WO2009053523A1 - A new biomarker for monitoring development of diseases and assessing the efficacy of therapies - Google Patents

A new biomarker for monitoring development of diseases and assessing the efficacy of therapies Download PDF

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Publication number
WO2009053523A1
WO2009053523A1 PCT/FI2008/050576 FI2008050576W WO2009053523A1 WO 2009053523 A1 WO2009053523 A1 WO 2009053523A1 FI 2008050576 W FI2008050576 W FI 2008050576W WO 2009053523 A1 WO2009053523 A1 WO 2009053523A1
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Prior art keywords
disease
sample
protein
patient
cancer
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PCT/FI2008/050576
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English (en)
French (fr)
Inventor
Sirpa Jalkanen
Marko Salmi
Markku Jalkanen
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Faron Pharmaceuticals Oy
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Faron Pharmaceuticals Oy
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Priority to EP08842581A priority Critical patent/EP2201376B1/en
Priority to KR1020167005473A priority patent/KR20160029869A/ko
Priority to US12/679,785 priority patent/US20100209942A1/en
Priority to CA2702635A priority patent/CA2702635A1/en
Priority to PL08842581T priority patent/PL2201376T3/pl
Priority to HRP20120743AT priority patent/HRP20120743T1/hr
Priority to JP2010530497A priority patent/JP4982610B2/ja
Priority to SI200830723T priority patent/SI2201376T1/sl
Application filed by Faron Pharmaceuticals Oy filed Critical Faron Pharmaceuticals Oy
Priority to ES08842581T priority patent/ES2389751T3/es
Priority to DK08842581.4T priority patent/DK2201376T3/da
Publication of WO2009053523A1 publication Critical patent/WO2009053523A1/en
Anticipated expiration legal-status Critical
Priority to US13/775,558 priority patent/US8975081B2/en
Ceased legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/575—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/5758—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumours, cancers or neoplasias, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides or metabolites
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/705—Assays involving receptors, cell surface antigens or cell surface determinants
    • G01N2333/70596—Molecules with a "CD"-designation not provided for elsewhere in G01N2333/705
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/24—Immunology or allergic disorders
    • G01N2800/245—Transplantation related diseases, e.g. graft versus host disease
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/32—Cardiovascular disorders
    • G01N2800/324—Coronary artery diseases, e.g. angina pectoris, myocardial infarction
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/56—Staging of a disease; Further complications associated with the disease

Definitions

  • This invention concerns the use of CD73 in tissue fluids as a biomarker for monitoring development of diseases or for assessing the efficacy of therapies.
  • the invention concerns also methods for determining CD73 protein in a tissue fluid.
  • CD73 is a cell-surface enzyme that has 5'-ectonucleotidase activity. It thus mediates the conversion of monophosphorylated purine nucleotides into corresponding nucleosides. For example, dephosphorylation of AMP to adenosine is catalyzed by CD73. CD73 is also present as a soluble form in the plasma and the soluble enzyme has the same enzymatic activity as the membrane bound form.
  • Adenosine is one of the physiological regulators of endothelial cell permeability [1, 2], and can thus be involved in the pathogenesis of many disorders like acute lung injury, systemic inflammatory response syndrome, respiratory distress syndrome, high-altitude sickness. Changes in endothelial permeability also take place in inflammation, in traumas and in cancer. CD73 controls endothelial permeability via an adenosine-mediated mechanism in normal conditions, hypoxia and ventilator- induced lung injury [3-7].
  • CD73 is induced by certain cytokines.
  • interferon alpha and beta have been reported to increase the expression and activity of CD73 in humans (8, WO 2004/084933, 11). These cytokines are also clinically used to treat different diseases.
  • Interferon alpha for instance is used to treat certain infections and malignancies such as hepatitis and hairy cell leukemia.
  • Interferon beta is widely used to dampen inflammation in multiple sclerosis.
  • the beneficial response to interferon treatment is only seen in a subpopulation of patients, and also the initially responding patients can later became refractory to the treatment. Thus, there is a need to develop easily measurable biomarkers that reflect the biological responsiveness of the body to the treatment.
  • the patent publication WO 2004/084933 discloses the use of cytokines for inducing endothelial CD73 expression and subsequently elevating the adenosine level in an individual.
  • the use of interferon beta in combination with adenosine monophosphate (AMP) in the treatment of multi-organ failure in rats is described.
  • patent publication WO 2007/042602 describes the use of plain interferon beta for treatment or prevention of ischemia reperfusion injury or multi-organ failure.
  • Statins hypolipidemic agents used to lower cholesterol level, are known to induce CD73 expression in the patients.
  • this invention concerns a method for monitoring the development of a disease in a patient, wherein said disease is selected from the group consisting of a) tissue trauma, b) a reperfusion injury resulting from myocardial infarction or stroke, organ transplantations or an other surgical operation, c) cancer or cancer metastasis, and d) an inflammatory condition, and wherein CD73 in a tissue fluid drawn from said patient is used as a biomarker.
  • the invention concerns a method for assessing the efficacy of a cytokine therapy or a statin therapy in a patient suffering from a disease, wherein CD73 in a tissue fluid drawn from said patient is used as a biomarker.
  • the invention concerns a method for determining of CD73 protein in a sample drawn from an individual's tissue fluid by i) quantifying the level of the CD73 protein in said sample by subjecting the sample to a binder recognizing the CD73 protein, and quantifying said binder, or by ii) detecting the activity of the CD73 protein in said sample by using thin layer chromatography or by subjecting said sample to a CD73 substrate, and monitoring the change of said substrate.
  • FIG. 1 The ischemia-reperfusion injury of the gut induces primary and secondary tissue damage.
  • the mesenteric artery was occluded for 30 min and then allowed to be reperfused for 4 h.
  • Lung CD73/5'NT activity correlates inversely with the disease activity.
  • 0073/5'NT " ' " mice and their wild-type (WT) littermates underwent sham operation (sham) or 30 minutes of intestinal ischemia followed by 240 minutes of reperfusion (ALI). In additional groups, animals exposed to ALI were pretreated with IFN- ⁇ .
  • Lung CD73/5'NT activity (mean ⁇ SEM, nmol of AMP hydrolyzed by milligram of protein per hour) measured from tissue lysates by TLC.
  • FIG. 3 CD73/5'NT activity in SIRS patients suffering from pancreatitis.
  • patient or “individual” refers to a human or to an animal subject.
  • the term "monitoring the development of a disease” means that the progression of the disease (i.e. worsening of the disease) or the regression of the disease (i.e. a patient's recovery) can be made by comparing a measured level of the biomarker to a control or to one or more previous measurements, carried out at different points of time, of the level of the biomarker in the same patient. For example, a decreased level of the biomarker, compared to the result from a previous measurement or to a control may be used to indicate the progression of the disease, while an increased level of the biomarker, compared to the result from a previous measurement or to a control is used to indicate the regression of the disease. However, there are likely certain diseases affecting the level of the biomarker in the opposite way.
  • tissue fluid shall be understood to include any fluid which bathes and surrounds the cells.
  • the term includes, for example, blood plasma, serum, lympha, urine, exudates (pleural, peritoneal) and cerebrospinal fluid.
  • inflammatory condition is meant to include any harmful and undesired inflammatory response in a tissue in an individual, wherein said inflammatory condition may result from an acute condition such as tissue trauma, a reperfusion injury resulting from myocardial infarction or stroke, organ transplantations or an other surgical operation, or from a chronic condition including allergic conditions, autoimmune diseases, and inflammatory diseases.
  • tissue fluid typically selected from the group consisting of a) tissue trauma, b) a reperfusion injury resulting from myocardial infarction or stroke, organ transplantations or an other surgical operation, c) cancer or cancer metastasis, and d) an inflammatory condition.
  • Typical diseases leading to a change in the patient's CD73 level in tissue fluids, especially in serum are: tissue trauma; reperfusion injuries resulting from myocardial infarction or stroke, organ transplantations or other surgical operations; cancer or cancer metastasis; or inflammatory conditions resulting from the aforesaid traumas or reperfusion injuries or from chronic conditions including allergic conditions, autoimmune diseases, and inflammatory diseases.
  • chronic conditions can be mentioned arthritis, allergic conditions such as asthma, inflammatory conditions such as inflammatory bowel disease or an inflammatory condition of the skin, psoriasis, Parkinson's disease, Alzheimer's disease, autoimmune diseases, type I or type II diabetes, atherosclerosis, multiple sclerosis, Crohn's disease, or rejection reactions due to organ transplantations.
  • the inflammatory diseases systemic inflammatory response syndrome (SIRS), acute lung injury (ALI), multi-organ failure (MOF), ischemia reperfusion injury (IRI) and adverse drug reaction (ADRS) will lead to alterations of tissue fluid CD73 protein.
  • cytokine includes any protein or peptide used in organisms as signalling compounds.
  • this term refers to an interferon or an interleukin, but is not restricted thereto.
  • the interferon may be alpha-, beta-, gamma-, omega-, or any other interferon and it can be any subtype of the aforementioned interferons.
  • Interferons are used in the treatment of the aforementioned diseases.
  • interleukins can be mentioned IL-4, IL- 10, IL-13 and IL-20 .
  • Statins form a class of hypolipidemic agents used to lower cholesterol levels in individuals, particularly to reduce the risk of cardiovascular diseases. Also inflammatory conditions, dementia, cancer, nuclear cataract and pulmonary hypertension may respond to treatment with statins.
  • Determining of CD73 protein in a sample drawn from an individual's tissue fluid can be carried out by an immunodetection by quantifying the level of the CD73 protein in said sample by subjecting the sample to a binder recognizing the CD73 protein, and quantifying said binder.
  • the detection can be carried out by detecting the activity of the CD73 protein in said sample by using thin layer chromatography or by subjecting said sample to a CD73 substrate, and monitoring the change of said substrate.
  • binding shall be understood to include antibodies, which can be monoclonal or polyclonal or genetically engineered; any antibody fragments; aptamers and affibodies, and any other binder capable of binding to an epitope on the CD73 protein.
  • CD73 antibodies are well known in the art, see for example http://www.biocompare.eom/matrixsc/3194/6/67151/CD73.html.
  • Affibodies represent a new kind of binders, small and especially stabile proteins, developed by Affibody Ab.
  • the binding assay can be competitive or non-competitive.
  • One preferable assay is a sandwhich assay where a capture antibody (or other kind of binder) immobilized to a solid support, is subjected to the sample comprising the antigen, which at a first epitope binds to the capture antibody and adding a labeled antibody (or other kind of binder), directed to another epitope of the antigen.
  • the labeled antibody is quantified either directly (homogeneous assay) or after separation of non- immobilized labeled antibodies.
  • the label can be a radioactive isotope, a fluorescent dye, an enzyme or any other detectable label.
  • any suitable anti-CD73 specific antibody can be used to capture soluble CD73 from the sample, and then the amount of bound protein can be quantified using a variety of techniques.
  • a sandwhich ELISA can be employed in which one anti-CD73 antibody is immobilized to the bottom of multiwell plates, the sample is added, and the bound CD73 is detected using another anti-CD73 antibody.
  • the anti-CD73 antibody is then detected using any of the multiple techniques suitable for antibody detection, such as labeled second-stage antibodies.
  • the CD73 specificity of the reaction is controlled by including an irrelevant antibody as a capture or detection antibody and comparing the signals between these negative controls and anti-CD73 antibodies.
  • CD73 activity can be measured using thin layer chromatography according to published protocols.
  • CD73 activity can be also measured using any enzymatic assay that measures the conversion of AMP, or another purine mononucleotide that can be used as a CD73 substrate, into the corresponding nucleoside.
  • the assay can be based on conversion of radioactively or fluorescently labeled substrates. Detection methods can rely on the quantification of the decrease in a substrate concentration, or an increase in the product concentration or the release of the phosphate group.
  • the CD73 dependence of the reaction can be determined by performing the assay in the presence and absence of a known CD73 inhibitor, such as AMPCP.
  • Suitable substrates for CD73 are, for example nucleoside-5'-monophosphates including adenosine-5'-monophosphate (AMP), inosine-5'-monophosphate (IMP), and the like.
  • AMP adenosine-5'-monophosphate
  • IMP inosine-5'-monophosphate
  • CD73 ⁇ mice which were backcrossed to C57BL/6 background for 8 generations, and C57BL/6 wild-type (WT) mice were used. They lack CD73 mRNA, protein and enzyme activity [3].
  • the animals were weight-, sex- and age-matched. All mice had access to standard mouse chow and water until the experiment. Mice were anesthesized with ketamine hydrochloride (100 mg/kg of body weight, i.p.) and xylazine (10 mg/kg of body weight, Lp.). During the anesthesia the mice spontaneously ventilated normal air. Before surgery animals received 1 ml of sterile saline subcutaneously to compensate for peroperative fluid loss.
  • Superior mesenteric artery was dissected via midline laparotomy and occluded by microvascular clamp for 30 minutes. Sham animals underwent superior mesenteric artery dissection without vascular occlusion. The wound was sutured in one layer. The body temperature of the animals was maintained throughout the ischemia phase with a heating lamp. After the ischemia, the microvascular clamp was released, the wound sutured and animals received additional 1 ml of saline subcutaneously. After 235 minutes of reperfusion mice received FITC -conjugated dextran (25 mg/kg body weight in 0.2 ml sterile saline; mw. 70 000 D, Molecular Probes).
  • mice were sacrificed after 240 minutes of reperfusion and the tissue samples were collected.
  • the 30 min ischemia-240 min reperfusion protocol is an established and reproducible ALI model [9]. The protocol was approved by the Committee on Animal Ethics of Turku University (permission n:o 1597/05 to Sirpa Jalkanen).
  • mice were pretreated with recombinant mouse IFN- ⁇ (6000 IU s.c. once daily for 3 days prior to ischemia).
  • IFN- ⁇ 6000 IU s.c. once daily for 3 days prior to ischemia.
  • post- treatment group the animals got a single bolus of IFN- ⁇ (20 000 IU) intravenously after the ischemic phase at the beginning of the reperfusion period.
  • mice All mice were injected i.v. with FITC-conjugated dextran (70 kDa) 5 minutes before euthanasia.
  • Vascular leakage was determined from three color images taken from randomly chosen fields from cryosectioned lungs using computational image analysis (Image J).
  • Ecto-5 '-nucleotidase activity was assayed by TLC, as described previously [10]. Briefly, the standard enzyme assay contained in a final volume of 120 ⁇ l of RPMI 1640, lung lysate, 5 mmol/L ⁇ -glycerophosphate, and the indicated concentrations of AMP with tracer [2- 3 H]AMP (sp. act, 18.6 Ci/mmol; Amersham, Little Chalfont, U.K.). Incubation times were chosen to ensure the linearity of the reaction with time, so that the amount of the converted AMP did not exceed 7-10% of the initially introduced substrate.
  • CD73 activity correlates with the disease activity
  • CD73 activity was undetectable or at extremely low levels in CD73 deficient mice both after sham operation and after intestinal IR.
  • CD73 deficient mice the leakage in sham-operated animals was mildly increased when compared to the wild-type sham operated mice.
  • IFN- ⁇ treatment could reverse an already established capillary injury.
  • mice treated the mice with IFN- ⁇ only after the ischemic period at the time of reperfusion.
  • the single IFN- ⁇ dose highly significantly improved vascular barrier function during the following 4 h reperfusion period.
  • the induction of CD73 activity correlates positively with a treatment response.
  • measuring CD73 activity in a blood sample can yield useful information about the IFN- ⁇ responsiveness.

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PCT/FI2008/050576 2007-10-24 2008-10-15 A new biomarker for monitoring development of diseases and assessing the efficacy of therapies Ceased WO2009053523A1 (en)

Priority Applications (11)

Application Number Priority Date Filing Date Title
JP2010530497A JP4982610B2 (ja) 2007-10-24 2008-10-15 疾患の進展をモニターするための、および治療法の有効性を評価するための新規なバイオマーカー
US12/679,785 US20100209942A1 (en) 2007-10-24 2008-10-15 New biomarker for monitoring development of diseases and assessing the efficacy of therapies
CA2702635A CA2702635A1 (en) 2007-10-24 2008-10-15 A new biomarker for monitoring development of diseases and assessing the efficacy of therapies
PL08842581T PL2201376T3 (pl) 2007-10-24 2008-10-15 Nowy biomarker do monitorowania rozwoju chorób i do oceny skuteczności leczenia
HRP20120743AT HRP20120743T1 (hr) 2007-10-24 2008-10-15 Novi biomarker za nadzor razvoja bolesti i procjenu uäśinkovitosti lijeäśenja
EP08842581A EP2201376B1 (en) 2007-10-24 2008-10-15 A new biomarker for monitoring development of diseases and assessing the efficacy of therapies
DK08842581.4T DK2201376T3 (da) 2007-10-24 2008-10-15 En ny biomarkør til overvågning af udviklingen af sygdomme og vurdering af effektiviteten af terapier
SI200830723T SI2201376T1 (sl) 2007-10-24 2008-10-15 Nov biomarker za monitoring razvoja bolezni in določanje učinkovitosti terapij
ES08842581T ES2389751T3 (es) 2007-10-24 2008-10-15 Un nuevo biomarcador para monitorizar el desarrollo de enfermedades y evaluar la eficacia de terapias
KR1020167005473A KR20160029869A (ko) 2007-10-24 2008-10-15 질병의 발달을 모니터링하고 치료의 효율을 평가하기 위한 새로운 바이오마커
US13/775,558 US8975081B2 (en) 2007-10-24 2013-02-25 Biomarker for monitoring development of diseases and assessing the efficacy of therapies

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FI20070795 2007-10-24
FI20070795A FI20070795A0 (fi) 2007-10-24 2007-10-24 Uusi biomarkkeri sairauksien kehittämisen tarkkailuun ja terapioiden tehon arviointiin

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US12/679,785 A-371-Of-International US20100209942A1 (en) 2007-10-24 2008-10-15 New biomarker for monitoring development of diseases and assessing the efficacy of therapies
US13/775,558 Continuation-In-Part US8975081B2 (en) 2007-10-24 2013-02-25 Biomarker for monitoring development of diseases and assessing the efficacy of therapies

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EP (2) EP2201376B1 (https=)
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KR (2) KR20100059902A (https=)
CA (1) CA2702635A1 (https=)
CY (2) CY1113403T1 (https=)
DK (2) DK2201376T3 (https=)
ES (2) ES2532361T3 (https=)
FI (1) FI20070795A0 (https=)
HR (2) HRP20120743T1 (https=)
PL (2) PL2201376T3 (https=)
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WO2013188828A1 (en) 2012-06-15 2013-12-19 Harry Stylli Methods of detecting diseases or conditions using circulating diseased cells
WO2013188846A1 (en) 2012-06-15 2013-12-19 Harry Stylli Methods of detecting diseases or conditions
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US10934589B2 (en) 2008-01-18 2021-03-02 President And Fellows Of Harvard College Methods of detecting signatures of disease or conditions in bodily fluids
US10961578B2 (en) 2010-07-23 2021-03-30 President And Fellows Of Harvard College Methods of detecting prenatal or pregnancy-related diseases or conditions
US11111537B2 (en) 2010-07-23 2021-09-07 President And Fellows Of Harvard College Methods of detecting autoimmune or immune-related diseases or conditions
US11585814B2 (en) 2013-03-09 2023-02-21 Immunis.Ai, Inc. Methods of detecting prostate cancer
EP4303584A2 (en) 2010-07-23 2024-01-10 President and Fellows of Harvard College Methods for detecting signatures of disease or conditions in bodily fluids

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