JP2016517275A - 多重核酸検出のためのコード化ナノポアセンサー - Google Patents
多重核酸検出のためのコード化ナノポアセンサー Download PDFInfo
- Publication number
- JP2016517275A JP2016517275A JP2016502813A JP2016502813A JP2016517275A JP 2016517275 A JP2016517275 A JP 2016517275A JP 2016502813 A JP2016502813 A JP 2016502813A JP 2016502813 A JP2016502813 A JP 2016502813A JP 2016517275 A JP2016517275 A JP 2016517275A
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- Prior art keywords
- probe
- nucleic acid
- target nucleic
- probe molecule
- capture region
- Prior art date
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6825—Nucleic acid detection involving sensors
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/483—Physical analysis of biological material
- G01N33/487—Physical analysis of biological material of liquid biological material
- G01N33/48707—Physical analysis of biological material of liquid biological material by electrical means
- G01N33/48721—Investigating individual macromolecules, e.g. by translocation through nanopores
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Physics & Mathematics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Biochemistry (AREA)
- Biomedical Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Hematology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Nanotechnology (AREA)
- Urology & Nephrology (AREA)
- Food Science & Technology (AREA)
- Medicinal Chemistry (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Investigating Or Analyzing Materials By The Use Of Electric Means (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361788589P | 2013-03-15 | 2013-03-15 | |
| US61/788,589 | 2013-03-15 | ||
| PCT/US2014/028528 WO2014144217A1 (en) | 2013-03-15 | 2014-03-14 | Encoded nanopore sensor for multiplex nucleic acids detection |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JP2016517275A true JP2016517275A (ja) | 2016-06-16 |
| JP2016517275A5 JP2016517275A5 (enExample) | 2017-04-20 |
Family
ID=51537647
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2016502813A Pending JP2016517275A (ja) | 2013-03-15 | 2014-03-14 | 多重核酸検出のためのコード化ナノポアセンサー |
Country Status (6)
| Country | Link |
|---|---|
| US (2) | US9732379B2 (enExample) |
| EP (1) | EP2971118B1 (enExample) |
| JP (1) | JP2016517275A (enExample) |
| AU (1) | AU2014227754B2 (enExample) |
| CA (1) | CA2906007C (enExample) |
| WO (1) | WO2014144217A1 (enExample) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2023062193A (ja) * | 2018-06-26 | 2023-05-02 | 国立大学法人東京農工大学 | 検査対象が小細胞肺がん又は胆管がんに罹患している又はそのリスクを有することを判定する方法、並びに、これらの判定方法に用いるためのプローブ及びプローブセット |
Families Citing this family (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN105102627B (zh) * | 2013-03-15 | 2018-10-19 | 纽约哥伦比亚大学理事会 | 用于检测样品中多种预定化合物的方法 |
| US11098348B2 (en) | 2015-02-02 | 2021-08-24 | Ontera Inc. | Nanopore detection of target polynucleotides from sample background |
| EP3303620A1 (en) | 2015-06-02 | 2018-04-11 | Nanopore Diagnostics LLC | Nucleic acid detection |
| WO2018093976A1 (en) * | 2016-11-16 | 2018-05-24 | Nanopore Diagnostics, Llc | Analysis of nucleic acids using probe with non-linear tag |
| US11034996B2 (en) | 2018-03-02 | 2021-06-15 | The Curators Of The University Of Missouri | Nucleic acid sequence and capture by formation of an abasic site-derived cross-link |
| JP7377222B2 (ja) * | 2018-06-21 | 2023-11-09 | エフ. ホフマン-ラ ロシュ アーゲー | 配列決定のためのトンネル接合部 |
| JP7344786B2 (ja) * | 2019-12-19 | 2023-09-14 | 株式会社日立製作所 | 溶液中の任意のdna配列を同定する方法 |
| CN112795628B (zh) * | 2021-02-05 | 2024-02-23 | 南京邮电大学 | 基于固态纳米孔传感器的miRNA检测方法、检测探针及试剂盒 |
Citations (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JPS6434300A (en) * | 1987-04-28 | 1989-02-03 | Tamiile Biotechnol Ltd | Improved dna probe |
| JPH0195800A (ja) * | 1987-08-28 | 1989-04-13 | Profile Diagnostic Sci Inc | 遺伝子発現のアツセイ法及びキツト |
| JP2002538839A (ja) * | 1999-03-15 | 2002-11-19 | ピーイー コーポレイション (エヌワイ) | 多重核酸検出のためのプローブ/移動度モディファイア複合体 |
| JP2003527075A (ja) * | 1999-03-25 | 2003-09-16 | ハイセック,インコーポレーテッド | ハイブリダイゼーションによる配列分析のための、溶液ベースの方法 |
| JP2005517900A (ja) * | 2001-11-21 | 2005-06-16 | アプレラ コーポレイション | デジタルアッセイ |
| WO2011106583A1 (en) * | 2010-02-26 | 2011-09-01 | Ventana Medical Systems, Inc. | Polytag probes |
| WO2012009578A2 (en) * | 2010-07-14 | 2012-01-19 | The Curators Of The University Of Missouri | Nanopore-facilitated single molecule detection of nucleic acids |
| WO2012083249A2 (en) * | 2010-12-17 | 2012-06-21 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by synthesis using modified nucleotides and nanopore detection |
Family Cites Families (38)
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|---|---|---|---|---|
| US6362002B1 (en) | 1995-03-17 | 2002-03-26 | President And Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
| US20040152084A1 (en) * | 2003-01-31 | 2004-08-05 | Slattum Paul M. | Compounds and processes for single-pot attachment of a label to nucleic acid |
| WO1999005167A1 (en) | 1997-07-25 | 1999-02-04 | University Of Massachusetts | Designed protein pores as components for biosensors |
| DE60025739T2 (de) | 1999-09-07 | 2006-08-31 | The Regents Of The University Of California, Oakland | Verfahren um die anwesenheit von doppelsträngiger dns in einer probe nachzuweisen |
| AU2001241474A1 (en) | 2000-02-11 | 2001-08-20 | The Texas A And M University System | Biosensor compositions and methods of use |
| WO2003000920A2 (en) | 2001-06-21 | 2003-01-03 | President And Fellows Of Harvard College | Methods for characterization of nucleic acid molecules |
| AU2002365421A1 (en) | 2001-07-10 | 2003-09-02 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for detecting the activation state of the multiple proteins in single cells |
| US20050019784A1 (en) | 2002-05-20 | 2005-01-27 | Xing Su | Method and apparatus for nucleic acid sequencing and identification |
| ATE469135T1 (de) | 2002-05-30 | 2010-06-15 | Scripps Research Inst | Kupferkatalysierte ligierung von aziden und acetylenen |
| EP1648914A4 (en) | 2003-07-31 | 2009-12-16 | Regulus Therapeutics Inc | OLIGOMERIC COMPOUNDS AND COMPOSITIONS USEFUL FOR MODULATING SMALL NON-CODING RNA |
| US7846738B2 (en) | 2003-08-15 | 2010-12-07 | President And Fellows Of Harvard College | Study of polymer molecules and conformations with a nanopore |
| US20050136408A1 (en) | 2003-12-19 | 2005-06-23 | May Tom-Moy | Methods and systems for characterizing a polymer |
| EP1784754A4 (en) | 2004-08-13 | 2009-05-27 | Harvard College | OPTI-NANOPORE DNA READING PLATFORM WITH ULTRAHOLE THROUGHPUT |
| KR101159072B1 (ko) | 2005-01-20 | 2012-06-25 | 삼성전자주식회사 | 나노포어를 이용한 생분자의 분리방법 |
| KR100707198B1 (ko) | 2005-06-27 | 2007-04-13 | 삼성전자주식회사 | 나노포어 및 핵산에 비특이적으로 결합하는 물질을 이용한고감도 핵산 검출 방법 |
| WO2007041621A2 (en) | 2005-10-03 | 2007-04-12 | Xingsheng Sean Ling | Hybridization assisted nanopore sequencing |
| KR100730350B1 (ko) | 2005-10-17 | 2007-06-19 | 삼성전자주식회사 | 표면처리된 나노포어를 이용한 dna 검출방법 및검출장치 |
| EP1954838B1 (en) | 2005-11-14 | 2014-02-26 | Life Technologies Corporation | Coded molecules for detecting target analytes |
| WO2007117832A2 (en) | 2006-03-12 | 2007-10-18 | Applera Corporation | Methods of detecting target nucleic acids |
| US8314220B2 (en) | 2007-01-26 | 2012-11-20 | Agilent Technologies, Inc. | Methods compositions, and kits for detection of microRNA |
| WO2008097190A1 (en) | 2007-02-05 | 2008-08-14 | Agency For Science, Technology And Research | Methods of electrically detecting a nucleic acid by means of an electrode pair |
| AU2008236694B2 (en) | 2007-04-04 | 2014-01-23 | The Regents Of The University Of California | Compositions, devices, systems, and methods for using a nanopore |
| EP2158476B8 (en) | 2007-05-08 | 2019-10-09 | Trustees of Boston University | Chemical functionalization of solid-state nanopores and nanopore arrays and applications thereof |
| GB0713143D0 (en) | 2007-07-06 | 2007-08-15 | Ucl Business Plc | Nucleic acid detection method |
| EP2205765B1 (en) | 2007-10-02 | 2012-09-12 | President and Fellows of Harvard College | Capture, recapture, and trapping of molecules with a nanopore |
| US20090181390A1 (en) | 2008-01-11 | 2009-07-16 | Signosis, Inc. A California Corporation | High throughput detection of micrornas and use for disease diagnosis |
| US8852864B2 (en) | 2008-01-17 | 2014-10-07 | Sequenom Inc. | Methods and compositions for the analysis of nucleic acids |
| EP2107040B1 (en) | 2008-03-31 | 2011-10-26 | Sony Deutschland Gmbh | A method of fabricating a membrane having a tapered pore |
| US9447152B2 (en) | 2008-07-07 | 2016-09-20 | Oxford Nanopore Technologies Limited | Base-detecting pore |
| US20100099198A1 (en) | 2008-07-11 | 2010-04-22 | Board Of Regents, The University Of Texas System | Apparatus and system for pattern recognition sensing for biomolecules |
| US20100148126A1 (en) | 2008-11-26 | 2010-06-17 | Board Of Regents, The University Of Texas System | Genomic sequencing using modified protein pores and ionic liquids |
| US20110003703A1 (en) | 2009-07-01 | 2011-01-06 | Charles Ma | Nucleic Acid Hybridization and Detection Using Enzymatic Reactions on a Microarray |
| US9416409B2 (en) | 2009-07-31 | 2016-08-16 | Ibis Biosciences, Inc. | Capture primers and capture sequence linked solid supports for molecular diagnostic tests |
| WO2011028494A2 (en) | 2009-08-24 | 2011-03-10 | Trustees Of Boston University | Label-free sensing of pna-dna complexes using nanopores |
| US8324914B2 (en) | 2010-02-08 | 2012-12-04 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
| WO2011103424A2 (en) | 2010-02-19 | 2011-08-25 | The Trustees Of The University Of Pennsylvania | High-resolution analysis devices and related methods |
| CA2795042A1 (en) * | 2010-03-30 | 2011-10-13 | Trustees Of Boston University | Tools and method for nanopores unzipping-dependent nucleic acid sequencing |
| AU2013220156B2 (en) | 2012-02-15 | 2018-08-09 | Oxford Nanopore Technologies Limited | Aptamer method |
-
2014
- 2014-03-14 WO PCT/US2014/028528 patent/WO2014144217A1/en not_active Ceased
- 2014-03-14 US US14/213,140 patent/US9732379B2/en active Active
- 2014-03-14 JP JP2016502813A patent/JP2016517275A/ja active Pending
- 2014-03-14 AU AU2014227754A patent/AU2014227754B2/en active Active
- 2014-03-14 EP EP14762829.1A patent/EP2971118B1/en active Active
- 2014-03-14 CA CA2906007A patent/CA2906007C/en active Active
-
2017
- 2017-07-12 US US15/647,873 patent/US20180002742A1/en not_active Abandoned
Patent Citations (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JPS6434300A (en) * | 1987-04-28 | 1989-02-03 | Tamiile Biotechnol Ltd | Improved dna probe |
| JPH0195800A (ja) * | 1987-08-28 | 1989-04-13 | Profile Diagnostic Sci Inc | 遺伝子発現のアツセイ法及びキツト |
| JP2002538839A (ja) * | 1999-03-15 | 2002-11-19 | ピーイー コーポレイション (エヌワイ) | 多重核酸検出のためのプローブ/移動度モディファイア複合体 |
| JP2003527075A (ja) * | 1999-03-25 | 2003-09-16 | ハイセック,インコーポレーテッド | ハイブリダイゼーションによる配列分析のための、溶液ベースの方法 |
| JP2005517900A (ja) * | 2001-11-21 | 2005-06-16 | アプレラ コーポレイション | デジタルアッセイ |
| WO2011106583A1 (en) * | 2010-02-26 | 2011-09-01 | Ventana Medical Systems, Inc. | Polytag probes |
| WO2012009578A2 (en) * | 2010-07-14 | 2012-01-19 | The Curators Of The University Of Missouri | Nanopore-facilitated single molecule detection of nucleic acids |
| WO2012083249A2 (en) * | 2010-12-17 | 2012-06-21 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by synthesis using modified nucleotides and nanopore detection |
Non-Patent Citations (2)
| Title |
|---|
| NAT. NANOTECHNOL. (2012) VOL.6, NO.10, PP.668-674, JPN6018002997, ISSN: 0003952421 * |
| PNAS (2007) VOL.104, PP.8207-8211, JPN6018003000, ISSN: 0003952422 * |
Cited By (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2023062193A (ja) * | 2018-06-26 | 2023-05-02 | 国立大学法人東京農工大学 | 検査対象が小細胞肺がん又は胆管がんに罹患している又はそのリスクを有することを判定する方法、並びに、これらの判定方法に用いるためのプローブ及びプローブセット |
| JP7437824B2 (ja) | 2018-06-26 | 2024-02-26 | 国立大学法人東京農工大学 | 検査対象が小細胞肺がん又は胆管がんに罹患している又はそのリスクを有することを判定する方法、並びに、これらの判定方法に用いるためのプローブ及びプローブセット |
Also Published As
| Publication number | Publication date |
|---|---|
| EP2971118B1 (en) | 2019-10-02 |
| US20140309129A1 (en) | 2014-10-16 |
| CA2906007C (en) | 2022-06-21 |
| WO2014144217A1 (en) | 2014-09-18 |
| AU2014227754B2 (en) | 2018-03-01 |
| EP2971118A1 (en) | 2016-01-20 |
| AU2014227754A1 (en) | 2015-10-01 |
| EP2971118A4 (en) | 2016-11-16 |
| US9732379B2 (en) | 2017-08-15 |
| CA2906007A1 (en) | 2014-09-18 |
| US20180002742A1 (en) | 2018-01-04 |
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