JP2012531211A5 - - Google Patents

Download PDF

Info

Publication number
JP2012531211A5
JP2012531211A5 JP2012517804A JP2012517804A JP2012531211A5 JP 2012531211 A5 JP2012531211 A5 JP 2012531211A5 JP 2012517804 A JP2012517804 A JP 2012517804A JP 2012517804 A JP2012517804 A JP 2012517804A JP 2012531211 A5 JP2012531211 A5 JP 2012531211A5
Authority
JP
Japan
Prior art keywords
probe
otu
sample
nucleic acid
signal intensity
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2012517804A
Other languages
English (en)
Japanese (ja)
Other versions
JP2012531211A (ja
JP5795579B2 (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/US2010/040106 external-priority patent/WO2010151842A2/en
Publication of JP2012531211A publication Critical patent/JP2012531211A/ja
Publication of JP2012531211A5 publication Critical patent/JP2012531211A5/ja
Application granted granted Critical
Publication of JP5795579B2 publication Critical patent/JP5795579B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2012517804A 2009-06-26 2010-06-25 系統発生分析のための方法およびシステム Active JP5795579B2 (ja)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US22093709P 2009-06-26 2009-06-26
US61/220,937 2009-06-26
US25956509P 2009-11-09 2009-11-09
US61/259,565 2009-11-09
US31764410P 2010-03-25 2010-03-25
US61/317,644 2010-03-25
US34781710P 2010-05-24 2010-05-24
US61/347,817 2010-05-24
PCT/US2010/040106 WO2010151842A2 (en) 2009-06-26 2010-06-25 Methods and systems for phylogenetic analysis

Publications (3)

Publication Number Publication Date
JP2012531211A JP2012531211A (ja) 2012-12-10
JP2012531211A5 true JP2012531211A5 (https=) 2013-08-08
JP5795579B2 JP5795579B2 (ja) 2015-10-14

Family

ID=43387153

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2012517804A Active JP5795579B2 (ja) 2009-06-26 2010-06-25 系統発生分析のための方法およびシステム

Country Status (7)

Country Link
US (2) US20120165215A1 (https=)
EP (1) EP2446062B1 (https=)
JP (1) JP5795579B2 (https=)
CA (1) CA2766312C (https=)
DK (1) DK2446062T3 (https=)
SG (1) SG177366A1 (https=)
WO (1) WO2010151842A2 (https=)

Families Citing this family (75)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009045670A1 (en) * 2007-10-05 2009-04-09 Exxonmobil Upstream Research Company Method and apparatus for detection of a liquid under a surface
US9228240B2 (en) 2010-06-03 2016-01-05 California Institute Of Technology Methods for detecting and quantifying viable bacterial endo-spores
EP3733867A1 (en) * 2011-01-17 2020-11-04 Life Technologies Corporation Enzymatic ligation of nucleic acids
EP3567121B1 (en) 2011-01-17 2023-08-30 Life Technologies Corporation Workflow for detection of ligands using nucleic acids
US8712712B2 (en) * 2011-03-29 2014-04-29 Bio-Rad Laboratories, Inc. System and method for producing statistically valid assay means and ranges for quality control materials
JP5877902B2 (ja) 2011-08-17 2016-03-08 マイクロバイオーム セラピューティクス,エルエルシー バクテロイデス門の胃腸管微生物相対フィルミクテス門の微生物相の比を上昇させるための組成物および製剤の使用
EP2776872B1 (en) 2011-11-11 2020-01-08 Exxonmobil Upstream Research Company Exploration method and system for detection of hydrocarbons with an underwater vehicle
RU2613219C2 (ru) 2011-11-11 2017-03-15 Эксонмобил Апстрим Рисерч Компани Способ наблюдения за коллектором с использованием данных о скученных изотопах и/или инертных газах
FR2985519B1 (fr) * 2012-01-10 2016-02-19 Biomerieux Sa Procede de detection et d'identification directe par voie optique d'un microorganisme dans un echantillon biologique
US9725770B2 (en) * 2012-03-06 2017-08-08 The Regents Of The University Of California Methods and compositions for identification of source of microbial contamination in a sample
US9092401B2 (en) 2012-10-31 2015-07-28 Counsyl, Inc. System and methods for detecting genetic variation
AU2013292610B2 (en) 2012-07-17 2018-05-17 Myriad Women's Health, Inc. System and methods for detecting genetic variation
JP2014023434A (ja) * 2012-07-24 2014-02-06 Lotte Co Ltd デンタルプラークの細菌叢の解析方法
DK3435084T3 (da) * 2012-08-16 2023-05-30 Mayo Found Medical Education & Res Prostatakræftprognose under anvendelse af biomarkører
CA3212215A1 (en) 2012-11-23 2014-05-30 Seres Therapeutics, Inc. Synergistic bacterial compositions and methods of production and use thereof
US8906668B2 (en) 2012-11-23 2014-12-09 Seres Health, Inc. Synergistic bacterial compositions and methods of production and use thereof
US20140179554A1 (en) * 2012-12-21 2014-06-26 Hutman Diagnostics AG Microarrays
WO2014107619A1 (en) 2013-01-04 2014-07-10 Second Genome, Inc. Microbiome modulation index
CA2899925A1 (en) 2013-02-04 2014-08-07 Seres Therapeutics, Inc. Compositions and methods for inhibition of pathogenic bacterial growth
HK1218560A1 (zh) 2013-02-04 2017-02-24 Seres Therapeutics, Inc. 组成与方法
WO2014159287A1 (en) 2013-03-14 2014-10-02 Second Genome, Inc. Microbial ecology shift assay
EP2967077A4 (en) 2013-03-15 2016-09-14 Seres Therapeutics Inc NETWORK-BASED MICROBIAL COMPOSITIONS AND METHOD
WO2014152281A2 (en) * 2013-03-15 2014-09-25 The Broad Institute, Inc. Ribosomal ribonucleic acid hybridization for organism identification
US10023504B2 (en) 2013-05-15 2018-07-17 John Hulls Composting system and method
EP3074027B1 (en) 2013-11-25 2024-12-18 Seres Therapeutics, Inc. Synergistic bacterial compositions and methods of production and use thereof
CA2929291C (en) 2013-12-04 2019-07-09 Exxonmobil Upstream Research Company Method and system for detection of a material within a region of the earth
US9956282B2 (en) 2013-12-16 2018-05-01 Seres Therapeutics, Inc. Bacterial compositions and methods of use thereof for treatment of immune system disorders
WO2015103165A1 (en) * 2013-12-31 2015-07-09 Biota Technology, Inc. Microbiome based systems, apparatus and methods for monitoring and controlling industrial processes and systems
US11028449B2 (en) 2013-12-31 2021-06-08 Biota Technology, Inc. Microbiome based systems, apparatus and methods for monitoring and controlling industrial processes and systems
US11047232B2 (en) 2013-12-31 2021-06-29 Biota Technology, Inc Microbiome based systems, apparatus and methods for the exploration and production of hydrocarbons
US9387451B2 (en) 2014-02-03 2016-07-12 International Business Machines Corporation Flow cell array and uses thereof
AU2014385229B2 (en) 2014-03-07 2017-04-20 Exxonmobil Upstream Research Company Exploration method and system for detection of hydrocarbons from the water column
EP3129503A4 (en) * 2014-04-11 2018-02-21 The Trustees Of The University Of Pennsylvania Compositions and methods for metagenome biomarker detection
EP3140313B1 (en) * 2014-05-04 2020-02-26 Salix Pharmaceuticals, Inc. Ibs microbiota and uses thereof
US20170081707A1 (en) * 2014-05-06 2017-03-23 Phylagen, Inc. Monitoring and managing a facility microbiome
US9638828B2 (en) 2014-07-18 2017-05-02 Exxonmobil Upstream Research Company Method and system for performing surveying and sampling in a body of water
US9453828B2 (en) 2014-07-18 2016-09-27 Exxonmobil Upstream Research Company Method and system for identifying and sampling hydrocarbons with buoys
US9829602B2 (en) 2014-07-18 2017-11-28 Exxonmobil Upstream Research Company Method and system for identifying and sampling hydrocarbons
US10410749B2 (en) 2014-10-21 2019-09-10 uBiome, Inc. Method and system for microbiome-derived characterization, diagnostics and therapeutics for cutaneous conditions
AU2015335907A1 (en) 2014-10-21 2017-04-13 Psomagen, Inc. Method and system for microbiome-derived diagnostics and therapeutics
JP6514549B2 (ja) * 2015-04-03 2019-05-15 住友化学株式会社 微生物叢解析システム、判定システム、微生物叢解析方法及び判定方法
AU2016250100A1 (en) * 2015-04-13 2017-11-09 Psomagen, Inc. Method and system for microbiome-derived characterization, diagnostics and therapeutics for cutaneous conditions
JP6643815B2 (ja) * 2015-05-15 2020-02-12 森永乳業株式会社 腸内状態の判定方法、および腸内状態の判定装置
US20180357365A1 (en) * 2015-10-02 2018-12-13 Phylagen, Inc. Product authentication and tracking
US10724108B2 (en) 2016-05-31 2020-07-28 Exxonmobil Upstream Research Company Methods for isolating nucleic acids from samples
US10496695B2 (en) * 2016-06-06 2019-12-03 Think-Cell Software Gmbh Automated data extraction from scatter plot images
WO2017214557A1 (en) 2016-06-10 2017-12-14 Counsyl, Inc. Nucleic acid sequencing adapters and uses thereof
US10895666B2 (en) 2016-07-01 2021-01-19 Exxonmobil Upstream Research Company Methods for identifying hydrocarbon reservoirs
US20180030403A1 (en) 2016-07-28 2018-02-01 Bobban Subhadra Devices, systems and methods for the production of humanized gut commensal microbiota
US11959125B2 (en) * 2016-09-15 2024-04-16 Sun Genomics, Inc. Universal method for extracting nucleic acid molecules from a diverse population of one or more types of microbes in a sample
EP3518974A4 (en) 2016-09-29 2020-05-27 Myriad Women's Health, Inc. NON-INVASIVE PRENATAL SCREENING USING DYNAMIC ITERATIVE DEEP OPTIMIZATION
US11015154B2 (en) 2016-11-09 2021-05-25 The Regents Of The University Of California Methods for identifying interactions amongst microorganisms
US10752946B2 (en) 2017-01-31 2020-08-25 Myriad Women's Health, Inc. Methods and compositions for enrichment of target polynucleotides
US10968447B2 (en) 2017-01-31 2021-04-06 Myriad Women's Health, Inc. Methods and compositions for enrichment of target polynucleotides
EP3602359A4 (en) 2017-03-24 2021-01-06 Myriad Women's Health, Inc. COPY NUMBER VARIANT CALLER
EP3668527A1 (en) 2017-08-14 2020-06-24 Seres Therapeutics, Inc. Compositions and methods for treating cholestatic disease
WO2019084245A1 (en) 2017-10-27 2019-05-02 Myriad Women's Health, Inc. METHODS AND COMPOSITIONS FOR PREPARING NUCLEIC ACID LIBRARIES
JP2021501185A (ja) 2017-10-30 2021-01-14 セレス セラピューティクス インコーポレイテッド 抗生物質耐性を処置するための組成物及び方法
JP6995604B2 (ja) * 2017-12-15 2022-01-14 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット
CN109935376B (zh) * 2017-12-18 2022-06-28 中国核动力研究设计院 一种核电厂严重事故下β射线对仪表损伤的量化方法
US11525164B2 (en) 2018-03-27 2022-12-13 The Trustees Of Columbia University In The City Of New York Spatial metagenomic characterization of microbial biogeography
CN109113732B (zh) * 2018-08-09 2022-03-29 中国石油天然气股份有限公司 储层非均质性的确定方法及装置
CN109270032B (zh) * 2018-08-20 2021-08-20 杭州腾海科技有限公司 一种水体藻类在线监测装置
CN109273053B (zh) * 2018-09-27 2021-10-08 华中科技大学鄂州工业技术研究院 一种高通量测序的微生物数据处理方法
WO2020245785A2 (en) * 2019-06-06 2020-12-10 Tata Consultancy Services Limited Method and system for identification of candidate target sites for combating pathogens
CN110484637B (zh) * 2019-09-19 2020-06-09 南京大学 一种水体粪便污染检测的引物、试剂盒及高通量溯源方法
US10942165B1 (en) * 2019-12-20 2021-03-09 Dnae Group Holdings Ltd Methods for preparing cartridges for in vitro diagnostics and related systems
KR102676313B1 (ko) * 2020-02-27 2024-06-17 경희대학교 산학협력단 유전자 선별 방법 및 장치
CN111477276B (zh) * 2020-04-02 2020-12-15 上海之江生物科技股份有限公司 微生物的种特异共有序列的获得方法、装置及应用
CN111847778A (zh) * 2020-07-15 2020-10-30 北京天诚众合科技发展有限公司 一种景观水体、坑塘治理维护的方法
JP7414029B2 (ja) * 2021-02-26 2024-01-16 横河電機株式会社 測定方法及び測定システム
CN113096734B (zh) * 2021-05-11 2021-12-14 中国科学院水生生物研究所 一种筛选用于二倍体群体亲子鉴定的分子标记组合的方法
CN117473398B (zh) * 2023-12-26 2024-03-19 四川国蓝中天环境科技集团有限公司 一种基于运渣车活动的城市扬尘污染源分类方法
CN117497065B (zh) * 2023-12-28 2024-04-02 中国农业大学 筛选促进多年生牧草再生的微生物种类的方法及其所用装置与计算机可读存储介质
WO2025174923A1 (en) * 2024-02-13 2025-08-21 The Children's Medical Center Corporation Methods for mapping immune cell clones in situ

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7115364B1 (en) * 1993-10-26 2006-10-03 Affymetrix, Inc. Arrays of nucleic acid probes on biological chips
AU1337099A (en) * 1997-10-29 1999-05-17 Mira Diagnostica Gmbh Method for identifying micro-organisms
US7955794B2 (en) * 2000-09-21 2011-06-07 Illumina, Inc. Multiplex nucleic acid reactions
US20020187490A1 (en) * 2001-06-07 2002-12-12 Michigan State University Microbial identification chip based on DNA-DNA hybridization
CA2469561A1 (en) * 2001-12-11 2003-06-19 Thomas R. Gingeras Methods for determining transcriptional activity
JP2004357550A (ja) * 2003-06-03 2004-12-24 Sankyo Co Ltd 遺伝子発現データの解析方法
US20050112636A1 (en) * 2003-09-23 2005-05-26 Atom Sciences Polymeric nucleic acid hybridization probes
US7323308B2 (en) * 2004-09-03 2008-01-29 Affymetrix, Inc. Methods of genetic analysis of E. coli
AU2005335216A1 (en) * 2004-10-05 2007-02-15 Wyeth Probe arrays for detecting multiple strains of different species
JP2007060953A (ja) * 2005-08-30 2007-03-15 Hitachi Ltd 細菌叢の分析方法
EP1770171A1 (en) * 2005-09-29 2007-04-04 Universität Zu Köln DNA microarray for rapid identification of Candida albicans in blood cultures.
US20070269813A1 (en) * 2005-11-03 2007-11-22 Dewhirst Floyd E Methods and arrays for identifying human microflora
US20070122831A1 (en) * 2005-11-12 2007-05-31 Dave Bachoon Detection and source identification of microbial contaminants in water samples
KR100813263B1 (ko) * 2006-08-17 2008-03-13 삼성전자주식회사 표적 서열 검출용 프로브 설계 방법 및 상기 프로브를이용한 표적 서열 검출 방법
DK2099935T3 (da) * 2006-11-30 2014-04-07 Univ California Array for detektion af mikrober
US8080372B2 (en) * 2007-04-11 2011-12-20 Canon Kabushiki Kaisha Method for detecting nucleic acid in sample, method for designing probes, system for designing probes therefor

Similar Documents

Publication Publication Date Title
JP2012531211A5 (https=)
JP6721642B2 (ja) Dnaのサイズに基づく解析
Kandimalla et al. Genome-wide analysis of CpG island methylation in bladder cancer identified TBX2, TBX3, GATA2, and ZIC4 as pTa-specific prognostic markers
Tan et al. Expression profile of MicroRNAs in young stroke patients
Feng et al. Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic
HRP20210716T1 (hr) Neinvazivno određivanje metiloma tumora iz plazme
Pizzamiglio et al. A methodological procedure for evaluating the impact of hemolysis on circulating microRNAs
Treff et al. Four-hour quantitative real-time polymerase chain reaction–based comprehensive chromosome screening and accumulating evidence of accuracy, safety, predictive value, and clinical efficacy
RU2017125417A (ru) Обнаружение изменений конформации полимеразы нуклеиновых кислот с помощью нанотрубки
IL315032A (en) Analysis of cell-free dna in urine and other samples
WO2008070144A3 (en) Imprinted genes and disease
BR112018015913A2 (pt) método para determinar uma variação no número de cópia de uma sequência de ácido nucleico de interesse, e, sistema para avaliar o número de cópia de uma sequência de ácido nucleico de interesse.
WO2009134452A3 (en) Preterm delivery diagnostic assay
JP2015511122A5 (https=)
WO2010151842A3 (en) Methods and systems for phylogenetic analysis
Su et al. Conservation and divergence of DNA methylation in eukaryotes: new insights from single base-resolution DNA methylomes
WO2010104345A3 (ko) 실시간 핵산 분석 통합 장치 및 이를 이용한 타겟 핵산의 검출방법
CN103305618A (zh) 一种遗传代谢疾病基因的筛查方法
MX2012002411A (es) Metodos de ensayo para el mdv-1.
JP2013503617A5 (https=)
JP2013528052A5 (https=)
IN2014DN06516A (https=)
WO2011019533A3 (en) Nucleotide capacitance measurement for low cost dna sequencing
Foord et al. Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses
Esposito et al. Partial comparison of the NxTAG respiratory pathogen panel assay with the Luminex xTAG respiratory panel fast assay V2 and singleplex real-time polymerase chain reaction for detection of respiratory pathogens