CA2766312C - Methods and systems for phylogenetic analysis - Google Patents

Methods and systems for phylogenetic analysis Download PDF

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CA2766312C
CA2766312C CA2766312A CA2766312A CA2766312C CA 2766312 C CA2766312 C CA 2766312C CA 2766312 A CA2766312 A CA 2766312A CA 2766312 A CA2766312 A CA 2766312A CA 2766312 C CA2766312 C CA 2766312C
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probes
bacteria
probe
sample
otus
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CA2766312A1 (en
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Gary L. Andersen
Todd Z. De Santis
Eoin Brodie
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University of California San Diego UCSD
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA2766312A 2009-06-26 2010-06-25 Methods and systems for phylogenetic analysis Active CA2766312C (en)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US22093709P 2009-06-26 2009-06-26
US61/220,937 2009-06-26
US25956509P 2009-11-09 2009-11-09
US61/259,565 2009-11-09
US31764410P 2010-03-25 2010-03-25
US61/317,644 2010-03-25
US34781710P 2010-05-24 2010-05-24
US61/347,817 2010-05-24
PCT/US2010/040106 WO2010151842A2 (en) 2009-06-26 2010-06-25 Methods and systems for phylogenetic analysis

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CA2766312A1 CA2766312A1 (en) 2010-12-29
CA2766312C true CA2766312C (en) 2020-04-14

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CA2766312A Active CA2766312C (en) 2009-06-26 2010-06-25 Methods and systems for phylogenetic analysis

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US (2) US20120165215A1 (https=)
EP (1) EP2446062B1 (https=)
JP (1) JP5795579B2 (https=)
CA (1) CA2766312C (https=)
DK (1) DK2446062T3 (https=)
SG (1) SG177366A1 (https=)
WO (1) WO2010151842A2 (https=)

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CA2766312A1 (en) 2010-12-29
WO2010151842A3 (en) 2011-03-03
EP2446062A2 (en) 2012-05-02
WO2010151842A2 (en) 2010-12-29
US20120165215A1 (en) 2012-06-28
JP2012531211A (ja) 2012-12-10
SG177366A1 (en) 2012-02-28
JP5795579B2 (ja) 2015-10-14
DK2446062T3 (da) 2014-10-06
EP2446062B1 (en) 2014-08-13
US20180223339A1 (en) 2018-08-09
EP2446062A4 (en) 2013-03-20

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