KR20080052585A - 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 - Google Patents

올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 Download PDF

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KR20080052585A
KR20080052585A KR1020087006089A KR20087006089A KR20080052585A KR 20080052585 A KR20080052585 A KR 20080052585A KR 1020087006089 A KR1020087006089 A KR 1020087006089A KR 20087006089 A KR20087006089 A KR 20087006089A KR 20080052585 A KR20080052585 A KR 20080052585A
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nucleic acid
target nucleic
oligonucleotide
probe
probes
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KR1020087006089A
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Korean (ko)
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크리스토퍼 윙 청 웡
윙 킨 성
찰리 리
랜스 데이비드 밀러
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에이전시 포 사이언스, 테크놀로지 앤드 리서치
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Publication of KR20080052585A publication Critical patent/KR20080052585A/ko
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00Subject matter not provided for in other groups of this subclass
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6811Selection methods for production or design of target specific oligonucleotides or binding molecules
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
KR1020087006089A 2005-08-12 2006-08-08 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치 Ceased KR20080052585A (ko)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US11/202,023 2005-08-12
US11/202,023 US20070042388A1 (en) 2005-08-12 2005-08-12 Method of probe design and/or of nucleic acids detection

Publications (1)

Publication Number Publication Date
KR20080052585A true KR20080052585A (ko) 2008-06-11

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KR1020087006089A Ceased KR20080052585A (ko) 2005-08-12 2006-08-08 올리고뉴클레오티드 디자인 및/또는 핵산 탐지 방법및/또는 장치

Country Status (7)

Country Link
US (3) US20070042388A1 (enExample)
EP (1) EP1922418A4 (enExample)
JP (1) JP2009504153A (enExample)
KR (1) KR20080052585A (enExample)
CN (1) CN101292044B (enExample)
AU (1) AU2006280489B2 (enExample)
WO (1) WO2007021250A2 (enExample)

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102020614B1 (ko) * 2018-09-11 2019-09-11 한국과학기술정보연구원 결핵 진단용 프라이머 세트 및 이의 용도
WO2020054906A1 (ko) * 2018-09-11 2020-03-19 한국과학기술정보연구원 목표 유전자를 검출하기 위한 프라이머의 설계 방법

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR101138864B1 (ko) * 2005-03-08 2012-05-14 삼성전자주식회사 프라이머 및 프로브 세트를 설계하는 방법, 그에 의하여 설계된 프라이머 및 프로브 세트, 상기 세트를 포함하는 키트, 상기 방법을 컴퓨터가 수행할 수 있도록 하는 프로그램을기록한 컴퓨터 판독가능한 매체 및 상기 세트를 이용한 표적 서열의 동정 방법
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection
US20100159533A1 (en) * 2008-11-24 2010-06-24 Helicos Biosciences Corporation Simplified sample preparation for rna analysis
WO2011046614A2 (en) * 2009-10-16 2011-04-21 The Regents Of The University Of California Methods and systems for phylogenetic analysis
US20110152109A1 (en) * 2009-12-21 2011-06-23 Gardner Shea N Biological sample target classification, detection and selection methods, and related arrays and oligonucleotide probes
WO2012173636A1 (en) * 2011-06-16 2012-12-20 University Of Rochester Hiv incidence assays with high sensitivity and specificity
JP5756247B1 (ja) 2012-05-08 2015-07-29 アダプティブ バイオテクノロジーズ コーポレイション マルチプレックスpcr反応における増幅バイアスを測定し校正する組成物及び方法
CN105780129B (zh) * 2014-12-15 2019-06-11 天津华大基因科技有限公司 目标区域测序文库构建方法
US11319602B2 (en) 2017-02-07 2022-05-03 Tcm Biotech Internationl Corp. Probe combination for detection of cancer
US10787699B2 (en) * 2017-02-08 2020-09-29 Microsoft Technology Licensing, Llc Generating pluralities of primer and payload designs for retrieval of stored nucleotides
JP6995604B2 (ja) * 2017-12-15 2022-01-14 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット
CN109097450B (zh) * 2018-08-30 2022-05-13 江苏省疾病预防控制中心 一种核酸序列非依赖的全rna扩增方法
CN115101128B (zh) * 2022-06-29 2023-09-15 纳昂达(南京)生物科技有限公司 一种杂交捕获探针脱靶危险性评估的方法

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000194554A (ja) * 1998-12-25 2000-07-14 Nec Corp 演算処理装置
US20030096986A1 (en) * 2001-10-25 2003-05-22 Affymetrix, Incorporated Methods and computer software products for selecting nucleic acid probes
GB2377017A (en) * 2001-06-28 2002-12-31 Animal Health Inst Detection of foot and mouth disease virus
JP3980030B2 (ja) * 2002-08-12 2007-09-19 株式会社日立ハイテクノロジーズ Dnaマイクロアレイを用いた核酸検出方法及び核酸検出装置
US20040259124A1 (en) * 2003-02-19 2004-12-23 Affymetrix, Inc. Methods for oligonucleotide probe design
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR102020614B1 (ko) * 2018-09-11 2019-09-11 한국과학기술정보연구원 결핵 진단용 프라이머 세트 및 이의 용도
WO2020054906A1 (ko) * 2018-09-11 2020-03-19 한국과학기술정보연구원 목표 유전자를 검출하기 위한 프라이머의 설계 방법

Also Published As

Publication number Publication date
JP2009504153A (ja) 2009-02-05
EP1922418A4 (en) 2010-02-03
EP1922418A2 (en) 2008-05-21
US20090053708A1 (en) 2009-02-26
WO2007021250A3 (en) 2007-07-05
WO2007021250A2 (en) 2007-02-22
US20070042388A1 (en) 2007-02-22
CN101292044A (zh) 2008-10-22
AU2006280489A1 (en) 2007-02-22
CN101292044B (zh) 2012-11-07
US20120309643A1 (en) 2012-12-06
AU2006280489B2 (en) 2012-05-24
US8234079B2 (en) 2012-07-31

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