SG10201407883PA - Multi-sample indexing for multiplex genotyping - Google Patents
Multi-sample indexing for multiplex genotypingInfo
- Publication number
- SG10201407883PA SG10201407883PA SG10201407883PA SG10201407883PA SG10201407883PA SG 10201407883P A SG10201407883P A SG 10201407883PA SG 10201407883P A SG10201407883P A SG 10201407883PA SG 10201407883P A SG10201407883P A SG 10201407883PA SG 10201407883P A SG10201407883P A SG 10201407883PA
- Authority
- SG
- Singapore
- Prior art keywords
- interest
- samples
- sample
- sample indexing
- genotyping
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Microbiology (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Biomedical Technology (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
37 MULTI-SAMPLE INDEXING FOR MULTIPLEX GENOTYPING Abstract: A method for determining the presence of multiple nucleotide sequences of interest in multiple samples while preserving the identity of each sample, by contacting the samples with a plurality of probe sets. The probes are designed to indicate the presence of the sequences of interest and the identity of the sample containing the sequence of interest in complex mixtures. Applications of the method include genotyping, expression analysis, and identification of individual species in complex samples. Kits of probe sets for use in the methods are also provided. (Figure 3a)
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US26736309P | 2009-12-07 | 2009-12-07 |
Publications (1)
Publication Number | Publication Date |
---|---|
SG10201407883PA true SG10201407883PA (en) | 2015-01-29 |
Family
ID=44146143
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
SG10201407883PA SG10201407883PA (en) | 2009-12-07 | 2010-12-07 | Multi-sample indexing for multiplex genotyping |
Country Status (5)
Country | Link |
---|---|
US (2) | US20120202704A1 (en) |
EP (1) | EP2510126B1 (en) |
CN (1) | CN102648295B (en) |
SG (1) | SG10201407883PA (en) |
WO (1) | WO2011071923A2 (en) |
Families Citing this family (50)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
DK2556171T3 (en) | 2010-04-05 | 2015-12-14 | Prognosys Biosciences Inc | Spatially CODED BIOLOGICAL ASSAYS |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
EP3246416A1 (en) | 2011-04-15 | 2017-11-22 | The Johns Hopkins University | Safe sequencing system |
EP2912468B1 (en) | 2012-10-29 | 2018-09-12 | The Johns Hopkins University | Papanicolaou test for ovarian and endometrial cancers |
WO2014089536A1 (en) | 2012-12-07 | 2014-06-12 | Invitae Corporation | Multiplex nucleic acid detection methods |
CN111662960B (en) | 2013-06-25 | 2024-04-12 | 普罗格诺西斯生物科学公司 | Spatially encoded bioanalytical analysis using microfluidic devices |
KR101493982B1 (en) * | 2013-09-26 | 2015-02-23 | 대한민국 | Coding system for cultivar identification and coding method using thereof |
US9857328B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same |
US10006910B2 (en) | 2014-12-18 | 2018-06-26 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same |
US9618474B2 (en) | 2014-12-18 | 2017-04-11 | Edico Genome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
US10020300B2 (en) | 2014-12-18 | 2018-07-10 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
US9859394B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
EP3235010A4 (en) | 2014-12-18 | 2018-08-29 | Agilome, Inc. | Chemically-sensitive field effect transistor |
CN105803055A (en) * | 2014-12-31 | 2016-07-27 | 天昊生物医药科技(苏州)有限公司 | New target gene regional enrichment method based on multiple circulation extension connection |
DK3901281T3 (en) | 2015-04-10 | 2023-01-23 | Spatial Transcriptomics Ab | SPATIALLY SEPARATE, MULTIPLEX NUCLEIC ACID ANALYSIS OF BIOLOGICAL SAMPLES |
WO2017004394A1 (en) * | 2015-06-30 | 2017-01-05 | Nanostring Technologies, Inc. | Methods and kits for simultaneously detecting gene or protein expression in a plurality of sample types using self-assembling fluorescent barcode nanoreporters |
WO2017027653A1 (en) | 2015-08-11 | 2017-02-16 | The Johns Hopkins University | Assaying ovarian cyst fluid |
WO2017201081A1 (en) | 2016-05-16 | 2017-11-23 | Agilome, Inc. | Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids |
US11091791B2 (en) * | 2017-02-24 | 2021-08-17 | Mgi Tech Co., Ltd. | Methods for hybridization based hook ligation |
AU2018342007A1 (en) | 2017-08-07 | 2020-02-27 | Board Of Regents, The University Of Texas Systems | Methods and materials for assessing and treating cancer |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
AU2019351130A1 (en) | 2018-09-27 | 2021-04-08 | Grail, Llc | Methylation markers and targeted methylation probe panel |
WO2020123320A2 (en) | 2018-12-10 | 2020-06-18 | 10X Genomics, Inc. | Imaging system hardware |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
WO2020243579A1 (en) | 2019-05-30 | 2020-12-03 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
EP4025711A2 (en) | 2019-11-08 | 2022-07-13 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
ES2946357T3 (en) | 2019-12-23 | 2023-07-17 | 10X Genomics Inc | Methods for spatial analysis using RNA template ligation |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
EP4242325A3 (en) | 2020-04-22 | 2023-10-04 | 10X Genomics, Inc. | Methods for spatial analysis using targeted rna depletion |
WO2021236929A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
WO2021237087A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
EP4025692A2 (en) | 2020-06-02 | 2022-07-13 | 10X Genomics, Inc. | Nucleic acid library methods |
EP4158054A1 (en) | 2020-06-02 | 2023-04-05 | 10X Genomics, Inc. | Spatial transcriptomics for antigen-receptors |
WO2021252499A1 (en) | 2020-06-08 | 2021-12-16 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
EP4165207A1 (en) | 2020-06-10 | 2023-04-19 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
WO2021263111A1 (en) | 2020-06-25 | 2021-12-30 | 10X Genomics, Inc. | Spatial analysis of dna methylation |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
EP4121555A1 (en) | 2020-12-21 | 2023-01-25 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
WO2023034489A1 (en) | 2021-09-01 | 2023-03-09 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
Family Cites Families (30)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
CA1340807C (en) | 1988-02-24 | 1999-11-02 | Lawrence T. Malek | Nucleic acid amplification process |
US5130238A (en) | 1988-06-24 | 1992-07-14 | Cangene Corporation | Enhanced nucleic acid amplification process |
US5455166A (en) | 1991-01-31 | 1995-10-03 | Becton, Dickinson And Company | Strand displacement amplification |
US5681697A (en) | 1993-12-08 | 1997-10-28 | Chiron Corporation | Solution phase nucleic acid sandwich assays having reduced background noise and kits therefor |
US6090592A (en) | 1994-08-03 | 2000-07-18 | Mosaic Technologies, Inc. | Method for performing amplification of nucleic acid on supports |
US5641658A (en) | 1994-08-03 | 1997-06-24 | Mosaic Technologies, Inc. | Method for performing amplification of nucleic acid with two primers bound to a single solid support |
US6468751B1 (en) | 1994-08-03 | 2002-10-22 | Mosaic Technologies, Inc. | Method and apparatus for performing amplification of nucleic acid on supports |
US6060288A (en) | 1994-08-03 | 2000-05-09 | Mosaic Technologies | Method for performing amplification of nucleic acid on supports |
WO1996015271A1 (en) * | 1994-11-16 | 1996-05-23 | Abbott Laboratories | Multiplex ligations-dependent amplification |
EP1736554B1 (en) * | 1996-05-29 | 2013-10-09 | Cornell Research Foundation, Inc. | Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions |
ES2563643T3 (en) | 1997-04-01 | 2016-03-15 | Illumina Cambridge Limited | Nucleic acid sequencing method |
AR021833A1 (en) | 1998-09-30 | 2002-08-07 | Applied Research Systems | METHODS OF AMPLIFICATION AND SEQUENCING OF NUCLEIC ACID |
US6355431B1 (en) * | 1999-04-20 | 2002-03-12 | Illumina, Inc. | Detection of nucleic acid amplification reactions using bead arrays |
US6300070B1 (en) | 1999-06-04 | 2001-10-09 | Mosaic Technologies, Inc. | Solid phase methods for amplifying multiple nucleic acids |
US20040121364A1 (en) * | 2000-02-07 | 2004-06-24 | Mark Chee | Multiplex nucleic acid reactions |
US7582420B2 (en) | 2001-07-12 | 2009-09-01 | Illumina, Inc. | Multiplex nucleic acid reactions |
US7611869B2 (en) * | 2000-02-07 | 2009-11-03 | Illumina, Inc. | Multiplexed methylation detection methods |
JP2003521252A (en) * | 2000-02-07 | 2003-07-15 | イルミナ インコーポレイテッド | Nucleic acid detection method using universal priming |
US20040002090A1 (en) | 2002-03-05 | 2004-01-01 | Pascal Mayer | Methods for detecting genome-wide sequence variations associated with a phenotype |
US20040086892A1 (en) * | 2002-11-06 | 2004-05-06 | Crothers Donald M. | Universal tag assay |
ATE399884T1 (en) * | 2004-03-24 | 2008-07-15 | Applera Corp | CODING AND DECODING REACTIONS FOR DETERMINING TARGET POLYNUCLEOTIDES |
WO2007145612A1 (en) | 2005-06-06 | 2007-12-21 | 454 Life Sciences Corporation | Paired end sequencing |
GB0514936D0 (en) | 2005-07-20 | 2005-08-24 | Solexa Ltd | Preparation of templates for nucleic acid sequencing |
GB0514910D0 (en) | 2005-07-20 | 2005-08-24 | Solexa Ltd | Method for sequencing a polynucleotide template |
WO2007091077A1 (en) | 2006-02-08 | 2007-08-16 | Solexa Limited | Method for sequencing a polynucleotide template |
WO2007098427A2 (en) * | 2006-02-18 | 2007-08-30 | Michael Strathmann | Massively multiplexed sequencing |
ES2446927T3 (en) * | 2006-03-01 | 2014-03-10 | Keygene N.V. | Rapid sequence-based SNP detection using ligation assays |
US7754429B2 (en) | 2006-10-06 | 2010-07-13 | Illumina Cambridge Limited | Method for pair-wise sequencing a plurity of target polynucleotides |
US20080242560A1 (en) * | 2006-11-21 | 2008-10-02 | Gunderson Kevin L | Methods for generating amplified nucleic acid arrays |
-
2010
- 2010-12-07 SG SG10201407883PA patent/SG10201407883PA/en unknown
- 2010-12-07 CN CN201080055538.2A patent/CN102648295B/en active Active
- 2010-12-07 WO PCT/US2010/059286 patent/WO2011071923A2/en active Application Filing
- 2010-12-07 US US13/501,502 patent/US20120202704A1/en not_active Abandoned
- 2010-12-07 EP EP10836550.3A patent/EP2510126B1/en active Active
-
2014
- 2014-08-26 US US14/469,312 patent/US20140364323A1/en not_active Abandoned
Also Published As
Publication number | Publication date |
---|---|
CN102648295A (en) | 2012-08-22 |
EP2510126A4 (en) | 2013-06-05 |
CN102648295B (en) | 2017-08-08 |
US20120202704A1 (en) | 2012-08-09 |
EP2510126B1 (en) | 2017-08-09 |
WO2011071923A3 (en) | 2011-10-20 |
EP2510126A2 (en) | 2012-10-17 |
US20140364323A1 (en) | 2014-12-11 |
WO2011071923A2 (en) | 2011-06-16 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
SG10201407883PA (en) | Multi-sample indexing for multiplex genotyping | |
MX2021003771A (en) | Analysis of multiple analytes using a single assay. | |
MY188348A (en) | Single-molecule sequencing of plasma dna | |
EP4282977A3 (en) | Spatially distinguished, multiplex nucleic acid analysis of biological specimens | |
SG10201807112XA (en) | Analysis of nucleic acids associated with single cells using nucleic acid barcodes | |
GB2500360A (en) | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps | |
SG194233A1 (en) | Identification of polynucleotides associated with a sample | |
WO2009076485A3 (en) | Sequencing of nucleic acids | |
CN103397101A (en) | Fluorescently-labeled gene multiplex amplification method for identifying sources of goat, sheep, pig and duck meat simultaneously | |
WO2010005991A3 (en) | Circulating tumor and tumor stem cell detection using genomic specific probes | |
WO2013010134A3 (en) | Systems, apparatus and methods for biochemical analysis | |
MX2014006118A (en) | Detecting analytes. | |
WO2011132061A3 (en) | Methylation profiling of dna samples | |
EA201291001A1 (en) | METHODS OF MEASUREMENT OF ENZYMATIVE ACTIVITY, USEFUL WHEN DETERMINING THE VIABILITY OF CELLS IN UNCLEANED SAMPLES | |
MX339866B (en) | Method for analyzing d4z4 tandem repeat arrays of nucleic acid and kit therefore. | |
CN102776183A (en) | Amplimer of large yellow croaker mitochondrion complete genome sequence and application thereof | |
WO2013090386A3 (en) | Methods and kits for room temperature in situ detection of a target nucleic acid in a biological sample | |
GB202105390D0 (en) | Methods, devices and kits for preparing nucleic acid samples for storage and analysis | |
WO2012135620A8 (en) | Molecular gram stain | |
CN105002295A (en) | Polynucleotide, method and kit for detecting Bacillus anthraci | |
MY163078A (en) | Rapid and accurate analysis of protein sialylation | |
MX2021003760A (en) | Identification and analysis of microbial samples by rapid incubation and nucleic acid enrichment. | |
CN104073560B (en) | The rapid molecular discrimination method of a kind of Eucommia ulmoides or former plant | |
MX2020009282A (en) | Microarray based multiplex pathogen analysis and uses thereof. | |
Kokkaliaris et al. | Understanding hematopoiesis from a single-cell standpoint |