PH12022550137A1 - Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms - Google Patents

Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms

Info

Publication number
PH12022550137A1
PH12022550137A1 PH1/2022/550137A PH12022550137A PH12022550137A1 PH 12022550137 A1 PH12022550137 A1 PH 12022550137A1 PH 12022550137 A PH12022550137 A PH 12022550137A PH 12022550137 A1 PH12022550137 A1 PH 12022550137A1
Authority
PH
Philippines
Prior art keywords
probes
genomic sequences
detection
arrays
combinations
Prior art date
Application number
PH1/2022/550137A
Other languages
English (en)
Inventor
Sonja Bednar
Holger Klapproth
Original Assignee
Safeguard Biosystems Holdings Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Safeguard Biosystems Holdings Ltd filed Critical Safeguard Biosystems Holdings Ltd
Publication of PH12022550137A1 publication Critical patent/PH12022550137A1/en

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Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6834Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/10Detection mode being characterised by the assay principle
    • C12Q2565/102Multiple non-interacting labels
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50Detection characterised by immobilisation to a surface
    • C12Q2565/501Detection characterised by immobilisation to a surface being an array of oligonucleotides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/16Primer sets for multiplex assays

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
PH1/2022/550137A 2019-07-19 2020-07-17 Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms PH12022550137A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201962876413P 2019-07-19 2019-07-19
US202063004664P 2020-04-03 2020-04-03
PCT/EP2020/070308 WO2021013736A1 (en) 2019-07-19 2020-07-17 Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms

Publications (1)

Publication Number Publication Date
PH12022550137A1 true PH12022550137A1 (en) 2024-02-12

Family

ID=71670264

Family Applications (1)

Application Number Title Priority Date Filing Date
PH1/2022/550137A PH12022550137A1 (en) 2019-07-19 2020-07-17 Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms

Country Status (14)

Country Link
US (1) US20220267833A1 (https=)
EP (1) EP3999658A1 (https=)
JP (1) JP2022540716A (https=)
KR (1) KR20220035482A (https=)
CN (1) CN114269944A (https=)
AU (1) AU2020317617A1 (https=)
BR (1) BR112021026672A2 (https=)
CA (1) CA3147364A1 (https=)
IL (1) IL289760A (https=)
MX (1) MX2022000628A (https=)
PH (1) PH12022550137A1 (https=)
TW (1) TW202117021A (https=)
WO (1) WO2021013736A1 (https=)
ZA (1) ZA202200284B (https=)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11562057B2 (en) 2020-02-05 2023-01-24 Quantum Digital Solutions Corporation Ecosystem security platforms for enabling data exchange between members of a digital ecosystem using digital genomic data sets
EP4679262A3 (en) 2021-02-04 2026-04-01 Quantum Digital Solutions Corporation Cyphergenics-based ecosystem security platforms
WO2022169969A1 (en) * 2021-02-04 2022-08-11 Quantum Digital Solutions Corporation Cyphergenics-based ecosystem security platforms
WO2024172833A2 (en) 2022-08-03 2024-08-22 Quantum Digital Solutions Corporation Cyphergenics-enabled digital ecosystems and cyphergenics-enabled digital signatures
WO2026006533A1 (en) 2024-06-26 2026-01-02 Quantum Digital Solutions Corporation Collusion-resistant identity-based and quantum-resilient secure correlation schemes

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5066584A (en) 1988-09-23 1991-11-19 Cetus Corporation Methods for generating single stranded dna by the polymerase chain reaction
US6638719B1 (en) * 1999-07-14 2003-10-28 Affymetrix, Inc. Genotyping biallelic markers
US20030134293A1 (en) * 1999-11-16 2003-07-17 Zhiping Liu Method for rapid and accurate identification of microorganisms
US7205104B2 (en) * 2000-03-24 2007-04-17 Eppendorf Array Technologies Sa (Eat) Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays
CN1280422C (zh) 2004-08-26 2006-10-18 北京博奥生物芯片有限责任公司 一种不对称pcr扩增方法及其应用
US20060228718A1 (en) * 2005-04-11 2006-10-12 National Cheng Kung University Method for rapidly identifying bacteria and kit thereof
US20110151453A1 (en) * 2007-07-11 2011-06-23 Bergeron Michel G Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens
EP3181700A1 (en) 2015-12-18 2017-06-21 Safeguard Biosystems Holdings Ltd. Three-dimensional polymer networks with channels situated therein
EP3199629A1 (en) 2016-01-30 2017-08-02 Safeguard Biosystems Holdings Ltd. Bead beating tube and method for extracting deoxyribonucleic acid and/or ribonucleic acid from microorganisms
EP3418741A1 (en) 2017-06-19 2018-12-26 Safeguard Biosystems Holdings Ltd. Three-dimensional polymer networks and their use
US10513730B2 (en) 2017-11-22 2019-12-24 Safeguard Biosystems Holdings Ltd. Asymmetric PCR methods, primers and kits

Also Published As

Publication number Publication date
TW202117021A (zh) 2021-05-01
EP3999658A1 (en) 2022-05-25
WO2021013736A1 (en) 2021-01-28
US20220267833A1 (en) 2022-08-25
JP2022540716A (ja) 2022-09-16
AU2020317617A1 (en) 2022-03-03
CN114269944A (zh) 2022-04-01
IL289760A (en) 2022-03-01
ZA202200284B (en) 2022-09-28
MX2022000628A (es) 2022-03-11
BR112021026672A2 (pt) 2022-02-15
CA3147364A1 (en) 2021-01-28
KR20220035482A (ko) 2022-03-22

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