DK2099935T3 - Array for detektion af mikrober - Google Patents

Array for detektion af mikrober

Info

Publication number
DK2099935T3
DK2099935T3 DK07874524.7T DK07874524T DK2099935T3 DK 2099935 T3 DK2099935 T3 DK 2099935T3 DK 07874524 T DK07874524 T DK 07874524T DK 2099935 T3 DK2099935 T3 DK 2099935T3
Authority
DK
Denmark
Prior art keywords
microbes
array
detection
Prior art date
Application number
DK07874524.7T
Other languages
English (en)
Inventor
Gary L Andersen
Todd Z Desantis
Original Assignee
Univ California
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ California filed Critical Univ California
Application granted granted Critical
Publication of DK2099935T3 publication Critical patent/DK2099935T3/da

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
DK07874524.7T 2006-11-30 2007-11-29 Array for detektion af mikrober DK2099935T3 (da)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US86183406P 2006-11-30 2006-11-30
PCT/US2007/024720 WO2008130394A2 (en) 2006-11-30 2007-11-29 Array for detecting microbes

Publications (1)

Publication Number Publication Date
DK2099935T3 true DK2099935T3 (da) 2014-04-07

Family

ID=39876099

Family Applications (1)

Application Number Title Priority Date Filing Date
DK07874524.7T DK2099935T3 (da) 2006-11-30 2007-11-29 Array for detektion af mikrober

Country Status (5)

Country Link
US (3) US8771940B2 (da)
EP (1) EP2099935B1 (da)
DK (1) DK2099935T3 (da)
HK (1) HK1135735A1 (da)
WO (1) WO2008130394A2 (da)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2195414A4 (en) * 2007-10-04 2014-01-08 Univ Columbia SYSTEMS AND METHODS FOR EVALUATING OPERATING CONDITIONS IN A BIOREACTOR USING MONITORING OF GENE EXPRESSION AND ABUNDANCE
WO2009100201A2 (en) * 2008-02-07 2009-08-13 Lawrence Livermore National Security, Llc Functionalized platform for arrays configured for optical detection of targets and related arrays, methods and systems
US20100323910A1 (en) * 2009-01-30 2010-12-23 Baker Hughes Incorporated DNA Microarray for Quantitative Detection of Microbial Processes in the Oilfield
US20120165215A1 (en) 2009-06-26 2012-06-28 The Regents Of The University Of California Methods and systems for phylogenetic analysis
US20110195862A1 (en) * 2010-02-08 2011-08-11 Pett-Ridge Jennifer Devices, methods and systems for target detection
US9228240B2 (en) * 2010-06-03 2016-01-05 California Institute Of Technology Methods for detecting and quantifying viable bacterial endo-spores
US8877438B2 (en) * 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US9725770B2 (en) * 2012-03-06 2017-08-08 The Regents Of The University Of California Methods and compositions for identification of source of microbial contamination in a sample
WO2014107619A1 (en) 2013-01-04 2014-07-10 Second Genome, Inc. Microbiome modulation index
CA2899808A1 (en) 2013-03-14 2014-10-02 Second Genome, Inc. Microbial ecology shift assay
US9580758B2 (en) 2013-11-12 2017-02-28 Luc Montagnier System and method for the detection and treatment of infection by a microbial agent associated with HIV infection
WO2016007544A1 (en) 2014-07-11 2016-01-14 Matatu, Inc. Use of a gut microbiome as a predictor of animal growth or health
WO2016081267A1 (en) * 2014-11-18 2016-05-26 Epicentre Technologies Corporation Method and compositions for detecting pathogenic organisms
US11015154B2 (en) 2016-11-09 2021-05-25 The Regents Of The University Of California Methods for identifying interactions amongst microorganisms
US20180148769A1 (en) * 2016-11-25 2018-05-31 Mitsubishi Chemical Corporation Bacterial flora analysis method and bacterial flora analysis device

Family Cites Families (33)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5143854A (en) 1989-06-07 1992-09-01 Affymax Technologies N.V. Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof
US6582908B2 (en) * 1990-12-06 2003-06-24 Affymetrix, Inc. Oligonucleotides
US7115364B1 (en) * 1993-10-26 2006-10-03 Affymetrix, Inc. Arrays of nucleic acid probes on biological chips
US6156501A (en) 1993-10-26 2000-12-05 Affymetrix, Inc. Arrays of modified nucleic acid probes and methods of use
US6309823B1 (en) 1993-10-26 2001-10-30 Affymetrix, Inc. Arrays of nucleic acid probes for analyzing biotransformation genes and methods of using the same
US5874291A (en) * 1994-05-20 1999-02-23 University Of Washington Degradation of environmental toxins by a filamentous bacterium
US5795716A (en) 1994-10-21 1998-08-18 Chee; Mark S. Computer-aided visualization and analysis system for sequence evaluation
US6228575B1 (en) 1996-02-08 2001-05-08 Affymetrix, Inc. Chip-based species identification and phenotypic characterization of microorganisms
WO1999022023A2 (de) 1997-10-29 1999-05-06 Mira Diagnostica Gmbh Verfahren zum nachweis von mikroorganismen
US7108968B2 (en) * 1998-04-03 2006-09-19 Affymetrix, Inc. Mycobacterial rpoB sequences
EP1144684B1 (en) * 1999-01-06 2009-08-19 Callida Genomics, Inc. Enhanced sequencing by hybridization using pools of probes
US20020086289A1 (en) * 1999-06-15 2002-07-04 Don Straus Genomic profiling: a rapid method for testing a complex biological sample for the presence of many types of organisms
EP2206791B1 (en) 2000-04-10 2016-07-13 Taxon Biosciences, Inc. Methods for the survey and genetic analysis of populations
US7455966B1 (en) * 2000-05-01 2008-11-25 Science Applications International Corporation System and method for detecting a biological entity in a water sample
US6913879B1 (en) 2000-07-10 2005-07-05 Telechem International Inc. Microarray method of genotyping multiple samples at multiple LOCI
US20040005555A1 (en) * 2000-08-31 2004-01-08 Rothman Richard E. Molecular diagnosis of bactermia
US20020187490A1 (en) 2001-06-07 2002-12-12 Michigan State University Microbial identification chip based on DNA-DNA hybridization
US7214492B1 (en) * 2002-04-24 2007-05-08 The University Of North Carolina At Greensboro Nucleic acid arrays to monitor water and other ecosystems
EP1473370A3 (en) 2003-04-24 2005-03-09 BioMerieux, Inc. Genus, group, species and/or strain specific 16S rDNA Sequences
US20050170361A1 (en) * 2004-02-02 2005-08-04 Chih-Wei Ho Method of preparing reaction regions for biochips
KR100682891B1 (ko) 2004-09-14 2007-02-15 삼성전자주식회사 프로브 세트를 설계하는 방법, 그에 의하여 설계된프로브가 고정화된 기판을 갖는 마이크로어레이 및 상기방법을 컴퓨터가 수행할 수 있도록 하는 프로그램을기록한 컴퓨터 판독가능한 매체
WO2007018563A2 (en) 2004-10-05 2007-02-15 Wyeth Probe arrays for detecting multiple strains of different species
US7763426B2 (en) * 2004-11-01 2010-07-27 The Regents Of The University Of California Probes and methods for detection of Escheridia coli and antibiotic resistance
US20060110744A1 (en) 2004-11-23 2006-05-25 Sampas Nicolas M Probe design methods and microarrays for comparative genomic hybridization and location analysis
US7627437B2 (en) * 2005-01-14 2009-12-01 Idaho Research Foundation Categorization of microbial communities
EP1770171A1 (en) 2005-09-29 2007-04-04 Universität Zu Köln DNA microarray for rapid identification of Candida albicans in blood cultures.
WO2007056680A2 (en) 2005-11-03 2007-05-18 Forsyth Dental Infirmary For Children Methods and arrays for identifying human microflora
BRPI0606663A (pt) * 2005-11-21 2008-01-15 Biosigma Sa arranjo de fragmentos de dna de microorganismos biominerais e método de detecção dos mesmos
WO2007091230A1 (en) 2006-02-07 2007-08-16 Stokes Bio Limited A microfluidic analysis system
AT503862B1 (de) 2006-07-05 2010-11-15 Arc Austrian Res Centers Gmbh Pathogen-identifizierung anhand eines 16s oder 18s-rrna mikroarray
KR100813263B1 (ko) 2006-08-17 2008-03-13 삼성전자주식회사 표적 서열 검출용 프로브 설계 방법 및 상기 프로브를이용한 표적 서열 검출 방법
US7730051B2 (en) * 2007-07-23 2010-06-01 Sap Aktiengesellschaft System and method for embedded expression assignment
US8639445B2 (en) 2007-07-23 2014-01-28 Microsoft Corporation Identification of related residues in biomolecular sequences by multiple sequence alignment and phylogenetic analysis

Also Published As

Publication number Publication date
EP2099935A4 (en) 2010-06-09
US8771940B2 (en) 2014-07-08
EP2099935B1 (en) 2014-02-26
WO2008130394A2 (en) 2008-10-30
US20150337363A1 (en) 2015-11-26
US20090291858A1 (en) 2009-11-26
EP2099935A2 (en) 2009-09-16
US20140287961A1 (en) 2014-09-25
HK1135735A1 (en) 2010-06-11
WO2008130394A3 (en) 2009-01-22

Similar Documents

Publication Publication Date Title
DK2099935T3 (da) Array for detektion af mikrober
CY2017016I2 (el) Αναστολεις πρωτεασωματος
CR10831A (es) INHIBIDORES ESPIRO CETONA DE ACETIL-CoA CARBOXILASA
DK2041138T3 (da) Pyrroltriazinkinase-inhibitorer
DK2024375T3 (da) Cyclopropyl-kondenserede indolobenzazepin-HCV-NS5B-hæmmere
DK2700786T3 (da) Modifikation af overførselspassage
DK2086960T3 (da) Nye inhibitorer af glutaminylcyclase.
DK2647717T3 (da) Bearbejdning af biomasse
ATE510825T1 (de) Acylaminopyrazole als fgfr-inhibitoren
BRPI0806898A2 (pt) Inibidores de mek
BRPI0719204A2 (pt) Inibidores de hdac
DK3208269T3 (da) Inhibitorer af c-fms-kinase
DK2091945T3 (da) Nye inhibitorer af glutaminylcyclase
BRPI0807087A2 (pt) Inibidores de hcv macrocíclicos substituídos de pirimidina
BRPI0813681A2 (pt) Detecção de coproantígeno de nematelminto
DK2111555T3 (da) Diagnosticering af præeklampsi
BRPI0814797A2 (pt) Inibidores dna-pk
DK3106873T3 (da) Fremgangsmåde til detektering af cancer
DK2358714T3 (da) Alkylcyclohexylethere af dihydrotetraazabenzoazulener
BRPI0720547A2 (pt) Inibidores de metaloprotease derivada de heterocíclico
DK2074123T3 (da) Nye anxiolytiske forbindelser
DK2066662T3 (da) Serinhydrolaseinhibitorer
DK2027150T3 (da) Allo-begrænsede peptid-specifikke t-celler
DE112006004211A5 (de) Bohrfutter
FI20065834A0 (fi) Iskulaite