DK2446062T3 - Fremgangsmåder og systemer til phylogenetisk analyse - Google Patents

Fremgangsmåder og systemer til phylogenetisk analyse

Info

Publication number
DK2446062T3
DK2446062T3 DK10792771.7T DK10792771T DK2446062T3 DK 2446062 T3 DK2446062 T3 DK 2446062T3 DK 10792771 T DK10792771 T DK 10792771T DK 2446062 T3 DK2446062 T3 DK 2446062T3
Authority
DK
Denmark
Prior art keywords
systems
methods
phylogenetic analysis
phylogenetic
analysis
Prior art date
Application number
DK10792771.7T
Other languages
English (en)
Inventor
Gary L Andersen
Todd Z Desantis
Eoin Brodie
Original Assignee
Univ California
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ California filed Critical Univ California
Application granted granted Critical
Publication of DK2446062T3 publication Critical patent/DK2446062T3/da

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation
DK10792771.7T 2009-06-26 2010-06-25 Fremgangsmåder og systemer til phylogenetisk analyse DK2446062T3 (da)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US22093709P 2009-06-26 2009-06-26
US25956509P 2009-11-09 2009-11-09
US31764410P 2010-03-25 2010-03-25
US34781710P 2010-05-24 2010-05-24
PCT/US2010/040106 WO2010151842A2 (en) 2009-06-26 2010-06-25 Methods and systems for phylogenetic analysis

Publications (1)

Publication Number Publication Date
DK2446062T3 true DK2446062T3 (da) 2014-10-06

Family

ID=43387153

Family Applications (1)

Application Number Title Priority Date Filing Date
DK10792771.7T DK2446062T3 (da) 2009-06-26 2010-06-25 Fremgangsmåder og systemer til phylogenetisk analyse

Country Status (7)

Country Link
US (2) US20120165215A1 (da)
EP (1) EP2446062B1 (da)
JP (1) JP5795579B2 (da)
CA (1) CA2766312C (da)
DK (1) DK2446062T3 (da)
SG (1) SG177366A1 (da)
WO (1) WO2010151842A2 (da)

Families Citing this family (70)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2700749C (en) * 2007-10-05 2016-03-22 Exxonmobil Upstream Research Company Method and apparatus for detection of a liquid under a surface
US9228240B2 (en) 2010-06-03 2016-01-05 California Institute Of Technology Methods for detecting and quantifying viable bacterial endo-spores
ES2645953T3 (es) * 2011-01-17 2017-12-11 Life Technologies Corporation Ligamiento enzimático de ácidos nucleicos
EP2665833B1 (en) 2011-01-17 2017-04-19 Life Technologies Corporation Workflow for detection of ligands using nucleic acids
US8712712B2 (en) * 2011-03-29 2014-04-29 Bio-Rad Laboratories, Inc. System and method for producing statistically valid assay means and ranges for quality control materials
CA2878005C (en) 2011-08-17 2020-03-10 Microbiome Therapeutics, Llc Composition and use of a formulation to increase the ratio of gastrointestinal microbiota in phylum bacteriodetes to microbiota of firmicutes phylum
US10309217B2 (en) 2011-11-11 2019-06-04 Exxonmobil Upstream Research Company Method and system for reservoir surveillance utilizing a clumped isotope and/or noble gas data
WO2013071188A1 (en) 2011-11-11 2013-05-16 Exxonmobil Upstream Research Company Method for determining the location, size, and fluid composition of a subsurface hydrocarbon accumulation
FR2985519B1 (fr) * 2012-01-10 2016-02-19 Biomerieux Sa Procede de detection et d'identification directe par voie optique d'un microorganisme dans un echantillon biologique
US9725770B2 (en) * 2012-03-06 2017-08-08 The Regents Of The University Of California Methods and compositions for identification of source of microbial contamination in a sample
CN104812947B (zh) 2012-07-17 2018-04-27 考希尔股份有限公司 检测遗传变异的系统和方法
US9092401B2 (en) 2012-10-31 2015-07-28 Counsyl, Inc. System and methods for detecting genetic variation
JP2014023434A (ja) * 2012-07-24 2014-02-06 Lotte Co Ltd デンタルプラークの細菌叢の解析方法
US8906668B2 (en) 2012-11-23 2014-12-09 Seres Health, Inc. Synergistic bacterial compositions and methods of production and use thereof
WO2014100626A1 (en) * 2012-12-21 2014-06-26 Hutman Diagnostics AG Microarrays
WO2014107619A1 (en) 2013-01-04 2014-07-10 Second Genome, Inc. Microbiome modulation index
EP3904502A3 (en) 2013-02-04 2022-02-23 Seres Therapeutics, Inc. Compositions and methods
EP2956006A4 (en) 2013-02-04 2017-02-22 Seres Therapeutics, Inc. Methods of populating a gastrointestinal tract
CA2899808A1 (en) 2013-03-14 2014-10-02 Second Genome, Inc. Microbial ecology shift assay
EP2967077A4 (en) 2013-03-15 2016-09-14 Seres Therapeutics Inc MICROBIAL COMPOSITIONS AND ASSOCIATED METHODS BASED ON A NETWORK
US11441196B2 (en) * 2013-03-15 2022-09-13 The Broad Institute, Inc. Ribosomal ribonucleic acid hybridization for organism identification
WO2014186471A1 (en) * 2013-05-15 2014-11-20 John Hulls Composting system and method
EP3074027A1 (en) 2013-11-25 2016-10-05 Seres Therapeutics, Inc. Synergistic bacterial compositions and methods of production and use thereof
WO2015084347A1 (en) 2013-12-04 2015-06-11 Exxonmobil Upstream Research Company Method and system for detection of a material within a region of the earth
EP3082431A4 (en) 2013-12-16 2017-11-15 Seres Therapeutics, Inc. Bacterial compositions and methods of use thereof for treatment of immune system disorders
US11047232B2 (en) 2013-12-31 2021-06-29 Biota Technology, Inc Microbiome based systems, apparatus and methods for the exploration and production of hydrocarbons
WO2015103165A1 (en) * 2013-12-31 2015-07-09 Biota Technology, Inc. Microbiome based systems, apparatus and methods for monitoring and controlling industrial processes and systems
US11028449B2 (en) 2013-12-31 2021-06-08 Biota Technology, Inc. Microbiome based systems, apparatus and methods for monitoring and controlling industrial processes and systems
US9387451B2 (en) 2014-02-03 2016-07-12 International Business Machines Corporation Flow cell array and uses thereof
AU2014385229B2 (en) 2014-03-07 2017-04-20 Exxonmobil Upstream Research Company Exploration method and system for detection of hydrocarbons from the water column
AU2015243238A1 (en) * 2014-04-11 2016-10-27 The Trustees Of The University Of Pennsylvania Compositions and methods for metagenome biomarker detection
CA2947962C (en) * 2014-05-04 2024-01-16 Salix Pharmaceuticals, Inc. Ibs microbiota and uses thereof
WO2015171834A1 (en) * 2014-05-06 2015-11-12 Phylagen, Inc. Monitoring and managing a facility microbiome
US9638828B2 (en) 2014-07-18 2017-05-02 Exxonmobil Upstream Research Company Method and system for performing surveying and sampling in a body of water
AU2015290137B2 (en) 2014-07-18 2018-03-01 Exxonmobil Upstream Research Company Method and system for identifying and sampling hydrocarbons
US9453828B2 (en) 2014-07-18 2016-09-27 Exxonmobil Upstream Research Company Method and system for identifying and sampling hydrocarbons with buoys
US10410749B2 (en) 2014-10-21 2019-09-10 uBiome, Inc. Method and system for microbiome-derived characterization, diagnostics and therapeutics for cutaneous conditions
AU2015335907A1 (en) 2014-10-21 2017-04-13 Psomagen, Inc. Method and system for microbiome-derived diagnostics and therapeutics
JP6514549B2 (ja) * 2015-04-03 2019-05-15 住友化学株式会社 微生物叢解析システム、判定システム、微生物叢解析方法及び判定方法
WO2016168350A1 (en) * 2015-04-13 2016-10-20 uBiome, Inc. Method and system for microbiome-derived characterization, diagnostics and therapeutics for cutaneous conditions
JP6643815B2 (ja) * 2015-05-15 2020-02-12 森永乳業株式会社 腸内状態の判定方法、および腸内状態の判定装置
US20180357365A1 (en) * 2015-10-02 2018-12-13 Phylagen, Inc. Product authentication and tracking
US10724108B2 (en) 2016-05-31 2020-07-28 Exxonmobil Upstream Research Company Methods for isolating nucleic acids from samples
US10496695B2 (en) * 2016-06-06 2019-12-03 Think-Cell Software Gmbh Automated data extraction from scatter plot images
WO2017214557A1 (en) 2016-06-10 2017-12-14 Counsyl, Inc. Nucleic acid sequencing adapters and uses thereof
WO2018005517A1 (en) 2016-07-01 2018-01-04 Exxonmobil Upstream Research Company Methods to determine conditions of a hydrocarbon reservoir
US20180030403A1 (en) 2016-07-28 2018-02-01 Bobban Subhadra Devices, systems and methods for the production of humanized gut commensal microbiota
EP3518974A4 (en) 2016-09-29 2020-05-27 Myriad Women's Health, Inc. NON-INVASIVE PRENATAL SCREENING USING DYNAMIC ITERATIVE DEEP OPTIMIZATION
US11015154B2 (en) 2016-11-09 2021-05-25 The Regents Of The University Of California Methods for identifying interactions amongst microorganisms
US10752946B2 (en) 2017-01-31 2020-08-25 Myriad Women's Health, Inc. Methods and compositions for enrichment of target polynucleotides
US10968447B2 (en) 2017-01-31 2021-04-06 Myriad Women's Health, Inc. Methods and compositions for enrichment of target polynucleotides
CA3057589A1 (en) 2017-03-24 2018-09-27 Counsyl, Inc. Copy number variant caller
CA3072206A1 (en) 2017-08-14 2019-02-21 Seres Therapeutics, Inc. Compositions and methods for treating cholestatic disease
WO2019084245A1 (en) 2017-10-27 2019-05-02 Myriad Women's Health, Inc. METHODS AND COMPOSITIONS FOR PREPARING NUCLEIC ACID LIBRARIES
JP6995604B2 (ja) * 2017-12-15 2022-01-14 東洋鋼鈑株式会社 一塩基多型検出用プローブの設計方法及びプローブセット
CN109935376B (zh) * 2017-12-18 2022-06-28 中国核动力研究设计院 一种核电厂严重事故下β射线对仪表损伤的量化方法
US11525164B2 (en) 2018-03-27 2022-12-13 The Trustees Of Columbia University In The City Of New York Spatial metagenomic characterization of microbial biogeography
CN109113732B (zh) * 2018-08-09 2022-03-29 中国石油天然气股份有限公司 储层非均质性的确定方法及装置
CN109270032B (zh) * 2018-08-20 2021-08-20 杭州腾海科技有限公司 一种水体藻类在线监测装置
CN109273053B (zh) * 2018-09-27 2021-10-08 华中科技大学鄂州工业技术研究院 一种高通量测序的微生物数据处理方法
WO2020245785A2 (en) * 2019-06-06 2020-12-10 Tata Consultancy Services Limited Method and system for identification of candidate target sites for combating pathogens
CN110484637B (zh) * 2019-09-19 2020-06-09 南京大学 一种水体粪便污染检测的引物、试剂盒及高通量溯源方法
US10942165B1 (en) * 2019-12-20 2021-03-09 Dnae Group Holdings Ltd Methods for preparing cartridges for in vitro diagnostics and related systems
KR20210109207A (ko) * 2020-02-27 2021-09-06 경희대학교 산학협력단 유전자 선별 방법 및 장치
CN111477276B (zh) 2020-04-02 2020-12-15 上海之江生物科技股份有限公司 微生物的种特异共有序列的获得方法、装置及应用
CN111847778A (zh) * 2020-07-15 2020-10-30 北京天诚众合科技发展有限公司 一种景观水体、坑塘治理维护的方法
JP7414029B2 (ja) * 2021-02-26 2024-01-16 横河電機株式会社 測定方法及び測定システム
CN113096734B (zh) * 2021-05-11 2021-12-14 中国科学院水生生物研究所 一种筛选用于二倍体群体亲子鉴定的分子标记组合的方法
CN117473398B (zh) * 2023-12-26 2024-03-19 四川国蓝中天环境科技集团有限公司 一种基于运渣车活动的城市扬尘污染源分类方法
CN117497065B (zh) * 2023-12-28 2024-04-02 中国农业大学 筛选促进多年生牧草再生的微生物种类的方法及其所用装置与计算机可读存储介质

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7115364B1 (en) * 1993-10-26 2006-10-03 Affymetrix, Inc. Arrays of nucleic acid probes on biological chips
WO1999022023A2 (de) * 1997-10-29 1999-05-06 Mira Diagnostica Gmbh Verfahren zum nachweis von mikroorganismen
US7955794B2 (en) * 2000-09-21 2011-06-07 Illumina, Inc. Multiplex nucleic acid reactions
US20020187490A1 (en) * 2001-06-07 2002-12-12 Michigan State University Microbial identification chip based on DNA-DNA hybridization
JP2005512527A (ja) * 2001-12-11 2005-05-12 アフィメトリックス インコーポレイテッド 転写活性を決定するための方法
JP2004357550A (ja) * 2003-06-03 2004-12-24 Sankyo Co Ltd 遺伝子発現データの解析方法
WO2005030929A2 (en) * 2003-09-23 2005-04-07 Atom Sciences, Inc. Polymeric nucleic acid hybridization probes
US7323308B2 (en) * 2004-09-03 2008-01-29 Affymetrix, Inc. Methods of genetic analysis of E. coli
EP1817432A2 (en) * 2004-10-05 2007-08-15 Wyeth a Corporation of the State of Delaware Probe arrays for detecting multiple strains of different species
JP2007060953A (ja) * 2005-08-30 2007-03-15 Hitachi Ltd 細菌叢の分析方法
EP1770171A1 (en) * 2005-09-29 2007-04-04 Universität Zu Köln DNA microarray for rapid identification of Candida albicans in blood cultures.
US20070269813A1 (en) * 2005-11-03 2007-11-22 Dewhirst Floyd E Methods and arrays for identifying human microflora
US20070122831A1 (en) * 2005-11-12 2007-05-31 Dave Bachoon Detection and source identification of microbial contaminants in water samples
KR100813263B1 (ko) * 2006-08-17 2008-03-13 삼성전자주식회사 표적 서열 검출용 프로브 설계 방법 및 상기 프로브를이용한 표적 서열 검출 방법
WO2008130394A2 (en) * 2006-11-30 2008-10-30 The Regents Of The University Of California Array for detecting microbes
US8080372B2 (en) * 2007-04-11 2011-12-20 Canon Kabushiki Kaisha Method for detecting nucleic acid in sample, method for designing probes, system for designing probes therefor

Also Published As

Publication number Publication date
EP2446062A2 (en) 2012-05-02
CA2766312A1 (en) 2010-12-29
JP2012531211A (ja) 2012-12-10
US20180223339A1 (en) 2018-08-09
SG177366A1 (en) 2012-02-28
EP2446062A4 (en) 2013-03-20
WO2010151842A3 (en) 2011-03-03
EP2446062B1 (en) 2014-08-13
US20120165215A1 (en) 2012-06-28
CA2766312C (en) 2020-04-14
WO2010151842A2 (en) 2010-12-29
JP5795579B2 (ja) 2015-10-14

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