mC, fC
- isobutyryl mG, fG
- 4-methoxytrityl C6NH
- 3'SANCd-01-c1 (5.480g, 0.030mol) was dissolved in pyridine (30mL), cooled, DMT-CL (10.423g, 0.031mol) was added in batches, and reacted overnight in the dark, and the pyridine was removed by rotary evaporation. The residue was dissolved in CH 2 Cl 2 (50 mL), washed with saturated brine (50 mL), the organic phase was dried over anhydrous sodium sulfate, filtered, rotary evaporated, and passed through the column. Get the product 3'SANCd-01-c2 (10.805g).
- 3'SANCd-01-c2 (10.805g, 0.022mol) was dissolved in methanol (60mL) and THF (30mL), cooled, and KOH (5.69g) aqueous solution (24mL) was added dropwise, reacted at room temperature for 2h, and the methanol and THF. The residue was added with water (50 mL), extracted with EtOAc (30 mL*3), washed with saturated brine (50 mL), the organic phase was dried over anhydrous sodium sulfate, filtered, and evaporated. Pass the column with the eluent containing 1% triethylamine to obtain the product 3'SANCd-01-c3 (8.286g).
- 3'SANCd-01-c3 (2.890g, 0.007mol) was dissolved in CH 2 Cl 2 (20mL), cooled, DCC (1.680g) in CH 2 Cl 2 solution (10mL) was added dropwise, stirred for 20 minutes, and then added Diacid monomethyl ester (1.522g) in CH 2 Cl 2 solution (10 mL), react at room temperature overnight, quench with 5% NaHCO 3 (20 mL), extract with CH 2 Cl 2 (20 mL*2), saturated brine (10 mL) Washing, drying with anhydrous sodium sulfate, filtering, rotary evaporation, and passing the column with an eluent containing 1% triethylamine to obtain the product 3'SANCd-01-c4 (3.193g).
- 3'SANCd-01-c4 (2.193g, 0.004mol) was dissolved in THF (10mL), cooled, and an aqueous solution (4.5g) of LiOH (0.645g) was added dropwise. TLC showed no raw material after 2h reaction. The reaction solution was rotary evaporated to remove the solvent, the residue was neutralized with saturated ammonium chloride, extracted with CH2Cl2 (20 mL*2), and washed with saturated brine (10 mL). Drying with anhydrous sodium sulfate, filtering, rotary evaporation, and passing the column with an eluent containing 1% triethylamine to obtain the product 3'SANCd-01-c5 (1.979g).
- 3'SANCd-01-c5 (0.389g, 0.004mol), dissolved in DMF (2mL), cool, add DIPEA (0.15mL), TBTU (0.183g), stir for 10 minutes, then add dlSANC-c12 (0.756g, 0.0005mol) in DMF (2mL) solution at room temperature overnight. Quench with water (20mL), extract with CH 2 Cl 2 (20mL*2), wash with saturated brine (10mL), dry with anhydrous sodium sulfate, filter, rotary evaporate, and pass the column with eluent containing 5% triethylamine , The product 3'SANCd-01-c6 (0.803g) was obtained, and its high-resolution mass spectrum is shown in Figure 5.
- phosphoramidite monomers are introduced through solid-phase phosphoramidite coupling, mU is the starting monomer, and mU is the terminal monomer.
- the basic steps of the solid-phase phosphoramidite method include: 1) deprotection: remove the protective group (DMT) on the oxygen atom on the 3'SANCd-01 resin; 2) coupling: add the first nucleotide monomer, The coupling reaction occurs through the 3'to 5'direction; 3) Oxidation: the resulting nucleoside phosphite is oxidized to a more stable nucleoside phosphate (ie trivalent phosphorus is oxidized to pentavalent phosphorus); 4) blocked: The unreacted nucleoside monomer 5'-OH in the previous step is added and sealed so that it will no longer participate in the reaction; repeat the above steps until the desired sequence is completed.
- methylamine ethanol solution and ammonia are used to cleave the ester bond between the connecting compound and the initial nucleoside on the solid support, and each base on the oligonucleotide is combined with the protective group cyanoethyl (P ), benzoyl (mA, fA), acetyl (mC, fC) and isobutyryl (mG, fG) are removed.
- P cyanoethyl
- benzoyl mA, fA
- acetyl mC, fC
- isobutyryl mG, fG
- mG is the starting monomer, and the C6NH phosphoramidite monomer is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid phase phosphoramidite coupling. The synthesis steps are the same as in Example 1.2 solid phase synthesis.
- 3'SANCc-01 resin The synthesis route and process steps of 3'SANCc-01 resin are the same as 3'SANCd-01 resin except for the synthesis of 3'SANCc-01-c6.
- 3'SANCd-01-c5 (0.295g), dissolved in DMF (2mL), cooled, added DIPEA (0.14mL), TBTU (0.177g), stirred for 10 minutes, then added SANC-c12 (0.756g) DMF ( 2mL) solution, react overnight at room temperature. Quench with water (50mL), extract with CH 2 Cl 2 (20mL*2), wash with saturated brine (10mL), dry with anhydrous sodium sulfate, filter, rotary evaporate, and pass the column with eluent containing 5% triethylamine , Get the product 3'SANCc-01-c6 (0.815g).
- mU is the starting monomer, and mU is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid-phase phosphoramidite coupling. The synthesis steps are the same as in Example 2.2. Solid-phase synthesis of Kyas-01.
- mG is the starting monomer, and the C6NH phosphoramidite monomer is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid phase phosphoramidite coupling. The synthesis steps are the same as in Example 1.2 solid phase synthesis.
- mA is the starting monomer
- T is the terminal monomer
- different phosphoramidite monomers are introduced through solid phase phosphoramidite coupling.
- the synthesis steps are the same as in Example 2.2. Solid-phase synthesis of Kyas-01.
- mA is the starting monomer
- C6NH phosphoramidite monomer is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid-phase phosphoramidite coupling. The synthesis steps are the same as in Example 1.2 solid phase synthesis.
- mG is the starting monomer
- mU is the terminal monomer
- different phosphoramidite monomers are introduced through solid-phase phosphoramidite coupling.
- the synthesis steps are the same as in Example 2.2. Solid-phase synthesis of Kyas-01.
- mU is the starting monomer, and mU is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid-phase phosphoramidite coupling. The synthesis steps are the same as in Example 2.2. Solid-phase synthesis of Kyas-01.
- mU is the starting monomer
- C9NH phosphoramidite monomer is the terminal monomer.
- Different phosphoramidite monomers are introduced through solid phase phosphoramidite coupling.
- the synthesis steps are the same as in Example 1.2 for solid-phase synthesis of C6NH-S-01.
- Example 7 GBL0405 ⁇ GBL0408 and GBL0411 ⁇ GBL0418 refer to the synthesis of GBL-0401 ⁇ GBL0404.
- Blank control group Add DMEM medium containing 2% FBS and incubate for 72 hours.
- Test product group add test product diluents with a concentration of 5nM, 0.5nM or 0.05nM, 3 replicate wells for each concentration, and culture for 72h in a 37°C 5% CO 2 incubator.
- HepG2.2.15 cells were cultured in a 96-well cell culture plate, and the fresh medium was changed every three days. On the 6th day, the above-mentioned drug-containing medium of different concentrations was added, and the culture was continued to the 9th day. The supernatant is collected, and the detection kit detects the content of HBsAg, HBeAg and HBV DNA in the cell supernatant. The OD value was compared with the control non-administered group, and the effectiveness was determined according to the ratio.
- mice of appropriate age requiring significant HBsAg expression
- pick out 90 mice weighing about 25g and randomly divide them into 18 groups, 5 mice in each group, and give them by subcutaneous injection on Day0: 3mg/kg; administration volume is 100-200 ⁇ L.
- do mouse blood HBsAg determination try to keep the average level of HBsAg in each group consistent.
- GBL-0405 500 ⁇ g 93.3% 5 GBL-0406 500 ⁇ g 91.3% 6 GBL-0407 500 ⁇ g 88.3% 7 GBL-0408 500 ⁇ g 94.4% 8 GBL-0409 500 ⁇ g 92.3% 9 GBL-0410 500 ⁇ g 93.6% 10 GBL-0411 500 ⁇ g 90.5% 11 GBL-0412 500 ⁇ g 89.5% 12 GBL-0413 500 ⁇ g 94.8% 13 GBL-0414 500 ⁇ g 92.5% 14 GBL-0414 500 ⁇ g 90.6% 15 GBL-0415 500 ⁇ g 91.5% 16 GBL-0416 500 ⁇ g 93.4% 17 GBL-0417 500 ⁇ g 91.7% 18 GBL-0418 500 ⁇ g 92.5% 19 Normal saline 500ml/bottle 0.9%
- Example 10 Continuous study of the inhibitory effect of GBL-0401 on the expression of HBsAg in the transgenic mouse model HBV
- mice choose age-appropriate male HBV transgenic mice (requiring significant HBsAg expression) for experimental evaluation, pick out 10 mice weighing about 25g, and randomly divide them into 2 groups, 5 in each group, which are the control group and the administration group. On Day 0, 3 mg/kg was administered by subcutaneous injection; the administration volume was 100-200 ⁇ L. Before medication, blood was collected to determine HBsAg, try to keep the HBsAg level in each group consistent. Whole blood was collected from the mouse orbital venous plexus. The blood sampling time points were before administration (day 0), after administration-week 1, week 2, week 3, week 4, week 5, and week 6. Detect HBsAg to investigate the persistence of GBL-0401's inhibition of HBV gene expression.
- GBL-0401 reached the best inhibitory effect 99.08% in the first week, and the trend declined from the second to the third week, but still showed a high inhibition rate of about 90%, and the fourth to sixth week showed a downward trend. , But still maintain the inhibitory effect at about 75%.
- GBL-0401 has a continuous inhibitory effect on the expression of HBV and HBsAg, and can stably inhibit the expression for about 6 weeks.
- Figure 10 shows the effect of GBL-0401 on inhibiting HBV and HBsAg in vivo.
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Abstract
Description
名称 | 品牌 | 批号 |
DMEM高糖培养基 | Gibco | 8119164 |
胎牛血清 | Gibco | 20190907 |
PBS | Solarbio | 20190624 |
Trypsin-EDTA溶液 | Gibco | 2062475 |
双抗(青霉素/链霉素)溶液 | Gibco | 2029632 |
HBsAg、HBeAg试剂盒 | 上海科华 | 201812381 |
名称 | 品牌 | 型号 |
生物安全柜 | 海尔 | HR40-IIA2 |
二氧化碳培养箱 | ASTEC | SCA-165DS |
普通光学显微镜 | 尼康 | TS2-S-SM |
低速离心机 | 飞鸽 | KA-1000 |
多门冰箱 | 美菱 | BCD-318WTPZM(E) |
序号 | 新化合物代码 | 重量 | 纯度 |
1 | GBL-0401 | 13.8μg | 92.3% |
2 | GBL-0402 | 12.9μg | 86.4% |
3 | GBL-0403 | 13.4μg | 89.3% |
4 | GBL-0404 | 14.0μg | 93.3% |
5 | GBL-0405 | 13.7μg | 91.3% |
6 | GBL-0406 | 20.5μg | 88.3% |
7 | GBL-0407 | 20.1μg | 94.4% |
8 | GBL-0408 | 20.3μg | 92.3% |
9 | GBL-0409 | 20.4μg | 93.6% |
10 | GBL-0410 | 20.2μg | 90.5% |
11 | GBL-0411 | 20.0μg | 89.5% |
12 | GBL-0412 | 15.1μg | 94.8% |
13 | GBL-0413 | 15.2μg | 92.5% |
14 | GBL-0414 | 15.5μg | 90.6% |
15 | GBL-0415 | 15.7μg | 91.5% |
16 | GBL-0416 | 16.0μg | 93.4% |
17 | GBL-0417 | 15.9μg | 91.7% |
18 | GBL-0418 | 15.5μg | 92.5% |
序号 | 新化合物代码 | 规格 | 纯度/含量 |
1 | GBL-0401 | 500μg | 92.3% |
2 | GBL-0402 | 500μg | 86.4% |
3 | GBL-0403 | 500μg | 89.3% |
序号 | 新化合物代码 | 规格 | 纯度/含量 |
4 | GBL-0405 | 500μg | 93.3% |
5 | GBL-0406 | 500μg | 91.3% |
6 | GBL-0407 | 500μg | 88.3% |
7 | GBL-0408 | 500μg | 94.4% |
8 | GBL-0409 | 500μg | 92.3% |
9 | GBL-0410 | 500μg | 93.6% |
10 | GBL-0411 | 500μg | 90.5% |
11 | GBL-0412 | 500μg | 89.5% |
12 | GBL-0413 | 500μg | 94.8% |
13 | GBL-0414 | 500μg | 92.5% |
14 | GBL-0414 | 500μg | 90.6% |
15 | GBL-0415 | 500μg | 91.5% |
16 | GBL-0416 | 500μg | 93.4% |
17 | GBL-0417 | 500μg | 91.7% |
18 | GBL-0418 | 500μg | 92.5% |
19 | 生理盐水 | 500ml/瓶 | 0.9% |
名称 | 型号 | 厂家 |
旋涡混匀器 | MIX-28 | 大龙兴创 |
离心机 | S1010E | THERMO |
全自动化学发光分析仪 | 602 | 德国罗氏 |
序号 | 试验药物 | 给药剂量 | 小鼠数量/组 | 溶媒 | 给药途径 |
1 | 空白溶剂 | - | 5只 | 生理盐水 | 皮下注射 |
2 | GBL-0401 | 3mg/kg | 5只 | 生理盐水 | 皮下注射 |
序号 | 名称 | 规格 | 纯度/含量 |
1 | GBL-0401 | 500μg/瓶*1瓶 | 92.3% |
2 | 生理盐水 | 500ml/瓶 | 0.生9%理盐水 |
名称 | 型号 | 厂家 |
旋涡混匀器 | MIX-28 | 大龙兴创 |
离心机 | S1010E | THERMO |
全自动化学发光分析仪 | 602 | 德国罗氏 |
Claims (12)
- 一种结构中包含有抑制HBV基因表达的干扰核酸、转接点及其末端修饰链的化合物,所述末端修饰链由连接链D、接头B、支链L和肝靶向特异性配体X组成,所述末端修饰链与所述干扰核酸之间通过转接点R 1/R 2连接,其结构为通式(I)所示:其中:n为1时,m为3;n为2时,m也为2;R 1为-NH(CH 2) xCH 2-,其中x为3-10的整数;R 2为-NHCH 2CH(OH)CH 2(OH)-,或带有伯醇和仲醇的吡咯环或哌啶环;所述肝靶向特异性配体X选自半乳糖、半乳糖胺和N-乙酰半乳糖胺;所述支链L是C3-C18的直链,该直链中含有羰基、酰胺基、磷酰基、氧原子或这些基团的组合;所述接头B选自以下结构式:其中,A 1是C、O、S或NH;r1为1-15的正整数,r2为0-5的整数;A 2是C、O、S、氨基、羰基、酰胺基、磷酰基或硫代磷酰基;所述连接链D含有C5-C20,其含有氨基、羰基、酰胺基、氧原子、硫原子、硫代磷酰基、磷酰基、环状结构或这些基团的组合。
- 根据权利要求1所述的化合物,其中,所述干扰核酸包括但不限于siRNA、miRNA或Agomir。
- 根据权利要求2所述的化合物,其中,所述干扰核酸为siRNA。
- 根据权利要求3所述的化合物,其中,所述干扰核酸为抗乙肝病毒的siRNA。
- 根据权利要求4所述的化合物,其中,所述的抗乙肝病毒的siRNA正义链5’端的末端修饰链和所述的反义链3’端的末端修饰链组合选自GBL-01~GBL-16。
- 根据权利要求5所述的化合物,其中,所述筛选得到的siRNA的正义链的相对于HBV DNA的起始位点为208、210、1522、1525、1575、1576、1578、1580。
- 根据权利要求6所述的化合物,其中,所述的siRNA序列选自:1)正义链SEQ ID NO.1和反义链SEQ ID NO.2的组合序列;或2)正义链SEQ ID NO.5和反义链SEQ ID NO.6的组合序列;或3)正义链SEQ ID NO.7和反义链SEQ ID NO.8的组合序列;或4)正义链SEQ ID NO.9和反义链SEQ ID NO.10的组合序列;或5)正义链SEQ ID NO.13和反义链SEQ ID NO.14的组合序列;或6)正义链SEQ ID NO.17和反义链SEQ ID NO.18的组合序列;或7)正义链SEQ ID NO.27和反义链SEQ ID NO.28的组合序列;或8)正义链SEQ ID NO.31和反义链SEQ ID NO.32的组合序列。
- 根据权利要求1-7中任一项所述的化合物,其选自GBL-0401~GBL-0418。
- 如权利要求1-3中任一项所述的化合物在制备用于治疗肝脏相关疾病的药物中的应用,其中,所述肝脏相关疾病包括但不限于急慢肝炎、肝癌、遗传性肝源性疾病、肝硬化、脂肪肝、糖尿病。
- 如权利要求1-8中任一项所述的化合物在制备用于治疗HBV感染的相关疾病的药物中的应用,其中,所述HBV感染包括慢性乙型肝炎病毒感染、急性乙型肝炎病毒感染。
- 根据权利要求9或10所述的应用,其特征在于:所述肝靶向特异性配体X是针对肝脏中去唾液酸糖蛋白受体(ASGPR)特异性的,所述HBV感染的相关疾病包括慢性乙型肝炎,所述化合物可以持续使HBV的HBsAg、HBeAg和HBV DNA的表达得到抑制。
- 一种药物组合物,该药物组合物包含权利要求1-8中任一项所述的化合物和药学上可接受的辅料,优选剂型为皮下注射剂。
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CN114853828A (zh) * | 2021-01-20 | 2022-08-05 | 阿格纳生物制药有限公司 | 化合物、缀合物及其用途 |
CN114940991B (zh) * | 2021-04-13 | 2023-02-03 | 厦门甘宝利生物医药有限公司 | 一种抑制乙型肝炎病毒基因表达的rna抑制剂及其应用 |
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TWI750712B (zh) | 2021-12-21 |
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TW202043474A (zh) | 2020-12-01 |
AU2020305793A1 (en) | 2022-02-17 |
CN110218728A (zh) | 2019-09-10 |
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US11840691B2 (en) | 2023-12-12 |
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