US6999166B2 - Component, apparatus, and method for analyzing molecules - Google Patents

Component, apparatus, and method for analyzing molecules Download PDF

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Publication number
US6999166B2
US6999166B2 US10/614,723 US61472303A US6999166B2 US 6999166 B2 US6999166 B2 US 6999166B2 US 61472303 A US61472303 A US 61472303A US 6999166 B2 US6999166 B2 US 6999166B2
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Prior art keywords
lens array
lens
substrate
reflecting plate
array
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US20040080746A1 (en
Inventor
Tomohiko Matsushita
Takeo Nishikawa
Shigeru Aoyama
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Omron Corp
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Omron Corp
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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6452—Individual samples arranged in a regular 2D-array, e.g. multiwell plates
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/34—Microscope slides, e.g. mounting specimens on microscope slides
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B3/00—Simple or compound lenses
    • G02B3/0006—Arrays
    • G02B3/0037—Arrays characterized by the distribution or form of lenses
    • G02B3/0062—Stacked lens arrays, i.e. refractive surfaces arranged in at least two planes, without structurally separate optical elements in-between
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B3/00—Simple or compound lenses
    • G02B3/0006—Arrays
    • G02B3/0037—Arrays characterized by the distribution or form of lenses
    • G02B3/0062—Stacked lens arrays, i.e. refractive surfaces arranged in at least two planes, without structurally separate optical elements in-between
    • G02B3/0068—Stacked lens arrays, i.e. refractive surfaces arranged in at least two planes, without structurally separate optical elements in-between arranged in a single integral body or plate, e.g. laminates or hybrid structures with other optical elements
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B5/00—Optical elements other than lenses
    • G02B5/12—Reflex reflectors
    • G02B5/122—Reflex reflectors cube corner, trihedral or triple reflector type
    • G02B5/124—Reflex reflectors cube corner, trihedral or triple reflector type plural reflecting elements forming part of a unitary plate or sheet
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B5/00—Optical elements other than lenses
    • G02B5/12—Reflex reflectors
    • G02B5/126—Reflex reflectors including curved refracting surface
    • G02B5/13—Reflex reflectors including curved refracting surface plural curved refracting elements forming part of a unitary body
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
    • B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N2021/6463—Optics
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N2021/6463—Optics
    • G01N2021/6478—Special lenses

Definitions

  • This invention relates to a component, an apparatus, and a method for analyzing molecules, and more particularly to a component, an apparatus, and a method for detecting emission signals from target molecules.
  • a method for detecting chemical interactions between two materials has been conventionally used representatively to determine whether DNA hybridization has occurred.
  • a plurality of probe molecules are provided on a substrate for possible reactions with sample molecules carrying binding partners.
  • the sample molecules are fluorescently or electrochemically labeled. It is possible to estimate presence or degree of interactions between each probe molecule and each sample molecule by detecting emission signals from labeled molecules.
  • the substrate including those target molecules may be referred to as a chip or an array.
  • FIG. 6 there is shown a light detecting apparatus 37 employed in such a conventional method.
  • the apparatus 37 includes a substrate 49 on which a plurality of samples 38 are arranged, an object lens 42 , a beam splitter 43 , a mirror 44 , an emission filter 45 , a light receiving lens 46 , a focus pinhole 47 , and a light receiver 48 .
  • Excitation beams 40 projected by an excitation beam generator (not shown) are reflected by the beam splitter 43 and directed to a sample 38 .
  • the sample 38 excited by the beam emits emission signals 41 .
  • Emission signals 41 are received by the object lens 42 which is disposed over the sample 38 , passed through the beam splitter 43 , lead to the emission filter 45 by way of the mirror 44 , gathered by the light receiving lens 46 , eliminated of noise signals by the focus pinhole 47 , and detected by the light receiver 48 .
  • the excitation beam 40 is not applied, but emission signals 41 are emitted from the sample 38 and received by the light receiver 48 in the same way.
  • the emission signal 41 emitted from the sample 38 is weak. Furthermore, according to the conventional apparatus 37 , the amount of the emission signals that can be detected depends on a numerical aperture (NA) of the object lens 42 , which means that only emission signals that emitted within the area of the object lens 42 can be detected. Therefore, most of the amount of the emission signals 41 is not detected, and the efficiency of detecting signals is not desirable.
  • NA numerical aperture
  • a component for analyzing molecules which includes a transparent substrate having a plurality of pixel locations on a first surface thereof, each location including at least one target molecule, a reflecting plate arranged to face an opposite side of the first surface of the substrate, and a. micro lens array interposed between the substrate and the reflecting plate, which includes a first lens array next to the substrate, a second lens array next to the reflecting plate, and a medium layer interposed between the first and second lens arrays, wherein each lens of the second lens array has its focus on each opposing lens of the first lens array, and the first lens array and the second lens array focus into an image of each of the target molecules on the reflecting plate.
  • a component for analyzing molecules that includes a transparent substrate having a plurality of pixel locations on a first surface thereof, each location including at least one target molecule, and a corner cube array arranged to face an opposite side of the first surface of the substrate, and designed to reflect an incoming ray of light exactly in the same direction as It entered the corner cube array.
  • a method for analyzing molecules that includes steps of applying an excitation beam generated by an excitation beam generator to at least one target molecule arranged on a transparent substrate, controlling optical paths of emission signals emitted from the excited at least one target molecule by a micro lens array or a corner cube array, detecting the emission signals, and analyzing one or more values of detected emission signals.
  • FIG. 1 is a simplified, sectional view of a light detecting apparatus according to a first embodiment of this invention
  • FIG. 2A is a simplified partial sectional view showing a configuration of a component employed in the apparatus of FIG. 1 ;
  • FIG. 2B is a simplified partial sectional view showing a configuration of another component employed in the apparatus of FIG. 1 ;
  • FIG. 3 is a simplified partial sectional view of a component employed in the apparatus of FIG. 1 ;
  • FIG. 4 is a simplified sectional view of a light detecting apparatus according to a second embodiment of this invention.
  • FIG. 5 is a simplified partial sectional view of a light detecting apparatus according to a third embodiment of this invention.
  • FIG. 6 is a simplified sectional view of a conventional light detecting apparatus.
  • FIG. 1 shows a simplified sectional view of a light detecting apparatus according to a first embodiment of this invention.
  • a light detecting apparatus 1 includes a light detecting system 22 and a component 2 disposed under the light detecting system 22 .
  • the light detecting system 22 includes an object lens 12 , a beam splitter 13 , a mirror 14 , an emission filter 15 , a light receiving lens 16 , a focus pinhole 17 , and a light receiver 18 .
  • the component 2 includes a main substrate 19 having a plurality of samples 3 arranged on a first surface thereof, a first substrate 4 , a micro lens array 21 , a second substrate 8 , and a reflecting plate, arranged in the order shown in FIG. 1 .
  • the micro lens array 21 includes a first lens array 5 next to the main substrate 19 , a second lens array 7 next to the reflecting plate 9 , and a. medium layer 6 interposed between the first array 5 and the second lens array 7 , wherein each lens of the second lens array 7 has its focus on each opposing lens of the first lens array 5 , and the first lens array 5 and the second lens array 7 focus into an image of each of the samples 3 on the reflecting plate 9 .
  • the samples 3 may be disposed directly on the first substrate 4 or the first lens array 5 without using the main substrate 19 .
  • emission signals emitted from the sample in the direction of the micro lens array can be controlled by the functions of the micro lens array and the reflecting plate so as to return to the point where the signal was emitted.
  • the medium layer 6 can be made of any material that is light permeable such as light permeable resin.
  • the medium layer 6 integrates the first lens array 5 and the second lens array 7 . Integrating the first lens array 5 and the second lens array 7 makes handling easier and keeps both lens arrays in position even if time passes.
  • the medium layer 6 also can be made of gas.
  • the first lens array 5 and the second lens array 7 may be integrated at the ends of the micro lens array 21 where lenses are not formed.
  • the difference of the reflective indexes between the both lens arrays and the medium layer is great, and the NA of the lens is large. Therefore, the amount of emission signals that can be captured by the lens increases and the light detecting efficiency is improved.
  • the main substrate 19 , the first substrate 4 , the micro lens array 21 , and the second substrate 8 are made of transparent material that permeates emission signals.
  • Excitation beams 10 projected by an excitation beam generator are reflected by the beam splitter 13 and directed to samples 3 .
  • a fluorescently labeled sample excited by the beam emits emission signals 11 .
  • Emission signals 11 a emitted in the direction of an object lens 12 are received by the object lens 12 within the limits of the NA of the lens.
  • emission signals 11 b emitted in the direction of the micro lens array 21 are received by the first lens array 5 , refracted at one boundary between the first lens array 5 and the medium layer 6 and another boundary between the medium layer 6 and the second lens array 7 , and reflected by the reflecting plate 9 .
  • Total emission signals 11 captured by the object lens 12 are passed through the beam splitter 13 , lead to the emission filter 15 by way of the mirror 14 , gathered by the light receiving lens 16 , eliminated of noise signals by the focus pinhole 17 , and detected by the light receiver 18 .
  • An excitation beam 10 that passes through the sample 3 is also received and refracted by the micro lens array 21 and reaches the reflecting plate 9 . If the excitation beam 10 is reflected by the reflecting plate 9 and captured by the object lens 12 , it would be a “noise.” However, if a reflecting plate that can permeate or absorb light having a predetermined wavelength, such as a band-pass filter, is employed, the excitation beam 10 is not reflected by the reflecting plate 9 . With the use of a specific type of reflecting plate 9 like this, only the emission signals emitted, from the sample can be reflected by the reflecting plate 9 , and detection of the signals is made with high efficiency.
  • the refractive index of the first lens array 5 is n 1
  • the refractive index of the medium layer 6 is n 2
  • the refractive index of the second lens array 7 is n 3
  • the relationships of the refractive indexes are n 1 ⁇ n 2 and n 3 ⁇ n 2 .
  • the medium layer 6 can be made of gas or resin. If some resin is used as a medium layer 6 , the coefficient of thermal expansion of that resin may be almost the same as those of the first lens array and the second lens array. This improves tolerance to the surroundings and decreases deterioration of micro lens array as time passes.
  • each of the lens arrays is concavely curved against the outer surface of the component (not shown in any drawings)
  • the relationships of the refractive indexes are n 1 >n 2 and n 3 >n 2 .
  • the relationships of the refractive indexes are n 1 ⁇ n 2 ⁇ n 3 , and vice versa.
  • FIG. 1 is a schematic view, and is drawn irrespective of the difference between the refractive index of each component.
  • FIGS. 2A and 2B there are shown simplified partial sectional views representing a configuration of a component employed in the apparatus of FIG. 1 . These figures show the optical path of emission signals 11 b ) emitted from the sample 13 in the direction of the micro lens array.
  • the first substrate 4 , the second substrate 8 etc. are not drawn for convenience of explanation.
  • Each lens 5 a of the first lens array 5 and each lens 7 a of the second lens array 7 are arranged so that each lens 7 a has its focus on the surface (i.e. the boundary between the first lens array 5 and the medium layer 6 ) of each opposing lens 5 a.
  • each lens 7 a has its focus at the middle of the surface of each opposing lens 5 a. Therefore, among emission signals 11 b emitted from the fluorescent molecules 20 a, 20 b, and 20 c, emission signals 11 p that pass a point P (i.e., a focus of the lens 7 a ) on the surface of the lens 5 a are refracted by the micro lens array to be parallel with each other, and reach the reflecting plate 9 at points A, B, and C. Each emission signal 11 p reflected by the reflecting plate 9 travels back to the positions of the fluorescent molecules 20 a, 20 b, and 20 c by way of the point P, and is emitted from those positions in the direction of the object lens.
  • the configurations and the refractive indexes of the lens 5 a, the lens 7 a, and the medium layer 7 are determined so that an image of fluorescent molecules 20 is formed on the reflecting plate 9 . Therefore, among emission signals 11 b emitted from the fluorescent molecules 20 a, 20 b, and 20 c, emission signals that do not pass a point P are also refracted by the first lens array 5 and the second lens array 7 , and reach the reflecting plate 9 at points A, B, and C.
  • emission signals 11 b received by the first lens array 5 within the limits of the NA reach the reflecting plate 9 at points A, B, and C with substantially symmetrical incident angles. Therefore, almost all of the emission signals 11 b reflected by the reflecting plate 9 return to the positions of the fluorescent molecules 20 a, 20 b, and 20 c, and are emitted from those positions in the direction of the object lens.
  • the point P is not necessarily at the middle of the surface of the lens 5 a, and emission signals 11 b return to the positions of the fluorescent molecules 20 a, 20 b, and 20 c, by following almost the same paths as long as the point P is provided on the surface of the lens 5 a.
  • emission signals 11 b emitted from the fluorescent molecules 20 a, 20 b, and 20 c in the direction of the micro lens array 21 are returned to the positions of the fluorescent molecules 20 a, 20 b, and 20 c by the functions of the micro lens array 21 and the reflecting plate 9 , emitted from those positions as if they were originally emitted from the fluorescent molecules 20 a, 20 b, and 20 c in the direction of the object lens 12 , and detected by the light detecting system 22 .
  • the reflecting plate 9 may have a flat surface as shown, in FIG. 2A or a curved, surface as shown in FIG. 2B .
  • An aberration of the micro lens array fails to focus into an image of each fluorescent molecule 20 a, 20 b, and 20 c on the same plane.
  • the reflecting plate 9 has a curved surface, however, the aberration of the micro lens array 21 is counteracted. Therefore, reflected signals are precisely returned to the positions of the fluorescent molecules 20 a, 20 b, and 20 c.
  • the curved surface of the reflecting plate 9 makes reflecting angles at points A, B, and C on the reflecting plate 9 smaller, so that reflected signals are efficiently returned to the original positions even if the reflected signals are emitted from a fluorescent molecule placed near the side of the sample 3 .
  • the micro lens array 21 may also be composed of more than three lens arrays. With the use of more than three lens arrays, an aberration of the micro lens array can be counteracted, and optical characteristics of the micro lens array improve.
  • FIG. 3 shows a simplified partial sectional view of a component employed in the apparatus of FIG. 1 .
  • a spacer 26 may be used between the first lens array 5 and the second lens array 7 at the ends of the lens arrays where lenses are not formed. The spacer 26 makes it easier to adjust the disposition of the lens arrays.
  • FIG. 4 shows a simplified sectional view of a light detecting apparatus 27 according to a second embodiment of this invention.
  • the light detecting apparatus 27 includes a light detecting system 22 and a component 30 .
  • the light detecting system 22 is the same as one described in FIG. 1 , and is not explained again here.
  • the component 30 includes a transparent substrate 29 having a plurality of samples 3 on a first surface thereof and a corner cube array 31 arranged to face an opposite side of the first surface of the substrate and designed to reflect an emission signal 11 emitted from a sample 3 in the same direction as it entered the corner cube array 31 .
  • a prism that reflects an incoming ray of light exactly in the same direction as it entered the prism is referred to as a corner cube array.
  • a corner cube array may be provided with a band-pass filter 28 .
  • Excitation beams 10 projected by an excitation beam generator are reflected by the beam splitter 13 and directed to samples 3 .
  • a fluorescently labeled sample 3 excited by the beam emits emission signals 11 .
  • Emission signals 11 a emitted in the direction of the object lens 12 are received by the object lens 12 within the limits of the NA.
  • emission signals 11 b emitted in the direction of the corner cube array 31 are reflected on the several reflecting surfaces of the corner cube array 31 , returned to the position of the sample 3 , and received by the object lens 12 .
  • the emission signals 11 a and 11 b received by the object lens 12 are passed through the beam splitter 13 , lead to the emission filter 15 by way of the mirror 14 , gathered by the light receiving lens 16 , eliminated of noise signal by the focus pinhole 17 , and detected by the light receiver 18 .
  • An excitation beam 10 that passed through the sample also reaches the corner cube array 31 . If the excitation beam 10 is reflected by the corner cube array 31 and captured by the object lens 12 , it would be a “noise.” However, if reflecting plate that can permeate or adsorb light having a predetermined wavelength, such as a band-pass filter 28 , is provided with the corner cube array 31 , the excitation beam 10 is not reflected by the corner cube array 31 . Therefore, only emission signals emitted from the sample can be reflected by the corner cube array 31 , and light detection is made with high efficiency.
  • a predetermined wavelength such as a band-pass filter 28
  • emission signals 11 b emitted from a fluorescent molecule in the direction of the corner cube array 31 are returned to the position of the fluorescent molecule by the function of the corner cube array 31 , emitted from that position as if they were originally emitted from the fluorescent molecule in the direction of the object lens 12 , and detected by the light receiver 18 .
  • the corner cube array 31 is designed such that the width of each prism of the corner cube array 31 is narrower than the width of each sample 3 , whereby emission signals emitted from the sample 3 in the direction of the corner cube array 31 are returned to the position of the sample 3 efficiently.
  • the incident angle ⁇ with which the emission signal 11 e emitted from the sample 3 into the reflecting surface of the corner cube array 31 is maximally sin ⁇ 1 (n b /n a ), that is critical angle where n a is the refractive index of the substrate 29 and n b is the refractive index of the sample 3 .
  • the extremity of area A is apart from the extremity of area B by at least d ⁇ tan ⁇ , so that emission signals emitted from a sample disposed near the end of the substrate can be successfully reflected.
  • n a is 1.5, for example, ⁇ would be maximally 42°. Therefore, the extremity of the area A should be apart from one of the area B by at least d.
  • emission signals emitted in the opposite direction of the object lens are detected as well as emission signals emitted in the direction of the object lens. Therefore, weak signals can be detected efficiently.
  • the light detecting system 22 is explained when a photo-multiplier is used as a light receiver 18 .
  • a CCD camera 23 can be substituted for the light detecting system 22 .
  • the micro lens array in FIG. 5 may be replaced by a corner cube array.
  • the CCD camera can read a plurality of emission signals at one time, and there is no need for scanning the substrate.
  • the apparatus and the method according to embodiments of the invention are particularly useful in determining DNA hybridization but may be useful in detecting interactions in any chemical assay.
  • Other applications of embodiments of the method include analysis of single nucleotide polymorphism (SNP), measurement of the concentration of an ion in a cell, identification of a protein, analysis of a function of a protein, and analysis of the process or the state of metabolism, absorption, and excretion of a material dosed in an experimental mouse.
  • embodiments of the method can be applied to medical check for health care or individual certification for security system.

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  • Physics & Mathematics (AREA)
  • General Physics & Mathematics (AREA)
  • Optics & Photonics (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Immunology (AREA)
  • Pathology (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
  • Photometry And Measurement Of Optical Pulse Characteristics (AREA)
US10/614,723 2002-07-08 2003-07-07 Component, apparatus, and method for analyzing molecules Expired - Fee Related US6999166B2 (en)

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JP2002199088A JP3747890B2 (ja) 2002-07-08 2002-07-08 光学部品ならびに当該光学部品を用いた光検出装置、光検出方法および分析方法
JP199088/2002 2002-07-08

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US20110122402A1 (en) * 2008-04-11 2011-05-26 Peter Westphal Device and Method for Measuring Luminescence
RU2443983C1 (ru) * 2010-09-21 2012-02-27 Закрытое акционерное общество "МИТРЕЛЬ-Ф-ФЛУОРО" Способ дистанционной идентификации объекта, флуоресцентно-световозвращающее устройство и оптический ридер для реализации способа

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