AU2006280489B2 - Method and/or apparatus of oligonucleotide design and/or nucleic acid detection - Google Patents
Method and/or apparatus of oligonucleotide design and/or nucleic acid detection Download PDFInfo
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- AU2006280489B2 AU2006280489B2 AU2006280489A AU2006280489A AU2006280489B2 AU 2006280489 B2 AU2006280489 B2 AU 2006280489B2 AU 2006280489 A AU2006280489 A AU 2006280489A AU 2006280489 A AU2006280489 A AU 2006280489A AU 2006280489 B2 AU2006280489 B2 AU 2006280489B2
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- nucleic acid
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- oligonucleotide
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- probes
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Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B99/00—Subject matter not provided for in other groups of this subclass
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6811—Selection methods for production or design of target specific oligonucleotides or binding molecules
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
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- G—PHYSICS
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- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
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- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Theoretical Computer Science (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Medical Informatics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US11/202,023 | 2005-08-12 | ||
| US11/202,023 US20070042388A1 (en) | 2005-08-12 | 2005-08-12 | Method of probe design and/or of nucleic acids detection |
| PCT/SG2006/000224 WO2007021250A2 (en) | 2005-08-12 | 2006-08-08 | Method and/or apparatus of oligonucleotide design and/or nucleic acid detection |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2006280489A1 AU2006280489A1 (en) | 2007-02-22 |
| AU2006280489B2 true AU2006280489B2 (en) | 2012-05-24 |
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| KR101138864B1 (ko) * | 2005-03-08 | 2012-05-14 | 삼성전자주식회사 | 프라이머 및 프로브 세트를 설계하는 방법, 그에 의하여 설계된 프라이머 및 프로브 세트, 상기 세트를 포함하는 키트, 상기 방법을 컴퓨터가 수행할 수 있도록 하는 프로그램을기록한 컴퓨터 판독가능한 매체 및 상기 세트를 이용한 표적 서열의 동정 방법 |
| US20070042388A1 (en) * | 2005-08-12 | 2007-02-22 | Wong Christopher W | Method of probe design and/or of nucleic acids detection |
| US20100159533A1 (en) * | 2008-11-24 | 2010-06-24 | Helicos Biosciences Corporation | Simplified sample preparation for rna analysis |
| WO2011046614A2 (en) * | 2009-10-16 | 2011-04-21 | The Regents Of The University Of California | Methods and systems for phylogenetic analysis |
| US20110152109A1 (en) * | 2009-12-21 | 2011-06-23 | Gardner Shea N | Biological sample target classification, detection and selection methods, and related arrays and oligonucleotide probes |
| US20140163896A1 (en) * | 2011-06-16 | 2014-06-12 | University Of Rochester | Hiv incidence assays with high sensitivity and specificity |
| ES2711156T3 (es) * | 2012-05-08 | 2019-04-30 | Adaptive Biotechnologies Corp | Método para medir y calibrar el sesgo de amplificación en reacciones de PCR multiplexadas |
| CN105780129B (zh) * | 2014-12-15 | 2019-06-11 | 天津华大基因科技有限公司 | 目标区域测序文库构建方法 |
| US11319602B2 (en) | 2017-02-07 | 2022-05-03 | Tcm Biotech Internationl Corp. | Probe combination for detection of cancer |
| US10787699B2 (en) * | 2017-02-08 | 2020-09-29 | Microsoft Technology Licensing, Llc | Generating pluralities of primer and payload designs for retrieval of stored nucleotides |
| JP6995604B2 (ja) * | 2017-12-15 | 2022-01-14 | 東洋鋼鈑株式会社 | 一塩基多型検出用プローブの設計方法及びプローブセット |
| CN109097450B (zh) * | 2018-08-30 | 2022-05-13 | 江苏省疾病预防控制中心 | 一种核酸序列非依赖的全rna扩增方法 |
| KR102020614B1 (ko) * | 2018-09-11 | 2019-09-11 | 한국과학기술정보연구원 | 결핵 진단용 프라이머 세트 및 이의 용도 |
| WO2020054906A1 (ko) * | 2018-09-11 | 2020-03-19 | 한국과학기술정보연구원 | 목표 유전자를 검출하기 위한 프라이머의 설계 방법 |
| CN115101128B (zh) * | 2022-06-29 | 2023-09-15 | 纳昂达(南京)生物科技有限公司 | 一种杂交捕获探针脱靶危险性评估的方法 |
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| JP2000194554A (ja) * | 1998-12-25 | 2000-07-14 | Nec Corp | 演算処理装置 |
| US20030096986A1 (en) * | 2001-10-25 | 2003-05-22 | Affymetrix, Incorporated | Methods and computer software products for selecting nucleic acid probes |
| CN100392097C (zh) * | 2002-08-12 | 2008-06-04 | 株式会社日立高新技术 | 使用dna微阵列的核酸检测方法以及核酸检测装置 |
| US20040259124A1 (en) * | 2003-02-19 | 2004-12-23 | Affymetrix, Inc. | Methods for oligonucleotide probe design |
| US20070042388A1 (en) * | 2005-08-12 | 2007-02-22 | Wong Christopher W | Method of probe design and/or of nucleic acids detection |
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| AU2006280489A1 (en) | 2007-02-22 |
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| CN101292044B (zh) | 2012-11-07 |
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| US8234079B2 (en) | 2012-07-31 |
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| US20070042388A1 (en) | 2007-02-22 |
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| EP1922418A4 (en) | 2010-02-03 |
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