JP2009504153A - オリゴヌクレオチド設計および／または核酸検出の方法および／または装置 - Google Patents

オリゴヌクレオチド設計および／または核酸検出の方法および／または装置 Download PDF

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JP2009504153A
JP2009504153A JP2008525967A JP2008525967A JP2009504153A JP 2009504153 A JP2009504153 A JP 2009504153A JP 2008525967 A JP2008525967 A JP 2008525967A JP 2008525967 A JP2008525967 A JP 2008525967A JP 2009504153 A JP2009504153 A JP 2009504153A
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nucleic acid
target nucleic
probe
oligonucleotide
probes
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JP2009504153A5 (enExample
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ワン，クリストファー・ウィン・チョン
スン，ウィン‐キン
リー，チャーリー
ミラー，ランス・デイヴィッド
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エイジェンシー・フォー・サイエンス，テクノロジー・アンド・リサーチ
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Publication of JP2009504153A publication Critical patent/JP2009504153A/ja
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00—Subject matter not provided for in other groups of this subclass
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6811—Selection methods for production or design of target specific oligonucleotides or binding molecules
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
JP2008525967A 2005-08-12 2006-08-08 オリゴヌクレオチド設計および／または核酸検出の方法および／または装置 Pending JP2009504153A (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US11/202,023 US20070042388A1 (en) 2005-08-12 2005-08-12 Method of probe design and/or of nucleic acids detection
PCT/SG2006/000224 WO2007021250A2 (en) 2005-08-12 2006-08-08 Method and/or apparatus of oligonucleotide design and/or nucleic acid detection

Publications (2)

Publication Number Publication Date
JP2009504153A true JP2009504153A (ja) 2009-02-05
JP2009504153A5 JP2009504153A5 (enExample) 2009-09-24

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JP2008525967A Pending JP2009504153A (ja) 2005-08-12 2006-08-08 オリゴヌクレオチド設計および／または核酸検出の方法および／または装置

Country Status (7)

Country Link
US (3) US20070042388A1 (enExample)
EP (1) EP1922418A4 (enExample)
JP (1) JP2009504153A (enExample)
KR (1) KR20080052585A (enExample)
CN (1) CN101292044B (enExample)
AU (1) AU2006280489B2 (enExample)
WO (1) WO2007021250A2 (enExample)

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2006246888A (ja) * 2005-03-08 2006-09-21 Samsung Electronics Co Ltd プライマー−プローブセットを設計する方法、それによって設計されたプライマー−プローブセット、該セットを含むキット、該方法をコンピュータに実行させるプログラムを記録したコンピュータ読み取り可能な記録媒体、および該セットを利用した標的配列の同定方法
WO2019117192A1 (ja) * 2017-12-15 2019-06-20 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット
JP2020503067A (ja) * 2017-02-07 2020-01-30 ティーシーエム バイオテック インターナショナル コーポレーション 癌の検出用のプローブの組合せ

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection
US20100159533A1 (en) * 2008-11-24 2010-06-24 Helicos Biosciences Corporation Simplified sample preparation for rna analysis
WO2011046614A2 (en) * 2009-10-16 2011-04-21 The Regents Of The University Of California Methods and systems for phylogenetic analysis
US20110152109A1 (en) * 2009-12-21 2011-06-23 Gardner Shea N Biological sample target classification, detection and selection methods, and related arrays and oligonucleotide probes
US20140163896A1 (en) * 2011-06-16 2014-06-12 University Of Rochester Hiv incidence assays with high sensitivity and specificity
ES2711156T3 (es) * 2012-05-08 2019-04-30 Adaptive Biotechnologies Corp Método para medir y calibrar el sesgo de amplificación en reacciones de PCR multiplexadas
CN105780129B (zh) * 2014-12-15 2019-06-11 天津华大基因科技有限公司 目标区域测序文库构建方法
US10787699B2 (en) * 2017-02-08 2020-09-29 Microsoft Technology Licensing, Llc Generating pluralities of primer and payload designs for retrieval of stored nucleotides
CN109097450B (zh) * 2018-08-30 2022-05-13 江苏省疾病预防控制中心 一种核酸序列非依赖的全rna扩增方法
KR102020614B1 (ko) * 2018-09-11 2019-09-11 한국과학기술정보연구원 결핵 진단용 프라이머 세트 및 이의 용도
WO2020054906A1 (ko) * 2018-09-11 2020-03-19 한국과학기술정보연구원 목표 유전자를 검출하기 위한 프라이머의 설계 방법
CN115101128B (zh) * 2022-06-29 2023-09-15 纳昂达(南京)生物科技有限公司 一种杂交捕获探针脱靶危险性评估的方法

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000194554A (ja) * 1998-12-25 2000-07-14 Nec Corp 演算処理装置
WO2004017068A1 (ja) * 2002-08-12 2004-02-26 Hitachi High-Technologies Corporation Ｄｎａマイクロアレイを用いた核酸検出方法及び核酸検出装置

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20030096986A1 (en) * 2001-10-25 2003-05-22 Affymetrix, Incorporated Methods and computer software products for selecting nucleic acid probes
GB2377017A (en) * 2001-06-28 2002-12-31 Animal Health Inst Detection of foot and mouth disease virus
US20040259124A1 (en) * 2003-02-19 2004-12-23 Affymetrix, Inc. Methods for oligonucleotide probe design
US20070042388A1 (en) * 2005-08-12 2007-02-22 Wong Christopher W Method of probe design and/or of nucleic acids detection

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2000194554A (ja) * 1998-12-25 2000-07-14 Nec Corp 演算処理装置
WO2004017068A1 (ja) * 2002-08-12 2004-02-26 Hitachi High-Technologies Corporation Ｄｎａマイクロアレイを用いた核酸検出方法及び核酸検出装置

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
JPN6012063253; Ｐｒｏｃ．　ＩＥＥＥ　Ｃｏｍｐｕｔ．　Ｓｏｃ．　Ｂｉｏｉｎｆｏｒｍ．　Ｃｏｎｆ． ｖｏｌ．２, 2003, ｐｐ．６５-７４ *

Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2006246888A (ja) * 2005-03-08 2006-09-21 Samsung Electronics Co Ltd プライマー−プローブセットを設計する方法、それによって設計されたプライマー−プローブセット、該セットを含むキット、該方法をコンピュータに実行させるプログラムを記録したコンピュータ読み取り可能な記録媒体、および該セットを利用した標的配列の同定方法
JP2020503067A (ja) * 2017-02-07 2020-01-30 ティーシーエム バイオテック インターナショナル コーポレーション 癌の検出用のプローブの組合せ
US11319602B2 (en) 2017-02-07 2022-05-03 Tcm Biotech Internationl Corp. Probe combination for detection of cancer
WO2019117192A1 (ja) * 2017-12-15 2019-06-20 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット

Also Published As

Publication number Publication date
US20090053708A1 (en) 2009-02-26
CN101292044A (zh) 2008-10-22
AU2006280489B2 (en) 2012-05-24
AU2006280489A1 (en) 2007-02-22
KR20080052585A (ko) 2008-06-11
CN101292044B (zh) 2012-11-07
US8234079B2 (en) 2012-07-31
WO2007021250A3 (en) 2007-07-05
WO2007021250A2 (en) 2007-02-22
EP1922418A2 (en) 2008-05-21
US20070042388A1 (en) 2007-02-22
US20120309643A1 (en) 2012-12-06
EP1922418A4 (en) 2010-02-03

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