RU2612789C2 - Способ детектирования и характеризации токсиногенного штамма clostridium difficile - Google Patents
Способ детектирования и характеризации токсиногенного штамма clostridium difficile Download PDFInfo
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- RU2612789C2 RU2612789C2 RU2011144853A RU2011144853A RU2612789C2 RU 2612789 C2 RU2612789 C2 RU 2612789C2 RU 2011144853 A RU2011144853 A RU 2011144853A RU 2011144853 A RU2011144853 A RU 2011144853A RU 2612789 C2 RU2612789 C2 RU 2612789C2
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- C—CHEMISTRY; METALLURGY
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/04—Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/143—Multiplexing, i.e. use of multiple primers or probes in a single reaction, usually for simultaneously analyse of multiple analysis
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
- C12R2001/145—Clostridium
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Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP09157547.2 | 2009-04-07 | ||
| EP09157547 | 2009-04-07 | ||
| PCT/IB2010/051396 WO2010116290A1 (en) | 2009-04-07 | 2010-03-31 | Method for the detection and characterization of a toxinogenic clostridium difficile strain |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| RU2011144853A RU2011144853A (ru) | 2013-05-20 |
| RU2612789C2 true RU2612789C2 (ru) | 2017-03-13 |
Family
ID=42224104
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| RU2011144853A RU2612789C2 (ru) | 2009-04-04 | 2010-03-31 | Способ детектирования и характеризации токсиногенного штамма clostridium difficile |
Country Status (8)
| Country | Link |
|---|---|
| US (2) | US20120028819A1 (enExample) |
| EP (1) | EP2419527B1 (enExample) |
| JP (1) | JP5859424B2 (enExample) |
| KR (1) | KR101798211B1 (enExample) |
| CN (1) | CN102378817B (enExample) |
| BR (1) | BRPI1006757A2 (enExample) |
| RU (1) | RU2612789C2 (enExample) |
| WO (1) | WO2010116290A1 (enExample) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2841390C1 (ru) * | 2024-11-27 | 2025-06-06 | Федеральное государственное бюджетное образовательное учреждение высшего образования "Санкт-Петербургский государственный аграрный университет" (ФГБОУ ВО СПбГАУ) | Способ оценки генов токсинов Clostridium perfringens и Clostridioides difficile в консервированных объемистых кормах для крупного рогатого скота |
Families Citing this family (15)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2419527B1 (en) | 2009-04-07 | 2013-06-26 | Koninklijke Philips Electronics N.V. | Method for the detection and characterization of a toxinogenic clostridium difficile strain |
| WO2012087135A1 (en) | 2010-12-22 | 2012-06-28 | Academisch Ziekenhuis Leiden H.O.D.N. Lumc | Genetic markers specific for clostridium difficile ribotypes 027 (nap01/b1; rt 027) and 078 (nap7/8; rt 078) and their use |
| GB201110712D0 (en) | 2011-06-23 | 2011-08-10 | Univ Ulster | Diagnostic methods |
| MX345557B (es) | 2011-07-06 | 2017-02-02 | Quest Diagnostics Invest Inc | Amplificacion y deteccion directa de patogenos virales y bacteriales. |
| GB201207998D0 (en) * | 2012-05-08 | 2012-06-20 | Univ Cardiff | A screening method for the detection of clostridium difficle |
| US9133527B2 (en) * | 2012-05-11 | 2015-09-15 | Techlab, Inc. | Cell wall protein CwpV (CD0514) as a diagnostic marker for Clostridium difficile ribotype 027 |
| KR101955329B1 (ko) | 2012-06-08 | 2019-03-07 | 삼성전자주식회사 | 클로스트리디움 디피실리 균주 검출용 조성물과 키트 및 이를 이용한 검출 방법 |
| CN102952886A (zh) * | 2012-11-28 | 2013-03-06 | 中华人民共和国张家港出入境检验检疫局 | 艰难梭菌肠毒素a、b双重荧光定量pcr检测方法及检测用试剂盒 |
| US20140274770A1 (en) | 2013-03-13 | 2014-09-18 | Quidel Corporation | Pcr assays and reagents for molecular detection of infectious agents |
| TWI504751B (zh) * | 2013-09-25 | 2015-10-21 | Univ Nat Cheng Kung | 檢測困難梭狀桿菌核醣分型027之序列、技術平台及其方法 |
| FI126289B (en) * | 2014-12-19 | 2016-09-15 | Mobidiag Ltd | Method for detecting the presence of a hypervirulent strain of Clostridium difficile |
| US20190211377A1 (en) * | 2016-12-22 | 2019-07-11 | Roche Molecular Systems, Inc. | Cobra probes to detect a marker for epidemic ribotypes of clostridium difficile |
| EP3724354A1 (en) * | 2017-12-15 | 2020-10-21 | Gen-Probe Incorporated | Compositions and methods for detecting toxigenic clostridium difficile |
| EP3822370A1 (en) | 2019-11-15 | 2021-05-19 | Curiosity Diagnostics Sp. z o.o. | Method of determining the presence of a hyper-virulent clostridioides difficile strain of the b1/nap1/027 group in a sample |
| CN111705150B (zh) * | 2020-08-19 | 2020-12-25 | 中南大学湘雅医院 | 用于检测艰难梭菌核糖体027型毒力调节基因tcdC的方法、引物和试剂盒 |
Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2348695C2 (ru) * | 2006-05-23 | 2009-03-10 | Закрытое акционерное общество "Молекулярно-медицинские технологии" | Дифференцирующий и специфический олигонуклеотиды для идентификации последовательностей днк инфекционных агентов в биологических материалах, способ видовой идентификации инфекционных агентов, биочип и набор для осуществления этого способа |
| WO2009030031A1 (en) * | 2007-09-06 | 2009-03-12 | Geneohm Sciences Canada, Inc. | Detection of toxigenic strains of clostridium difficile |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
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| US5298421A (en) | 1990-04-26 | 1994-03-29 | Calgene, Inc. | Plant medium-chain-preferring acyl-ACP thioesterases and related methods |
| US5210015A (en) | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US5925517A (en) | 1993-11-12 | 1999-07-20 | The Public Health Research Institute Of The City Of New York, Inc. | Detectably labeled dual conformation oligonucleotide probes, assays and kits |
| DE69739357D1 (de) | 1996-06-04 | 2009-05-28 | Univ Utah Res Found | Überwachung der hybridisierung während pcr |
| FR2812306B1 (fr) * | 2000-07-28 | 2005-01-14 | Gabriel Festoc | Systeme d'amplification en chaine par polymerse de sequences nucleiques cibles |
| US8133703B2 (en) * | 2004-10-27 | 2012-03-13 | Ceoheid | Closed-system multi-stage nucleic acid amplification reactions |
| US20070026426A1 (en) * | 2005-04-26 | 2007-02-01 | Applera Corporation | System for genetic surveillance and analysis |
| JP5596893B2 (ja) | 2006-11-10 | 2014-09-24 | キヤノン株式会社 | プローブセット、プローブ固定担体及び遺伝子検査方法 |
| US7687084B2 (en) | 2007-08-06 | 2010-03-30 | Tien Linsheng W | Cool-pet system |
| EP2252702B1 (en) * | 2008-02-08 | 2014-01-29 | Mayo Foundation for Medical Education and Research | Detection of clostridium difficile |
| EP2419527B1 (en) | 2009-04-07 | 2013-06-26 | Koninklijke Philips Electronics N.V. | Method for the detection and characterization of a toxinogenic clostridium difficile strain |
-
2010
- 2010-03-31 EP EP10713524.6A patent/EP2419527B1/en not_active Revoked
- 2010-03-31 CN CN201080014449.3A patent/CN102378817B/zh active Active
- 2010-03-31 KR KR1020117026359A patent/KR101798211B1/ko active Active
- 2010-03-31 RU RU2011144853A patent/RU2612789C2/ru active
- 2010-03-31 US US13/262,844 patent/US20120028819A1/en not_active Abandoned
- 2010-03-31 WO PCT/IB2010/051396 patent/WO2010116290A1/en not_active Ceased
- 2010-03-31 BR BRPI1006757-4A patent/BRPI1006757A2/pt not_active Application Discontinuation
- 2010-03-31 JP JP2012504107A patent/JP5859424B2/ja active Active
-
2017
- 2017-06-08 US US15/617,010 patent/US10876174B2/en active Active
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2348695C2 (ru) * | 2006-05-23 | 2009-03-10 | Закрытое акционерное общество "Молекулярно-медицинские технологии" | Дифференцирующий и специфический олигонуклеотиды для идентификации последовательностей днк инфекционных агентов в биологических материалах, способ видовой идентификации инфекционных агентов, биочип и набор для осуществления этого способа |
| WO2009030031A1 (en) * | 2007-09-06 | 2009-03-12 | Geneohm Sciences Canada, Inc. | Detection of toxigenic strains of clostridium difficile |
Non-Patent Citations (8)
| Title |
|---|
| BOUVET P.J. et al., Genetic relatedness of Clostridium difficile isolates from various origins determined by triple-locus sequence analysis based on toxin regulatory genes tcdC, tcdR, and cdtR, J Clin Microbiol. 2008, v.46, no.11, p. 3703-3713. * |
| CURRY S.R. et al., tcdC genotypes associated with severe TcdC truncation in an epidemic clone and other strains of Clostridium difficile, J Clin Microbiol, 2007, v.45, no.1, p. 215-221. * |
| MACCANNELL D.R. et al., Molecular analysis of Clostridium difficile PCR ribotype 027 isolates from Eastern and Western Canada, J Clin Microbiol, 2006, v.44, no.6, p. 2147-2152. * |
| PERSSON S. et al., New multiplex PCR method for the detection of Clostridium difficile toxin A (tcdA) and toxin B (tcdB) and the binary toxin (cdtA/cdtB) genes applied to a Danish strain collection, Clin Microbiol Infect, 2008, v.14, no.11, p.1057-1064. * |
| SPIGAGLIA P. et al., Molecular analysis of the pathogenicity locus and polymorphism in the putative negative regulator of toxin production (TcdC) among Clostridium difficile clinical isolates, J Clin Microbiol, 2002, v.40, no.9, p. 3470-3475. * |
| SPIGAGLIA P. et al., Molecular analysis of the pathogenicity locus and polymorphism in the putative negative regulator of toxin production (TcdC) among Clostridium difficile clinical isolates, J Clin Microbiol, 2002, v.40, no.9, p. 3470-3475. CURRY S.R. et al., tcdC genotypes associated with severe TcdC truncation in an epidemic clone and other strains of Clostridium difficile, J Clin Microbiol, 2007, v.45, no.1, p. 215-221. BOUVET P.J. et al., Genetic relatedness of Clostridium difficile isolates from various origins determined by triple-locus sequence analysis based on toxin regulatory genes tcdC, tcdR, and cdtR, J Clin Microbiol. 2008, v.46, no.11, p. 3703-3713. PERSSON S. et al., New multiplex PCR method for the detection of Clostridium difficile toxin A (tcdA) and toxin B (tcdB) and the binary toxin (cdtA/cdtB) genes applied to a Danish strain collection, Clin Microbiol Infect, 2008, v.14, no.11, p.1057-1064. WOLFF D. et al., Rapid detection of the Clostridium difficile ribotype 0 * |
| VAN DEN BERG R.J. et al., Characterization of toxin A-negative, toxin B-positive Clostridium difficile isolates from outbreaks in different countries by amplified fragment length polymorphism and PCR ribotyping, J Clin Microbiol, 2004, v.42, no.3, p.1035-1041. * |
| WOLFF D. et al., Rapid detection of the Clostridium difficile ribotype 027 tcdC gene frame shift mutation at position 117 by real-time PCR and melt curve analysis, Eur J Clin Microbiol Infect Dis, 2009, v.28, no.8, p. 959-962. * |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2841390C1 (ru) * | 2024-11-27 | 2025-06-06 | Федеральное государственное бюджетное образовательное учреждение высшего образования "Санкт-Петербургский государственный аграрный университет" (ФГБОУ ВО СПбГАУ) | Способ оценки генов токсинов Clostridium perfringens и Clostridioides difficile в консервированных объемистых кормах для крупного рогатого скота |
Also Published As
| Publication number | Publication date |
|---|---|
| CN102378817A (zh) | 2012-03-14 |
| EP2419527A1 (en) | 2012-02-22 |
| US10876174B2 (en) | 2020-12-29 |
| KR20120005019A (ko) | 2012-01-13 |
| RU2011144853A (ru) | 2013-05-20 |
| EP2419527B1 (en) | 2013-06-26 |
| US20180237827A1 (en) | 2018-08-23 |
| JP5859424B2 (ja) | 2016-02-10 |
| JP2012528567A (ja) | 2012-11-15 |
| KR101798211B1 (ko) | 2017-11-15 |
| US20120028819A1 (en) | 2012-02-02 |
| CN102378817B (zh) | 2015-09-30 |
| BRPI1006757A2 (pt) | 2020-03-10 |
| WO2010116290A1 (en) | 2010-10-14 |
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